AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0348990


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0348990 MtrunA17_Chr3g0078851 96.421 475 15 1 1 475 1 473 0.0 907
Msa0348990 MtrunA17_Chr6g0461991 26.176 340 205 6 144 457 143 462 7.84e-26 110
Msa0348990 MtrunA17_Chr3g0099931 23.117 385 243 13 102 455 110 472 1.06e-18 88.6
Msa0348990 MtrunA17_Chr5g0430851 22.857 385 244 13 102 455 110 472 4.24e-18 86.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0348990 AT5G04620.2 69.546 463 127 2 12 464 6 464 0.0 664
Msa0348990 AT5G04620.3 69.756 410 110 2 12 411 6 411 0.0 583
Msa0348990 AT5G04620.1 76.133 331 79 0 134 464 1 331 0.0 527
Msa0348990 AT5G23670.1 25.982 331 199 7 144 448 143 453 5.21e-26 110
Msa0348990 AT5G23670.2 25.982 331 199 7 144 448 143 453 5.21e-26 110
Msa0348990 AT3G48780.2 25.982 331 199 7 144 448 143 453 2.62e-25 108
Msa0348990 AT3G48780.1 25.982 331 199 7 144 448 143 453 2.62e-25 108
Msa0348990 AT3G48790.1 25.994 327 203 9 141 448 4 310 1.28e-22 99.4
Msa0348990 AT3G48790.2 27.170 265 168 8 203 448 20 278 1.79e-19 89.7
Msa0348990 AT4G36480.2 22.628 274 182 8 102 365 109 362 7.54e-16 80.1
Msa0348990 AT4G36480.1 22.628 274 182 8 102 365 109 362 7.54e-16 80.1
Msa0348990 AT4G36480.3 20.492 244 166 5 102 337 109 332 4.14e-13 70.9

Find 136 sgRNAs with CRISPR-Local

Find 506 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCATTATTGAGTCTAATTTA+AGG 0.180311 3_1:+12195838 Msa0348990:three_prime_UTR
TTAGGTGAAGAGATTGTTTA+TGG 0.198161 3_1:+12190116 Msa0348990:intron
AAAGACTTTCATTTGCTTAC+AGG 0.206039 3_1:+12194582 Msa0348990:CDS
ATTGTTTATGGTGCAGTTTC+TGG 0.219909 3_1:+12190128 Msa0348990:CDS
CTCTAGCTGCCTATGATAAT+TGG 0.252472 3_1:-12190439 None:intergenic
GGTAGATGATGATGCGTTTC+AGG 0.254633 3_1:+12189001 Msa0348990:CDS
CGTCTTGCTGAGCGGCAAAA+AGG 0.257869 3_1:+12191513 Msa0348990:CDS
TTCCAAGATACACGAATTTA+CGG 0.288778 3_1:+12195723 Msa0348990:CDS
AAAAGAAGAGAAGAAGGTTT+TGG 0.302002 3_1:-12188829 None:intergenic
TTTCCAAATCTTCCCTTGTA+TGG 0.320552 3_1:-12195668 None:intergenic
TGTCACTATGGAATAAAATA+AGG 0.335552 3_1:-12195887 None:intergenic
TACAGGATTTGCTGCCAATA+TGG 0.344081 3_1:+12191368 Msa0348990:CDS
GATATGATGGGACTTGTAAC+AGG 0.356056 3_1:-12194609 None:intergenic
CTGGCAATGGTGTACTGTTC+CGG 0.359410 3_1:-12195816 None:intergenic
ATGGAGGATTTATAGCTTGC+AGG 0.364817 3_1:+12192968 Msa0348990:CDS
GACAAAATAGCTTGTCACTA+TGG 0.365353 3_1:-12195899 None:intergenic
GGTTTGTTGGTTGGTTGGTT+TGG 0.375126 3_1:-12188808 None:intergenic
GCAGCAGCAGCAACTGGAAC+CGG 0.383798 3_1:-12193203 None:intergenic
CCAGTTGCTGCTGCTGCTCA+TGG 0.386729 3_1:+12193209 Msa0348990:CDS
AGGGGTTCTGCTCTTATTTG+TGG 0.388904 3_1:+12190411 Msa0348990:CDS
TCCCACCATGCAGTTGGTAT+TGG 0.391062 3_1:-12188897 None:intergenic
GTCTTCAGTGCCAACGATAA+GGG 0.391432 3_1:-12194631 None:intergenic
TTATAGCTCTCCATTCTATC+AGG 0.394212 3_1:+12195765 Msa0348990:exon
GTGAAACCACGTTTAGGAAA+TGG 0.396653 3_1:+12189075 Msa0348990:CDS
CTGAGTTCCCATCCGACTAT+TGG 0.396677 3_1:+12190224 Msa0348990:CDS
AAATTCGTGAAACCACGTTT+AGG 0.399614 3_1:+12189069 Msa0348990:CDS
AGTATTGGTTCTCTCTTAGC+TGG 0.404148 3_1:+12191411 Msa0348990:CDS
TGCTGTCATCAAGGCCATAT+TGG 0.404382 3_1:-12191382 None:intergenic
ATGACAGCAATTGGAAGTAT+TGG 0.404847 3_1:+12191396 Msa0348990:CDS
GTGGATATACCAATTATCAT+AGG 0.411155 3_1:+12190430 Msa0348990:CDS
GATTGCCTTCTTTGTCCTAC+AGG 0.411725 3_1:+12191351 Msa0348990:CDS
AGTCCATACAAGGGAAGATT+TGG 0.414221 3_1:+12195665 Msa0348990:CDS
GCTACTAACCTGCAGGAGTT+AGG 0.415259 3_1:-12194866 None:intergenic
TGCAGCTTGTTTAGCATGGA+TGG 0.419362 3_1:+12192441 Msa0348990:intron
TACCTCACGTTGGAGACAAA+TGG 0.419730 3_1:-12188982 None:intergenic
AAAGATAATTTACCGGAACT+TGG 0.420440 3_1:-12189110 None:intergenic
AGCCGTAAATTCGTGTATCT+TGG 0.428138 3_1:-12195725 None:intergenic
TGTCTTCAGTGCCAACGATA+AGG 0.430524 3_1:-12194632 None:intergenic
CATGGCGTAGAAAGGCCATT+TGG 0.432019 3_1:+12194550 Msa0348990:CDS
TAGGCAGCTAGAGTCGAGTT+TGG 0.436591 3_1:+12190449 Msa0348990:CDS
CATGCAGTTGGTATTGGTAT+TGG 0.442156 3_1:-12188891 None:intergenic
ATGGCCTTGATGACAGCAAT+TGG 0.443915 3_1:+12191387 Msa0348990:CDS
GTAGAAAGGCCATTTGGAAC+CGG 0.446898 3_1:+12194556 Msa0348990:CDS
CCATGAGCAGCAGCAGCAAC+TGG 0.447831 3_1:-12193209 None:intergenic
AAGATAATTTACCGGAACTT+GGG 0.449828 3_1:-12189109 None:intergenic
TGGCAATGGTGTACTGTTCC+GGG 0.453061 3_1:-12195815 None:intergenic
CCCTCAGTGCAGTCCATACA+AGG 0.466293 3_1:+12195655 Msa0348990:CDS
GCCAACGATAAGGGATATGA+TGG 0.470013 3_1:-12194622 None:intergenic
ATGCATGATACCCCAAGTTC+CGG 0.470094 3_1:+12189098 Msa0348990:CDS
TGCAATTCATCCTGATAGAA+TGG 0.471003 3_1:-12195775 None:intergenic
AACAGGCATTTATTACAAGC+TGG 0.479117 3_1:+12194806 Msa0348990:intron
GTCTTTCACCCGGTTCCAAA+TGG 0.482290 3_1:-12194565 None:intergenic
ACCTCACGTTGGAGACAAAT+GGG 0.490170 3_1:-12188981 None:intergenic
GGATGGGGACTTTGCACCAA+TGG 0.499074 3_1:+12192458 Msa0348990:CDS
ATGGGATCGTTCTTCTGTTG+AGG 0.500572 3_1:+12189043 Msa0348990:CDS
GCTCATGGGACATTTGTTTG+TGG 0.500720 3_1:+12192856 Msa0348990:CDS
CTGTGCCTCCTAACTCCTGC+AGG 0.500969 3_1:+12194858 Msa0348990:CDS
TAAATTAGACTCAATAATGC+TGG 0.509439 3_1:-12195835 None:intergenic
AGTAAAGCTGCCGGCTGCCA+TGG 0.511804 3_1:+12192949 Msa0348990:CDS
GCAGCTTGTTTAGCATGGAT+GGG 0.512276 3_1:+12192442 Msa0348990:intron
ACCAATACCAACTGCATGGT+GGG 0.512747 3_1:+12188896 Msa0348990:CDS
AATCACGCGTCAATAATTGA+TGG 0.513514 3_1:+12191486 Msa0348990:CDS
ACATGAGACATGGCGTAGAA+AGG 0.514262 3_1:+12194542 Msa0348990:CDS
CCTTGTATGGACTGCACTGA+GGG 0.516556 3_1:-12195655 None:intergenic
AATGTGCGTTTCCAGGCTCA+TGG 0.523142 3_1:+12192841 Msa0348990:intron
CAGCTTGTTTAGCATGGATG+GGG 0.523345 3_1:+12192443 Msa0348990:intron
GCAGCAGCCTTTCCAATAGT+CGG 0.526222 3_1:-12190236 None:intergenic
CAATAGTCGGATGGGAACTC+AGG 0.528500 3_1:-12190223 None:intergenic
ACAAACAAAAGAAGAGAAGA+AGG 0.534068 3_1:-12188835 None:intergenic
TATTAGGCAGCTCAAGAACA+TGG 0.535300 3_1:+12190378 Msa0348990:intron
ACTTCCAATTGCTGTCATCA+AGG 0.535625 3_1:-12191391 None:intergenic
AAGAACATGGGATGGGACCA+AGG 0.538361 3_1:+12190391 Msa0348990:CDS
TATTGGAAAGGCTGCTGCAA+AGG 0.541245 3_1:+12190241 Msa0348990:CDS
TATAAATCCTCCATGGCAGC+CGG 0.545155 3_1:-12192959 None:intergenic
GTTTCTGGTGATGATGAAGC+AGG 0.549109 3_1:+12190143 Msa0348990:CDS
GCAGAACTCCGCAAGAAGCA+TGG 0.550468 3_1:+12192489 Msa0348990:CDS
TTATTGCAGCTTGTTTAGCA+TGG 0.551970 3_1:+12192437 Msa0348990:intron
GAGTTAGGAGGCACAGTTGG+TGG 0.555017 3_1:-12194851 None:intergenic
AGAACATGGGATGGGACCAA+GGG 0.555717 3_1:+12190392 Msa0348990:CDS
GTTCAATTGTGAGAAGGATG+TGG 0.559563 3_1:+12192906 Msa0348990:CDS
GTATTGGTTCTCTCTTAGCT+GGG 0.560380 3_1:+12191412 Msa0348990:CDS
ACACGAATTTACGGCTGCAA+TGG 0.562509 3_1:+12195732 Msa0348990:CDS
