AlfalfaGEDB | Msa1215820

M. sativa cultivar zhongmu-4 / Msa1215820

KEGG: K02949
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
PFAM: PF16205.8

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1215820	XP_003609505.1	98.750	160	2	0	1	160	1	160	4.49e-112	325

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1215820	sp\|P17093\|RS11_SOYBN	95.000	160	7	1	1	160	1	159	1.37e-98	283

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1215820	B7FMB4	98.750	160	2	0	1	160	1	160	2.15e-112	325

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002750	Msa1215820	0.996333	3.325023e-226	-8.615850e-47
Msa0002790	Msa1215820	0.982656	1.171200e-155	-8.615850e-47
Msa0003780	Msa1215820	0.869277	3.491736e-66	-8.615850e-47
Msa0022970	Msa1215820	0.868552	5.998773e-66	-8.615850e-47
Msa0027260	Msa1215820	0.848977	4.344998e-60	-8.615850e-47
Msa0032780	Msa1215820	0.818710	1.700925e-52	-8.615850e-47
Msa0040690	Msa1215820	0.827348	1.644495e-54	-8.615850e-47
Msa0042280	Msa1215820	0.830336	3.109739e-55	-8.615850e-47
Msa0043660	Msa1215820	0.801010	1.101653e-48	-8.615850e-47
Msa0044890	Msa1215820	0.838342	3.043542e-57	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1215820	MtrunA17_Chr4g0065131	98.750	160	2	0	1	160	1	160	4.13e-116	325
Msa1215820	MtrunA17_Chr8g0372611	98.750	160	2	0	1	160	1	160	1.17e-115	323
Msa1215820	MtrunA17_Chr1g0152301	93.789	161	9	1	1	160	1	161	6.37e-100	284

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1215820	AT3G48930.1	91.250	160	14	0	1	160	1	160	3.55e-97	277
Msa1215820	AT5G23740.1	90.000	160	15	1	1	160	1	159	2.67e-95	273
Msa1215820	AT4G30800.1	90.625	160	14	1	1	160	1	159	1.41e-93	268

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Find 71 sgRNAs with CRISPR-Local

