Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0488820 | XP_003598166.2 | 95.789 | 475 | 18 | 1 | 1 | 475 | 1 | 473 | 0.0 | 902 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0488820 | sp|Q8GW43|BIOF_ARATH | 69.762 | 463 | 126 | 2 | 12 | 464 | 6 | 464 | 0.0 | 662 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0488820 | G7IVJ8 | 95.789 | 475 | 18 | 1 | 1 | 475 | 1 | 473 | 0.0 | 902 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002750 | Msa0488820 | 0.807244 | 5.555363e-50 | -8.615850e-47 |
| Msa0002790 | Msa0488820 | 0.805801 | 1.120118e-49 | -8.615850e-47 |
| Msa0116670 | Msa0488820 | 0.805732 | 1.158286e-49 | -8.615850e-47 |
| Msa0173530 | Msa0488820 | 0.807397 | 5.157109e-50 | -8.615850e-47 |
| Msa0393550 | Msa0488820 | 0.863302 | 2.742243e-64 | -8.615850e-47 |
| Msa0462110 | Msa0488820 | 0.962089 | 1.829292e-120 | -8.615850e-47 |
| Msa0348990 | Msa0488820 | 0.967659 | 1.392828e-127 | -8.615850e-47 |
| Msa0488820 | Msa1215820 | 0.802511 | 5.420313e-49 | -8.615850e-47 |
| Msa0488820 | Msa1338190 | 0.804851 | 1.771124e-49 | -8.615850e-47 |
| Msa0488820 | Msa1343260 | 0.804118 | 2.518228e-49 | -8.615850e-47 |
| Msa0488820 | Msa1426370 | 0.814623 | 1.401887e-51 | -8.615850e-47 |
| Msa0488820 | Msa1426490 | 0.809250 | 2.076525e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0488820 | MtrunA17_Chr3g0078851 | 95.789 | 475 | 18 | 1 | 1 | 475 | 1 | 473 | 0.0 | 902 |
| Msa0488820 | MtrunA17_Chr6g0461991 | 26.176 | 340 | 205 | 6 | 144 | 457 | 143 | 462 | 8.70e-26 | 110 |
| Msa0488820 | MtrunA17_Chr3g0099931 | 23.117 | 385 | 243 | 13 | 102 | 455 | 110 | 472 | 9.99e-19 | 88.6 |
| Msa0488820 | MtrunA17_Chr5g0430851 | 22.857 | 385 | 244 | 13 | 102 | 455 | 110 | 472 | 4.09e-18 | 86.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0488820 | AT5G04620.2 | 69.762 | 463 | 126 | 2 | 12 | 464 | 6 | 464 | 0.0 | 662 |
| Msa0488820 | AT5G04620.3 | 70.000 | 410 | 109 | 2 | 12 | 411 | 6 | 411 | 0.0 | 581 |
| Msa0488820 | AT5G04620.1 | 76.133 | 331 | 79 | 0 | 134 | 464 | 1 | 331 | 0.0 | 527 |
| Msa0488820 | AT5G23670.1 | 25.982 | 331 | 199 | 7 | 144 | 448 | 143 | 453 | 4.53e-26 | 111 |
| Msa0488820 | AT5G23670.2 | 25.982 | 331 | 199 | 7 | 144 | 448 | 143 | 453 | 4.53e-26 | 111 |
| Msa0488820 | AT3G48780.2 | 25.982 | 331 | 199 | 7 | 144 | 448 | 143 | 453 | 2.80e-25 | 108 |
| Msa0488820 | AT3G48780.1 | 25.982 | 331 | 199 | 7 | 144 | 448 | 143 | 453 | 2.80e-25 | 108 |
| Msa0488820 | AT3G48790.1 | 25.994 | 327 | 203 | 9 | 141 | 448 | 4 | 310 | 1.07e-22 | 99.4 |
| Msa0488820 | AT3G48790.2 | 27.170 | 265 | 168 | 8 | 203 | 448 | 20 | 278 | 1.74e-19 | 89.7 |
| Msa0488820 | AT4G36480.2 | 21.898 | 274 | 184 | 6 | 102 | 365 | 109 | 362 | 7.02e-16 | 80.5 |
| Msa0488820 | AT4G36480.1 | 21.898 | 274 | 184 | 6 | 102 | 365 | 109 | 362 | 7.02e-16 | 80.5 |
| Msa0488820 | AT4G36480.3 | 20.492 | 244 | 166 | 5 | 102 | 337 | 109 | 332 | 4.30e-13 | 70.9 |
Find 137 sgRNAs with CRISPR-Local
Find 422 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCATTATTGAGTCTAATTTA+AGG | 0.180311 | 3_4:+8952573 | Msa0488820:three_prime_UTR |
| TTAGGTGAAGAGATTGTTTA+TGG | 0.198161 | 3_4:+8947623 | Msa0488820:intron |
| AAAGACTTTCATTTGCTTAC+AGG | 0.206039 | 3_4:+8951317 | Msa0488820:CDS |
| ATTGTTTATGGTGCAGTTTC+TGG | 0.219909 | 3_4:+8947635 | Msa0488820:CDS |
| CTCTAGCTGCCTATGATAAT+TGG | 0.252472 | 3_4:-8947945 | None:intergenic |
| CGTCTTGCTGAGCGGCAAAA+AGG | 0.257869 | 3_4:+8949019 | Msa0488820:CDS |
| TTCCAAGATACACGAATTTA+CGG | 0.288778 | 3_4:+8952458 | Msa0488820:CDS |
| AAAAGAAGAGAATAAGGTTT+TGG | 0.290579 | 3_4:-8946337 | None:intergenic |
| TTTCCAAATCTTCCCTTGTA+TGG | 0.320552 | 3_4:-8952403 | None:intergenic |
| TGTCACTATGGAATAAAATA+AGG | 0.335552 | 3_4:-8952622 | None:intergenic |
| AGAAACAAAAGAAGAGAATA+AGG | 0.341773 | 3_4:-8946343 | None:intergenic |
| TACAGGATTTGCTGCCAATA+TGG | 0.344081 | 3_4:+8948874 | Msa0488820:CDS |
| GATATGATGGGACTTGTAAC+AGG | 0.356056 | 3_4:-8951344 | None:intergenic |
| CTGGCAATGGTGTACTGTTC+CGG | 0.359410 | 3_4:-8952551 | None:intergenic |
| ATGGAGGATTTATAGCTTGC+AGG | 0.364817 | 3_4:+8950475 | Msa0488820:CDS |
| GACAAAATAGCTTGTCACTA+TGG | 0.365353 | 3_4:-8952634 | None:intergenic |
| GGTTTGTTGGTTGGTTGGTT+TGG | 0.375126 | 3_4:-8946316 | None:intergenic |
| TGCCACCATGCACTTGGTAT+TGG | 0.380187 | 3_4:-8946405 | None:intergenic |
| GCAGCAGCAGCAACTGGAAC+CGG | 0.383798 | 3_4:-8950710 | None:intergenic |
| CCAGTTGCTGCTGCTGCTCA+TGG | 0.386729 | 3_4:+8950716 | Msa0488820:CDS |
| AGGGGTTCTGCTCTTATTTG+TGG | 0.388904 | 3_4:+8947917 | Msa0488820:CDS |
| GTCTTCAGTGCCAACGATAA+GGG | 0.391432 | 3_4:-8951366 | None:intergenic |
| TTATAGCTCTCCATTCTATC+AGG | 0.394212 | 3_4:+8952500 | Msa0488820:exon |
| GTGAAACCACGTTTAGGAAA+TGG | 0.396653 | 3_4:+8946583 | Msa0488820:CDS |
| CTGAGTTCCCATCCGACTAT+TGG | 0.396677 | 3_4:+8947731 | Msa0488820:CDS |
| AAATTCGTGAAACCACGTTT+AGG | 0.399614 | 3_4:+8946577 | Msa0488820:CDS |
| AGTATTGGTTCTCTCTTAGC+TGG | 0.404148 | 3_4:+8948917 | Msa0488820:CDS |
| TGCTGTCATCAAGGCCATAT+TGG | 0.404382 | 3_4:-8948888 | None:intergenic |
| ATGACAGCAATTGGAAGTAT+TGG | 0.404847 | 3_4:+8948902 | Msa0488820:CDS |
| GTGGATATACCAATTATCAT+AGG | 0.411155 | 3_4:+8947936 | Msa0488820:CDS |
| GATTGCCTTCTTTGTCCTAC+AGG | 0.411725 | 3_4:+8948857 | Msa0488820:CDS |
| AGTCCATACAAGGGAAGATT+TGG | 0.414221 | 3_4:+8952400 | Msa0488820:CDS |
| GCTACTAACCTGCAGGAGTT+AGG | 0.415259 | 3_4:-8951601 | None:intergenic |
| TGCAGCTTGTTTAGCATGGA+TGG | 0.419362 | 3_4:+8949948 | Msa0488820:intron |
| AAAGATAATTTACCGGAACT+TGG | 0.420440 | 3_4:-8946618 | None:intergenic |
| AGCCGTAAATTCGTGTATCT+TGG | 0.428138 | 3_4:-8952460 | None:intergenic |
| TGTCTTCAGTGCCAACGATA+AGG | 0.430524 | 3_4:-8951367 | None:intergenic |
| CATGGCGTAGAAAGGCCATT+TGG | 0.432019 | 3_4:+8951285 | Msa0488820:CDS |
| TAGGCAGCTAGAGTCGAGTT+TGG | 0.436591 | 3_4:+8947955 | Msa0488820:CDS |
| ATGGCCTTGATGACAGCAAT+TGG | 0.443915 | 3_4:+8948893 | Msa0488820:CDS |
| GTAGAAAGGCCATTTGGAAC+CGG | 0.446898 | 3_4:+8951291 | Msa0488820:CDS |
| CCATGAGCAGCAGCAGCAAC+TGG | 0.447831 | 3_4:-8950716 | None:intergenic |
| CATGCACTTGGTATTGGTAT+TGG | 0.448515 | 3_4:-8946399 | None:intergenic |
| AAGATAATTTACCGGAACTT+GGG | 0.449828 | 3_4:-8946617 | None:intergenic |
| TGGCAATGGTGTACTGTTCC+GGG | 0.453061 | 3_4:-8952550 | None:intergenic |
| TACCCCGCGTTGGAGACAAA+TGG | 0.462284 | 3_4:-8946490 | None:intergenic |
| CCCTCAGTGCAGTCCATACA+AGG | 0.466293 | 3_4:+8952390 | Msa0488820:CDS |
| GCCAACGATAAGGGATATGA+TGG | 0.470013 | 3_4:-8951357 | None:intergenic |
| ATGCATGATACCCCAAGTTC+CGG | 0.470094 | 3_4:+8946606 | Msa0488820:CDS |
| TGCAATTCATCCTGATAGAA+TGG | 0.471003 | 3_4:-8952510 | None:intergenic |
| GACCCATTTGTCTCCAACGC+GGG | 0.472070 | 3_4:+8946487 | Msa0488820:CDS |
| AACAGGCATTTATTACAAGC+TGG | 0.479117 | 3_4:+8951541 | Msa0488820:intron |
| GTCTTTCACCCGGTTCCAAA+TGG | 0.482290 | 3_4:-8951300 | None:intergenic |
| ACCCCGCGTTGGAGACAAAT+GGG | 0.498357 | 3_4:-8946489 | None:intergenic |
| GGATGGGGACTTTGCACCAA+TGG | 0.499074 | 3_4:+8949965 | Msa0488820:CDS |
| ATGGGATCGTTCTTCTGTTG+AGG | 0.500572 | 3_4:+8946551 | Msa0488820:CDS |
| GCTCATGGGACATTTGTTTG+TGG | 0.500720 | 3_4:+8950363 | Msa0488820:CDS |
| CTGTGCCTCCTAACTCCTGC+AGG | 0.500969 | 3_4:+8951593 | Msa0488820:CDS |
| TAAATTAGACTCAATAATGC+TGG | 0.509439 | 3_4:-8952570 | None:intergenic |
| AGTAAAGCTGCCGGCTGCCA+TGG | 0.511804 | 3_4:+8950456 | Msa0488820:CDS |
| GCAGCTTGTTTAGCATGGAT+GGG | 0.512276 | 3_4:+8949949 | Msa0488820:intron |
| GGTAAATGATGATGCGTTTG+AGG | 0.513120 | 3_4:+8946509 | Msa0488820:CDS |
| AATCACGCGTCAATAATTGA+TGG | 0.513514 | 3_4:+8948992 | Msa0488820:CDS |
| ACATGAGACATGGCGTAGAA+AGG | 0.514262 | 3_4:+8951277 | Msa0488820:CDS |
| CCTTGTATGGACTGCACTGA+GGG | 0.516556 | 3_4:-8952390 | None:intergenic |
| AATGTGCGTTTCCAGGCTCA+TGG | 0.523142 | 3_4:+8950348 | Msa0488820:intron |
| CAGCTTGTTTAGCATGGATG+GGG | 0.523345 | 3_4:+8949950 | Msa0488820:intron |
| GCAGCAGCCTTTCCAATAGT+CGG | 0.526222 | 3_4:-8947743 | None:intergenic |
| CAATAGTCGGATGGGAACTC+AGG | 0.528500 | 3_4:-8947730 | None:intergenic |
| TATTAGGCAGCTCAAGAACA+TGG | 0.535300 | 3_4:+8947884 | Msa0488820:intron |
| ACTTCCAATTGCTGTCATCA+AGG | 0.535625 | 3_4:-8948897 | None:intergenic |
| AAGAACATGGGATGGGACCA+AGG | 0.538361 | 3_4:+8947897 | Msa0488820:CDS |
| TATTGGAAAGGCTGCTGCAA+AGG | 0.541245 | 3_4:+8947748 | Msa0488820:CDS |
| GAAGTACTCTGAGAGAATCA+AGG | 0.543629 | 3_4:-8946455 | None:intergenic |
| TATAAATCCTCCATGGCAGC+CGG | 0.545155 | 3_4:-8950466 | None:intergenic |
| GTTTCTGGTGATGATGAAGC+AGG | 0.549109 | 3_4:+8947650 | Msa0488820:CDS |
| CATCATCATTTACCCCGCGT+TGG | 0.549164 | 3_4:-8946500 | None:intergenic |
| GCAGAACTCCGCAAGAAGCA+TGG | 0.550468 | 3_4:+8949996 | Msa0488820:CDS |
| TTATTGCAGCTTGTTTAGCA+TGG | 0.551970 | 3_4:+8949944 | Msa0488820:intron |
| GAGTTAGGAGGCACAGTTGG+TGG | 0.555017 | 3_4:-8951586 | None:intergenic |
| AGAACATGGGATGGGACCAA+GGG | 0.555717 | 3_4:+8947898 | Msa0488820:CDS |
| GTTCAATTGTGAGAAGGATG+TGG | 0.559563 | 3_4:+8950413 | Msa0488820:CDS |
| GTATTGGTTCTCTCTTAGCT+GGG | 0.560380 | 3_4:+8948918 | Msa0488820:CDS |
| ACACGAATTTACGGCTGCAA+TGG | 0.562509 | 3_4:+8952467 | Msa0488820:CDS |
| CAAATCCTGTAGGACAAAGA+AGG | 0.562711 | 3_4:-8948862 | None:intergenic |
| GGCAGCTCAAGAACATGGGA+TGG | 0.564408 | 3_4:+8947889 | Msa0488820:intron |
| ATCAATGTGATTAACTATCC+CGG | 0.564848 | 3_4:+8952532 | Msa0488820:three_prime_UTR |
| TAGAAAGGCCATTTGGAACC+GGG | 0.565145 | 3_4:+8951292 | Msa0488820:CDS |
| ACAGTAACTTCTTTCAACAA+TGG | 0.565711 | 3_4:+8946371 | Msa0488820:exon |
| TAAGGACATTGCATTTGTAG+TGG | 0.566631 | 3_4:+8952591 | Msa0488820:three_prime_UTR |
| AGATAATTTACCGGAACTTG+GGG | 0.566826 | 3_4:-8946616 | None:intergenic |
| AGACTCAATAATGCTGGCAA+TGG | 0.570145 | 3_4:-8952564 | None:intergenic |
| CAGCCTTTCCAATAGTCGGA+TGG | 0.571423 | 3_4:-8947739 | None:intergenic |
| TCACAATGTCTATATATGTA+CGG | 0.573210 | 3_4:-8949049 | None:intergenic |
| GTTTGATGAAATGCAGCAAT+GGG | 0.577345 | 3_4:+8946533 | Msa0488820:CDS |
| CAAATAAGAGCAGAACCCCT+TGG | 0.578144 | 3_4:-8947914 | None:intergenic |
| ATGTGCGTTTCCAGGCTCAT+GGG | 0.580951 | 3_4:+8950349 | Msa0488820:intron |
| AGCCTTTCCAATAGTCGGAT+GGG | 0.582726 | 3_4:-8947738 | None:intergenic |
| ACAAAGCACTGCAAGCAAGC+CGG | 0.591467 | 3_4:+8951387 | Msa0488820:CDS |
| AGTTCTGCAAGCTCAACCAT+TGG | 0.591758 | 3_4:-8949981 | None:intergenic |
| GTAACTTCTTTCAACAATGG+AGG | 0.592686 | 3_4:+8946374 | Msa0488820:exon |
| CCCATCATATCCCTTATCGT+TGG | 0.593478 | 3_4:+8951356 | Msa0488820:CDS |
| AAGTACTCTGAGAGAATCAA+GGG | 0.600416 | 3_4:-8946454 | None:intergenic |
| CTCACAAGAGTGTATTGAGG+TGG | 0.601182 | 3_4:-8949078 | None:intergenic |
| CAGGAGTTAGGAGGCACAGT+TGG | 0.603297 | 3_4:-8951589 | None:intergenic |
| AAGGATGTGGATATTTGCAT+TGG | 0.603517 | 3_4:+8950426 | Msa0488820:CDS |
| ATGCATCCATTTCCTAAACG+TGG | 0.609430 | 3_4:-8946589 | None:intergenic |
| TTCCCATCCGACTATTGGAA+AGG | 0.612334 | 3_4:+8947736 | Msa0488820:CDS |
| GTGGTCTGATTGCAGTCACA+TGG | 0.612568 | 3_4:-8951567 | None:intergenic |
| CCCTTGTATGGACTGCACTG+AGG | 0.613045 | 3_4:-8952391 | None:intergenic |
| TGTTTGATGAAATGCAGCAA+TGG | 0.613912 | 3_4:+8946532 | Msa0488820:CDS |
| TGCAAGCTATAAATCCTCCA+TGG | 0.620898 | 3_4:-8950473 | None:intergenic |
| AAAGCTGCCGGCTGCCATGG+AGG | 0.624806 | 3_4:+8950459 | Msa0488820:CDS |
| GCAGCTCAAGAACATGGGAT+GGG | 0.629189 | 3_4:+8947890 | Msa0488820:CDS |
| CAATACCAATACCAAGTGCA+TGG | 0.635504 | 3_4:+8946400 | Msa0488820:CDS |
| ATTAGGCAGCTCAAGAACAT+GGG | 0.637158 | 3_4:+8947885 | Msa0488820:intron |
| ACTAACCTGCAGGAGTTAGG+AGG | 0.641127 | 3_4:-8951598 | None:intergenic |
| TCACAAGAGTGTATTGAGGT+GGG | 0.645382 | 3_4:-8949077 | None:intergenic |
| GCAAATGAAAGTCTTTCACC+CGG | 0.646068 | 3_4:-8951310 | None:intergenic |
| ATTGATGCAATTCGAGAGTG+CGG | 0.646071 | 3_4:-8952435 | None:intergenic |
| AAATGGTGGTGGTGTTGCTG+AGG | 0.647397 | 3_4:+8950389 | Msa0488820:CDS |
| GGTACACTAAGTAAAGCTGC+CGG | 0.648395 | 3_4:+8950447 | Msa0488820:CDS |
| GAACATGGGATGGGACCAAG+GGG | 0.650419 | 3_4:+8947899 | Msa0488820:CDS |
| GAGTGGCAAAACATGAGACA+TGG | 0.650779 | 3_4:+8951267 | Msa0488820:CDS |
| TTTCTGGTGATGATGAAGCA+GGG | 0.655163 | 3_4:+8947651 | Msa0488820:CDS |
| TGAGGAGTTCAATTGTGAGA+AGG | 0.658460 | 3_4:+8950407 | Msa0488820:CDS |
| ATATTGGCAGCAAATCCTGT+AGG | 0.658659 | 3_4:-8948872 | None:intergenic |
| CGACCCATTTGTCTCCAACG+CGG | 0.660994 | 3_4:+8946486 | Msa0488820:CDS |
| ATATGATGGGACTTGTAACA+GGG | 0.666917 | 3_4:-8951343 | None:intergenic |
| ACCCATTTGTCTCCAACGCG+GGG | 0.670033 | 3_4:+8946488 | Msa0488820:CDS |
| ATGGTATTCGTCTTGCTGAG+CGG | 0.672498 | 3_4:+8949011 | Msa0488820:CDS |
| CCAACGATAAGGGATATGAT+GGG | 0.676737 | 3_4:-8951356 | None:intergenic |
| AAACTCACAAGAGTGTATTG+AGG | 0.681743 | 3_4:-8949081 | None:intergenic |
| AAGTTATTAATACAGTCAAG+AGG | 0.690909 | 3_4:+8950659 | Msa0488820:CDS |
| CCTCAGTGCAGTCCATACAA+GGG | 0.703411 | 3_4:+8952391 | Msa0488820:CDS |
| TGAATTCTTATAGCACATCG+TGG | 0.706133 | 3_4:+8950636 | Msa0488820:intron |
| TACCAATACCAAGTGCATGG+TGG | 0.719863 | 3_4:+8946403 | Msa0488820:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAATTGAAAATTGAAAA+TGG | - | chr3_4:8948617-8948636 | None:intergenic | 10.0% |
| !!! | TTTTCAATTATTTATATTTC+TGG | + | chr3_4:8948624-8948643 | Msa0488820:intron | 10.0% |
| !! | TTTCAATTATTTATATTTCT+GGG | + | chr3_4:8948625-8948644 | Msa0488820:intron | 10.0% |
| !! | ACTATTAAGATTAATAAAAT+AGG | - | chr3_4:8949502-8949521 | None:intergenic | 10.0% |
| !!! | ACTAATTCTTTTTTTTTTTT+AGG | - | chr3_4:8951083-8951102 | None:intergenic | 10.0% |
| !!! | TTATTTTCTCAATCTATTAT+AGG | - | chr3_4:8946743-8946762 | None:intergenic | 15.0% |
| !! | ACGAAATTCAAAATAATTAT+AGG | - | chr3_4:8946982-8947001 | None:intergenic | 15.0% |
| !!! | TTCAACCATATTTTTATAAT+AGG | - | chr3_4:8947183-8947202 | None:intergenic | 15.0% |
| !! | ATATAATCGTTAAATAAAGA+AGG | + | chr3_4:8947448-8947467 | Msa0488820:intron | 15.0% |
| !!! | AGAAAATTAATTTTGTTTTC+TGG | + | chr3_4:8947692-8947711 | Msa0488820:CDS | 15.0% |
| !! | AGATTAATAATACATTACTT+AGG | - | chr3_4:8948065-8948084 | None:intergenic | 15.0% |
| !! | AAAGTATAAAATAATCCTAA+TGG | + | chr3_4:8948685-8948704 | Msa0488820:intron | 15.0% |
| !! | ATGAATAATATGCAAATTTA+AGG | - | chr3_4:8949114-8949133 | None:intergenic | 15.0% |
| !!! | AAAAGTATGTAAAAAATTAG+TGG | + | chr3_4:8949381-8949400 | Msa0488820:intron | 15.0% |
| !!! | TTACTTTCTAGAAATATAAA+TGG | - | chr3_4:8950191-8950210 | None:intergenic | 15.0% |
| !! | CATAGAATAGAAAAATTTAT+TGG | - | chr3_4:8950618-8950637 | None:intergenic | 15.0% |
| !! | TTGATATATCTTAAATATTG+AGG | + | chr3_4:8950762-8950781 | Msa0488820:intron | 15.0% |
| !! | AAGAAAAAATATTGAGAAAT+AGG | - | chr3_4:8950820-8950839 | None:intergenic | 15.0% |
| !! | ATGGAAAAATATATAATCAA+AGG | - | chr3_4:8952320-8952339 | None:intergenic | 15.0% |
| !! | GCATACCTATTATAAAAATA+TGG | + | chr3_4:8947175-8947194 | Msa0488820:intron | 20.0% |
| !!! | AATCTAAACTTTGGTAATTT+GGG | + | chr3_4:8947201-8947220 | Msa0488820:intron | 20.0% |
| !! | TGTAATTAAGATAGATTTAG+AGG | + | chr3_4:8947317-8947336 | Msa0488820:intron | 20.0% |
| !!! | TATTCTTGTTATTTGCATAA+AGG | + | chr3_4:8947497-8947516 | Msa0488820:intron | 20.0% |
| !!! | ATTCTTGTTATTTGCATAAA+GGG | + | chr3_4:8947498-8947517 | Msa0488820:intron | 20.0% |
| !!! | TTTTCTGGAAATGATTATTT+AGG | + | chr3_4:8947707-8947726 | Msa0488820:CDS | 20.0% |
| !!! | TTCTTCTGAATTTTATTCTA+CGG | + | chr3_4:8947803-8947822 | Msa0488820:intron | 20.0% |
| !!! | TATTTTCATTGTTCCATATT+AGG | + | chr3_4:8947868-8947887 | Msa0488820:intron | 20.0% |
| !! | ATTATTTGTGCAGTATATAT+GGG | + | chr3_4:8948212-8948231 | Msa0488820:intron | 20.0% |
| !!! | AATTGACTTCATTTTATCTT+TGG | - | chr3_4:8948383-8948402 | None:intergenic | 20.0% |
| !!! | GTTGTTTTCATAAGTTATAA+TGG | + | chr3_4:8948416-8948435 | Msa0488820:intron | 20.0% |
| !! | ATTGAATTTACATATATCAG+TGG | + | chr3_4:8948661-8948680 | Msa0488820:intron | 20.0% |
| !!! | TTTTGAATTTAAAGAACTTG+CGG | + | chr3_4:8948719-8948738 | Msa0488820:intron | 20.0% |
| !! | AACAAATATAGGAGATATTT+AGG | - | chr3_4:8949330-8949349 | None:intergenic | 20.0% |
| !! | GATTATCTAAGAACAAATAT+AGG | - | chr3_4:8949341-8949360 | None:intergenic | 20.0% |
| !! | GTATATAAAAAGCTTTCAAA+CGG | + | chr3_4:8949697-8949716 | Msa0488820:intron | 20.0% |
| !!! | TTCTAGAAATATAAATGGTA+CGG | - | chr3_4:8950186-8950205 | None:intergenic | 20.0% |
| !! | TAATATAAGGATATAACGAT+CGG | - | chr3_4:8950859-8950878 | None:intergenic | 20.0% |
| !!! | TATCTTTTAGAATGAAATTC+AGG | - | chr3_4:8951636-8951655 | None:intergenic | 20.0% |
| !! | GGATTCAAGTAATAAAATAT+TGG | - | chr3_4:8951825-8951844 | None:intergenic | 20.0% |
| !! | TCAAGTTCAACTTAAAATTA+TGG | - | chr3_4:8951846-8951865 | None:intergenic | 20.0% |
| !!! | ATGTTGTTAGTGATTTTTTT+TGG | + | chr3_4:8951954-8951973 | Msa0488820:intron | 20.0% |
| !!! | GTTTTCTCTAATTTTGTAAA+CGG | + | chr3_4:8951990-8952009 | Msa0488820:intron | 20.0% |
| !! | AAAAGAAGAGAATAAGGTTT+TGG | - | chr3_4:8946340-8946359 | None:intergenic | 25.0% |
| ! | AGAAACAAAAGAAGAGAATA+AGG | - | chr3_4:8946346-8946365 | None:intergenic | 25.0% |
| ! | TAGTGCAAAAGATAATTTAC+CGG | - | chr3_4:8946628-8946647 | None:intergenic | 25.0% |
| ! | GTAATTATAAGCTATAAGAC+AGG | + | chr3_4:8947005-8947024 | Msa0488820:intron | 25.0% |
| ! | ATATGGTTGAATCTAAACTT+TGG | + | chr3_4:8947192-8947211 | Msa0488820:intron | 25.0% |
| !! | GAATCTAAACTTTGGTAATT+TGG | + | chr3_4:8947200-8947219 | Msa0488820:intron | 25.0% |
| ! | ATCGTTAAATAAAGAAGGTT+TGG | + | chr3_4:8947453-8947472 | Msa0488820:intron | 25.0% |
| ! | TTTGTGTTCTGTTATGATTT+CGG | + | chr3_4:8947556-8947575 | Msa0488820:intron | 25.0% |
| ! | ACAAGAAAAAGAGGAAAAAA+AGG | - | chr3_4:8947596-8947615 | None:intergenic | 25.0% |
| !!! | TTTTTTTCCTCTTTTTCTTG+TGG | + | chr3_4:8947595-8947614 | Msa0488820:intron | 25.0% |
| !! | TCTTCTGAATTTTATTCTAC+GGG | + | chr3_4:8947804-8947823 | Msa0488820:intron | 25.0% |
| ! | ATTTGAAAAAGAAAGAGGTA+AGG | + | chr3_4:8947981-8948000 | Msa0488820:intron | 25.0% |
| !! | AAGAATCACTATACAGTTTT+TGG | + | chr3_4:8948093-8948112 | Msa0488820:intron | 25.0% |
| !! | AGAATCACTATACAGTTTTT+GGG | + | chr3_4:8948094-8948113 | Msa0488820:intron | 25.0% |
| ! | GATTATTTGTGCAGTATATA+TGG | + | chr3_4:8948211-8948230 | Msa0488820:intron | 25.0% |
| ! | TTATTTGTGCAGTATATATG+GGG | + | chr3_4:8948213-8948232 | Msa0488820:intron | 25.0% |
| !!! | TCAAGGTGATATATGTTTTT+TGG | + | chr3_4:8948247-8948266 | Msa0488820:intron | 25.0% |
| !!! | ATATATGTTTTTTGGTTACC+TGG | + | chr3_4:8948255-8948274 | Msa0488820:intron | 25.0% |
| !!! | TATATGTTTTTTGGTTACCT+GGG | + | chr3_4:8948256-8948275 | Msa0488820:intron | 25.0% |
| !! | AAGTTATAATGGAGAGTTTA+TGG | + | chr3_4:8948427-8948446 | Msa0488820:intron | 25.0% |
| ! | TCACACATATCAAGTATTAA+GGG | - | chr3_4:8948568-8948587 | None:intergenic | 25.0% |
| ! | TTCACACATATCAAGTATTA+AGG | - | chr3_4:8948569-8948588 | None:intergenic | 25.0% |
| ! | GCAAGTTCTTTAAATTCAAA+AGG | - | chr3_4:8948720-8948739 | None:intergenic | 25.0% |
| ! | TTTGAATTTAAAGAACTTGC+GGG | + | chr3_4:8948720-8948739 | Msa0488820:intron | 25.0% |
| ! | TAATTCACTATTCATTAGGT+GGG | - | chr3_4:8948762-8948781 | None:intergenic | 25.0% |
| ! | TTAATTCACTATTCATTAGG+TGG | - | chr3_4:8948763-8948782 | None:intergenic | 25.0% |
| ! | CCTTTAATTCACTATTCATT+AGG | - | chr3_4:8948766-8948785 | None:intergenic | 25.0% |
| ! | CCTAATGAATAGTGAATTAA+AGG | + | chr3_4:8948763-8948782 | Msa0488820:intron | 25.0% |
| ! | ATGAATAGTGAATTAAAGGA+TGG | + | chr3_4:8948767-8948786 | Msa0488820:intron | 25.0% |
| ! | TGAATAGTGAATTAAAGGAT+GGG | + | chr3_4:8948768-8948787 | Msa0488820:intron | 25.0% |
| !! | ATGGATTTTAAACCAAAAAC+AGG | - | chr3_4:8948830-8948849 | None:intergenic | 25.0% |
| ! | TCACAATGTCTATATATGTA+CGG | - | chr3_4:8949052-8949071 | None:intergenic | 25.0% |
| ! | ATTTGTTCTTAGATAATCTC+TGG | + | chr3_4:8949343-8949362 | Msa0488820:intron | 25.0% |
| ! | TTTGTTCTTAGATAATCTCT+GGG | + | chr3_4:8949344-8949363 | Msa0488820:intron | 25.0% |
| !!! | AGAAGATATTTTTACAGTGA+TGG | + | chr3_4:8949897-8949916 | Msa0488820:intron | 25.0% |
| !! | ATGATGTGTTGTTATGTATA+TGG | + | chr3_4:8950094-8950113 | Msa0488820:intron | 25.0% |
| !!! | TATTATTTTAAGCCCTTCTT+AGG | - | chr3_4:8950146-8950165 | None:intergenic | 25.0% |
| ! | AAGACAATAAATAGTAGAGT+GGG | - | chr3_4:8950234-8950253 | None:intergenic | 25.0% |
| ! | TATCAGATAAATAGTTACTC+AGG | - | chr3_4:8950257-8950276 | None:intergenic | 25.0% |
| !!! | TGGTTTTGAAATTAACGTTA+AGG | + | chr3_4:8950517-8950536 | Msa0488820:intron | 25.0% |
| ! | AAGTTATTAATACAGTCAAG+AGG | + | chr3_4:8950659-8950678 | Msa0488820:CDS | 25.0% |
| !!! | ATGGTAAATGTTTTGCTTTT+TGG | - | chr3_4:8950792-8950811 | None:intergenic | 25.0% |
| ! | TATTGAGAAATAGGAACAAA+TGG | - | chr3_4:8950811-8950830 | None:intergenic | 25.0% |
| ! | CATGTTACACAGATAATATA+AGG | - | chr3_4:8950872-8950891 | None:intergenic | 25.0% |
| ! | TGATGGTTCAAATATTTGTT+CGG | + | chr3_4:8951141-8951160 | Msa0488820:intron | 25.0% |
| ! | ACGATTGTAAAAAGAAATGA+TGG | - | chr3_4:8951181-8951200 | None:intergenic | 25.0% |
| ! | GTAATACTTAGATCTTCATT+GGG | - | chr3_4:8951454-8951473 | None:intergenic | 25.0% |
| ! | TGTAATACTTAGATCTTCAT+TGG | - | chr3_4:8951455-8951474 | None:intergenic | 25.0% |
| ! | ATTTGATGTATTTCTTGAAC+AGG | + | chr3_4:8951524-8951543 | Msa0488820:intron | 25.0% |
| ! | AGATAAATAGAACTTATCAG+AGG | + | chr3_4:8951651-8951670 | Msa0488820:intron | 25.0% |
| ! | TAGAAAAACTAGCAAATTTC+TGG | - | chr3_4:8952118-8952137 | None:intergenic | 25.0% |
| !! | TGCATTGTGAACTATAATTT+TGG | + | chr3_4:8952270-8952289 | Msa0488820:intron | 25.0% |
| !! | GCATTGTGAACTATAATTTT+GGG | + | chr3_4:8952271-8952290 | Msa0488820:intron | 25.0% |
| !!! | TGAACTATAATTTTGGGTTA+TGG | + | chr3_4:8952277-8952296 | Msa0488820:intron | 25.0% |
| ! | TAAATTAGACTCAATAATGC+TGG | - | chr3_4:8952573-8952592 | None:intergenic | 25.0% |
| ! | GCATTATTGAGTCTAATTTA+AGG | + | chr3_4:8952573-8952592 | Msa0488820:three_prime_UTR | 25.0% |
| ! | TGTCACTATGGAATAAAATA+AGG | - | chr3_4:8952625-8952644 | None:intergenic | 25.0% |
| !!! | AGAATAAGGTTTTGGTTTGT+TGG | - | chr3_4:8946332-8946351 | None:intergenic | 30.0% |
| ACAGTAACTTCTTTCAACAA+TGG | + | chr3_4:8946371-8946390 | Msa0488820:exon | 30.0% | |
| AAGATAATTTACCGGAACTT+GGG | - | chr3_4:8946620-8946639 | None:intergenic | 30.0% | |
| AAAGATAATTTACCGGAACT+TGG | - | chr3_4:8946621-8946640 | None:intergenic | 30.0% | |
| CATAAATCATAACAGAACAC+AGG | - | chr3_4:8947343-8947362 | None:intergenic | 30.0% | |
| TGCAAATAACAAGAATAGAG+CGG | - | chr3_4:8947494-8947513 | None:intergenic | 30.0% | |
| TTGTGTTCTGTTATGATTTC+GGG | + | chr3_4:8947557-8947576 | Msa0488820:intron | 30.0% | |
| TTAGGTGAAGAGATTGTTTA+TGG | + | chr3_4:8947623-8947642 | Msa0488820:intron | 30.0% | |
| GTGGATATACCAATTATCAT+AGG | + | chr3_4:8947936-8947955 | Msa0488820:CDS | 30.0% | |
| AACAAAACCAGAACAGTTTA+AGG | - | chr3_4:8948024-8948043 | None:intergenic | 30.0% | |
| !!! | AACTGTTCTGGTTTTGTTAT+TGG | + | chr3_4:8948026-8948045 | Msa0488820:intron | 30.0% |
| AATGTTCAAACTAGGACATA+AGG | - | chr3_4:8948178-8948197 | None:intergenic | 30.0% | |
| TATTTGTGCAGTATATATGG+GGG | + | chr3_4:8948214-8948233 | Msa0488820:intron | 30.0% | |
| !!! | ATATGTTTTTTGGTTACCTG+GGG | + | chr3_4:8948257-8948276 | Msa0488820:intron | 30.0% |
| CTTAAAACAACTTATGCTCA+TGG | + | chr3_4:8948457-8948476 | Msa0488820:intron | 30.0% | |
| ACTTATTTGAGCTTATCAAC+TGG | - | chr3_4:8948532-8948551 | None:intergenic | 30.0% | |
| ! | TCAAGTATTAAGGGTTTGTT+TGG | - | chr3_4:8948559-8948578 | None:intergenic | 30.0% |
| ! | TGGTTTAAAATCCATGCTAT+AGG | + | chr3_4:8948835-8948854 | Msa0488820:intron | 30.0% |
| TAGTATAGACTGTACCAAAA+GGG | - | chr3_4:8949146-8949165 | None:intergenic | 30.0% | |
| TTAGTATAGACTGTACCAAA+AGG | - | chr3_4:8949147-8949166 | None:intergenic | 30.0% | |
| ! | AGAACTGGAAAATTTGTTCA+AGG | + | chr3_4:8949260-8949279 | Msa0488820:intron | 30.0% |
| ! | TGGAAAATTTGTTCAAGGTT+TGG | + | chr3_4:8949265-8949284 | Msa0488820:intron | 30.0% |
| TTGTTCTTAGATAATCTCTG+GGG | + | chr3_4:8949345-8949364 | Msa0488820:intron | 30.0% | |
| AATAGTCAAATCTATGCTAG+TGG | + | chr3_4:8949516-8949535 | Msa0488820:intron | 30.0% | |
| TGAATTTCTCGATGTAAATG+TGG | + | chr3_4:8949585-8949604 | Msa0488820:intron | 30.0% | |
| TGCAAGTACATTATATAGGA+TGG | - | chr3_4:8949631-8949650 | None:intergenic | 30.0% | |
| !! | ATTTTATTGAAGCATCACAG+AGG | - | chr3_4:8949745-8949764 | None:intergenic | 30.0% |
| TTCATTCATGTGATGTGTAA+TGG | - | chr3_4:8949811-8949830 | None:intergenic | 30.0% | |
| ACTTTGCAACAAATGCAATA+AGG | + | chr3_4:8949845-8949864 | Msa0488820:intron | 30.0% | |
| CTTTGCAACAAATGCAATAA+GGG | + | chr3_4:8949846-8949865 | Msa0488820:intron | 30.0% | |
| AACAAATGCAATAAGGGAAA+AGG | + | chr3_4:8949852-8949871 | Msa0488820:intron | 30.0% | |
| GAACAAAACAAACCAATAAG+AGG | - | chr3_4:8950050-8950069 | None:intergenic | 30.0% | |
| GAAGACAATAAATAGTAGAG+TGG | - | chr3_4:8950235-8950254 | None:intergenic | 30.0% | |
| AGCAAAATATGTCTTCTCTT+TGG | + | chr3_4:8950279-8950298 | Msa0488820:intron | 30.0% | |
| AAATAAAAATGTGCGTTTCC+AGG | + | chr3_4:8950341-8950360 | Msa0488820:intron | 30.0% | |
| ACATTTGTTTGTGGCAAAAA+TGG | + | chr3_4:8950372-8950391 | Msa0488820:CDS | 30.0% | |
| AGCATGATCTTATAGATTAG+TGG | + | chr3_4:8950924-8950943 | Msa0488820:intron | 30.0% | |
| GATGCAAAGAAAGAAATGTT+TGG | + | chr3_4:8951114-8951133 | Msa0488820:intron | 30.0% | |
| AAGAAATGTTTGGTATGTGA+TGG | + | chr3_4:8951124-8951143 | Msa0488820:intron | 30.0% | |
| AAATATGTCATTCTCACAAG+AGG | - | chr3_4:8951212-8951231 | None:intergenic | 30.0% | |
| AAAGACTTTCATTTGCTTAC+AGG | + | chr3_4:8951317-8951336 | Msa0488820:CDS | 30.0% | |
| !! | ACTTATCAGAGGTGTTTAAA+TGG | + | chr3_4:8951662-8951681 | Msa0488820:intron | 30.0% |
| !! | CTTATCAGAGGTGTTTAAAT+GGG | + | chr3_4:8951663-8951682 | Msa0488820:intron | 30.0% |
| ! | CTCTAATTTTGTAAACGGTT+AGG | + | chr3_4:8951995-8952014 | Msa0488820:intron | 30.0% |
| ATTATGACCCACAATAAGTT+TGG | + | chr3_4:8952191-8952210 | Msa0488820:intron | 30.0% | |
| GAAAGAAAGGTAAAAGATGT+AGG | - | chr3_4:8952344-8952363 | None:intergenic | 30.0% | |
| TTCCAAGATACACGAATTTA+CGG | + | chr3_4:8952458-8952477 | Msa0488820:CDS | 30.0% | |
| ATCAATGTGATTAACTATCC+CGG | + | chr3_4:8952532-8952551 | Msa0488820:three_prime_UTR | 30.0% | |
| !!! | TAAGGTTTTGGTTTGTTGGT+TGG | - | chr3_4:8946328-8946347 | None:intergenic | 35.0% |
| GTAACTTCTTTCAACAATGG+AGG | + | chr3_4:8946374-8946393 | Msa0488820:exon | 35.0% | |
| ! | AAGTACTCTGAGAGAATCAA+GGG | - | chr3_4:8946457-8946476 | None:intergenic | 35.0% |
| TGTTTGATGAAATGCAGCAA+TGG | + | chr3_4:8946532-8946551 | Msa0488820:CDS | 35.0% | |
| GTTTGATGAAATGCAGCAAT+GGG | + | chr3_4:8946533-8946552 | Msa0488820:CDS | 35.0% | |
| AAATTCGTGAAACCACGTTT+AGG | + | chr3_4:8946577-8946596 | Msa0488820:CDS | 35.0% | |
| AGATAATTTACCGGAACTTG+GGG | - | chr3_4:8946619-8946638 | None:intergenic | 35.0% | |
| ! | TATTATAGGTGATGACGTGT+TGG | - | chr3_4:8946729-8946748 | None:intergenic | 35.0% |
| CTACATTGAGTTTATCGTGT+TGG | - | chr3_4:8947063-8947082 | None:intergenic | 35.0% | |
| ATTAGAGATCAAGAGAGAGT+AGG | + | chr3_4:8947148-8947167 | Msa0488820:intron | 35.0% | |
| TTAGAGATCAAGAGAGAGTA+GGG | + | chr3_4:8947149-8947168 | Msa0488820:intron | 35.0% | |
| CTTCATATTGTGGTATTTGC+AGG | - | chr3_4:8947240-8947259 | None:intergenic | 35.0% | |
| AATATGAAGAGCAGATCAGA+TGG | + | chr3_4:8947251-8947270 | Msa0488820:intron | 35.0% | |
| CTTCTTCTGCTTCTAACAAT+TGG | - | chr3_4:8947285-8947304 | None:intergenic | 35.0% | |
| CAATTGTTAGAAGCAGAAGA+AGG | + | chr3_4:8947283-8947302 | Msa0488820:intron | 35.0% | |
| AATCTCACCACAAGAAAAAG+AGG | - | chr3_4:8947605-8947624 | None:intergenic | 35.0% | |
| ! | CTTTTTCTTGTGGTGAGATT+AGG | + | chr3_4:8947605-8947624 | Msa0488820:intron | 35.0% |
| ATTGTTTATGGTGCAGTTTC+TGG | + | chr3_4:8947635-8947654 | Msa0488820:CDS | 35.0% | |
| GGCAGATTTGAAAAAGAAAG+AGG | + | chr3_4:8947976-8947995 | Msa0488820:CDS | 35.0% | |
| AAAAAGAAAGAGGTAAGGAC+TGG | + | chr3_4:8947986-8948005 | Msa0488820:intron | 35.0% | |
| GATCAAGCAATGTTCAAACT+AGG | - | chr3_4:8948186-8948205 | None:intergenic | 35.0% | |
| GTTTGAACATTGCTTGATCT+TGG | + | chr3_4:8948187-8948206 | Msa0488820:intron | 35.0% | |
| !!! | TATGTTTTTTGGTTACCTGG+GGG | + | chr3_4:8948258-8948277 | Msa0488820:intron | 35.0% |
| ! | AAAAGGTATGTGACTCCATT+AGG | - | chr3_4:8948703-8948722 | None:intergenic | 35.0% |
| ! | ATGAAATGCTGACCTGTTTT+TGG | + | chr3_4:8948815-8948834 | Msa0488820:intron | 35.0% |
| ! | ATGACAGCAATTGGAAGTAT+TGG | + | chr3_4:8948902-8948921 | Msa0488820:CDS | 35.0% |
| ! | GCAATCTTTTCATCATCTGA+AGG | - | chr3_4:8948953-8948972 | None:intergenic | 35.0% |
| AATCACGCGTCAATAATTGA+TGG | + | chr3_4:8948992-8949011 | Msa0488820:CDS | 35.0% | |
| ! | AAACTCACAAGAGTGTATTG+AGG | - | chr3_4:8949084-8949103 | None:intergenic | 35.0% |
| AGTATAGACTGTACCAAAAG+GGG | - | chr3_4:8949145-8949164 | None:intergenic | 35.0% | |
| GAAAAATTGTGATAACCGAC+AGG | + | chr3_4:8949212-8949231 | Msa0488820:CDS | 35.0% | |
| TGCTACTAGTGAAATAGAAC+TGG | + | chr3_4:8949245-8949264 | Msa0488820:intron | 35.0% | |
| CGGATGCAAGTACATTATAT+AGG | - | chr3_4:8949635-8949654 | None:intergenic | 35.0% | |
| AAATGCAATAAGGGAAAAGG+AGG | + | chr3_4:8949855-8949874 | Msa0488820:intron | 35.0% | |
| ! | TTATTGCAGCTTGTTTAGCA+TGG | + | chr3_4:8949944-8949963 | Msa0488820:intron | 35.0% |
| GATGATGTAAGACCTCTTAT+TGG | + | chr3_4:8950035-8950054 | Msa0488820:intron | 35.0% | |
| ACTAAGGTTAAGACCTAAGA+AGG | + | chr3_4:8950130-8950149 | Msa0488820:intron | 35.0% | |
| CTAAGGTTAAGACCTAAGAA+GGG | + | chr3_4:8950131-8950150 | Msa0488820:intron | 35.0% | |
| TAGTAGAGTGGGTAATTACT+TGG | - | chr3_4:8950223-8950242 | None:intergenic | 35.0% | |
| TTTGTTTGTGGCAAAAATGG+TGG | + | chr3_4:8950375-8950394 | Msa0488820:CDS | 35.0% | |
| AAGGATGTGGATATTTGCAT+TGG | + | chr3_4:8950426-8950445 | Msa0488820:CDS | 35.0% | |
| ! | TTATGTTTCTGCACTACATC+AGG | + | chr3_4:8950561-8950580 | Msa0488820:intron | 35.0% |
| TGAATTCTTATAGCACATCG+TGG | + | chr3_4:8950636-8950655 | Msa0488820:intron | 35.0% | |
| ! | TATATTTTCAACTGCTACGC+CGG | + | chr3_4:8950691-8950710 | Msa0488820:CDS | 35.0% |
| TATCAACTCAAGTACAACAC+TGG | - | chr3_4:8950748-8950767 | None:intergenic | 35.0% | |
| GTTGCTTGCATTCACAATAT+TGG | + | chr3_4:8950967-8950986 | Msa0488820:intron | 35.0% | |
| ! | ATATGATGGGACTTGTAACA+GGG | - | chr3_4:8951346-8951365 | None:intergenic | 35.0% |
| AACAGGCATTTATTACAAGC+TGG | + | chr3_4:8951541-8951560 | Msa0488820:intron | 35.0% | |
| AATAAAAGCTACTAACCTGC+AGG | - | chr3_4:8951611-8951630 | None:intergenic | 35.0% | |
| ! | TGTCTGGCTAGTGAATTTTT+CGG | - | chr3_4:8951773-8951792 | None:intergenic | 35.0% |
| !!! | GTGATTTTTTTTGGTGTCCA+TGG | + | chr3_4:8951963-8951982 | Msa0488820:intron | 35.0% |
| AATTAGAGAAAACGAGACCA+TGG | - | chr3_4:8951983-8952002 | None:intergenic | 35.0% | |
| !! | TGTGGCTTTATTAGTAGTGA+GGG | - | chr3_4:8952058-8952077 | None:intergenic | 35.0% |
| !! | ATGTGGCTTTATTAGTAGTG+AGG | - | chr3_4:8952059-8952078 | None:intergenic | 35.0% |
| CTAATAAAGCCACATCTTTC+TGG | + | chr3_4:8952064-8952083 | Msa0488820:intron | 35.0% | |
| ATACACTTCCAAACTGATGT+AGG | + | chr3_4:8952143-8952162 | Msa0488820:intron | 35.0% | |
| TACACTTCCAAACTGATGTA+GGG | + | chr3_4:8952144-8952163 | Msa0488820:intron | 35.0% | |
| TATTGTGGGTCATAATTGCA+TGG | - | chr3_4:8952187-8952206 | None:intergenic | 35.0% | |
| !!! | CTTATTTTTGGGATAGACCA+AGG | - | chr3_4:8952222-8952241 | None:intergenic | 35.0% |
| TATAGTTCACAATGCACATC+AGG | - | chr3_4:8952266-8952285 | None:intergenic | 35.0% | |
| AAAGGTAAAAGATGTAGGCA+TGG | - | chr3_4:8952339-8952358 | None:intergenic | 35.0% | |
| AAAACAGAGGCAAGAAAGAA+AGG | - | chr3_4:8952357-8952376 | None:intergenic | 35.0% | |
| ! | TTCTTTCTTGCCTCTGTTTT+AGG | + | chr3_4:8952357-8952376 | Msa0488820:intron | 35.0% |
| TTTCCAAATCTTCCCTTGTA+TGG | - | chr3_4:8952406-8952425 | None:intergenic | 35.0% | |
| TTATAGCTCTCCATTCTATC+AGG | + | chr3_4:8952500-8952519 | Msa0488820:exon | 35.0% | |
| TGCAATTCATCCTGATAGAA+TGG | - | chr3_4:8952513-8952532 | None:intergenic | 35.0% | |
| TAAGGACATTGCATTTGTAG+TGG | + | chr3_4:8952591-8952610 | Msa0488820:three_prime_UTR | 35.0% | |
| ! | GACAAAATAGCTTGTCACTA+TGG | - | chr3_4:8952637-8952656 | None:intergenic | 35.0% |
| !!! | GTTTTGGTTTGTTGGTTGGT+TGG | - | chr3_4:8946324-8946343 | None:intergenic | 40.0% |
| !! | CATGCACTTGGTATTGGTAT+TGG | - | chr3_4:8946402-8946421 | None:intergenic | 40.0% |
| CAATACCAATACCAAGTGCA+TGG | + | chr3_4:8946400-8946419 | Msa0488820:CDS | 40.0% | |
| AAGTGCATGGTGGCAAAAAT+GGG | + | chr3_4:8946413-8946432 | Msa0488820:CDS | 40.0% | |
| ! | GAAGTACTCTGAGAGAATCA+AGG | - | chr3_4:8946458-8946477 | None:intergenic | 40.0% |
| ! | GGTAAATGATGATGCGTTTG+AGG | + | chr3_4:8946509-8946528 | Msa0488820:CDS | 40.0% |
| GTGAAACCACGTTTAGGAAA+TGG | + | chr3_4:8946583-8946602 | Msa0488820:CDS | 40.0% | |
| ATGCATCCATTTCCTAAACG+TGG | - | chr3_4:8946592-8946611 | None:intergenic | 40.0% | |
| GATGTTACAAGACTGAGTGT+TGG | + | chr3_4:8947029-8947048 | Msa0488820:intron | 40.0% | |
| TGAAGATGAGAATGCTATGC+TGG | + | chr3_4:8947083-8947102 | Msa0488820:intron | 40.0% | |
| GTGGAAATGGTAGATGAGAA+AGG | + | chr3_4:8947110-8947129 | Msa0488820:intron | 40.0% | |
| TAGAGATCAAGAGAGAGTAG+GGG | + | chr3_4:8947150-8947169 | Msa0488820:intron | 40.0% | |
| ! | TTTGGTAATTTGGGTGTGTG+TGG | + | chr3_4:8947210-8947229 | Msa0488820:intron | 40.0% |
| CTGATCTGCTCTTCATATTG+TGG | - | chr3_4:8947250-8947269 | None:intergenic | 40.0% | |
| ! | AAGTCTTATCACACTAGGTG+GGG | - | chr3_4:8947403-8947422 | None:intergenic | 40.0% |
| ! | CAAGTCTTATCACACTAGGT+GGG | - | chr3_4:8947404-8947423 | None:intergenic | 40.0% |
| ! | TTTCTGGTGATGATGAAGCA+GGG | + | chr3_4:8947651-8947670 | Msa0488820:CDS | 40.0% |
| TGTTCTTGAGCTGCCTAATA+TGG | - | chr3_4:8947884-8947903 | None:intergenic | 40.0% | |
| TATTAGGCAGCTCAAGAACA+TGG | + | chr3_4:8947884-8947903 | Msa0488820:intron | 40.0% | |
| ATTAGGCAGCTCAAGAACAT+GGG | + | chr3_4:8947885-8947904 | Msa0488820:intron | 40.0% | |
| CTCTAGCTGCCTATGATAAT+TGG | - | chr3_4:8947948-8947967 | None:intergenic | 40.0% | |
| GAGAACTCCTTAAACTGTTC+TGG | + | chr3_4:8948014-8948033 | Msa0488820:intron | 40.0% | |
| AAAACAACAACAATTCCCCC+AGG | - | chr3_4:8948276-8948295 | None:intergenic | 40.0% | |
| AAGCACGTGTGAGACTATTT+GGG | - | chr3_4:8948506-8948525 | None:intergenic | 40.0% | |
| TAAGCACGTGTGAGACTATT+TGG | - | chr3_4:8948507-8948526 | None:intergenic | 40.0% | |
| AAGAAGGCAATCCTATAGCA+TGG | - | chr3_4:8948849-8948868 | None:intergenic | 40.0% | |
| CAAATCCTGTAGGACAAAGA+AGG | - | chr3_4:8948865-8948884 | None:intergenic | 40.0% | |
| ATATTGGCAGCAAATCCTGT+AGG | - | chr3_4:8948875-8948894 | None:intergenic | 40.0% | |
| !! | TACAGGATTTGCTGCCAATA+TGG | + | chr3_4:8948874-8948893 | Msa0488820:CDS | 40.0% |
| ACTTCCAATTGCTGTCATCA+AGG | - | chr3_4:8948900-8948919 | None:intergenic | 40.0% | |
| !! | AGTATTGGTTCTCTCTTAGC+TGG | + | chr3_4:8948917-8948936 | Msa0488820:CDS | 40.0% |
| !! | GTATTGGTTCTCTCTTAGCT+GGG | + | chr3_4:8948918-8948937 | Msa0488820:CDS | 40.0% |
| ! | TCACAAGAGTGTATTGAGGT+GGG | - | chr3_4:8949080-8949099 | None:intergenic | 40.0% |
| ! | TTCATTCCCTATTCCCCTTT+TGG | + | chr3_4:8949129-8949148 | Msa0488820:intron | 40.0% |
| ACTGTACCAAAAGGGGAATA+GGG | - | chr3_4:8949138-8949157 | None:intergenic | 40.0% | |
| TAGCAGAATGACTAACCTGT+CGG | - | chr3_4:8949230-8949249 | None:intergenic | 40.0% | |
| ! | AATTAGTGGATCACACGTGA+TGG | + | chr3_4:8949395-8949414 | Msa0488820:intron | 40.0% |
| ! | CAAGCATTGTCTCTTCTCTA+CGG | - | chr3_4:8949655-8949674 | None:intergenic | 40.0% |
| ACAAAAAGCCATGCTTCTTG+CGG | - | chr3_4:8950007-8950026 | None:intergenic | 40.0% | |
| !! | ATGTATATGGTTCTGATCCC+CGG | + | chr3_4:8950107-8950126 | Msa0488820:intron | 40.0% |
| TTAGGTCTTAACCTTAGTCC+GGG | - | chr3_4:8950128-8950147 | None:intergenic | 40.0% | |
| CTTAGGTCTTAACCTTAGTC+CGG | - | chr3_4:8950129-8950148 | None:intergenic | 40.0% | |
| AGTGGGTAATTACTTGGAGT+GGG | - | chr3_4:8950217-8950236 | None:intergenic | 40.0% | |
| TGAGGAGTTCAATTGTGAGA+AGG | + | chr3_4:8950407-8950426 | Msa0488820:CDS | 40.0% | |
| GTTCAATTGTGAGAAGGATG+TGG | + | chr3_4:8950413-8950432 | Msa0488820:CDS | 40.0% | |
| TGCAAGCTATAAATCCTCCA+TGG | - | chr3_4:8950476-8950495 | None:intergenic | 40.0% | |
| ! | ATGGAGGATTTATAGCTTGC+AGG | + | chr3_4:8950475-8950494 | Msa0488820:CDS | 40.0% |
| GTAAACTATCTGTGTACACG+TGG | + | chr3_4:8950497-8950516 | Msa0488820:intron | 40.0% | |
| ACGATCGGTATGAAGGATAA+GGG | - | chr3_4:8950844-8950863 | None:intergenic | 40.0% | |
| AACGATCGGTATGAAGGATA+AGG | - | chr3_4:8950845-8950864 | None:intergenic | 40.0% | |
| GGATATAACGATCGGTATGA+AGG | - | chr3_4:8950851-8950870 | None:intergenic | 40.0% | |
| AGATCATGCTAGAAGTGAGA+GGG | - | chr3_4:8950914-8950933 | None:intergenic | 40.0% | |
| AAGATCATGCTAGAAGTGAG+AGG | - | chr3_4:8950915-8950934 | None:intergenic | 40.0% | |
| TGTGAATGCAAGCAACAATC+AGG | - | chr3_4:8950963-8950982 | None:intergenic | 40.0% | |
| GACTGCTTGAGTTCATATGA+AGG | + | chr3_4:8950989-8951008 | Msa0488820:intron | 40.0% | |
| GCAAATGAAAGTCTTTCACC+CGG | - | chr3_4:8951313-8951332 | None:intergenic | 40.0% | |
| ! | GATATGATGGGACTTGTAAC+AGG | - | chr3_4:8951347-8951366 | None:intergenic | 40.0% |
| CCAACGATAAGGGATATGAT+GGG | - | chr3_4:8951359-8951378 | None:intergenic | 40.0% | |
| ! | ACTTTCCCTCCCATCATTTT+TGG | + | chr3_4:8951426-8951445 | Msa0488820:intron | 40.0% |
| CATTGGGCACCAAAAATGAT+GGG | - | chr3_4:8951438-8951457 | None:intergenic | 40.0% | |
| TCATTGGGCACCAAAAATGA+TGG | - | chr3_4:8951439-8951458 | None:intergenic | 40.0% | |
| !! | ATGATCAGCTTCTGAAGTAG+TGG | - | chr3_4:8951483-8951502 | None:intergenic | 40.0% |
| !! | GCTCGTAACTGTTTCTACAT+TGG | + | chr3_4:8951737-8951756 | Msa0488820:intron | 40.0% |
| !! | GCTAGTGAATTTTTCGGCTA+GGG | - | chr3_4:8951767-8951786 | None:intergenic | 40.0% |
| TTGACTGAGTCATTTGTGTC+TGG | - | chr3_4:8951789-8951808 | None:intergenic | 40.0% | |
| ! | TTTTCGTGAGAAGCGACTAA+AGG | + | chr3_4:8951882-8951901 | Msa0488820:intron | 40.0% |
| AGCGACTAAAGGATAGAGTA+AGG | + | chr3_4:8951893-8951912 | Msa0488820:intron | 40.0% | |
| GCGACTAAAGGATAGAGTAA+GGG | + | chr3_4:8951894-8951913 | Msa0488820:intron | 40.0% | |
| AGGATAGAGTAAGGGATAAC+TGG | + | chr3_4:8951902-8951921 | Msa0488820:intron | 40.0% | |
| ! | GCTTTATTAGTAGTGAGGGT+GGG | - | chr3_4:8952054-8952073 | None:intergenic | 40.0% |
| ! | TCTTTCTGGAAGTGCACAAT+CGG | + | chr3_4:8952078-8952097 | Msa0488820:intron | 40.0% |
| GGTTAGGCCAAACTTATTGT+GGG | - | chr3_4:8952201-8952220 | None:intergenic | 40.0% | |
| AGGTTAGGCCAAACTTATTG+TGG | - | chr3_4:8952202-8952221 | None:intergenic | 40.0% | |
| CAATAAGTTTGGCCTAACCT+TGG | + | chr3_4:8952202-8952221 | Msa0488820:intron | 40.0% | |
| !!! | TTTTGGGATAGACCAAGGTT+AGG | - | chr3_4:8952217-8952236 | None:intergenic | 40.0% |
| !! | TGGCTGGACAGCTTATTTTT+GGG | - | chr3_4:8952233-8952252 | None:intergenic | 40.0% |
| !! | ATGGCTGGACAGCTTATTTT+TGG | - | chr3_4:8952234-8952253 | None:intergenic | 40.0% |
| AGTCCATACAAGGGAAGATT+TGG | + | chr3_4:8952400-8952419 | Msa0488820:CDS | 40.0% | |
| ATTGATGCAATTCGAGAGTG+CGG | - | chr3_4:8952438-8952457 | None:intergenic | 40.0% | |
| AGCCGTAAATTCGTGTATCT+TGG | - | chr3_4:8952463-8952482 | None:intergenic | 40.0% | |
| AGACTCAATAATGCTGGCAA+TGG | - | chr3_4:8952567-8952586 | None:intergenic | 40.0% | |
| !! | GGTTTGTTGGTTGGTTGGTT+TGG | - | chr3_4:8946319-8946338 | None:intergenic | 45.0% |
| TACCAATACCAAGTGCATGG+TGG | + | chr3_4:8946403-8946422 | Msa0488820:CDS | 45.0% | |
| ! | CATTTTTGCCACCATGCACT+TGG | - | chr3_4:8946414-8946433 | None:intergenic | 45.0% |
| CAAGTGCATGGTGGCAAAAA+TGG | + | chr3_4:8946412-8946431 | Msa0488820:CDS | 45.0% | |
| ATGGGATCGTTCTTCTGTTG+AGG | + | chr3_4:8946551-8946570 | Msa0488820:CDS | 45.0% | |
| ATGCATGATACCCCAAGTTC+CGG | + | chr3_4:8946606-8946625 | Msa0488820:CDS | 45.0% | |
| CGGTGTGTTATGTCTTGTGT+GGG | - | chr3_4:8946694-8946713 | None:intergenic | 45.0% | |
| CCACACAAGACATAACACAC+CGG | + | chr3_4:8946692-8946711 | Msa0488820:intron | 45.0% | |
| AGAATGCTATGCTGGATGAG+TGG | + | chr3_4:8947091-8947110 | Msa0488820:intron | 45.0% | |
| CTATGCTGGATGAGTGGAAA+TGG | + | chr3_4:8947097-8947116 | Msa0488820:intron | 45.0% | |
| ! | CCAAGTCTTATCACACTAGG+TGG | - | chr3_4:8947405-8947424 | None:intergenic | 45.0% |
| CCACCTAGTGTGATAAGACT+TGG | + | chr3_4:8947402-8947421 | Msa0488820:intron | 45.0% | |
| ! | CGACCAAGTCTTATCACACT+AGG | - | chr3_4:8947408-8947427 | None:intergenic | 45.0% |
| !! | GTTTCTGGTGATGATGAAGC+AGG | + | chr3_4:8947650-8947669 | Msa0488820:CDS | 45.0% |
| TTCCCATCCGACTATTGGAA+AGG | + | chr3_4:8947736-8947755 | Msa0488820:CDS | 45.0% | |
| AGCCTTTCCAATAGTCGGAT+GGG | - | chr3_4:8947741-8947760 | None:intergenic | 45.0% | |
| TATTGGAAAGGCTGCTGCAA+AGG | + | chr3_4:8947748-8947767 | Msa0488820:CDS | 45.0% | |
| CAAATAAGAGCAGAACCCCT+TGG | - | chr3_4:8947917-8947936 | None:intergenic | 45.0% | |
| ! | AGGGGTTCTGCTCTTATTTG+TGG | + | chr3_4:8947917-8947936 | Msa0488820:CDS | 45.0% |
| ATGGGGGAAAGTGATGTTCA+AGG | + | chr3_4:8948230-8948249 | Msa0488820:intron | 45.0% | |
| GATTGCCTTCTTTGTCCTAC+AGG | + | chr3_4:8948857-8948876 | Msa0488820:CDS | 45.0% | |
| TGCTGTCATCAAGGCCATAT+TGG | - | chr3_4:8948891-8948910 | None:intergenic | 45.0% | |
| ! | ATGGCCTTGATGACAGCAAT+TGG | + | chr3_4:8948893-8948912 | Msa0488820:CDS | 45.0% |
| ATGGTATTCGTCTTGCTGAG+CGG | + | chr3_4:8949011-8949030 | Msa0488820:CDS | 45.0% | |
| ! | CTCACAAGAGTGTATTGAGG+TGG | - | chr3_4:8949081-8949100 | None:intergenic | 45.0% |
| GACTGTACCAAAAGGGGAAT+AGG | - | chr3_4:8949139-8949158 | None:intergenic | 45.0% | |
| ! | CAGTGATGGTGTGTGCATTA+TGG | + | chr3_4:8949911-8949930 | Msa0488820:intron | 45.0% |
| ! | TGCAGCTTGTTTAGCATGGA+TGG | + | chr3_4:8949948-8949967 | Msa0488820:intron | 45.0% |
| ! | GCAGCTTGTTTAGCATGGAT+GGG | + | chr3_4:8949949-8949968 | Msa0488820:intron | 45.0% |
| ! | CAGCTTGTTTAGCATGGATG+GGG | + | chr3_4:8949950-8949969 | Msa0488820:intron | 45.0% |
| AGTTCTGCAAGCTCAACCAT+TGG | - | chr3_4:8949984-8950003 | None:intergenic | 45.0% | |
| TAGGTCTTAACCTTAGTCCG+GGG | - | chr3_4:8950127-8950146 | None:intergenic | 45.0% | |
| GAGTGGGTAATTACTTGGAG+TGG | - | chr3_4:8950218-8950237 | None:intergenic | 45.0% | |
| AAACAAATGTCCCATGAGCC+TGG | - | chr3_4:8950362-8950381 | None:intergenic | 45.0% | |
| GCTCATGGGACATTTGTTTG+TGG | + | chr3_4:8950363-8950382 | Msa0488820:CDS | 45.0% | |
| GTTTGTGGCAAAAATGGTGG+TGG | + | chr3_4:8950378-8950397 | Msa0488820:CDS | 45.0% | |
| GGTACACTAAGTAAAGCTGC+CGG | + | chr3_4:8950447-8950466 | Msa0488820:CDS | 45.0% | |
| TATAAATCCTCCATGGCAGC+CGG | - | chr3_4:8950469-8950488 | None:intergenic | 45.0% | |
| ! | TTTTGCAGCTGCTGTTAGAG+TGG | + | chr3_4:8951250-8951269 | Msa0488820:intron | 45.0% |
| GAGTGGCAAAACATGAGACA+TGG | + | chr3_4:8951267-8951286 | Msa0488820:CDS | 45.0% | |
| ACATGAGACATGGCGTAGAA+AGG | + | chr3_4:8951277-8951296 | Msa0488820:CDS | 45.0% | |
| ! | GTAGAAAGGCCATTTGGAAC+CGG | + | chr3_4:8951291-8951310 | Msa0488820:CDS | 45.0% |
| ! | TAGAAAGGCCATTTGGAACC+GGG | + | chr3_4:8951292-8951311 | Msa0488820:CDS | 45.0% |
| CCCATCATATCCCTTATCGT+TGG | + | chr3_4:8951356-8951375 | Msa0488820:CDS | 45.0% | |
| GCCAACGATAAGGGATATGA+TGG | - | chr3_4:8951360-8951379 | None:intergenic | 45.0% | |
| GTCTTCAGTGCCAACGATAA+GGG | - | chr3_4:8951369-8951388 | None:intergenic | 45.0% | |
| TGTCTTCAGTGCCAACGATA+AGG | - | chr3_4:8951370-8951389 | None:intergenic | 45.0% | |
| ! | AATGATGGGAGGGAAAGTGA+GGG | - | chr3_4:8951424-8951443 | None:intergenic | 45.0% |
| ! | AAATGATGGGAGGGAAAGTG+AGG | - | chr3_4:8951425-8951444 | None:intergenic | 45.0% |
| ACTTCAGAAGCTGATCATGC+AGG | + | chr3_4:8951485-8951504 | Msa0488820:intron | 45.0% | |
| !! | GGCTAGTGAATTTTTCGGCT+AGG | - | chr3_4:8951768-8951787 | None:intergenic | 45.0% |
| !! | GGCTTTATTAGTAGTGAGGG+TGG | - | chr3_4:8952055-8952074 | None:intergenic | 45.0% |
| TGTGCACTTCCAGAAAGATG+TGG | - | chr3_4:8952076-8952095 | None:intergenic | 45.0% | |
| ACTTCCAAACTGATGTAGGG+AGG | + | chr3_4:8952147-8952166 | Msa0488820:intron | 45.0% | |
| CTTCCAAACTGATGTAGGGA+GGG | + | chr3_4:8952148-8952167 | Msa0488820:intron | 45.0% | |
| AATAAGCTGTCCAGCCATTG+AGG | + | chr3_4:8952236-8952255 | Msa0488820:intron | 45.0% | |
| GTTCACAATGCACATCAGGT+CGG | - | chr3_4:8952262-8952281 | None:intergenic | 45.0% | |
| ACACGAATTTACGGCTGCAA+TGG | + | chr3_4:8952467-8952486 | Msa0488820:CDS | 45.0% | |
| !! | ATATAAAAAAGATATTAAAA+GGG | - | chr3_4:8946874-8946893 | None:intergenic | 5.0% |
| !! | TATATAAAAAAGATATTAAA+AGG | - | chr3_4:8946875-8946894 | None:intergenic | 5.0% |
| !!! | AATATCTTTTTTATATATAA+AGG | + | chr3_4:8946878-8946897 | Msa0488820:intron | 5.0% |
| TGCCACCATGCACTTGGTAT+TGG | - | chr3_4:8946408-8946427 | None:intergenic | 50.0% | |
| GTGGCAAAAATGGGTCGAAG+AGG | + | chr3_4:8946422-8946441 | Msa0488820:CDS | 50.0% | |
| CATCATCATTTACCCCGCGT+TGG | - | chr3_4:8946503-8946522 | None:intergenic | 50.0% | |
| CCGGTGTGTTATGTCTTGTG+TGG | - | chr3_4:8946695-8946714 | None:intergenic | 50.0% | |
| ! | CGTGTTGGCATTGTCATGTC+CGG | - | chr3_4:8946714-8946733 | None:intergenic | 50.0% |
| GACACAAGTCGAACATCACC+AGG | + | chr3_4:8946808-8946827 | Msa0488820:intron | 50.0% | |
| AAGTCGAACATCACCAGGCA+CGG | + | chr3_4:8946813-8946832 | Msa0488820:intron | 50.0% | |
| CTTATCACACTAGGTGGGGT+TGG | - | chr3_4:8947399-8947418 | None:intergenic | 50.0% | |
| CAATAGTCGGATGGGAACTC+AGG | - | chr3_4:8947733-8947752 | None:intergenic | 50.0% | |
| CTGAGTTCCCATCCGACTAT+TGG | + | chr3_4:8947731-8947750 | Msa0488820:CDS | 50.0% | |
| CAGCCTTTCCAATAGTCGGA+TGG | - | chr3_4:8947742-8947761 | None:intergenic | 50.0% | |
| GCAGCAGCCTTTCCAATAGT+CGG | - | chr3_4:8947746-8947765 | None:intergenic | 50.0% | |
| GCAGCTCAAGAACATGGGAT+GGG | + | chr3_4:8947890-8947909 | Msa0488820:CDS | 50.0% | |
| AAGAACATGGGATGGGACCA+AGG | + | chr3_4:8947897-8947916 | Msa0488820:CDS | 50.0% | |
| AGAACATGGGATGGGACCAA+GGG | + | chr3_4:8947898-8947917 | Msa0488820:CDS | 50.0% | |
| TAGGCAGCTAGAGTCGAGTT+TGG | + | chr3_4:8947955-8947974 | Msa0488820:CDS | 50.0% | |
| GTCTTGCTGAGCGGCAAAAA+GGG | + | chr3_4:8949020-8949039 | Msa0488820:CDS | 50.0% | |
| TCTTGCTGAGCGGCAAAAAG+GGG | + | chr3_4:8949021-8949040 | Msa0488820:CDS | 50.0% | |
| GGTACGGAATCTGTACTCGA+TGG | - | chr3_4:8950170-8950189 | None:intergenic | 50.0% | |
| AATGTGCGTTTCCAGGCTCA+TGG | + | chr3_4:8950348-8950367 | Msa0488820:intron | 50.0% | |
| ATGTGCGTTTCCAGGCTCAT+GGG | + | chr3_4:8950349-8950368 | Msa0488820:intron | 50.0% | |
| !! | AAATGGTGGTGGTGTTGCTG+AGG | + | chr3_4:8950389-8950408 | Msa0488820:CDS | 50.0% |
| CATGGCGTAGAAAGGCCATT+TGG | + | chr3_4:8951285-8951304 | Msa0488820:CDS | 50.0% | |
| GTCTTTCACCCGGTTCCAAA+TGG | - | chr3_4:8951303-8951322 | None:intergenic | 50.0% | |
| !! | ACAAAGCACTGCAAGCAAGC+CGG | + | chr3_4:8951387-8951406 | Msa0488820:CDS | 50.0% |
| ! | GGGCACCAAAAATGATGGGA+GGG | - | chr3_4:8951434-8951453 | None:intergenic | 50.0% |
| ! | TGGGCACCAAAAATGATGGG+AGG | - | chr3_4:8951435-8951454 | None:intergenic | 50.0% |
| GTGGTCTGATTGCAGTCACA+TGG | - | chr3_4:8951570-8951589 | None:intergenic | 50.0% | |
| ACTAACCTGCAGGAGTTAGG+AGG | - | chr3_4:8951601-8951620 | None:intergenic | 50.0% | |
| GCTACTAACCTGCAGGAGTT+AGG | - | chr3_4:8951604-8951623 | None:intergenic | 50.0% | |
| !! | GTGAATTTTTCGGCTAGGGC+AGG | - | chr3_4:8951763-8951782 | None:intergenic | 50.0% |
| ACTCCCTCCCTACATCAGTT+TGG | - | chr3_4:8952154-8952173 | None:intergenic | 50.0% | |
| CCACTCGCAACCTAAAACAG+AGG | - | chr3_4:8952370-8952389 | None:intergenic | 50.0% | |
| !!! | CCTCTGTTTTAGGTTGCGAG+TGG | + | chr3_4:8952367-8952386 | Msa0488820:intron | 50.0% |
| ! | CCTTGTATGGACTGCACTGA+GGG | - | chr3_4:8952393-8952412 | None:intergenic | 50.0% |
| CCTCAGTGCAGTCCATACAA+GGG | + | chr3_4:8952391-8952410 | Msa0488820:CDS | 50.0% | |
| TGGCAATGGTGTACTGTTCC+GGG | - | chr3_4:8952553-8952572 | None:intergenic | 50.0% | |
| CTGGCAATGGTGTACTGTTC+CGG | - | chr3_4:8952554-8952573 | None:intergenic | 50.0% | |
| CGACCCATTTGTCTCCAACG+CGG | + | chr3_4:8946486-8946505 | Msa0488820:CDS | 55.0% | |
| GACCCATTTGTCTCCAACGC+GGG | + | chr3_4:8946487-8946506 | Msa0488820:CDS | 55.0% | |
| ACCCATTTGTCTCCAACGCG+GGG | + | chr3_4:8946488-8946507 | Msa0488820:CDS | 55.0% | |
| ACCCCGCGTTGGAGACAAAT+GGG | - | chr3_4:8946492-8946511 | None:intergenic | 55.0% | |
| TACCCCGCGTTGGAGACAAA+TGG | - | chr3_4:8946493-8946512 | None:intergenic | 55.0% | |
| CACACTCTGTAATCCGTGCC+TGG | - | chr3_4:8946829-8946848 | None:intergenic | 55.0% | |
| GGCAGCTCAAGAACATGGGA+TGG | + | chr3_4:8947889-8947908 | Msa0488820:intron | 55.0% | |
| GAACATGGGATGGGACCAAG+GGG | + | chr3_4:8947899-8947918 | Msa0488820:CDS | 55.0% | |
| CGTCTTGCTGAGCGGCAAAA+AGG | + | chr3_4:8949019-8949038 | Msa0488820:CDS | 55.0% | |
| GGATGGGGACTTTGCACCAA+TGG | + | chr3_4:8949965-8949984 | Msa0488820:CDS | 55.0% | |
| GCAGAACTCCGCAAGAAGCA+TGG | + | chr3_4:8949996-8950015 | Msa0488820:CDS | 55.0% | |
| !! | TGGTTCTGATCCCCGGACTA+AGG | + | chr3_4:8950114-8950133 | Msa0488820:intron | 55.0% |
| AGTGAGGGAGGGATGCATAC+CGG | - | chr3_4:8951409-8951428 | None:intergenic | 55.0% | |
| ATGGGAGGGAAAGTGAGGGA+GGG | - | chr3_4:8951420-8951439 | None:intergenic | 55.0% | |
| ! | GAGTTAGGAGGCACAGTTGG+TGG | - | chr3_4:8951589-8951608 | None:intergenic | 55.0% |
| ! | CAGGAGTTAGGAGGCACAGT+TGG | - | chr3_4:8951592-8951611 | None:intergenic | 55.0% |
| CCCTCAGTGCAGTCCATACA+AGG | + | chr3_4:8952390-8952409 | Msa0488820:CDS | 55.0% | |
| ! | CCCTTGTATGGACTGCACTG+AGG | - | chr3_4:8952394-8952413 | None:intergenic | 55.0% |
| ! | AGTAAAGCTGCCGGCTGCCA+TGG | + | chr3_4:8950456-8950475 | Msa0488820:CDS | 60.0% |
| GCAGCAGCAGCAACTGGAAC+CGG | - | chr3_4:8950713-8950732 | None:intergenic | 60.0% | |
| CCATGAGCAGCAGCAGCAAC+TGG | - | chr3_4:8950719-8950738 | None:intergenic | 60.0% | |
| CCAGTTGCTGCTGCTGCTCA+TGG | + | chr3_4:8950716-8950735 | Msa0488820:CDS | 60.0% | |
| GATGGGAGGGAAAGTGAGGG+AGG | - | chr3_4:8951421-8951440 | None:intergenic | 60.0% | |
| CTGTGCCTCCTAACTCCTGC+AGG | + | chr3_4:8951593-8951612 | Msa0488820:CDS | 60.0% | |
| ATCAGGTCGGCCTCAATGGC+TGG | - | chr3_4:8952249-8952268 | None:intergenic | 60.0% | |
| GCACATCAGGTCGGCCTCAA+TGG | - | chr3_4:8952253-8952272 | None:intergenic | 60.0% | |
| ! | AAAGCTGCCGGCTGCCATGG+AGG | + | chr3_4:8950459-8950478 | Msa0488820:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 8946315 | 8952709 | 8946315 | ID=Msa0488820;Name=Msa0488820 |
| chr3_4 | mRNA | 8946315 | 8952709 | 8946315 | ID=Msa0488820-mRNA-1;Parent=Msa0488820;Name=Msa0488820-mRNA-1;_AED=0.16;_eAED=0.16;_QI=75|1|1|1|0.9|1|11|204|475 |
| chr3_4 | exon | 8946315 | 8946627 | 8946315 | ID=Msa0488820-mRNA-1:exon:2872;Parent=Msa0488820-mRNA-1 |
| chr3_4 | exon | 8947627 | 8947769 | 8947627 | ID=Msa0488820-mRNA-1:exon:2873;Parent=Msa0488820-mRNA-1 |
| chr3_4 | exon | 8947890 | 8947997 | 8947890 | ID=Msa0488820-mRNA-1:exon:2874;Parent=Msa0488820-mRNA-1 |
| chr3_4 | exon | 8948857 | 8949095 | 8948857 | ID=Msa0488820-mRNA-1:exon:2875;Parent=Msa0488820-mRNA-1 |
| chr3_4 | exon | 8949192 | 8949233 | 8949192 | ID=Msa0488820-mRNA-1:exon:2876;Parent=Msa0488820-mRNA-1 |
| chr3_4 | exon | 8949953 | 8950040 | 8949953 | ID=Msa0488820-mRNA-1:exon:2877;Parent=Msa0488820-mRNA-1 |
| chr3_4 | exon | 8950363 | 8950496 | 8950363 | ID=Msa0488820-mRNA-1:exon:2878;Parent=Msa0488820-mRNA-1 |
| chr3_4 | exon | 8950649 | 8950737 | 8950649 | ID=Msa0488820-mRNA-1:exon:2879;Parent=Msa0488820-mRNA-1 |
| chr3_4 | exon | 8951258 | 8951408 | 8951258 | ID=Msa0488820-mRNA-1:exon:2880;Parent=Msa0488820-mRNA-1 |
| chr3_4 | exon | 8951546 | 8951614 | 8951546 | ID=Msa0488820-mRNA-1:exon:2881;Parent=Msa0488820-mRNA-1 |
| chr3_4 | exon | 8952379 | 8952709 | 8952379 | ID=Msa0488820-mRNA-1:exon:2882;Parent=Msa0488820-mRNA-1 |
| chr3_4 | five_prime_UTR | 8946315 | 8946389 | 8946315 | ID=Msa0488820-mRNA-1:five_prime_utr;Parent=Msa0488820-mRNA-1 |
| chr3_4 | CDS | 8946390 | 8946627 | 8946390 | ID=Msa0488820-mRNA-1:cds;Parent=Msa0488820-mRNA-1 |
| chr3_4 | CDS | 8947627 | 8947769 | 8947627 | ID=Msa0488820-mRNA-1:cds;Parent=Msa0488820-mRNA-1 |
| chr3_4 | CDS | 8947890 | 8947997 | 8947890 | ID=Msa0488820-mRNA-1:cds;Parent=Msa0488820-mRNA-1 |
| chr3_4 | CDS | 8948857 | 8949095 | 8948857 | ID=Msa0488820-mRNA-1:cds;Parent=Msa0488820-mRNA-1 |
| chr3_4 | CDS | 8949192 | 8949233 | 8949192 | ID=Msa0488820-mRNA-1:cds;Parent=Msa0488820-mRNA-1 |
| chr3_4 | CDS | 8949953 | 8950040 | 8949953 | ID=Msa0488820-mRNA-1:cds;Parent=Msa0488820-mRNA-1 |
| chr3_4 | CDS | 8950363 | 8950496 | 8950363 | ID=Msa0488820-mRNA-1:cds;Parent=Msa0488820-mRNA-1 |
| chr3_4 | CDS | 8950649 | 8950737 | 8950649 | ID=Msa0488820-mRNA-1:cds;Parent=Msa0488820-mRNA-1 |
| chr3_4 | CDS | 8951258 | 8951408 | 8951258 | ID=Msa0488820-mRNA-1:cds;Parent=Msa0488820-mRNA-1 |
| chr3_4 | CDS | 8951546 | 8951614 | 8951546 | ID=Msa0488820-mRNA-1:cds;Parent=Msa0488820-mRNA-1 |
| chr3_4 | CDS | 8952379 | 8952505 | 8952379 | ID=Msa0488820-mRNA-1:cds;Parent=Msa0488820-mRNA-1 |
| chr3_4 | three_prime_UTR | 8952506 | 8952709 | 8952506 | ID=Msa0488820-mRNA-1:three_prime_utr;Parent=Msa0488820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