CAAATCCTGTAGGACAAAGA+AGG 0.562711 3_1:-12191356 None:intergenic
GGCAGCTCAAGAACATGGGA+TGG 0.564408 3_1:+12190383 Msa0348990:intron
ATCAATGTGATTAACTATCC+CGG 0.564848 3_1:+12195797 Msa0348990:three_prime_UTR
TAGAAAGGCCATTTGGAACC+GGG 0.565145 3_1:+12194557 Msa0348990:CDS
ACAGTAACTTCTTTCAACAA+TGG 0.565711 3_1:+12188863 Msa0348990:exon
TAAGGACATTGCATTTGTAG+TGG 0.566631 3_1:+12195856 Msa0348990:three_prime_UTR
AGATAATTTACCGGAACTTG+GGG 0.566826 3_1:-12189108 None:intergenic
AGACTCAATAATGCTGGCAA+TGG 0.570145 3_1:-12195829 None:intergenic
CAGCCTTTCCAATAGTCGGA+TGG 0.571423 3_1:-12190232 None:intergenic
TCACAATGTCTATATATGTA+CGG 0.573210 3_1:-12191543 None:intergenic
GTTTGATGAAATGCAGCAAT+GGG 0.577345 3_1:+12189025 Msa0348990:CDS
CAAATAAGAGCAGAACCCCT+TGG 0.578144 3_1:-12190408 None:intergenic
ATGTGCGTTTCCAGGCTCAT+GGG 0.580951 3_1:+12192842 Msa0348990:intron
AGCCTTTCCAATAGTCGGAT+GGG 0.582726 3_1:-12190231 None:intergenic
ACAAAGCACTGCAAGCAAGC+CGG 0.591467 3_1:+12194652 Msa0348990:CDS
AGTTCTGCAAGCTCAACCAT+TGG 0.591758 3_1:-12192474 None:intergenic
GTAACTTCTTTCAACAATGG+AGG 0.592686 3_1:+12188866 Msa0348990:exon
CCCATCATATCCCTTATCGT+TGG 0.593478 3_1:+12194621 Msa0348990:CDS
CTCACAAGAGTGTATTGAGG+TGG 0.601182 3_1:-12191572 None:intergenic
CAGGAGTTAGGAGGCACAGT+TGG 0.603297 3_1:-12194854 None:intergenic
AAGGATGTGGATATTTGCAT+TGG 0.603517 3_1:+12192919 Msa0348990:CDS
AAGTACTCTGAGAGAGTCAA+GGG 0.607942 3_1:-12188946 None:intergenic
ATGCATCCATTTCCTAAACG+TGG 0.609430 3_1:-12189081 None:intergenic
TTCCCATCCGACTATTGGAA+AGG 0.612334 3_1:+12190229 Msa0348990:CDS
GTGGTCTGATTGCAGTCACA+TGG 0.612568 3_1:-12194832 None:intergenic
CCCTTGTATGGACTGCACTG+AGG 0.613045 3_1:-12195656 None:intergenic
TGCAAGCTATAAATCCTCCA+TGG 0.620898 3_1:-12192966 None:intergenic
GAAGTACTCTGAGAGAGTCA+AGG 0.624285 3_1:-12188947 None:intergenic
AAAGCTGCCGGCTGCCATGG+AGG 0.624806 3_1:+12192952 Msa0348990:CDS
TGTTTGATGAAATGCAGCAA+TGG 0.626751 3_1:+12189024 Msa0348990:CDS
GCAGCTCAAGAACATGGGAT+GGG 0.629189 3_1:+12190384 Msa0348990:CDS
ATTAGGCAGCTCAAGAACAT+GGG 0.637158 3_1:+12190379 Msa0348990:intron
ACTAACCTGCAGGAGTTAGG+AGG 0.641127 3_1:-12194863 None:intergenic
CAATACCAATACCAACTGCA+TGG 0.642513 3_1:+12188892 Msa0348990:CDS
TCACAAGAGTGTATTGAGGT+GGG 0.645382 3_1:-12191571 None:intergenic
GCAAATGAAAGTCTTTCACC+CGG 0.646068 3_1:-12194575 None:intergenic
ATTGATGCAATTCGAGAGTG+CGG 0.646071 3_1:-12195700 None:intergenic
AAATGGTGGTGGTGTTGCTG+AGG 0.647397 3_1:+12192882 Msa0348990:CDS
TACCAATACCAACTGCATGG+TGG 0.647719 3_1:+12188895 Msa0348990:CDS
GGTACACTAAGTAAAGCTGC+CGG 0.648395 3_1:+12192940 Msa0348990:CDS
GAACATGGGATGGGACCAAG+GGG 0.650419 3_1:+12190393 Msa0348990:CDS
GAGTGGCAAAACATGAGACA+TGG 0.650779 3_1:+12194532 Msa0348990:CDS
ACCCATTTGTCTCCAACGTG+AGG 0.654644 3_1:+12188980 Msa0348990:CDS
TTTCTGGTGATGATGAAGCA+GGG 0.655163 3_1:+12190144 Msa0348990:CDS
TGAGGAGTTCAATTGTGAGA+AGG 0.658460 3_1:+12192900 Msa0348990:CDS
ATATTGGCAGCAAATCCTGT+AGG 0.658659 3_1:-12191366 None:intergenic
ATATGATGGGACTTGTAACA+GGG 0.666917 3_1:-12194608 None:intergenic
ATGGTATTCGTCTTGCTGAG+CGG 0.672498 3_1:+12191505 Msa0348990:CDS
CCAACGATAAGGGATATGAT+GGG 0.676737 3_1:-12194621 None:intergenic
AAACTCACAAGAGTGTATTG+AGG 0.681743 3_1:-12191575 None:intergenic
CATCATCATCTACCTCACGT+TGG 0.687422 3_1:-12188992 None:intergenic
AAGTTATTAATACAGTCAAG+AGG 0.690909 3_1:+12193152 Msa0348990:CDS
CCTCAGTGCAGTCCATACAA+GGG 0.703411 3_1:+12195656 Msa0348990:CDS
TGAATTCTTATAGCACATCG+TGG 0.706133 3_1:+12193129 Msa0348990:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAATTGAAAATTGAAAA+TGG - chr3_1:12191111-12191130 None:intergenic 10.0%
!!! TTTTCAATTATTTATATTTC+TGG + chr3_1:12191118-12191137 Msa0348990:intron 10.0%
!! TTTCAATTATTTATATTTCT+GGG + chr3_1:12191119-12191138 Msa0348990:intron 10.0%
!! ACTATTAAGATTAATAAAAT+AGG - chr3_1:12191996-12192015 None:intergenic 10.0%
!!! ACTAATTCTTTTTTTTTTTT+AGG - chr3_1:12194348-12194367 None:intergenic 10.0%
!!! TTATTTTCTCAATCTATTAT+AGG - chr3_1:12189235-12189254 None:intergenic 15.0%
!! ACGAAATTCAAAATAATTAT+AGG - chr3_1:12189474-12189493 None:intergenic 15.0%
!!! TTCAACCATATTTTTATAAT+AGG - chr3_1:12189675-12189694 None:intergenic 15.0%
!!! AGAAAATTAATTTTGTTTTC+TGG + chr3_1:12190185-12190204 Msa0348990:CDS 15.0%
!! AGATTAATAATACATTACTT+AGG - chr3_1:12190559-12190578 None:intergenic 15.0%
!! AAAGTATAAAATAATCCTAA+TGG + chr3_1:12191179-12191198 Msa0348990:intron 15.0%
!! ATGAATAATATGCAAATTTA+AGG - chr3_1:12191608-12191627 None:intergenic 15.0%
!!! AAAAGTATGTAAAAAATTAG+TGG + chr3_1:12191875-12191894 Msa0348990:intron 15.0%
!!! TTACTTTCTAGAAATATAAA+TGG - chr3_1:12192684-12192703 None:intergenic 15.0%
!! CATAGAATAGAAAAATTTAT+TGG - chr3_1:12193111-12193130 None:intergenic 15.0%
!! TTGATATATCTTAAATATTG+AGG + chr3_1:12193255-12193274 Msa0348990:intron 15.0%
!! AAGAAAAAATATTGAGAAAT+AGG - chr3_1:12193313-12193332 None:intergenic 15.0%
!!! TATGAATTTTTAAATTTGGT+AGG - chr3_1:12193440-12193459 None:intergenic 15.0%
!! ATGGAAAAATATATAATCAA+AGG - chr3_1:12195585-12195604 None:intergenic 15.0%
!! GCATACCTATTATAAAAATA+TGG + chr3_1:12189667-12189686 Msa0348990:intron 20.0%
!!! AATCTAAACTTTGGTAATTT+GGG + chr3_1:12189693-12189712 Msa0348990:intron 20.0%
!! TGTAATTAAGATAGATTTAG+AGG + chr3_1:12189809-12189828 Msa0348990:intron 20.0%
!! ATCGTTAAATAAAGAAGATT+TGG + chr3_1:12189945-12189964 Msa0348990:intron 20.0%
!!! TATTCTTGTTATTTGCATAA+AGG + chr3_1:12189989-12190008 Msa0348990:intron 20.0%
!!! ATTCTTGTTATTTGCATAAA+GGG + chr3_1:12189990-12190009 Msa0348990:intron 20.0%
!!! TTTTCTGGAAATGATTATTT+AGG + chr3_1:12190200-12190219 Msa0348990:CDS 20.0%
!!! TTCTTCTGAATTTTATTCTA+CGG + chr3_1:12190297-12190316 Msa0348990:intron 20.0%
!!! TATTTTCATTGTTCCATATT+AGG + chr3_1:12190362-12190381 Msa0348990:intron 20.0%
!! ATTATTTGTGCAGTATATAT+GGG + chr3_1:12190706-12190725 Msa0348990:intron 20.0%
!!! AATTGACTTCATTTTATCTT+TGG - chr3_1:12190877-12190896 None:intergenic 20.0%
!!! GTTGTTTTCATAAGTTATAA+TGG + chr3_1:12190910-12190929 Msa0348990:intron 20.0%
!!! AAGTTATAATGGAGATTTTA+TGG + chr3_1:12190921-12190940 Msa0348990:intron 20.0%
!! ATTGAATTTACATATATCAG+TGG + chr3_1:12191155-12191174 Msa0348990:intron 20.0%
!!! TTTTGAATTTAAAGAACTTG+CGG + chr3_1:12191213-12191232 Msa0348990:intron 20.0%
!! AACAAATATAGGAGATATTT+AGG - chr3_1:12191824-12191843 None:intergenic 20.0%
!! GATTATCTAAGAACAAATAT+AGG - chr3_1:12191835-12191854 None:intergenic 20.0%
!! GTATATAAAAAGCTTTCAAA+CGG + chr3_1:12192191-12192210 Msa0348990:intron 20.0%
!!! TTCTAGAAATATAAATGGTA+CGG - chr3_1:12192679-12192698 None:intergenic 20.0%
!!! TTTTTTGAAAGTAAGAATGA+AGG + chr3_1:12193555-12193574 Msa0348990:intron 20.0%
!! GAAGATATTCAATAATCAAT+GGG + chr3_1:12193734-12193753 Msa0348990:intron 20.0%
!!! GATTGGAAAAATACTTTTTT+TGG + chr3_1:12193823-12193842 Msa0348990:intron 20.0%
!! TAATATAAGGATATAACGAT+CGG - chr3_1:12194124-12194143 None:intergenic 20.0%
!!! TATCTTTTAGAATGAAATTC+AGG - chr3_1:12194901-12194920 None:intergenic 20.0%
!! TCAAGTTCAACTTAAAATTA+TGG - chr3_1:12195111-12195130 None:intergenic 20.0%
!!! ATGTTGTTAGTGATTTTTTT+TGG + chr3_1:12195219-12195238 Msa0348990:intron 20.0%
!!! GTTTTCTCTAATTTTGTAAA+CGG + chr3_1:12195255-12195274 Msa0348990:intron 20.0%
! TAGTGCAAAAGATAATTTAC+CGG - chr3_1:12189120-12189139 None:intergenic 25.0%
! GTAATTATAAGCTATAAGAC+AGG + chr3_1:12189497-12189516 Msa0348990:intron 25.0%
! ATATGGTTGAATCTAAACTT+TGG + chr3_1:12189684-12189703 Msa0348990:intron 25.0%
!! GAATCTAAACTTTGGTAATT+TGG + chr3_1:12189692-12189711 Msa0348990:intron 25.0%
! TTTGTGTTCTGTTATGATTT+CGG + chr3_1:12190048-12190067 Msa0348990:intron 25.0%
!! TCTTCTGAATTTTATTCTAC+GGG + chr3_1:12190298-12190317 Msa0348990:intron 25.0%
! ATTTGAAAAAGAAAGAGGTA+AGG + chr3_1:12190475-12190494 Msa0348990:intron 25.0%
!! AAGAATCACTATACAGTTTT+TGG + chr3_1:12190587-12190606 Msa0348990:intron 25.0%
!! AGAATCACTATACAGTTTTT+GGG + chr3_1:12190588-12190607 Msa0348990:intron 25.0%
! GATTATTTGTGCAGTATATA+TGG + chr3_1:12190705-12190724 Msa0348990:intron 25.0%
! TTATTTGTGCAGTATATATG+GGG + chr3_1:12190707-12190726 Msa0348990:intron 25.0%
!!! TCAAGGTGATATATGTTTTT+TGG + chr3_1:12190741-12190760 Msa0348990:intron 25.0%
!!! ATATATGTTTTTTGGTTACC+TGG + chr3_1:12190749-12190768 Msa0348990:intron 25.0%
!!! TATATGTTTTTTGGTTACCT+GGG + chr3_1:12190750-12190769 Msa0348990:intron 25.0%
! TCACACATATCAAGTATTAA+GGG - chr3_1:12191062-12191081 None:intergenic 25.0%
! TTCACACATATCAAGTATTA+AGG - chr3_1:12191063-12191082 None:intergenic 25.0%
! GCAAGTTCTTTAAATTCAAA+AGG - chr3_1:12191214-12191233 None:intergenic 25.0%
! TTTGAATTTAAAGAACTTGC+GGG + chr3_1:12191214-12191233 Msa0348990:intron 25.0%
! TAATTCACTATTCATTAGGT+GGG - chr3_1:12191256-12191275 None:intergenic 25.0%
! TTAATTCACTATTCATTAGG+TGG - chr3_1:12191257-12191276 None:intergenic 25.0%
! CCTTTAATTCACTATTCATT+AGG - chr3_1:12191260-12191279 None:intergenic 25.0%
! CCTAATGAATAGTGAATTAA+AGG + chr3_1:12191257-12191276 Msa0348990:intron 25.0%
! ATGAATAGTGAATTAAAGGA+TGG + chr3_1:12191261-12191280 Msa0348990:intron 25.0%
! TGAATAGTGAATTAAAGGAT+GGG + chr3_1:12191262-12191281 Msa0348990:intron 25.0%
!! ATGGATTTTAAACCAAAAAC+AGG - chr3_1:12191324-12191343 None:intergenic 25.0%
! TCACAATGTCTATATATGTA+CGG - chr3_1:12191546-12191565 None:intergenic 25.0%
! ATTTGTTCTTAGATAATCTC+TGG + chr3_1:12191837-12191856 Msa0348990:intron 25.0%
! TTTGTTCTTAGATAATCTCT+GGG + chr3_1:12191838-12191857 Msa0348990:intron 25.0%
!! AATTTTATTGAAGATCACAG+AGG - chr3_1:12192239-12192258 None:intergenic 25.0%
! TTCATTCATGTGATGTATAA+TGG - chr3_1:12192304-12192323 None:intergenic 25.0%
!!! AGAAGATATTTTTACAGTGA+TGG + chr3_1:12192390-12192409 Msa0348990:intron 25.0%
!! ATGATGTGTTGTTATGTATA+TGG + chr3_1:12192587-12192606 Msa0348990:intron 25.0%
!!! TATTATTTTAAGCCCTTCTT+AGG - chr3_1:12192639-12192658 None:intergenic 25.0%
! AAGACAATAAATAGTAGAGT+GGG - chr3_1:12192727-12192746 None:intergenic 25.0%
! TATCAGATAAATAGTTACTC+AGG - chr3_1:12192750-12192769 None:intergenic 25.0%
!!! TGGTTTTGAAATTAACGTTA+AGG + chr3_1:12193010-12193029 Msa0348990:intron 25.0%
! AAGTTATTAATACAGTCAAG+AGG + chr3_1:12193152-12193171 Msa0348990:CDS 25.0%
!!! ATGGTAAATGTTTTGCTTTT+TGG - chr3_1:12193285-12193304 None:intergenic 25.0%
! TATTGAGAAATAGGAACAAA+TGG - chr3_1:12193304-12193323 None:intergenic 25.0%
! TATGAATATGGAAATTGCAT+TGG + chr3_1:12193647-12193666 Msa0348990:intron 25.0%
! ATTTCCCTAATTATTGATAG+TGG + chr3_1:12193702-12193721 Msa0348990:intron 25.0%
! GGAAGATATTCAATAATCAA+TGG + chr3_1:12193733-12193752 Msa0348990:intron 25.0%
!! TAATCAATGGGTTTAATGAT+AGG + chr3_1:12193746-12193765 Msa0348990:intron 25.0%
!!! AAATACTTTTTTTGGCTAAC+CGG + chr3_1:12193831-12193850 Msa0348990:intron 25.0%
!! TGTTTCGTTTTCCAAAAATA+CGG - chr3_1:12193880-12193899 None:intergenic 25.0%
! CATGTTACACAGATAATATA+AGG - chr3_1:12194137-12194156 None:intergenic 25.0%
! TGATGGTTCAAATATTTGTT+CGG + chr3_1:12194406-12194425 Msa0348990:intron 25.0%
! ACGATTGTAAAAAGAAATGA+TGG - chr3_1:12194446-12194465 None:intergenic 25.0%
! GTAATACTTAGATCTTCATT+GGG - chr3_1:12194719-12194738 None:intergenic 25.0%
! TGTAATACTTAGATCTTCAT+TGG - chr3_1:12194720-12194739 None:intergenic 25.0%
! ATTTGATGTATTTCTTGAAC+AGG + chr3_1:12194789-12194808 Msa0348990:intron 25.0%
! AGATAAATAGAACTTATCAG+AGG + chr3_1:12194916-12194935 Msa0348990:intron 25.0%
! GGATTCAAGTAATGAAATAT+TGG - chr3_1:12195090-12195109 None:intergenic 25.0%
! TAGAAAAACTAGCAAATTTC+TGG - chr3_1:12195383-12195402 None:intergenic 25.0%
!! TGCATTGTGAACTATAATTT+TGG + chr3_1:12195535-12195554 Msa0348990:intron 25.0%
!! GCATTGTGAACTATAATTTT+GGG + chr3_1:12195536-12195555 Msa0348990:intron 25.0%
!!! TGAACTATAATTTTGGGTTA+TGG + chr3_1:12195542-12195561 Msa0348990:intron 25.0%
! TAAATTAGACTCAATAATGC+TGG - chr3_1:12195838-12195857 None:intergenic 25.0%
! GCATTATTGAGTCTAATTTA+AGG + chr3_1:12195838-12195857 Msa0348990:three_prime_UTR 25.0%
! TGTCACTATGGAATAAAATA+AGG - chr3_1:12195890-12195909 None:intergenic 25.0%
! AAAAGAAGAGAAGAAGGTTT+TGG - chr3_1:12188832-12188851 None:intergenic 30.0%
ACAAACAAAAGAAGAGAAGA+AGG - chr3_1:12188838-12188857 None:intergenic 30.0%
ACAGTAACTTCTTTCAACAA+TGG + chr3_1:12188863-12188882 Msa0348990:exon 30.0%
AAGATAATTTACCGGAACTT+GGG - chr3_1:12189112-12189131 None:intergenic 30.0%
AAAGATAATTTACCGGAACT+TGG - chr3_1:12189113-12189132 None:intergenic 30.0%
CATAAATCATAACAGAACAC+AGG - chr3_1:12189835-12189854 None:intergenic 30.0%
TGCAAATAACAAGAATAGAG+CGG - chr3_1:12189986-12190005 None:intergenic 30.0%
TTGTGTTCTGTTATGATTTC+GGG + chr3_1:12190049-12190068 Msa0348990:intron 30.0%
CAAGAAAAAGAGGGAAAAAA+AGG - chr3_1:12190088-12190107 None:intergenic 30.0%
!!! TTTTTTCCCTCTTTTTCTTG+TGG + chr3_1:12190088-12190107 Msa0348990:intron 30.0%
TTAGGTGAAGAGATTGTTTA+TGG + chr3_1:12190116-12190135 Msa0348990:intron 30.0%
GTGGATATACCAATTATCAT+AGG + chr3_1:12190430-12190449 Msa0348990:CDS 30.0%
AACAAAACCAGAACAGTTTA+AGG - chr3_1:12190518-12190537 None:intergenic 30.0%
!!! AACTGTTCTGGTTTTGTTAT+TGG + chr3_1:12190520-12190539 Msa0348990:intron 30.0%
AATGTTCAAACTAGGACATA+AGG - chr3_1:12190672-12190691 None:intergenic 30.0%
TATTTGTGCAGTATATATGG+GGG + chr3_1:12190708-12190727 Msa0348990:intron 30.0%
!!! ATATGTTTTTTGGTTACCTG+GGG + chr3_1:12190751-12190770 Msa0348990:intron 30.0%
CTTAAAACAACTTATGCTCA+TGG + chr3_1:12190951-12190970 Msa0348990:intron 30.0%
ACTTATTTGAGCTTATCAAC+TGG - chr3_1:12191026-12191045 None:intergenic 30.0%
! TCAAGTATTAAGGGTTTGTT+TGG - chr3_1:12191053-12191072 None:intergenic 30.0%
! TGGTTTAAAATCCATGCTAT+AGG + chr3_1:12191329-12191348 Msa0348990:intron 30.0%
TAGTATAGACTGTACCAAAA+GGG - chr3_1:12191640-12191659 None:intergenic 30.0%
TTAGTATAGACTGTACCAAA+AGG - chr3_1:12191641-12191660 None:intergenic 30.0%
! AGAACTGGAAAATTTGTTCA+AGG + chr3_1:12191754-12191773 Msa0348990:intron 30.0%
! TGGAAAATTTGTTCAAGGTT+TGG + chr3_1:12191759-12191778 Msa0348990:intron 30.0%
TTGTTCTTAGATAATCTCTG+GGG + chr3_1:12191839-12191858 Msa0348990:intron 30.0%
AATAGTCAAATCTATGCTAG+TGG + chr3_1:12192010-12192029 Msa0348990:intron 30.0%
TGAATTTCTCGATGTAAATG+TGG + chr3_1:12192079-12192098 Msa0348990:intron 30.0%
TGCAAGTACATTATATAGGA+TGG - chr3_1:12192125-12192144 None:intergenic 30.0%
ACTTTGCAACAAATGCAATA+AGG + chr3_1:12192338-12192357 Msa0348990:intron 30.0%
CTTTGCAACAAATGCAATAA+GGG + chr3_1:12192339-12192358 Msa0348990:intron 30.0%
AACAAATGCAATAAGGGAAA+AGG + chr3_1:12192345-12192364 Msa0348990:intron 30.0%
GAACAAAACAAACCAATAAG+AGG - chr3_1:12192543-12192562 None:intergenic 30.0%
GAAGACAATAAATAGTAGAG+TGG - chr3_1:12192728-12192747 None:intergenic 30.0%
AGCAAAATATGTCTTCTCTT+TGG + chr3_1:12192772-12192791 Msa0348990:intron 30.0%
AAATAAAAATGTGCGTTTCC+AGG + chr3_1:12192834-12192853 Msa0348990:intron 30.0%
ACATTTGTTTGTGGCAAAAA+TGG + chr3_1:12192865-12192884 Msa0348990:CDS 30.0%
GGTAGAAGACTGATTAAATA+AGG + chr3_1:12193600-12193619 Msa0348990:intron 30.0%
TTAAATAAGGAACGTAAGAG+AGG + chr3_1:12193613-12193632 Msa0348990:intron 30.0%
! ATATGGAAATTGCATTGGTA+AGG + chr3_1:12193652-12193671 Msa0348990:intron 30.0%
TCCATGATTTATGGGTTTAT+TGG + chr3_1:12193676-12193695 Msa0348990:intron 30.0%
TCCAATAAACCCATAAATCA+TGG - chr3_1:12193680-12193699 None:intergenic 30.0%
ACAGCCACTATCAATAATTA+GGG - chr3_1:12193709-12193728 None:intergenic 30.0%
TACAGCCACTATCAATAATT+AGG - chr3_1:12193710-12193729 None:intergenic 30.0%
!! ATTATTGATAGTGGCTGTAT+TGG + chr3_1:12193711-12193730 Msa0348990:intron 30.0%
!! TTATTGATAGTGGCTGTATT+GGG + chr3_1:12193712-12193731 Msa0348990:intron 30.0%
!!! AATACTTTTTTTGGCTAACC+GGG + chr3_1:12193832-12193851 Msa0348990:intron 30.0%
! GTTTCGTTTTCCAAAAATAC+GGG - chr3_1:12193879-12193898 None:intergenic 30.0%
AGCATGATCTTATAGATTAG+TGG + chr3_1:12194189-12194208 Msa0348990:intron 30.0%
GATGCAAAGAAAGAAATGTT+TGG + chr3_1:12194379-12194398 Msa0348990:intron 30.0%
AAGAAATGTTTGGTATGTGA+TGG + chr3_1:12194389-12194408 Msa0348990:intron 30.0%
AAATATGTCATTCTCACAAG+AGG - chr3_1:12194477-12194496 None:intergenic 30.0%
AAAGACTTTCATTTGCTTAC+AGG + chr3_1:12194582-12194601 Msa0348990:CDS 30.0%
!! ACTTATCAGAGGTGTTTAAA+TGG + chr3_1:12194927-12194946 Msa0348990:intron 30.0%
!! CTTATCAGAGGTGTTTAAAT+GGG + chr3_1:12194928-12194947 Msa0348990:intron 30.0%
! CTCTAATTTTGTAAACGGTT+AGG + chr3_1:12195260-12195279 Msa0348990:intron 30.0%
ATTATGACCCACAATAAGTT+TGG + chr3_1:12195456-12195475 Msa0348990:intron 30.0%
GAAAGAAAGGTAAAAGATGT+AGG - chr3_1:12195609-12195628 None:intergenic 30.0%
TTCCAAGATACACGAATTTA+CGG + chr3_1:12195723-12195742 Msa0348990:CDS 30.0%
ATCAATGTGATTAACTATCC+CGG + chr3_1:12195797-12195816 Msa0348990:three_prime_UTR 30.0%
!!! AGAAGAAGGTTTTGGTTTGT+TGG - chr3_1:12188824-12188843 None:intergenic 35.0%
GTAACTTCTTTCAACAATGG+AGG + chr3_1:12188866-12188885 Msa0348990:exon 35.0%
TGTTTGATGAAATGCAGCAA+TGG + chr3_1:12189024-12189043 Msa0348990:CDS 35.0%
GTTTGATGAAATGCAGCAAT+GGG + chr3_1:12189025-12189044 Msa0348990:CDS 35.0%
AAATTCGTGAAACCACGTTT+AGG + chr3_1:12189069-12189088 Msa0348990:CDS 35.0%
AGATAATTTACCGGAACTTG+GGG - chr3_1:12189111-12189130 None:intergenic 35.0%
! TATTATAGGTGATGACGTGT+TGG - chr3_1:12189221-12189240 None:intergenic 35.0%
CTACATTGAGTTTATCGTGT+TGG - chr3_1:12189555-12189574 None:intergenic 35.0%
ATTAGAGATCAAGAGAGAGT+AGG + chr3_1:12189640-12189659 Msa0348990:intron 35.0%
TTAGAGATCAAGAGAGAGTA+GGG + chr3_1:12189641-12189660 Msa0348990:intron 35.0%
CTTCATATTGTGGTATTTGC+AGG - chr3_1:12189732-12189751 None:intergenic 35.0%
AATATGAAGAGCAGATCAGA+TGG + chr3_1:12189743-12189762 Msa0348990:intron 35.0%
CTTCTTCTGCTTCTAACAAT+TGG - chr3_1:12189777-12189796 None:intergenic 35.0%
CAATTGTTAGAAGCAGAAGA+AGG + chr3_1:12189775-12189794 Msa0348990:intron 35.0%
ATCTCACCACAAGAAAAAGA+GGG - chr3_1:12190097-12190116 None:intergenic 35.0%
AATCTCACCACAAGAAAAAG+AGG - chr3_1:12190098-12190117 None:intergenic 35.0%
! CTTTTTCTTGTGGTGAGATT+AGG + chr3_1:12190098-12190117 Msa0348990:intron 35.0%
ATTGTTTATGGTGCAGTTTC+TGG + chr3_1:12190128-12190147 Msa0348990:CDS 35.0%
GGCAGATTTGAAAAAGAAAG+AGG + chr3_1:12190470-12190489 Msa0348990:CDS 35.0%
AAAAAGAAAGAGGTAAGGAC+TGG + chr3_1:12190480-12190499 Msa0348990:intron 35.0%
GATCAAGCAATGTTCAAACT+AGG - chr3_1:12190680-12190699 None:intergenic 35.0%
GTTTGAACATTGCTTGATCT+TGG + chr3_1:12190681-12190700 Msa0348990:intron 35.0%
!!! TATGTTTTTTGGTTACCTGG+GGG + chr3_1:12190752-12190771 Msa0348990:intron 35.0%
! AAAAGGTATGTGACTCCATT+AGG - chr3_1:12191197-12191216 None:intergenic 35.0%
! ATGAAATGCTGACCTGTTTT+TGG + chr3_1:12191309-12191328 Msa0348990:intron 35.0%
! ATGACAGCAATTGGAAGTAT+TGG + chr3_1:12191396-12191415 Msa0348990:CDS 35.0%
! GCAATCTTTTCATCATCTGA+AGG - chr3_1:12191447-12191466 None:intergenic 35.0%
AATCACGCGTCAATAATTGA+TGG + chr3_1:12191486-12191505 Msa0348990:CDS 35.0%
! AAACTCACAAGAGTGTATTG+AGG - chr3_1:12191578-12191597 None:intergenic 35.0%
AGTATAGACTGTACCAAAAG+GGG - chr3_1:12191639-12191658 None:intergenic 35.0%
GAAAAATTGTGATAACCGAC+AGG + chr3_1:12191706-12191725 Msa0348990:CDS 35.0%
TGCTACTAGTGAAATAGAAC+TGG + chr3_1:12191739-12191758 Msa0348990:intron 35.0%
CGGATGCAAGTACATTATAT+AGG - chr3_1:12192129-12192148 None:intergenic 35.0%
AAATGCAATAAGGGAAAAGG+AGG + chr3_1:12192348-12192367 Msa0348990:intron 35.0%
! TTATTGCAGCTTGTTTAGCA+TGG + chr3_1:12192437-12192456 Msa0348990:intron 35.0%
GATGATGTAAGACCTCTTAT+TGG + chr3_1:12192528-12192547 Msa0348990:intron 35.0%
ACTAAGGTTAAGACCTAAGA+AGG + chr3_1:12192623-12192642 Msa0348990:intron 35.0%
CTAAGGTTAAGACCTAAGAA+GGG + chr3_1:12192624-12192643 Msa0348990:intron 35.0%
TAGTAGAGTGGGTAATTACT+TGG - chr3_1:12192716-12192735 None:intergenic 35.0%
TTTGTTTGTGGCAAAAATGG+TGG + chr3_1:12192868-12192887 Msa0348990:CDS 35.0%
AAGGATGTGGATATTTGCAT+TGG + chr3_1:12192919-12192938 Msa0348990:CDS 35.0%
! TTATGTTTCTGCACTACATC+AGG + chr3_1:12193054-12193073 Msa0348990:intron 35.0%
TGAATTCTTATAGCACATCG+TGG + chr3_1:12193129-12193148 Msa0348990:intron 35.0%
! TATATTTTCAACTGCTACGC+CGG + chr3_1:12193184-12193203 Msa0348990:CDS 35.0%
TATCAACTCAAGTACAACAC+TGG - chr3_1:12193241-12193260 None:intergenic 35.0%
TACCATGGTATGAAGGATAA+GGG - chr3_1:12193337-12193356 None:intergenic 35.0%
TTGTTGTCTGCAGAAGTAAT+TGG + chr3_1:12193579-12193598 Msa0348990:intron 35.0%