Find 292 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCAAAACAAAATTGAAC+AGG	0.460920	8_1:-77243618	None:intergenic
AAAGGAAAGAGGCCTGGAAA+AGG	0.502986	8_1:+77241918	Msa1215820:CDS
AACCGCTTCTTTAAATCCGT+TGG	0.460564	8_1:+77241945	Msa1215820:CDS
AACCTCACAGTCTTGGAGAG+AGG	0.610094	8_1:-77243477	None:intergenic
AAGCAGGGTGATACATGAGC+AGG	0.574164	8_1:-77243278	None:intergenic
AAGGAGATCATGTTATTATT+GGG	0.351302	8_1:+77243312	Msa1215820:CDS
AATACAAGCGCTTTCTTATC+AGG	0.209242	8_1:-77243818	None:intergenic
AATCGGGTTCATTATTGCTC+CGG	0.493717	8_1:+77241501	Msa1215820:five_prime_UTR
ACATACCATAGAAACACTTT+AGG	0.392416	8_1:-77241784	None:intergenic
ACCCTCTCACTGAAATTTGT+TGG	0.362133	8_1:-77241563	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAAGAACAACCGAAACAAAA+GGG	-	chr8_1:77241686-77241705	None:intergenic	30.0%
ACATACCATAGAAACACTTT+AGG	-	chr8_1:77241787-77241806	None:intergenic	30.0%
CAACAAATCGAAGGAAAAAA+AGG	-	chr8_1:77241838-77241857	None:intergenic	30.0%
TCAAAATCACAACAAATCGA+AGG	-	chr8_1:77241847-77241866	None:intergenic	30.0%
ACAATAAATTCACAATGCAG+AGG	-	chr8_1:77242018-77242037	None:intergenic	30.0%
GAATTTCAACAAAATCACAG+TGG	-	chr8_1:77242273-77242292	None:intergenic	30.0%
GAAGATTAATCTTTGATAGG+TGG	-	chr8_1:77242351-77242370	None:intergenic	30.0%
CAGGAAGATTAATCTTTGAT+AGG	-	chr8_1:77242354-77242373	None:intergenic	30.0%
CATGTGGCTGAATTTATTAT+TGG	+	chr8_1:77242440-77242459	Msa1215820:intron	30.0%
TTCTGTCATGCAATCATTAT+TGG	+	chr8_1:77242608-77242627	Msa1215820:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_1	gene	77241484	77243843	77241484	ID=Msa1215820;Name=Msa1215820
chr8_1	mRNA	77241484	77243843	77241484	ID=Msa1215820-mRNA-1;Parent=Msa1215820;Name=Msa1215820-mRNA-1;_AED=0.07;_eAED=0.07;_QI=163\|1\|1\|1\|0.83\|0.71\|7\|245\|160
chr8_1	exon	77241484	77241658	77241484	ID=Msa1215820-mRNA-1:exon:26619;Parent=Msa1215820-mRNA-1
chr8_1	exon	77241760	77241800	77241760	ID=Msa1215820-mRNA-1:exon:26620;Parent=Msa1215820-mRNA-1
chr8_1	exon	77241902	77242002	77241902	ID=Msa1215820-mRNA-1:exon:26621;Parent=Msa1215820-mRNA-1
chr8_1	exon	77243020	77243164	77243020	ID=Msa1215820-mRNA-1:exon:26622;Parent=Msa1215820-mRNA-1
chr8_1	exon	77243253	77243342	77243253	ID=Msa1215820-mRNA-1:exon:26623;Parent=Msa1215820-mRNA-1
chr8_1	exon	77243476	77243726	77243476	ID=Msa1215820-mRNA-1:exon:26624;Parent=Msa1215820-mRNA-1
chr8_1	exon	77243756	77243843	77243756	ID=Msa1215820-mRNA-1:exon:26625;Parent=Msa1215820-mRNA-1
chr8_1	five_prime_UTR	77241484	77241646	77241484	ID=Msa1215820-mRNA-1:five_prime_utr;Parent=Msa1215820-mRNA-1
chr8_1	CDS	77241647	77241658	77241647	ID=Msa1215820-mRNA-1:cds;Parent=Msa1215820-mRNA-1
chr8_1	CDS	77241760	77241800	77241760	ID=Msa1215820-mRNA-1:cds;Parent=Msa1215820-mRNA-1
chr8_1	CDS	77241902	77242002	77241902	ID=Msa1215820-mRNA-1:cds;Parent=Msa1215820-mRNA-1
chr8_1	CDS	77243020	77243164	77243020	ID=Msa1215820-mRNA-1:cds;Parent=Msa1215820-mRNA-1
chr8_1	CDS	77243253	77243342	77243253	ID=Msa1215820-mRNA-1:cds;Parent=Msa1215820-mRNA-1
chr8_1	CDS	77243476	77243569	77243476	ID=Msa1215820-mRNA-1:cds;Parent=Msa1215820-mRNA-1
chr8_1	three_prime_UTR	77243570	77243726	77243570	ID=Msa1215820-mRNA-1:three_prime_utr;Parent=Msa1215820-mRNA-1
chr8_1	three_prime_UTR	77243756	77243843	77243756	ID=Msa1215820-mRNA-1:three_prime_utr;Parent=Msa1215820-mRNA-1

Gene Sequence

>Msa1215820

ATGGCTGAACAAACTGAGAAGGCTTTTCTGAAGCAACCTAAAGTGTTTCTATGCTCAAAGAAGAGTGGGAAAGGAAAGAGGCCTGGAAAAGGTGGAAACCGCTTCTTTAAATCCGTTGGTCTTGGATTTAAGACTCCCAGAGAAGCCATTGAAGGAACCTACATTGACAAGAAGTGCCCTTTTACTGGCAATGTTTCCATCCGGGGCCGTATTTTAGCTGGAACTTGTCACAGTGCTAAGATGAATAGGACTATTATTGTTAGGAGGAATTATCTTCACTTTATCAAGAAGTATCAGAGATATGAGAAGAGGCACTCAAACATTCCTGCTCATGTATCACCCTGCTTCCGTGTTAAGGAAGGAGATCATGTTATTATTGGGCAATGCAGGCCTCTCTCCAAGACTGTGAGGTTCAACGTCTTGAAAGTGATCCCAGCTGGTTCATCCAGTGGTGCTGGGAAGAAGGCATTTACTGGAATGTGA

Protein sequence

>Msa1215820

MAEQTEKAFLKQPKVFLCSKKSGKGKRPGKGGNRFFKSVGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRILAGTCHSAKMNRTIIVRRNYLHFIKKYQRYEKRHSNIPAHVSPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSGAGKKAFTGM*