Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0489640 | XP_039688339.1 | 97.573 | 989 | 24 | 0 | 1 | 989 | 1 | 989 | 0.0 | 2005 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0489640 | A0A072V440 | 97.573 | 989 | 24 | 0 | 1 | 989 | 1 | 989 | 0.0 | 2005 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0016040 | Msa0489640 | 0.801120 | 1.045746e-48 | -8.615850e-47 |
| Msa0025160 | Msa0489640 | 0.802401 | 5.708873e-49 | -8.615850e-47 |
| Msa0029380 | Msa0489640 | 0.819323 | 1.233481e-52 | -8.615850e-47 |
| Msa0072520 | Msa0489640 | 0.802511 | 5.419206e-49 | -8.615850e-47 |
| Msa0077560 | Msa0489640 | 0.802297 | 5.997584e-49 | -8.615850e-47 |
| Msa0140280 | Msa0489640 | 0.805481 | 1.307764e-49 | -8.615850e-47 |
| Msa0436910 | Msa0489640 | 0.801469 | 8.874993e-49 | -8.615850e-47 |
| Msa0330520 | Msa0489640 | 0.804090 | 2.552653e-49 | -8.615850e-47 |
| Msa0347530 | Msa0489640 | 0.882758 | 7.964026e-71 | -8.615850e-47 |
| Msa0489640 | Msa0531960 | 0.808548 | 2.934516e-50 | -8.615850e-47 |
| Msa0489640 | Msa0567610 | 0.819172 | 1.335575e-52 | -8.615850e-47 |
| Msa0489640 | Msa0621710 | 0.801034 | 1.089281e-48 | -8.615850e-47 |
| Msa0489640 | Msa0666700 | 0.805445 | 1.330679e-49 | -8.615850e-47 |
| Msa0489640 | Msa0703950 | 0.805269 | 1.448262e-49 | -8.615850e-47 |
| Msa0489640 | Msa0773630 | 0.800411 | 1.459550e-48 | -8.615850e-47 |
| Msa0489640 | Msa0780910 | 0.810246 | 1.268022e-50 | -8.615850e-47 |
| Msa0489640 | Msa0818150 | 0.802974 | 4.349579e-49 | -8.615850e-47 |
| Msa0489640 | Msa1077990 | 0.802341 | 5.873540e-49 | -8.615850e-47 |
| Msa0489640 | Msa1078880 | 0.804377 | 2.224700e-49 | -8.615850e-47 |
| Msa0489640 | Msa1078970 | 0.800360 | 1.494715e-48 | -8.615850e-47 |
| Msa0489640 | Msa1169190 | 0.805049 | 1.610383e-49 | -8.615850e-47 |
| Msa0489640 | Msa1190390 | 0.801036 | 1.087924e-48 | -8.615850e-47 |
| Msa0489640 | Msa1407840 | 0.822219 | 2.663456e-53 | -8.615850e-47 |
| Msa0489640 | Msa1437810 | 0.822105 | 2.830197e-53 | -8.615850e-47 |
| Msa0489640 | Msa1454500 | 0.814194 | 1.744365e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0489640 | MtrunA17_Chr3g0079761 | 97.573 | 989 | 24 | 0 | 1 | 989 | 1 | 989 | 0.0 | 2005 |
| Msa0489640 | MtrunA17_Chr8g0387111 | 36.794 | 867 | 482 | 18 | 161 | 989 | 150 | 988 | 9.35e-179 | 546 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0489640 | AT5G56220.2 | 63.843 | 968 | 319 | 19 | 33 | 989 | 26 | 973 | 0.0 | 1177 |
| Msa0489640 | AT5G56220.1 | 63.843 | 968 | 319 | 19 | 33 | 989 | 26 | 973 | 0.0 | 1177 |
| Msa0489640 | AT4G23440.2 | 34.375 | 960 | 550 | 21 | 73 | 989 | 34 | 956 | 0.0 | 560 |
| Msa0489640 | AT4G23440.1 | 34.375 | 960 | 550 | 21 | 73 | 989 | 34 | 956 | 0.0 | 560 |
Find 182 sgRNAs with CRISPR-Local
Find 217 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTCTTGGAGGAACTGTTTC+AGG | 0.170120 | 3_4:+10245959 | None:intergenic |
| ATGCAATCTCGGATCATTTA+TGG | 0.181943 | 3_4:-10243906 | Msa0489640:CDS |
| TCAATCCAAGCCTCTAAATT+TGG | 0.188009 | 3_4:+10245122 | None:intergenic |
| ATTTGCATTAGTGGAGTTTC+TGG | 0.211500 | 3_4:-10245002 | Msa0489640:CDS |
| TGGAAGAGAGAAAGAGATTA+TGG | 0.238206 | 3_4:-10245324 | Msa0489640:CDS |
| GACATCACAGCTTCCAAGTT+TGG | 0.261069 | 3_4:+10245868 | None:intergenic |
| GCTAACAAATTTGCTGAAAC+TGG | 0.289845 | 3_4:+10244207 | None:intergenic |
| TTTAGCAAATGTTTGTGTTA+TGG | 0.291425 | 3_4:+10243990 | None:intergenic |
| TTGGAGAAAACTAAAGAAAA+AGG | 0.309696 | 3_4:-10244282 | Msa0489640:CDS |
| AATGAATTGTTTCCTATCAT+TGG | 0.319961 | 3_4:+10245095 | None:intergenic |
| CTGAACTTATCACGAAATTT+CGG | 0.319962 | 3_4:-10244873 | Msa0489640:CDS |