TGGTAAGGTTCCATGATTTA+TGG + chr3_1:12193667-12193686 Msa0348990:intron 35.0%
GGTAAGGTTCCATGATTTAT+GGG + chr3_1:12193668-12193687 Msa0348990:intron 35.0%
AACCCGTTTAAGAGATTAAG+AGG + chr3_1:12193774-12193793 Msa0348990:intron 35.0%
ACCCGTTTAAGAGATTAAGA+GGG + chr3_1:12193775-12193794 Msa0348990:intron 35.0%
ACCCTCTTAATCTCTTAAAC+GGG - chr3_1:12193779-12193798 None:intergenic 35.0%
CACCCTCTTAATCTCTTAAA+CGG - chr3_1:12193780-12193799 None:intergenic 35.0%
TTCCAAAAATACGGGTATAC+CGG - chr3_1:12193871-12193890 None:intergenic 35.0%
TTGGAAAACGAAACACTAGT+CGG + chr3_1:12193885-12193904 Msa0348990:intron 35.0%
GAATCGGAAAATGGTAAGAA+CGG - chr3_1:12194010-12194029 None:intergenic 35.0%
! TTCTTACCATTTTCCGATTC+CGG + chr3_1:12194010-12194029 Msa0348990:intron 35.0%
GTTGCTTGCATTCACAATAT+TGG + chr3_1:12194232-12194251 Msa0348990:intron 35.0%
! ATATGATGGGACTTGTAACA+GGG - chr3_1:12194611-12194630 None:intergenic 35.0%
AACAGGCATTTATTACAAGC+TGG + chr3_1:12194806-12194825 Msa0348990:intron 35.0%
AATAAAAGCTACTAACCTGC+AGG - chr3_1:12194876-12194895 None:intergenic 35.0%
! TGTCTGGCTAGTGAATTTTT+CGG - chr3_1:12195038-12195057 None:intergenic 35.0%
!!! GTGATTTTTTTTGGTGTCCA+TGG + chr3_1:12195228-12195247 Msa0348990:intron 35.0%
AATTAGAGAAAACGAGACCA+TGG - chr3_1:12195248-12195267 None:intergenic 35.0%
!! TGTGGCTTTATTAGTAGTGA+GGG - chr3_1:12195323-12195342 None:intergenic 35.0%
!! ATGTGGCTTTATTAGTAGTG+AGG - chr3_1:12195324-12195343 None:intergenic 35.0%
CTAATAAAGCCACATCTTTC+TGG + chr3_1:12195329-12195348 Msa0348990:intron 35.0%
ATACACTTCCAAACTGATGT+AGG + chr3_1:12195408-12195427 Msa0348990:intron 35.0%
TACACTTCCAAACTGATGTA+GGG + chr3_1:12195409-12195428 Msa0348990:intron 35.0%
TATTGTGGGTCATAATTGCA+TGG - chr3_1:12195452-12195471 None:intergenic 35.0%
!!! CTTATTTTTGGGATAGACCA+AGG - chr3_1:12195487-12195506 None:intergenic 35.0%
TATAGTTCACAATGCACATC+AGG - chr3_1:12195531-12195550 None:intergenic 35.0%
AAAGGTAAAAGATGTAGGCA+TGG - chr3_1:12195604-12195623 None:intergenic 35.0%
AAAACAGAGGCAAGAAAGAA+AGG - chr3_1:12195622-12195641 None:intergenic 35.0%
! TTCTTTCTTGCCTCTGTTTT+AGG + chr3_1:12195622-12195641 Msa0348990:intron 35.0%
TTTCCAAATCTTCCCTTGTA+TGG - chr3_1:12195671-12195690 None:intergenic 35.0%
TTATAGCTCTCCATTCTATC+AGG + chr3_1:12195765-12195784 Msa0348990:exon 35.0%
TGCAATTCATCCTGATAGAA+TGG - chr3_1:12195778-12195797 None:intergenic 35.0%
TAAGGACATTGCATTTGTAG+TGG + chr3_1:12195856-12195875 Msa0348990:three_prime_UTR 35.0%
! GACAAAATAGCTTGTCACTA+TGG - chr3_1:12195902-12195921 None:intergenic 35.0%
!!! GTTTTGGTTTGTTGGTTGGT+TGG - chr3_1:12188816-12188835 None:intergenic 40.0%
!!! GAAGGTTTTGGTTTGTTGGT+TGG - chr3_1:12188820-12188839 None:intergenic 40.0%
!! CATGCAGTTGGTATTGGTAT+TGG - chr3_1:12188894-12188913 None:intergenic 40.0%
CAATACCAATACCAACTGCA+TGG + chr3_1:12188892-12188911 Msa0348990:CDS 40.0%
! AACTGCATGGTGGGAAAAAT+GGG + chr3_1:12188905-12188924 Msa0348990:CDS 40.0%
! AAGTACTCTGAGAGAGTCAA+GGG - chr3_1:12188949-12188968 None:intergenic 40.0%
GTGAAACCACGTTTAGGAAA+TGG + chr3_1:12189075-12189094 Msa0348990:CDS 40.0%
ATGCATCCATTTCCTAAACG+TGG - chr3_1:12189084-12189103 None:intergenic 40.0%
GATGTTACAAGACTGAGTGT+TGG + chr3_1:12189521-12189540 Msa0348990:intron 40.0%
TGAAGATGAGAATGCTATGC+TGG + chr3_1:12189575-12189594 Msa0348990:intron 40.0%
GTGGAAATGGTAGATGAGAA+AGG + chr3_1:12189602-12189621 Msa0348990:intron 40.0%
TAGAGATCAAGAGAGAGTAG+GGG + chr3_1:12189642-12189661 Msa0348990:intron 40.0%
! TTTGGTAATTTGGGTGTGTG+TGG + chr3_1:12189702-12189721 Msa0348990:intron 40.0%
CTGATCTGCTCTTCATATTG+TGG - chr3_1:12189742-12189761 None:intergenic 40.0%
! AAGTCTTATCACACTAGGTG+GGG - chr3_1:12189895-12189914 None:intergenic 40.0%
! CAAGTCTTATCACACTAGGT+GGG - chr3_1:12189896-12189915 None:intergenic 40.0%
! TTTCTGGTGATGATGAAGCA+GGG + chr3_1:12190144-12190163 Msa0348990:CDS 40.0%
TGTTCTTGAGCTGCCTAATA+TGG - chr3_1:12190378-12190397 None:intergenic 40.0%
TATTAGGCAGCTCAAGAACA+TGG + chr3_1:12190378-12190397 Msa0348990:intron 40.0%
ATTAGGCAGCTCAAGAACAT+GGG + chr3_1:12190379-12190398 Msa0348990:intron 40.0%
CTCTAGCTGCCTATGATAAT+TGG - chr3_1:12190442-12190461 None:intergenic 40.0%
GAGAACTCCTTAAACTGTTC+TGG + chr3_1:12190508-12190527 Msa0348990:intron 40.0%
AAAACAACAACAATTCCCCC+AGG - chr3_1:12190770-12190789 None:intergenic 40.0%
AAGCACGTGTGAGACTATTT+GGG - chr3_1:12191000-12191019 None:intergenic 40.0%
TAAGCACGTGTGAGACTATT+TGG - chr3_1:12191001-12191020 None:intergenic 40.0%
AAGAAGGCAATCCTATAGCA+TGG - chr3_1:12191343-12191362 None:intergenic 40.0%
CAAATCCTGTAGGACAAAGA+AGG - chr3_1:12191359-12191378 None:intergenic 40.0%
ATATTGGCAGCAAATCCTGT+AGG - chr3_1:12191369-12191388 None:intergenic 40.0%
!! TACAGGATTTGCTGCCAATA+TGG + chr3_1:12191368-12191387 Msa0348990:CDS 40.0%
ACTTCCAATTGCTGTCATCA+AGG - chr3_1:12191394-12191413 None:intergenic 40.0%
!! AGTATTGGTTCTCTCTTAGC+TGG + chr3_1:12191411-12191430 Msa0348990:CDS 40.0%
!! GTATTGGTTCTCTCTTAGCT+GGG + chr3_1:12191412-12191431 Msa0348990:CDS 40.0%
! TCACAAGAGTGTATTGAGGT+GGG - chr3_1:12191574-12191593 None:intergenic 40.0%
! TTCATTCCCTATTCCCCTTT+TGG + chr3_1:12191623-12191642 Msa0348990:intron 40.0%
ACTGTACCAAAAGGGGAATA+GGG - chr3_1:12191632-12191651 None:intergenic 40.0%
TAGCAGAATGACTAACCTGT+CGG - chr3_1:12191724-12191743 None:intergenic 40.0%
! AATTAGTGGATCACACGTGA+TGG + chr3_1:12191889-12191908 Msa0348990:intron 40.0%
! CAAGCATTGTCTCTTCTCTA+CGG - chr3_1:12192149-12192168 None:intergenic 40.0%
ACAAAAAGCCATGCTTCTTG+CGG - chr3_1:12192500-12192519 None:intergenic 40.0%
!! ATGTATATGGTTCTGATCCC+CGG + chr3_1:12192600-12192619 Msa0348990:intron 40.0%
TTAGGTCTTAACCTTAGTCC+GGG - chr3_1:12192621-12192640 None:intergenic 40.0%
CTTAGGTCTTAACCTTAGTC+CGG - chr3_1:12192622-12192641 None:intergenic 40.0%
AGTGGGTAATTACTTGGAGT+GGG - chr3_1:12192710-12192729 None:intergenic 40.0%
TGAGGAGTTCAATTGTGAGA+AGG + chr3_1:12192900-12192919 Msa0348990:CDS 40.0%
GTTCAATTGTGAGAAGGATG+TGG + chr3_1:12192906-12192925 Msa0348990:CDS 40.0%
TGCAAGCTATAAATCCTCCA+TGG - chr3_1:12192969-12192988 None:intergenic 40.0%
! ATGGAGGATTTATAGCTTGC+AGG + chr3_1:12192968-12192987 Msa0348990:CDS 40.0%
GTAAACTATCTGTGTACACG+TGG + chr3_1:12192990-12193009 Msa0348990:intron 40.0%
CTACCATGGTATGAAGGATA+AGG - chr3_1:12193338-12193357 None:intergenic 40.0%
GTTTGTCTACCATGGTATGA+AGG - chr3_1:12193344-12193363 None:intergenic 40.0%
CTCGAGATCCTAAGTAAGAT+CGG + chr3_1:12193363-12193382 Msa0348990:intron 40.0%
TCGAGATCCTAAGTAAGATC+GGG + chr3_1:12193364-12193383 Msa0348990:intron 40.0%
! GAAGTTGGGTGCTATGAATA+TGG + chr3_1:12193635-12193654 Msa0348990:intron 40.0%
TCCAAAAATACGGGTATACC+GGG - chr3_1:12193870-12193889 None:intergenic 40.0%
TGGAAAACGAAACACTAGTC+GGG + chr3_1:12193886-12193905 Msa0348990:intron 40.0%
ATAACGATCGGTATGAAGCA+TGG - chr3_1:12194112-12194131 None:intergenic 40.0%
AGATCATGCTAGAAGTGAGA+GGG - chr3_1:12194179-12194198 None:intergenic 40.0%
AAGATCATGCTAGAAGTGAG+AGG - chr3_1:12194180-12194199 None:intergenic 40.0%
TGTGAATGCAAGCAACAATC+AGG - chr3_1:12194228-12194247 None:intergenic 40.0%
GACTGCTTGAGTTCATATGA+AGG + chr3_1:12194254-12194273 Msa0348990:intron 40.0%
GCAAATGAAAGTCTTTCACC+CGG - chr3_1:12194578-12194597 None:intergenic 40.0%
! GATATGATGGGACTTGTAAC+AGG - chr3_1:12194612-12194631 None:intergenic 40.0%
CCAACGATAAGGGATATGAT+GGG - chr3_1:12194624-12194643 None:intergenic 40.0%
! ACTTTCCCTCCCATCATTTT+TGG + chr3_1:12194691-12194710 Msa0348990:intron 40.0%
CATTGGGCACCAAAAATGAT+GGG - chr3_1:12194703-12194722 None:intergenic 40.0%
TCATTGGGCACCAAAAATGA+TGG - chr3_1:12194704-12194723 None:intergenic 40.0%
!! ATGATCAGCTTCTGAAGTAG+TGG - chr3_1:12194748-12194767 None:intergenic 40.0%
!! GCTCGTAACTGTTTCTACAT+TGG + chr3_1:12195002-12195021 Msa0348990:intron 40.0%
!! GCTAGTGAATTTTTCGGCTA+GGG - chr3_1:12195032-12195051 None:intergenic 40.0%
TTGACTGAGTCATTTGTGTC+TGG - chr3_1:12195054-12195073 None:intergenic 40.0%
! TTTTCGTGAGAAGCGACTAA+AGG + chr3_1:12195147-12195166 Msa0348990:intron 40.0%
AGCGACTAAAGGATAGAGTA+AGG + chr3_1:12195158-12195177 Msa0348990:intron 40.0%
GCGACTAAAGGATAGAGTAA+GGG + chr3_1:12195159-12195178 Msa0348990:intron 40.0%
AGGATAGAGTAAGGGATAAC+TGG + chr3_1:12195167-12195186 Msa0348990:intron 40.0%
! GCTTTATTAGTAGTGAGGGT+GGG - chr3_1:12195319-12195338 None:intergenic 40.0%
! TCTTTCTGGAAGTGCACAAT+CGG + chr3_1:12195343-12195362 Msa0348990:intron 40.0%
GGTTAGGCCAAACTTATTGT+GGG - chr3_1:12195466-12195485 None:intergenic 40.0%
AGGTTAGGCCAAACTTATTG+TGG - chr3_1:12195467-12195486 None:intergenic 40.0%
CAATAAGTTTGGCCTAACCT+TGG + chr3_1:12195467-12195486 Msa0348990:intron 40.0%
!!! TTTTGGGATAGACCAAGGTT+AGG - chr3_1:12195482-12195501 None:intergenic 40.0%
!! TGGCTGGACAGCTTATTTTT+GGG - chr3_1:12195498-12195517 None:intergenic 40.0%
!! ATGGCTGGACAGCTTATTTT+TGG - chr3_1:12195499-12195518 None:intergenic 40.0%
AGTCCATACAAGGGAAGATT+TGG + chr3_1:12195665-12195684 Msa0348990:CDS 40.0%
ATTGATGCAATTCGAGAGTG+CGG - chr3_1:12195703-12195722 None:intergenic 40.0%
AGCCGTAAATTCGTGTATCT+TGG - chr3_1:12195728-12195747 None:intergenic 40.0%
AGACTCAATAATGCTGGCAA+TGG - chr3_1:12195832-12195851 None:intergenic 40.0%
!! GGTTTGTTGGTTGGTTGGTT+TGG - chr3_1:12188811-12188830 None:intergenic 45.0%
TACCAATACCAACTGCATGG+TGG + chr3_1:12188895-12188914 Msa0348990:CDS 45.0%
ACCAATACCAACTGCATGGT+GGG + chr3_1:12188896-12188915 Msa0348990:CDS 45.0%
! CATTTTTCCCACCATGCAGT+TGG - chr3_1:12188906-12188925 None:intergenic 45.0%
! CAACTGCATGGTGGGAAAAA+TGG + chr3_1:12188904-12188923 Msa0348990:CDS 45.0%
! GAAGTACTCTGAGAGAGTCA+AGG - chr3_1:12188950-12188969 None:intergenic 45.0%
ACCTCACGTTGGAGACAAAT+GGG - chr3_1:12188984-12189003 None:intergenic 45.0%
TACCTCACGTTGGAGACAAA+TGG - chr3_1:12188985-12189004 None:intergenic 45.0%
CATCATCATCTACCTCACGT+TGG - chr3_1:12188995-12189014 None:intergenic 45.0%
! GGTAGATGATGATGCGTTTC+AGG + chr3_1:12189001-12189020 Msa0348990:CDS 45.0%
ATGGGATCGTTCTTCTGTTG+AGG + chr3_1:12189043-12189062 Msa0348990:CDS 45.0%
ATGCATGATACCCCAAGTTC+CGG + chr3_1:12189098-12189117 Msa0348990:CDS 45.0%
CGGTGTGTTATGTCTTGTGT+GGG - chr3_1:12189186-12189205 None:intergenic 45.0%
CCACACAAGACATAACACAC+CGG + chr3_1:12189184-12189203 Msa0348990:intron 45.0%
AGAATGCTATGCTGGATGAG+TGG + chr3_1:12189583-12189602 Msa0348990:intron 45.0%
CTATGCTGGATGAGTGGAAA+TGG + chr3_1:12189589-12189608 Msa0348990:intron 45.0%
! CCAAGTCTTATCACACTAGG+TGG - chr3_1:12189897-12189916 None:intergenic 45.0%
CCACCTAGTGTGATAAGACT+TGG + chr3_1:12189894-12189913 Msa0348990:intron 45.0%
! CGACCAAGTCTTATCACACT+AGG - chr3_1:12189900-12189919 None:intergenic 45.0%
!! GTTTCTGGTGATGATGAAGC+AGG + chr3_1:12190143-12190162 Msa0348990:CDS 45.0%
TTCCCATCCGACTATTGGAA+AGG + chr3_1:12190229-12190248 Msa0348990:CDS 45.0%
AGCCTTTCCAATAGTCGGAT+GGG - chr3_1:12190234-12190253 None:intergenic 45.0%
TATTGGAAAGGCTGCTGCAA+AGG + chr3_1:12190241-12190260 Msa0348990:CDS 45.0%
CAAATAAGAGCAGAACCCCT+TGG - chr3_1:12190411-12190430 None:intergenic 45.0%
! AGGGGTTCTGCTCTTATTTG+TGG + chr3_1:12190411-12190430 Msa0348990:CDS 45.0%
ATGGGGGAAAGTGATGTTCA+AGG + chr3_1:12190724-12190743 Msa0348990:intron 45.0%
GATTGCCTTCTTTGTCCTAC+AGG + chr3_1:12191351-12191370 Msa0348990:CDS 45.0%
TGCTGTCATCAAGGCCATAT+TGG - chr3_1:12191385-12191404 None:intergenic 45.0%
! ATGGCCTTGATGACAGCAAT+TGG + chr3_1:12191387-12191406 Msa0348990:CDS 45.0%
ATGGTATTCGTCTTGCTGAG+CGG + chr3_1:12191505-12191524 Msa0348990:CDS 45.0%
! CTCACAAGAGTGTATTGAGG+TGG - chr3_1:12191575-12191594 None:intergenic 45.0%
GACTGTACCAAAAGGGGAAT+AGG - chr3_1:12191633-12191652 None:intergenic 45.0%
! CAGTGATGGTGTGTGCATTA+TGG + chr3_1:12192404-12192423 Msa0348990:intron 45.0%
! TGCAGCTTGTTTAGCATGGA+TGG + chr3_1:12192441-12192460 Msa0348990:intron 45.0%
! GCAGCTTGTTTAGCATGGAT+GGG + chr3_1:12192442-12192461 Msa0348990:intron 45.0%
! CAGCTTGTTTAGCATGGATG+GGG + chr3_1:12192443-12192462 Msa0348990:intron 45.0%
AGTTCTGCAAGCTCAACCAT+TGG - chr3_1:12192477-12192496 None:intergenic 45.0%
TAGGTCTTAACCTTAGTCCG+GGG - chr3_1:12192620-12192639 None:intergenic 45.0%
GAGTGGGTAATTACTTGGAG+TGG - chr3_1:12192711-12192730 None:intergenic 45.0%
AAACAAATGTCCCATGAGCC+TGG - chr3_1:12192855-12192874 None:intergenic 45.0%
GCTCATGGGACATTTGTTTG+TGG + chr3_1:12192856-12192875 Msa0348990:CDS 45.0%
GTTTGTGGCAAAAATGGTGG+TGG + chr3_1:12192871-12192890 Msa0348990:CDS 45.0%
GGTACACTAAGTAAAGCTGC+CGG + chr3_1:12192940-12192959 Msa0348990:CDS 45.0%
TATAAATCCTCCATGGCAGC+CGG - chr3_1:12192962-12192981 None:intergenic 45.0%
TGCCCTTATCCTTCATACCA+TGG + chr3_1:12193332-12193351 Msa0348990:intron 45.0%
GATCTCGAGTTTGTCTACCA+TGG - chr3_1:12193352-12193371 None:intergenic 45.0%
GATCCTAAGTAAGATCGGGA+AGG + chr3_1:12193368-12193387 Msa0348990:intron 45.0%
AGGAACGTAAGAGAGGAAGT+TGG + chr3_1:12193620-12193639 Msa0348990:intron 45.0%
GGAACGTAAGAGAGGAAGTT+GGG + chr3_1:12193621-12193640 Msa0348990:intron 45.0%
AAAATACGGGTATACCGGGT+CGG - chr3_1:12193866-12193885 None:intergenic 45.0%
! ACCCGGTATACCCGTATTTT+TGG + chr3_1:12193866-12193885 Msa0348990:intron 45.0%
AGGTTGGAAACCCAGAAAAC+CGG - chr3_1:12193932-12193951 None:intergenic 45.0%
TCTGGGTTTCCAACCTAACT+CGG + chr3_1:12193936-12193955 Msa0348990:intron 45.0%
GGAAAATGGTAAGAACGGCT+TGG - chr3_1:12194005-12194024 None:intergenic 45.0%
ATCTGGACCGTAGAATCGTA+CGG - chr3_1:12194075-12194094 None:intergenic 45.0%
TGGTAGACAAACTCTCGATC+TGG - chr3_1:12194092-12194111 None:intergenic 45.0%
! TTTTGCAGCTGCTGTTAGAG+TGG + chr3_1:12194515-12194534 Msa0348990:intron 45.0%
GAGTGGCAAAACATGAGACA+TGG + chr3_1:12194532-12194551 Msa0348990:CDS 45.0%
ACATGAGACATGGCGTAGAA+AGG + chr3_1:12194542-12194561 Msa0348990:CDS 45.0%
! GTAGAAAGGCCATTTGGAAC+CGG + chr3_1:12194556-12194575 Msa0348990:CDS 45.0%
! TAGAAAGGCCATTTGGAACC+GGG + chr3_1:12194557-12194576 Msa0348990:CDS 45.0%
CCCATCATATCCCTTATCGT+TGG + chr3_1:12194621-12194640 Msa0348990:CDS 45.0%
GCCAACGATAAGGGATATGA+TGG - chr3_1:12194625-12194644 None:intergenic 45.0%
GTCTTCAGTGCCAACGATAA+GGG - chr3_1:12194634-12194653 None:intergenic 45.0%
TGTCTTCAGTGCCAACGATA+AGG - chr3_1:12194635-12194654 None:intergenic 45.0%
! AATGATGGGAGGGAAAGTGA+GGG - chr3_1:12194689-12194708 None:intergenic 45.0%
! AAATGATGGGAGGGAAAGTG+AGG - chr3_1:12194690-12194709 None:intergenic 45.0%
ACTTCAGAAGCTGATCATGC+AGG + chr3_1:12194750-12194769 Msa0348990:intron 45.0%
!! GGCTAGTGAATTTTTCGGCT+AGG - chr3_1:12195033-12195052 None:intergenic 45.0%
!! GGCTTTATTAGTAGTGAGGG+TGG - chr3_1:12195320-12195339 None:intergenic 45.0%
TGTGCACTTCCAGAAAGATG+TGG - chr3_1:12195341-12195360 None:intergenic 45.0%
ACTTCCAAACTGATGTAGGG+AGG + chr3_1:12195412-12195431 Msa0348990:intron 45.0%
CTTCCAAACTGATGTAGGGA+GGG + chr3_1:12195413-12195432 Msa0348990:intron 45.0%
AATAAGCTGTCCAGCCATTG+AGG + chr3_1:12195501-12195520 Msa0348990:intron 45.0%
GTTCACAATGCACATCAGGT+CGG - chr3_1:12195527-12195546 None:intergenic 45.0%
ACACGAATTTACGGCTGCAA+TGG + chr3_1:12195732-12195751 Msa0348990:CDS 45.0%
!! ATATAAAAAAGATATTAAAA+GGG - chr3_1:12189366-12189385 None:intergenic 5.0%
!! TATATAAAAAAGATATTAAA+AGG - chr3_1:12189367-12189386 None:intergenic 5.0%
!!! AATATCTTTTTTATATATAA+AGG + chr3_1:12189370-12189389 Msa0348990:intron 5.0%
!!! TATATATGAATTTTTAAATT+TGG - chr3_1:12193444-12193463 None:intergenic 5.0%
! TCCCACCATGCAGTTGGTAT+TGG - chr3_1:12188900-12188919 None:intergenic 50.0%
GTGGGAAAAATGGGTCGAAG+AGG + chr3_1:12188914-12188933 Msa0348990:CDS 50.0%
ACCCATTTGTCTCCAACGTG+AGG + chr3_1:12188980-12188999 Msa0348990:CDS 50.0%
CCGGTGTGTTATGTCTTGTG+TGG - chr3_1:12189187-12189206 None:intergenic 50.0%
! CGTGTTGGCATTGTCATGTC+CGG - chr3_1:12189206-12189225 None:intergenic 50.0%
GACACAAGTCGAACATCACC+AGG + chr3_1:12189300-12189319 Msa0348990:intron 50.0%
AAGTCGAACATCACCAGGCA+CGG + chr3_1:12189305-12189324 Msa0348990:intron 50.0%
CTTATCACACTAGGTGGGGT+TGG - chr3_1:12189891-12189910 None:intergenic 50.0%
CAATAGTCGGATGGGAACTC+AGG - chr3_1:12190226-12190245 None:intergenic 50.0%
CTGAGTTCCCATCCGACTAT+TGG + chr3_1:12190224-12190243 Msa0348990:CDS 50.0%
CAGCCTTTCCAATAGTCGGA+TGG - chr3_1:12190235-12190254 None:intergenic 50.0%
GCAGCAGCCTTTCCAATAGT+CGG - chr3_1:12190239-12190258 None:intergenic 50.0%
GCAGCTCAAGAACATGGGAT+GGG + chr3_1:12190384-12190403 Msa0348990:CDS 50.0%
AAGAACATGGGATGGGACCA+AGG + chr3_1:12190391-12190410 Msa0348990:CDS 50.0%
AGAACATGGGATGGGACCAA+GGG + chr3_1:12190392-12190411 Msa0348990:CDS 50.0%
TAGGCAGCTAGAGTCGAGTT+TGG + chr3_1:12190449-12190468 Msa0348990:CDS 50.0%
GTCTTGCTGAGCGGCAAAAA+GGG + chr3_1:12191514-12191533 Msa0348990:CDS 50.0%
TCTTGCTGAGCGGCAAAAAG+GGG + chr3_1:12191515-12191534 Msa0348990:CDS 50.0%
GGTACGGAATCTGTACTCGA+TGG - chr3_1:12192663-12192682 None:intergenic 50.0%
AATGTGCGTTTCCAGGCTCA+TGG + chr3_1:12192841-12192860 Msa0348990:intron 50.0%
ATGTGCGTTTCCAGGCTCAT+GGG + chr3_1:12192842-12192861 Msa0348990:intron 50.0%
!! AAATGGTGGTGGTGTTGCTG+AGG + chr3_1:12192882-12192901 Msa0348990:CDS 50.0%
GGTCCTTCCCGATCTTACTT+AGG - chr3_1:12193374-12193393 None:intergenic 50.0%
GGACCCATGAGATCGTGAAT+CGG + chr3_1:12193389-12193408 Msa0348990:intron 50.0%
GACCCATGAGATCGTGAATC+GGG + chr3_1:12193390-12193409 Msa0348990:intron 50.0%
ACCCATGAGATCGTGAATCG+GGG + chr3_1:12193391-12193410 Msa0348990:intron 50.0%
TGAATCGGGGGATCGTAACA+CGG + chr3_1:12193404-12193423 Msa0348990:intron 50.0%
AAATACGGGTATACCGGGTC+GGG - chr3_1:12193865-12193884 None:intergenic 50.0%
GGTTGGAAACCCAGAAAACC+GGG - chr3_1:12193931-12193950 None:intergenic 50.0%
TAGATCCAGCCGAGTTAGGT+TGG - chr3_1:12193948-12193967 None:intergenic 50.0%
AACGTAGATCCAGCCGAGTT+AGG - chr3_1:12193952-12193971 None:intergenic 50.0%
CGTGGAACCGTACGATTCTA+CGG + chr3_1:12194065-12194084 Msa0348990:intron 50.0%
CATGGCGTAGAAAGGCCATT+TGG + chr3_1:12194550-12194569 Msa0348990:CDS 50.0%
GTCTTTCACCCGGTTCCAAA+TGG - chr3_1:12194568-12194587 None:intergenic 50.0%
!! ACAAAGCACTGCAAGCAAGC+CGG + chr3_1:12194652-12194671 Msa0348990:CDS 50.0%
! GGGCACCAAAAATGATGGGA+GGG - chr3_1:12194699-12194718 None:intergenic 50.0%
! TGGGCACCAAAAATGATGGG+AGG - chr3_1:12194700-12194719 None:intergenic 50.0%
GTGGTCTGATTGCAGTCACA+TGG - chr3_1:12194835-12194854 None:intergenic 50.0%
ACTAACCTGCAGGAGTTAGG+AGG - chr3_1:12194866-12194885 None:intergenic 50.0%
GCTACTAACCTGCAGGAGTT+AGG - chr3_1:12194869-12194888 None:intergenic 50.0%
!! GTGAATTTTTCGGCTAGGGC+AGG - chr3_1:12195028-12195047 None:intergenic 50.0%
ACTCCCTCCCTACATCAGTT+TGG - chr3_1:12195419-12195438 None:intergenic 50.0%
CCACTCGCAACCTAAAACAG+AGG - chr3_1:12195635-12195654 None:intergenic 50.0%
!!! CCTCTGTTTTAGGTTGCGAG+TGG + chr3_1:12195632-12195651 Msa0348990:intron 50.0%
! CCTTGTATGGACTGCACTGA+GGG - chr3_1:12195658-12195677 None:intergenic 50.0%
CCTCAGTGCAGTCCATACAA+GGG + chr3_1:12195656-12195675 Msa0348990:CDS 50.0%
TGGCAATGGTGTACTGTTCC+GGG - chr3_1:12195818-12195837 None:intergenic 50.0%
CTGGCAATGGTGTACTGTTC+CGG - chr3_1:12195819-12195838 None:intergenic 50.0%
CACACTCTGTAATCCGTGCC+TGG - chr3_1:12189321-12189340 None:intergenic 55.0%
GGCAGCTCAAGAACATGGGA+TGG + chr3_1:12190383-12190402 Msa0348990:intron 55.0%
GAACATGGGATGGGACCAAG+GGG + chr3_1:12190393-12190412 Msa0348990:CDS 55.0%
CGTCTTGCTGAGCGGCAAAA+AGG + chr3_1:12191513-12191532 Msa0348990:CDS 55.0%
GGATGGGGACTTTGCACCAA+TGG + chr3_1:12192458-12192477 Msa0348990:CDS 55.0%
GCAGAACTCCGCAAGAAGCA+TGG + chr3_1:12192489-12192508 Msa0348990:CDS 55.0%
!! TGGTTCTGATCCCCGGACTA+AGG + chr3_1:12192607-12192626 Msa0348990:intron 55.0%
CCCCCGATTCACGATCTCAT+GGG - chr3_1:12193395-12193414 None:intergenic 55.0%
CCCATGAGATCGTGAATCGG+GGG + chr3_1:12193392-12193411 Msa0348990:intron 55.0%
TCCCCCGATTCACGATCTCA+TGG - chr3_1:12193396-12193415 None:intergenic 55.0%
AACCCAGAAAACCGGGTTCG+CGG - chr3_1:12193924-12193943 None:intergenic 55.0%
GGTTTCCAACCTAACTCGGC+TGG + chr3_1:12193940-12193959 Msa0348990:intron 55.0%
AGGTGGCCGGAATCGGAAAA+TGG - chr3_1:12194019-12194038 None:intergenic 55.0%
TGCTCATAGGTGGCCGGAAT+CGG - chr3_1:12194026-12194045 None:intergenic 55.0%
TCTTCGTGCTCATAGGTGGC+CGG - chr3_1:12194032-12194051 None:intergenic 55.0%
GACCTCTTCGTGCTCATAGG+TGG - chr3_1:12194036-12194055 None:intergenic 55.0%
CCTGACCTCTTCGTGCTCAT+AGG - chr3_1:12194039-12194058 None:intergenic 55.0%
CCTATGAGCACGAAGAGGTC+AGG + chr3_1:12194036-12194055 Msa0348990:intron 55.0%
GAAGAGGTCAGGCAAGATCG+TGG + chr3_1:12194047-12194066 Msa0348990:intron 55.0%
AGTGAGGGAGGGATGCATAC+CGG - chr3_1:12194674-12194693 None:intergenic 55.0%
ATGGGAGGGAAAGTGAGGGA+GGG - chr3_1:12194685-12194704 None:intergenic 55.0%
! GAGTTAGGAGGCACAGTTGG+TGG - chr3_1:12194854-12194873 None:intergenic 55.0%
! CAGGAGTTAGGAGGCACAGT+TGG - chr3_1:12194857-12194876 None:intergenic 55.0%
CCCTCAGTGCAGTCCATACA+AGG + chr3_1:12195655-12195674 Msa0348990:CDS 55.0%
! CCCTTGTATGGACTGCACTG+AGG - chr3_1:12195659-12195678 None:intergenic 55.0%
! AGTAAAGCTGCCGGCTGCCA+TGG + chr3_1:12192949-12192968 Msa0348990:CDS 60.0%
GCAGCAGCAGCAACTGGAAC+CGG - chr3_1:12193206-12193225 None:intergenic 60.0%
CCATGAGCAGCAGCAGCAAC+TGG - chr3_1:12193212-12193231 None:intergenic 60.0%
CCAGTTGCTGCTGCTGCTCA+TGG + chr3_1:12193209-12193228 Msa0348990:CDS 60.0%
! ACCCGCGAACCCGGTTTTCT+GGG + chr3_1:12193919-12193938 Msa0348990:intron 60.0%
ACCCAGAAAACCGGGTTCGC+GGG - chr3_1:12193923-12193942 None:intergenic 60.0%
CTACGTTACCACCGCGTCCA+CGG + chr3_1:12193965-12193984 Msa0348990:intron 60.0%
GGCCACCTATGAGCACGAAG+AGG + chr3_1:12194031-12194050 Msa0348990:intron 60.0%
GATGGGAGGGAAAGTGAGGG+AGG - chr3_1:12194686-12194705 None:intergenic 60.0%
CTGTGCCTCCTAACTCCTGC+AGG + chr3_1:12194858-12194877 Msa0348990:CDS 60.0%
ATCAGGTCGGCCTCAATGGC+TGG - chr3_1:12195514-12195533 None:intergenic 60.0%
GCACATCAGGTCGGCCTCAA+TGG - chr3_1:12195518-12195537 None:intergenic 60.0%
! AAAGCTGCCGGCTGCCATGG+AGG + chr3_1:12192952-12192971 Msa0348990:CDS 65.0%
CGCAAAACGACCCGCGAACC+CGG + chr3_1:12193910-12193929 Msa0348990:intron 65.0%
! GACCCGCGAACCCGGTTTTC+TGG + chr3_1:12193918-12193937 Msa0348990:intron 65.0%
ACCGGGTCACGAACCCGACC+CGG + chr3_1:12193849-12193868 Msa0348990:intron 70.0%
ACCGGGTCGGGTTCGTGACC+CGG - chr3_1:12193853-12193872 None:intergenic 70.0%
ACCGCGTCCACGGCTTTGCG+CGG + chr3_1:12193975-12193994 Msa0348990:intron 70.0%
TGGATCGCCGCGCAAAGCCG+TGG - chr3_1:12193985-12194004 None:intergenic 70.0%
GCGCAAAGCCGTGGACGCGG+TGG - chr3_1:12193976-12193995 None:intergenic 75.0%
GCCGCGCAAAGCCGTGGACG+CGG - chr3_1:12193979-12193998 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 12188807 12195974 12188807 ID=Msa0348990;Name=Msa0348990
chr3_1 mRNA 12188807 12195974 12188807 ID=Msa0348990-mRNA-1;Parent=Msa0348990;Name=Msa0348990-mRNA-1;_AED=0.13;_eAED=0.13;_QI=75|1|1|1|1|1|11|204|475
chr3_1 exon 12188807 12189119 12188807 ID=Msa0348990-mRNA-1:exon:3176;Parent=Msa0348990-mRNA-1
chr3_1 exon 12190120 12190262 12190120 ID=Msa0348990-mRNA-1:exon:3177;Parent=Msa0348990-mRNA-1
chr3_1 exon 12190384 12190491 12190384 ID=Msa0348990-mRNA-1:exon:3178;Parent=Msa0348990-mRNA-1
chr3_1 exon 12191351 12191589 12191351 ID=Msa0348990-mRNA-1:exon:3179;Parent=Msa0348990-mRNA-1
chr3_1 exon 12191686 12191727 12191686 ID=Msa0348990-mRNA-1:exon:3180;Parent=Msa0348990-mRNA-1
chr3_1 exon 12192446 12192533 12192446 ID=Msa0348990-mRNA-1:exon:3181;Parent=Msa0348990-mRNA-1
chr3_1 exon 12192856 12192989 12192856 ID=Msa0348990-mRNA-1:exon:3182;Parent=Msa0348990-mRNA-1
chr3_1 exon 12193142 12193230 12193142 ID=Msa0348990-mRNA-1:exon:3183;Parent=Msa0348990-mRNA-1
chr3_1 exon 12194523 12194673 12194523 ID=Msa0348990-mRNA-1:exon:3184;Parent=Msa0348990-mRNA-1
chr3_1 exon 12194811 12194879 12194811 ID=Msa0348990-mRNA-1:exon:3185;Parent=Msa0348990-mRNA-1
chr3_1 exon 12195644 12195974 12195644 ID=Msa0348990-mRNA-1:exon:3186;Parent=Msa0348990-mRNA-1
chr3_1 five_prime_UTR 12188807 12188881 12188807 ID=Msa0348990-mRNA-1:five_prime_utr;Parent=Msa0348990-mRNA-1
chr3_1 CDS 12188882 12189119 12188882 ID=Msa0348990-mRNA-1:cds;Parent=Msa0348990-mRNA-1
chr3_1 CDS 12190120 12190262 12190120 ID=Msa0348990-mRNA-1:cds;Parent=Msa0348990-mRNA-1
chr3_1 CDS 12190384 12190491 12190384 ID=Msa0348990-mRNA-1:cds;Parent=Msa0348990-mRNA-1
chr3_1 CDS 12191351 12191589 12191351 ID=Msa0348990-mRNA-1:cds;Parent=Msa0348990-mRNA-1
chr3_1 CDS 12191686 12191727 12191686 ID=Msa0348990-mRNA-1:cds;Parent=Msa0348990-mRNA-1
chr3_1 CDS 12192446 12192533 12192446 ID=Msa0348990-mRNA-1:cds;Parent=Msa0348990-mRNA-1
chr3_1 CDS 12192856 12192989 12192856 ID=Msa0348990-mRNA-1:cds;Parent=Msa0348990-mRNA-1
chr3_1 CDS 12193142 12193230 12193142 ID=Msa0348990-mRNA-1:cds;Parent=Msa0348990-mRNA-1
chr3_1 CDS 12194523 12194673 12194523 ID=Msa0348990-mRNA-1:cds;Parent=Msa0348990-mRNA-1
chr3_1 CDS 12194811 12194879 12194811 ID=Msa0348990-mRNA-1:cds;Parent=Msa0348990-mRNA-1
chr3_1 CDS 12195644 12195770 12195644 ID=Msa0348990-mRNA-1:cds;Parent=Msa0348990-mRNA-1
chr3_1 three_prime_UTR 12195771 12195974 12195771 ID=Msa0348990-mRNA-1:three_prime_utr;Parent=Msa0348990-mRNA-1
Gene Sequence

>Msa0348990

ATGGAGGCACCAATACCAATACCAACTGCATGGTGGGAAAAATGGGTCGAAGAGGCACTAACAACCCTTGACTCTCTCAGAGTACTTCGATCTCTAAGACCCATTTGTCTCCAACGTGAGGTAGATGATGATGCGTTTCAGGTGTTTGATGAAATGCAGCAATGGGATCGTTCTTCTGTTGAGGTTCAAATTCGTGAAACCACGTTTAGGAAATGGATGCATGATACCCCAAGTTCCGGTGAAGAGATTGTTTATGGTGCAGTTTCTGGTGATGATGAAGCAGGGTTATGTCATGAGAAGTTTAGAAAATTAATTTTGTTTTCTGGAAATGATTATTTAGGCCTGAGTTCCCATCCGACTATTGGAAAGGCTGCTGCAAAGGCAGCTCAAGAACATGGGATGGGACCAAGGGGTTCTGCTCTTATTTGTGGATATACCAATTATCATAGGCAGCTAGAGTCGAGTTTGGCAGATTTGAAAAAGAAAGAGGATTGCCTTCTTTGTCCTACAGGATTTGCTGCCAATATGGCCTTGATGACAGCAATTGGAAGTATTGGTTCTCTCTTAGCTGGGAATAGCATACCTTCAGATGATGAAAAGATTGCTATCTTTTCTGATGCATTAAATCACGCGTCAATAATTGATGGTATTCGTCTTGCTGAGCGGCAAAAAGGGGTTAAACCGTACATATATAGACATTGTGACATGTCCCACCTCAATACACTCTTATCTCATTGCAGTATGAAGAGAAAAATTGTGATAACCGACAGCTTGTTTAGCATGGATGGGGACTTTGCACCAATGGTTGAGCTTGCAGAACTCCGCAAGAAGCATGGCTTTTTGTTAGTCATCGATGATGCTCATGGGACATTTGTTTGTGGCAAAAATGGTGGTGGTGTTGCTGAGGAGTTCAATTGTGAGAAGGATGTGGATATTTGCATTGGTACACTAAGTAAAGCTGCCGGCTGCCATGGAGGATTTATAGCTTGCAGCACATCGTGGAAGTTATTAATACAGTCAAGAGGTCGTTCATTTATATTTTCAACTGCTACGCCGGTTCCAGTTGCTGCTGCTGCTCATGCTGCTGTTAGAGTGGCAAAACATGAGACATGGCGTAGAAAGGCCATTTGGAACCGGGTGAAAGACTTTCATTTGCTTACAGGAATCCCTGTTACAAGTCCCATCATATCCCTTATCGTTGGCACTGAAGACAAAGCACTGCAAGCAAGCCGGCATTTATTACAAGCTGGCTTCCATGTGACTGCAATCAGACCACCAACTGTGCCTCCTAACTCCTGCAGGTTGCGAGTGGCCCTCAGTGCAGTCCATACAAGGGAAGATTTGGAAAACTTAGCAGCCGCACTCTCGAATTGCATCAATTTCCAAGATACACGAATTTACGGCTGCAATGGCTATGCAAGATTATAG

Protein sequence

>Msa0348990

MEAPIPIPTAWWEKWVEEALTTLDSLRVLRSLRPICLQREVDDDAFQVFDEMQQWDRSSVEVQIRETTFRKWMHDTPSSGEEIVYGAVSGDDEAGLCHEKFRKLILFSGNDYLGLSSHPTIGKAAAKAAQEHGMGPRGSALICGYTNYHRQLESSLADLKKKEDCLLCPTGFAANMALMTAIGSIGSLLAGNSIPSDDEKIAIFSDALNHASIIDGIRLAERQKGVKPYIYRHCDMSHLNTLLSHCSMKRKIVITDSLFSMDGDFAPMVELAELRKKHGFLLVIDDAHGTFVCGKNGGGVAEEFNCEKDVDICIGTLSKAAGCHGGFIACSTSWKLLIQSRGRSFIFSTATPVPVAAAAHAAVRVAKHETWRRKAIWNRVKDFHLLTGIPVTSPIISLIVGTEDKALQASRHLLQAGFHVTAIRPPTVPPNSCRLRVALSAVHTREDLENLAAALSNCINFQDTRIYGCNGYARL*