| GTCATTTGCTCGGTTGCTTT+CGG | 0.329782 | 3_4:-10245701 | Msa0489640:CDS |
| AGGTATATAAGCTTAGAGAT+AGG | 0.341566 | 3_4:-10245158 | Msa0489640:CDS |
| GGAAATGAGAATGAAATTCT+TGG | 0.342118 | 3_4:+10245944 | None:intergenic |
| AAAATCATTGCATCAGATAA+TGG | 0.343592 | 3_4:+10244576 | None:intergenic |
| AGTAGTGTGATTTGCATTAG+TGG | 0.351595 | 3_4:-10245011 | Msa0489640:CDS |
| TGGAATTGGAAAATCTGAAT+TGG | 0.355506 | 3_4:-10244982 | Msa0489640:CDS |
| GCTGCGCTTCTCGTGAGGTT+TGG | 0.361916 | 3_4:-10244066 | Msa0489640:CDS |
| CATTCTCATTTCCAGTTCCT+AGG | 0.365652 | 3_4:-10245934 | Msa0489640:CDS |
| ATTAGTGGAGTTTCTGGAAT+TGG | 0.377363 | 3_4:-10244996 | Msa0489640:CDS |
| TACAATGATCTTGAACTTGT+TGG | 0.381076 | 3_4:+10245258 | None:intergenic |
| AAACTTGGTAGGTTGAGTTT+TGG | 0.381311 | 3_4:-10244486 | Msa0489640:CDS |
| TGTTACTAGAGATTCCTATC+TGG | 0.384104 | 3_4:+10246329 | None:intergenic |
| AGTTTGGAGTTTGTGGTAGC+AGG | 0.385757 | 3_4:+10245884 | None:intergenic |
| CGAAATTTCGGTTTGGATGT+TGG | 0.386736 | 3_4:-10244861 | Msa0489640:CDS |
| AAGAACCAAATTTAGAGGCT+TGG | 0.392658 | 3_4:-10245127 | Msa0489640:CDS |
| AAGTAATGTTGCCTTCAATA+AGG | 0.392759 | 3_4:+10243588 | None:intergenic |
| ATACAAAACAACTCGATGTT+AGG | 0.394100 | 3_4:+10244121 | None:intergenic |
| TGGTCCTTCTGCACTCTTTG+AGG | 0.395893 | 3_4:-10244424 | Msa0489640:CDS |
| GTGGCTCTTGGAGATATATA+TGG | 0.399208 | 3_4:+10246145 | None:intergenic |
| ACAAAACCATCTTGTACCTT+TGG | 0.400647 | 3_4:+10244934 | None:intergenic |
| TTGTTATCAGAACTTGGAAT+TGG | 0.400764 | 3_4:-10244444 | Msa0489640:CDS |
| AAAGAGATTATGGAGATTGA+AGG | 0.401871 | 3_4:-10245314 | Msa0489640:CDS |
| TGCAATCTCGGATCATTTAT+GGG | 0.402028 | 3_4:-10243905 | Msa0489640:CDS |
| GAACAAAGAACCAAATTTAG+AGG | 0.404321 | 3_4:-10245132 | Msa0489640:CDS |
| AAATCTGAGCTTGAGCTTCA+AGG | 0.405691 | 3_4:-10245791 | Msa0489640:CDS |
| CCAACAAAATATGCATTCCT+TGG | 0.406509 | 3_4:+10245344 | None:intergenic |
| GGTATATAAGCTTAGAGATA+GGG | 0.408584 | 3_4:-10245157 | Msa0489640:CDS |
| TTGTAACTCAAATTCAAGAT+TGG | 0.408723 | 3_4:-10243687 | Msa0489640:CDS |
| GTAGTAACAGTACTAGTAGT+AGG | 0.409477 | 3_4:+10246112 | None:intergenic |
| GAACTACTAGGAACATCTTC+TGG | 0.416102 | 3_4:+10246058 | None:intergenic |
| GGTAATGTATCAAAGAATAT+AGG | 0.420107 | 3_4:+10245593 | None:intergenic |
| CTTATCACGAAATTTCGGTT+TGG | 0.426037 | 3_4:-10244868 | Msa0489640:CDS |
| GCTTCCAAGTTTGGAGTTTG+TGG | 0.428689 | 3_4:+10245877 | None:intergenic |
| TTCATAAGGTGATGATTCTA+TGG | 0.430881 | 3_4:+10246219 | None:intergenic |
| TGAGGTTTGGACTAGCAAAA+AGG | 0.433042 | 3_4:-10244053 | Msa0489640:CDS |
| TAGCTCCACAACCGGAGGTT+CGG | 0.435214 | 3_4:+10243852 | None:intergenic |
| GCTATAAGAATGCTTCTTGT+CGG | 0.442381 | 3_4:-10244249 | Msa0489640:CDS |
| TGGATTGAACAACCAATGAT+AGG | 0.442657 | 3_4:-10245107 | Msa0489640:CDS |
| TTGCTCGGTTGCTTTCGGTT+TGG | 0.442747 | 3_4:-10245696 | Msa0489640:CDS |
| GCAAATGAAACCCTAGGAAC+TGG | 0.443583 | 3_4:+10245923 | None:intergenic |
| TGATAAACTCTTTGCTGCAT+TGG | 0.447557 | 3_4:+10244185 | None:intergenic |
| GGTCTCACGACTCGATTTGT+TGG | 0.449150 | 3_4:-10243666 | Msa0489640:CDS |
| TTCAACTTCTTCAAGTGCAT+TGG | 0.451587 | 3_4:+10243717 | None:intergenic |
| GGTTCATTGTTATCAGAACT+TGG | 0.453724 | 3_4:-10244450 | Msa0489640:CDS |
| AGTAGTAGGGTTTGGAATTG+TGG | 0.454997 | 3_4:+10246126 | None:intergenic |
| AAATATGCATTCCTTGGAAA+AGG | 0.455022 | 3_4:+10245350 | None:intergenic |
| TTCGCAAAGGCTGCAATTCA+AGG | 0.455666 | 3_4:-10243949 | Msa0489640:CDS |
| TCACCTCTTCCATGCTTAAA+CGG | 0.458625 | 3_4:+10245645 | None:intergenic |
| GGGTTTGGAATTGTGGCTCT+TGG | 0.460577 | 3_4:+10246133 | None:intergenic |
| GCAGGATGTTACCTTATTGA+AGG | 0.463282 | 3_4:-10243599 | Msa0489640:CDS |
| CTATCTGGTTGCTACCACCT+TGG | 0.464467 | 3_4:+10246344 | None:intergenic |
| TAGGAAGAATGTTGGTCATA+AGG | 0.467246 | 3_4:-10245408 | Msa0489640:CDS |
| CAAACATTTGCTAAAAGAAC+AGG | 0.467837 | 3_4:-10243982 | Msa0489640:CDS |
| ATTCTCATTTCCAGTTCCTA+GGG | 0.468075 | 3_4:-10245933 | Msa0489640:CDS |
| ACAGTACTAGTAGTAGGGTT+TGG | 0.468117 | 3_4:+10246118 | None:intergenic |
| GTCGCCTTTAGCTCCACAAC+CGG | 0.470867 | 3_4:+10243844 | None:intergenic |
| GGTATCATAGTTCTTTACCT+TGG | 0.472603 | 3_4:+10244617 | None:intergenic |
| TTGCAAAAGCGAATAAGATT+CGG | 0.475368 | 3_4:+10245821 | None:intergenic |
| CAATGTCTCTTGAGCAGCCA+AGG | 0.477439 | 3_4:+10243453 | None:intergenic |
| GTGCTGATTCCGAGATTGAA+AGG | 0.478758 | 3_4:-10244839 | Msa0489640:CDS |
| CTCATGTTATTATTACTACA+AGG | 0.478892 | 3_4:-10244644 | Msa0489640:CDS |
| CAAATCCGAACCTCCGGTTG+TGG | 0.478906 | 3_4:-10243857 | Msa0489640:CDS |
| AATTCGACCCCTTTCAATCT+CGG | 0.480583 | 3_4:+10244830 | None:intergenic |
| AATTCGCAGCTTTGAAGAGC+AGG | 0.480994 | 3_4:-10244811 | Msa0489640:CDS |
| CAAATGTTTGTGTTATGGAA+TGG | 0.482901 | 3_4:+10243995 | None:intergenic |
| TGGATTCAAATCCGAACCTC+CGG | 0.483206 | 3_4:-10243863 | Msa0489640:CDS |
| AAGAATAAGAAGTCAAAGAG+TGG | 0.488074 | 3_4:-10245062 | Msa0489640:CDS |
| CTTCCATGCTTAAACGGTTG+AGG | 0.488878 | 3_4:+10245651 | None:intergenic |
| GCTACCACAAACTCCAAACT+TGG | 0.490521 | 3_4:-10245881 | Msa0489640:CDS |
| GTGAAAATCATCTCAAGAAG+TGG | 0.494213 | 3_4:-10244158 | Msa0489640:CDS |
| GTGGAAAGACGAAGAAGATT+CGG | 0.495716 | 3_4:-10244088 | Msa0489640:CDS |
| GTGTCATCAGAAAACTCATA+AGG | 0.500099 | 3_4:+10246016 | None:intergenic |
| AATGAACAACCATGCAATCT+CGG | 0.501849 | 3_4:-10243917 | Msa0489640:CDS |
| AATCTGCATTGAGTGAAACT+TGG | 0.503323 | 3_4:+10244394 | None:intergenic |
| ACCTCCGGTTGTGGAGCTAA+AGG | 0.506079 | 3_4:-10243848 | Msa0489640:CDS |
| TCAAGAGACATTGGCAAGGT+TGG | 0.506244 | 3_4:-10243443 | Msa0489640:CDS |
| TGGCAATGGAGGAAGGTGAA+TGG | 0.506398 | 3_4:+10244596 | None:intergenic |
| TTATCAATTATCAACAAGTA+AGG | 0.507724 | 3_4:+10244741 | None:intergenic |
| GTTTGGAGTTTGTGGTAGCA+GGG | 0.508931 | 3_4:+10245885 | None:intergenic |
| TGCTGATTCCGAGATTGAAA+GGG | 0.509315 | 3_4:-10244838 | Msa0489640:CDS |
| GAATGCTTCTTGTCGGTGGT+TGG | 0.509859 | 3_4:-10244242 | Msa0489640:CDS |
| AGGACTAATCTACATGATGA+TGG | 0.510441 | 3_4:-10244033 | Msa0489640:CDS |
| AGTATTAGAACTGTGATGCT+TGG | 0.511221 | 3_4:-10243493 | Msa0489640:CDS |
| CAAGGTGGTAGCAACCAGAT+AGG | 0.519978 | 3_4:-10246343 | Msa0489640:CDS |
| AGTGAAACTACGGTTGGAAA+AGG | 0.522401 | 3_4:-10245191 | Msa0489640:CDS |
| TTGGAAAAGGCGGTGGTGGA+AGG | 0.525518 | 3_4:-10245178 | Msa0489640:CDS |
| GAGACAAGAGGTGATTCATA+AGG | 0.530859 | 3_4:+10246205 | None:intergenic |
| TATTACTACAAGGCTTTCCA+AGG | 0.531584 | 3_4:-10244634 | Msa0489640:CDS |
| CAAGATCATTGTAGAGCAAG+TGG | 0.533092 | 3_4:-10245248 | Msa0489640:CDS |
| AAGGATAATCATAATATGCT+AGG | 0.535401 | 3_4:-10245389 | Msa0489640:CDS |
| AGTGGATGAATATGTTTGGC+AGG | 0.537936 | 3_4:-10243617 | Msa0489640:CDS |
| AATGAGAATGAAATTCTTGG+AGG | 0.543849 | 3_4:+10245947 | None:intergenic |
| ACGGTTGGAAAAGGCGGTGG+TGG | 0.544364 | 3_4:-10245182 | Msa0489640:CDS |
| GAAGAAAGTGAAACTACGGT+TGG | 0.545153 | 3_4:-10245197 | Msa0489640:CDS |
| CATTGTAGAGCAAGTGGCAG+CGG | 0.545405 | 3_4:-10245242 | Msa0489640:CDS |
| TGGCAAGGTTGGTGAGAATG+AGG | 0.546759 | 3_4:-10243432 | Msa0489640:CDS |
| GAAAACTCATAAGGATCAGA+AGG | 0.548314 | 3_4:+10246025 | None:intergenic |
| CTTGGCTGCTCAAGAGACAT+TGG | 0.548804 | 3_4:-10243452 | Msa0489640:CDS |
| ACATAACCATGCACAAACCT+TGG | 0.553305 | 3_4:-10243470 | Msa0489640:CDS |
| CAACCGTTTAAGCATGGAAG+AGG | 0.556457 | 3_4:-10245648 | Msa0489640:CDS |
| TAAAGAATGTAAAGAAGCGA+TGG | 0.557061 | 3_4:-10245531 | Msa0489640:CDS |
| AGGATCAGAAGGAGGGGTGT+AGG | 0.557170 | 3_4:+10246036 | None:intergenic |
| TGACTCTATCAGCAATCTCA+TGG | 0.557417 | 3_4:+10245720 | None:intergenic |
| ATTCGGCTGCGCTTCTCGTG+AGG | 0.559569 | 3_4:-10244071 | Msa0489640:CDS |
| CAGATAATGGCAATGGAGGA+AGG | 0.560683 | 3_4:+10244589 | None:intergenic |
| TGCTGATAGAGTCATTTGCT+CGG | 0.561389 | 3_4:-10245711 | Msa0489640:CDS |
| AGGAGTGTCTTCATGAGGAA+AGG | 0.561790 | 3_4:+10244321 | None:intergenic |
| AAGCGTTCAAGAGAATAAAG+AGG | 0.564173 | 3_4:-10244782 | Msa0489640:CDS |
| GGAACATCTTCTGGTGTGGA+AGG | 0.564570 | 3_4:+10246067 | None:intergenic |
| TGAGACTGAAGAGGAATGGT+GGG | 0.564823 | 3_4:-10244715 | Msa0489640:CDS |
| GGAAGCTGTGATGTCTACAT+TGG | 0.564889 | 3_4:-10245860 | Msa0489640:CDS |
| AAATTTGCTGAAACTGGAGC+AGG | 0.566382 | 3_4:+10244213 | None:intergenic |
| ATCTTGAGACTGAAGAGGAA+TGG | 0.566670 | 3_4:-10244719 | Msa0489640:CDS |
| GATGTCTACATTGGATTCCA+TGG | 0.568511 | 3_4:-10245851 | Msa0489640:CDS |
| AGAAGTGACAGAATCTCAGC+AGG | 0.568637 | 3_4:+10245572 | None:intergenic |
| GAATGTAAAGAAGCGATGGA+TGG | 0.569620 | 3_4:-10245527 | Msa0489640:CDS |
| TAGGAAACAATTCATTGAAG+AGG | 0.571931 | 3_4:-10245088 | Msa0489640:CDS |
| TTTCCTCAACCGTTTAAGCA+TGG | 0.573519 | 3_4:-10245654 | Msa0489640:CDS |
| TTGAGACTGAAGAGGAATGG+TGG | 0.573938 | 3_4:-10244716 | Msa0489640:CDS |
| ATCTACATGATGATGGATGT+TGG | 0.579983 | 3_4:-10244026 | Msa0489640:CDS |
| ATCTTGAATTTGAGTTACAA+AGG | 0.582732 | 3_4:+10243690 | None:intergenic |
| TGATAATCTTGAGACTGAAG+AGG | 0.583315 | 3_4:-10244724 | Msa0489640:CDS |
| CTCATAAGGATCAGAAGGAG+GGG | 0.584162 | 3_4:+10246030 | None:intergenic |
| ATAAGAATGCTTCTTGTCGG+TGG | 0.585028 | 3_4:-10244246 | Msa0489640:CDS |
| GGAGGGGTGTAGGAACTACT+AGG | 0.585887 | 3_4:+10246046 | None:intergenic |
| TAGTAACAGTACTAGTAGTA+GGG | 0.586275 | 3_4:+10246113 | None:intergenic |
| ATAAATGATCCGAGATTGCA+TGG | 0.587209 | 3_4:+10243908 | None:intergenic |
| ACTGAAGAGGAATGGTGGGA+AGG | 0.587834 | 3_4:-10244711 | Msa0489640:CDS |
| AGGATTTGTAGTGGTGAAGG+TGG | 0.587983 | 3_4:+10246087 | None:intergenic |
| ATATTACCAAAGGTACAAGA+TGG | 0.588299 | 3_4:-10244940 | Msa0489640:CDS |
| GCATCTCGAAAACGCAGTGA+AGG | 0.590532 | 3_4:+10243771 | None:intergenic |
| GAGCAGCCAAGGTTTGTGCA+TGG | 0.592360 | 3_4:+10243464 | None:intergenic |
| AGATGAAGAAAGTGAAACTA+CGG | 0.592811 | 3_4:-10245201 | Msa0489640:CDS |
| ATTGCATCAGATAATGGCAA+TGG | 0.594014 | 3_4:+10244582 | None:intergenic |
| TTCTTTGCAAATGAAACCCT+AGG | 0.597268 | 3_4:+10245917 | None:intergenic |
| ATAGCCTCAAAGAGTGCAGA+AGG | 0.598750 | 3_4:+10244420 | None:intergenic |
| AATTCTATGAGAAACTTGGT+AGG | 0.599038 | 3_4:-10244497 | Msa0489640:CDS |
| GCATCAGATAATGGCAATGG+AGG | 0.599792 | 3_4:+10244585 | None:intergenic |
| AAAAGAGTATTCAATTGATG+AGG | 0.599982 | 3_4:-10244535 | Msa0489640:CDS |
| GCCTTTAGCTCCACAACCGG+AGG | 0.602709 | 3_4:+10243847 | None:intergenic |
| ACTCATAAGGATCAGAAGGA+GGG | 0.604976 | 3_4:+10246029 | None:intergenic |
| GGAAGGATTTGTAGTGGTGA+AGG | 0.606188 | 3_4:+10246084 | None:intergenic |
| AACTCATAAGGATCAGAAGG+AGG | 0.608649 | 3_4:+10246028 | None:intergenic |
| TTTGATGTATAAAACCATGT+CGG | 0.610935 | 3_4:+10243822 | None:intergenic |
| GCTGAAACAAATGCTGATGA+AGG | 0.612105 | 3_4:+10246178 | None:intergenic |
| AGTGGCAGCGGACAATCTGA+AGG | 0.612931 | 3_4:-10245230 | Msa0489640:CDS |
| AGACTTGGTAGGAAGAATGT+TGG | 0.613159 | 3_4:-10245416 | Msa0489640:CDS |
| AGCGTTCAAGAGAATAAAGA+GGG | 0.613855 | 3_4:-10244781 | Msa0489640:CDS |
| ACTAGGAACATCTTCTGGTG+TGG | 0.614082 | 3_4:+10246063 | None:intergenic |
| ATTCATGGAAAGTGATAGAG+AGG | 0.616199 | 3_4:-10246371 | None:intergenic |
| ATATAAGCTTAGAGATAGGG+AGG | 0.616295 | 3_4:-10245154 | Msa0489640:CDS |
| ACATTTGCTAAAAGAACAGG+TGG | 0.617095 | 3_4:-10243979 | Msa0489640:CDS |
| TTTGGAGTTTGTGGTAGCAG+GGG | 0.619019 | 3_4:+10245886 | None:intergenic |
| AGGACATTTAGACAGTGGTA+AGG | 0.621592 | 3_4:-10243536 | Msa0489640:CDS |
| GCTAAGCTGTTAGCTAGAGG+AGG | 0.624818 | 3_4:-10243556 | Msa0489640:CDS |
| GAAACAAATGCTGATGAAGG+TGG | 0.627253 | 3_4:+10246181 | None:intergenic |
| ACTACGGTTGGAAAAGGCGG+TGG | 0.627416 | 3_4:-10245185 | Msa0489640:CDS |
| GGAGCTAAAGGCGACCGACA+TGG | 0.628008 | 3_4:-10243836 | Msa0489640:CDS |
| AGGTGGTTTGAAATTCGCAA+AGG | 0.633537 | 3_4:-10243962 | Msa0489640:CDS |
| TTGCTCATAGATATTACCAA+AGG | 0.634011 | 3_4:-10244950 | Msa0489640:CDS |
| TGGTGTGGAAGGATTTGTAG+TGG | 0.638361 | 3_4:+10246078 | None:intergenic |
| AGAGCTAAGCTGTTAGCTAG+AGG | 0.639904 | 3_4:-10243559 | Msa0489640:CDS |
| TCAGTATTGCACAAGAACAA+TGG | 0.648299 | 3_4:-10244356 | Msa0489640:CDS |
| AGAGGAGGACATTTAGACAG+TGG | 0.660776 | 3_4:-10243541 | Msa0489640:CDS |
| GCTGATTCCGAGATTGAAAG+GGG | 0.663123 | 3_4:-10244837 | Msa0489640:CDS |
| CTGCTCAAGAGACATTGGCA+AGG | 0.674178 | 3_4:-10243447 | Msa0489640:CDS |
| GAAACTACGGTTGGAAAAGG+CGG | 0.688660 | 3_4:-10245188 | Msa0489640:CDS |
| GTGAAGGCTTGAATCGCGAG+CGG | 0.703011 | 3_4:+10243787 | None:intergenic |
| AGTGATAGAGAGGAATACCA+AGG | 0.707994 | 3_4:-10246361 | Msa0489640:CDS |
| GATAGAGAGGAATACCAAGG+TGG | 0.727016 | 3_4:-10246358 | Msa0489640:CDS |
| GATGAAGGTGGAGAGACAAG+AGG | 0.731625 | 3_4:+10246193 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATCAATTATCAACAAGTA+AGG | + | chr3_4:10245049-10245068 | None:intergenic | 20.0% |
| ! | ACAAGTAGTATCAAAAAACA+AGG | - | chr3_4:10243501-10243520 | Msa0489640:CDS | 25.0% |
| ! | GGTAATGTATCAAAGAATAT+AGG | + | chr3_4:10244197-10244216 | None:intergenic | 25.0% |
| ! | AAGGATAATCATAATATGCT+AGG | - | chr3_4:10244398-10244417 | Msa0489640:CDS | 25.0% |
| ! | AATGAATTGTTTCCTATCAT+TGG | + | chr3_4:10244695-10244714 | None:intergenic | 25.0% |
| ! | CTCATGTTATTATTACTACA+AGG | - | chr3_4:10245143-10245162 | Msa0489640:CDS | 25.0% |
| ! | AAAATCATTGCATCAGATAA+TGG | + | chr3_4:10245214-10245233 | None:intergenic | 25.0% |
| !!! | AAAAGAGTATTCAATTGATG+AGG | - | chr3_4:10245252-10245271 | Msa0489640:CDS | 25.0% |
| !! | GTTTCTCATAGAATTTTTCA+AGG | + | chr3_4:10245285-10245304 | None:intergenic | 25.0% |
| ! | GAAAAATTCTATGAGAAACT+TGG | - | chr3_4:10245286-10245305 | Msa0489640:CDS | 25.0% |
| ! | CCAAAGTTTCTAAACAAAAA+AGG | + | chr3_4:10245489-10245508 | None:intergenic | 25.0% |
| !!! | CCTTTTTTGTTTAGAAACTT+TGG | - | chr3_4:10245486-10245505 | Msa0489640:CDS | 25.0% |
| ! | TTGGAGAAAACTAAAGAAAA+AGG | - | chr3_4:10245505-10245524 | Msa0489640:CDS | 25.0% |
| ! | TTTAGCAAATGTTTGTGTTA+TGG | + | chr3_4:10245800-10245819 | None:intergenic | 25.0% |
| ! | TTTGATGTATAAAACCATGT+CGG | + | chr3_4:10245968-10245987 | None:intergenic | 25.0% |
| !! | ATCTTGAATTTGAGTTACAA+AGG | + | chr3_4:10246100-10246119 | None:intergenic | 25.0% |
| ! | TTGTAACTCAAATTCAAGAT+TGG | - | chr3_4:10246100-10246119 | Msa0489640:CDS | 25.0% |
| ! | AAAAAGTGGATGAATATGTT+TGG | - | chr3_4:10246166-10246185 | Msa0489640:CDS | 25.0% |
| ! | TCTATGGAAGTTTTTGTGTT+TGG | + | chr3_4:10243555-10243574 | None:intergenic | 30.0% |
| TTCATAAGGTGATGATTCTA+TGG | + | chr3_4:10243571-10243590 | None:intergenic | 30.0% | |
| TAGTAACAGTACTAGTAGTA+GGG | + | chr3_4:10243677-10243696 | None:intergenic | 30.0% | |
| AATGAGAATGAAATTCTTGG+AGG | + | chr3_4:10243843-10243862 | None:intergenic | 30.0% | |
| GGAAATGAGAATGAAATTCT+TGG | + | chr3_4:10243846-10243865 | None:intergenic | 30.0% | |
| TTGCAAAAGCGAATAAGATT+CGG | + | chr3_4:10243969-10243988 | None:intergenic | 30.0% | |
| TAAAGAATGTAAAGAAGCGA+TGG | - | chr3_4:10244256-10244275 | Msa0489640:CDS | 30.0% | |
| !! | AGTATTTTAAGAGCAAGACT+TGG | - | chr3_4:10244356-10244375 | Msa0489640:CDS | 30.0% |
| ! | AGAGTTTATTACCTTTTCCA+AGG | - | chr3_4:10244426-10244445 | Msa0489640:CDS | 30.0% |
| AAATATGCATTCCTTGGAAA+AGG | + | chr3_4:10244440-10244459 | None:intergenic | 30.0% | |
| AAAGAGATTATGGAGATTGA+AGG | - | chr3_4:10244473-10244492 | Msa0489640:CDS | 30.0% | |
| !! | GAGATTGAAGGTTTACTTTT+TGG | - | chr3_4:10244485-10244504 | Msa0489640:CDS | 30.0% |
| !!! | AAGGTTTACTTTTTGGAAGT+AGG | - | chr3_4:10244492-10244511 | Msa0489640:CDS | 30.0% |
| !! | TGGAAGTAGGAATTGTTTTA+TGG | - | chr3_4:10244505-10244524 | Msa0489640:CDS | 30.0% |
| TACAATGATCTTGAACTTGT+TGG | + | chr3_4:10244532-10244551 | None:intergenic | 30.0% | |
| AGATGAAGAAAGTGAAACTA+CGG | - | chr3_4:10244586-10244605 | Msa0489640:CDS | 30.0% | |
| AGGTATATAAGCTTAGAGAT+AGG | - | chr3_4:10244629-10244648 | Msa0489640:CDS | 30.0% | |
| GGTATATAAGCTTAGAGATA+GGG | - | chr3_4:10244630-10244649 | Msa0489640:CDS | 30.0% | |
| GAACAAAGAACCAAATTTAG+AGG | - | chr3_4:10244655-10244674 | Msa0489640:CDS | 30.0% | |
| TAGGAAACAATTCATTGAAG+AGG | - | chr3_4:10244699-10244718 | Msa0489640:CDS | 30.0% | |
| AAGAATAAGAAGTCAAAGAG+TGG | - | chr3_4:10244725-10244744 | Msa0489640:CDS | 30.0% | |
| TGGAATTGGAAAATCTGAAT+TGG | - | chr3_4:10244805-10244824 | Msa0489640:CDS | 30.0% | |
| TTGCTCATAGATATTACCAA+AGG | - | chr3_4:10244837-10244856 | Msa0489640:CDS | 30.0% | |
| ! | ATATTACCAAAGGTACAAGA+TGG | - | chr3_4:10244847-10244866 | Msa0489640:CDS | 30.0% |
| CTGAACTTATCACGAAATTT+CGG | - | chr3_4:10244914-10244933 | Msa0489640:CDS | 30.0% | |
| !! | GATGCAATGATTTTGATAAG+AGG | - | chr3_4:10245220-10245239 | Msa0489640:CDS | 30.0% |
| AATTCTATGAGAAACTTGGT+AGG | - | chr3_4:10245290-10245309 | Msa0489640:CDS | 30.0% | |
| !!! | AGTTTTGGTTTGATGATGAT+TGG | - | chr3_4:10245316-10245335 | Msa0489640:CDS | 30.0% |
| TTGTTATCAGAACTTGGAAT+TGG | - | chr3_4:10245343-10245362 | Msa0489640:CDS | 30.0% | |
| ATACAAAACAACTCGATGTT+AGG | + | chr3_4:10245669-10245688 | None:intergenic | 30.0% | |
| CAAATGTTTGTGTTATGGAA+TGG | + | chr3_4:10245795-10245814 | None:intergenic | 30.0% | |
| ! | CAAACATTTGCTAAAAGAAC+AGG | - | chr3_4:10245805-10245824 | Msa0489640:CDS | 30.0% |
| !!! | GAATCAGCTTTTCTTGTTTT+TGG | - | chr3_4:10245904-10245923 | Msa0489640:CDS | 30.0% |
| !! | ACTCGATTTGTTGGAAAAAA+AGG | - | chr3_4:10246130-10246149 | Msa0489640:CDS | 30.0% |
| AAGTAATGTTGCCTTCAATA+AGG | + | chr3_4:10246202-10246221 | None:intergenic | 30.0% | |
| TGTTACTAGAGATTCCTATC+TGG | + | chr3_4:10243461-10243480 | None:intergenic | 35.0% | |
| !! | GAAGTTTTTGTGTTTGGTGA+AGG | + | chr3_4:10243549-10243568 | None:intergenic | 35.0% |
| GTAGTAACAGTACTAGTAGT+AGG | + | chr3_4:10243678-10243697 | None:intergenic | 35.0% | |
| GAAAACTCATAAGGATCAGA+AGG | + | chr3_4:10243765-10243784 | None:intergenic | 35.0% | |
| GTGTCATCAGAAAACTCATA+AGG | + | chr3_4:10243774-10243793 | None:intergenic | 35.0% | |
| ATTCTCATTTCCAGTTCCTA+GGG | - | chr3_4:10243854-10243873 | Msa0489640:CDS | 35.0% | |
| TTCTTTGCAAATGAAACCCT+AGG | + | chr3_4:10243873-10243892 | None:intergenic | 35.0% | |
| ! | TAAGATTCGGATTTTGTCCA+TGG | + | chr3_4:10243956-10243975 | None:intergenic | 35.0% |
| !! | ATCTTATTCGCTTTTGCAAG+TGG | - | chr3_4:10243970-10243989 | Msa0489640:CDS | 35.0% |
| ! | TTTTGTCTAGAGGCTAATGA+TGG | - | chr3_4:10244302-10244321 | Msa0489640:CDS | 35.0% |
| !! | TTTTAAGAGCAAGACTTGGT+AGG | - | chr3_4:10244360-10244379 | Msa0489640:CDS | 35.0% |
| TAGGAAGAATGTTGGTCATA+AGG | - | chr3_4:10244379-10244398 | Msa0489640:CDS | 35.0% | |
| CCAACAAAATATGCATTCCT+TGG | + | chr3_4:10244446-10244465 | None:intergenic | 35.0% | |
| ! | CCAAGGAATGCATATTTTGT+TGG | - | chr3_4:10244443-10244462 | Msa0489640:CDS | 35.0% |
| TGGAAGAGAGAAAGAGATTA+TGG | - | chr3_4:10244463-10244482 | Msa0489640:CDS | 35.0% | |
| ATATAAGCTTAGAGATAGGG+AGG | - | chr3_4:10244633-10244652 | Msa0489640:CDS | 35.0% | |
| AAGAACCAAATTTAGAGGCT+TGG | - | chr3_4:10244660-10244679 | Msa0489640:CDS | 35.0% | |
| TCAATCCAAGCCTCTAAATT+TGG | + | chr3_4:10244668-10244687 | None:intergenic | 35.0% | |
| TGGATTGAACAACCAATGAT+AGG | - | chr3_4:10244680-10244699 | Msa0489640:CDS | 35.0% | |
| ! | AGTAGTGTGATTTGCATTAG+TGG | - | chr3_4:10244776-10244795 | Msa0489640:CDS | 35.0% |
| ATTTGCATTAGTGGAGTTTC+TGG | - | chr3_4:10244785-10244804 | Msa0489640:CDS | 35.0% | |
| !! | ATTAGTGGAGTTTCTGGAAT+TGG | - | chr3_4:10244791-10244810 | Msa0489640:CDS | 35.0% |
| ACAAAACCATCTTGTACCTT+TGG | + | chr3_4:10244856-10244875 | None:intergenic | 35.0% | |
| !! | AAAGGTACAAGATGGTTTTG+TGG | - | chr3_4:10244855-10244874 | Msa0489640:CDS | 35.0% |
| !!! | TACAAGATGGTTTTGTGGAT+TGG | - | chr3_4:10244860-10244879 | Msa0489640:CDS | 35.0% |
| CTTATCACGAAATTTCGGTT+TGG | - | chr3_4:10244919-10244938 | Msa0489640:CDS | 35.0% | |
| AAGCGTTCAAGAGAATAAAG+AGG | - | chr3_4:10245005-10245024 | Msa0489640:CDS | 35.0% | |
| AGCGTTCAAGAGAATAAAGA+GGG | - | chr3_4:10245006-10245025 | Msa0489640:CDS | 35.0% | |
| ! | AGAATAAAGAGGGAGCTTTT+TGG | - | chr3_4:10245016-10245035 | Msa0489640:CDS | 35.0% |
| TGATAATCTTGAGACTGAAG+AGG | - | chr3_4:10245063-10245082 | Msa0489640:CDS | 35.0% | |
| TTGATACCGAAAAACAACAC+AGG | - | chr3_4:10245115-10245134 | Msa0489640:CDS | 35.0% | |
| TATTACTACAAGGCTTTCCA+AGG | - | chr3_4:10245153-10245172 | Msa0489640:CDS | 35.0% | |
| GGTATCATAGTTCTTTACCT+TGG | + | chr3_4:10245173-10245192 | None:intergenic | 35.0% | |
| ! | ATTGCATCAGATAATGGCAA+TGG | + | chr3_4:10245208-10245227 | None:intergenic | 35.0% |
| !! | AAACTTGGTAGGTTGAGTTT+TGG | - | chr3_4:10245301-10245320 | Msa0489640:CDS | 35.0% |
| GGTTCATTGTTATCAGAACT+TGG | - | chr3_4:10245337-10245356 | Msa0489640:CDS | 35.0% | |
| AATCTGCATTGAGTGAAACT+TGG | + | chr3_4:10245396-10245415 | None:intergenic | 35.0% | |
| TCAGTATTGCACAAGAACAA+TGG | - | chr3_4:10245431-10245450 | Msa0489640:CDS | 35.0% | |
| !! | AAAAAAGGAGTGTCTTCATG+AGG | + | chr3_4:10245474-10245493 | None:intergenic | 35.0% |
| GCTATAAGAATGCTTCTTGT+CGG | - | chr3_4:10245538-10245557 | Msa0489640:CDS | 35.0% | |
| !! | GCTAACAAATTTGCTGAAAC+TGG | + | chr3_4:10245583-10245602 | None:intergenic | 35.0% |
| TGATAAACTCTTTGCTGCAT+TGG | + | chr3_4:10245605-10245624 | None:intergenic | 35.0% | |
| GTGAAAATCATCTCAAGAAG+TGG | - | chr3_4:10245629-10245648 | Msa0489640:CDS | 35.0% | |
| AGGACTAATCTACATGATGA+TGG | - | chr3_4:10245754-10245773 | Msa0489640:CDS | 35.0% | |
| !! | ATCTACATGATGATGGATGT+TGG | - | chr3_4:10245761-10245780 | Msa0489640:CDS | 35.0% |
| ! | ACATTTGCTAAAAGAACAGG+TGG | - | chr3_4:10245808-10245827 | Msa0489640:CDS | 35.0% |
| AATGAACAACCATGCAATCT+CGG | - | chr3_4:10245870-10245889 | Msa0489640:CDS | 35.0% | |
| ATAAATGATCCGAGATTGCA+TGG | + | chr3_4:10245882-10245901 | None:intergenic | 35.0% | |
| ATGCAATCTCGGATCATTTA+TGG | - | chr3_4:10245881-10245900 | Msa0489640:CDS | 35.0% | |
| TGCAATCTCGGATCATTTAT+GGG | - | chr3_4:10245882-10245901 | Msa0489640:CDS | 35.0% | |
| TTCAACTTCTTCAAGTGCAT+TGG | + | chr3_4:10246073-10246092 | None:intergenic | 35.0% | |
| AGTATTAGAACTGTGATGCT+TGG | - | chr3_4:10246294-10246313 | Msa0489640:CDS | 35.0% | |
| AGTGATAGAGAGGAATACCA+AGG | - | chr3_4:10243426-10243445 | Msa0489640:CDS | 40.0% | |
| GAGACAAGAGGTGATTCATA+AGG | + | chr3_4:10243585-10243604 | None:intergenic | 40.0% | |
| GAAACAAATGCTGATGAAGG+TGG | + | chr3_4:10243609-10243628 | None:intergenic | 40.0% | |
| GCTGAAACAAATGCTGATGA+AGG | + | chr3_4:10243612-10243631 | None:intergenic | 40.0% | |
| GTGGCTCTTGGAGATATATA+TGG | + | chr3_4:10243645-10243664 | None:intergenic | 40.0% | |
| ! | AGTAGTAGGGTTTGGAATTG+TGG | + | chr3_4:10243664-10243683 | None:intergenic | 40.0% |
| ACAGTACTAGTAGTAGGGTT+TGG | + | chr3_4:10243672-10243691 | None:intergenic | 40.0% | |
| GAACTACTAGGAACATCTTC+TGG | + | chr3_4:10243732-10243751 | None:intergenic | 40.0% | |
| ACTCATAAGGATCAGAAGGA+GGG | + | chr3_4:10243761-10243780 | None:intergenic | 40.0% | |
| AACTCATAAGGATCAGAAGG+AGG | + | chr3_4:10243762-10243781 | None:intergenic | 40.0% | |
| ATTCTTGGAGGAACTGTTTC+AGG | + | chr3_4:10243831-10243850 | None:intergenic | 40.0% | |
| CATTCTCATTTCCAGTTCCT+AGG | - | chr3_4:10243853-10243872 | Msa0489640:CDS | 40.0% | |
| GATGTCTACATTGGATTCCA+TGG | - | chr3_4:10243936-10243955 | Msa0489640:CDS | 40.0% | |
| AAATCTGAGCTTGAGCTTCA+AGG | - | chr3_4:10243996-10244015 | Msa0489640:CDS | 40.0% | |
| TGACTCTATCAGCAATCTCA+TGG | + | chr3_4:10244070-10244089 | None:intergenic | 40.0% | |
| TGCTGATAGAGTCATTTGCT+CGG | - | chr3_4:10244076-10244095 | Msa0489640:CDS | 40.0% | |
| TTTCCTCAACCGTTTAAGCA+TGG | - | chr3_4:10244133-10244152 | Msa0489640:CDS | 40.0% | |
| TCACCTCTTCCATGCTTAAA+CGG | + | chr3_4:10244145-10244164 | None:intergenic | 40.0% | |
| GAATGTAAAGAAGCGATGGA+TGG | - | chr3_4:10244260-10244279 | Msa0489640:CDS | 40.0% | |
| !! | GTGCAATGAGTTTTGTCTAG+AGG | - | chr3_4:10244292-10244311 | Msa0489640:CDS | 40.0% |
| ! | AGACTTGGTAGGAAGAATGT+TGG | - | chr3_4:10244371-10244390 | Msa0489640:CDS | 40.0% |
| CAAGATCATTGTAGAGCAAG+TGG | - | chr3_4:10244539-10244558 | Msa0489640:CDS | 40.0% | |
| GAAGAAAGTGAAACTACGGT+TGG | - | chr3_4:10244590-10244609 | Msa0489640:CDS | 40.0% | |
| AGTGAAACTACGGTTGGAAA+AGG | - | chr3_4:10244596-10244615 | Msa0489640:CDS | 40.0% | |
| !!! | AAGATGGTTTTGTGGATTGG+TGG | - | chr3_4:10244863-10244882 | Msa0489640:CDS | 40.0% |
| !! | CGAAATTTCGGTTTGGATGT+TGG | - | chr3_4:10244926-10244945 | Msa0489640:CDS | 40.0% |
| !! | TGCTGATTCCGAGATTGAAA+GGG | - | chr3_4:10244949-10244968 | Msa0489640:CDS | 40.0% |
| AATTCGACCCCTTTCAATCT+CGG | + | chr3_4:10244960-10244979 | None:intergenic | 40.0% | |
| ATCTTGAGACTGAAGAGGAA+TGG | - | chr3_4:10245068-10245087 | Msa0489640:CDS | 40.0% | |
| ATACCGAAAAACAACACAGG+AGG | - | chr3_4:10245118-10245137 | Msa0489640:CDS | 40.0% | |
| TACCGAAAAACAACACAGGA+GGG | - | chr3_4:10245119-10245138 | Msa0489640:CDS | 40.0% | |
| ATAAGAATGCTTCTTGTCGG+TGG | - | chr3_4:10245541-10245560 | Msa0489640:CDS | 40.0% | |
| !! | AAATTTGCTGAAACTGGAGC+AGG | + | chr3_4:10245577-10245596 | None:intergenic | 40.0% |
| GTGGAAAGACGAAGAAGATT+CGG | - | chr3_4:10245699-10245718 | Msa0489640:CDS | 40.0% | |
| !! | TGAGGTTTGGACTAGCAAAA+AGG | - | chr3_4:10245734-10245753 | Msa0489640:CDS | 40.0% |
| ! | AGGTGGTTTGAAATTCGCAA+AGG | - | chr3_4:10245825-10245844 | Msa0489640:CDS | 40.0% |
| !! | GTGCATTGGTGCAAACTTTT+AGG | + | chr3_4:10246059-10246078 | None:intergenic | 40.0% |
| GTTGCAAAGACGACAAAAAG+TGG | - | chr3_4:10246152-10246171 | Msa0489640:CDS | 40.0% | |
| AGTGGATGAATATGTTTGGC+AGG | - | chr3_4:10246170-10246189 | Msa0489640:CDS | 40.0% | |
| GCAGGATGTTACCTTATTGA+AGG | - | chr3_4:10246188-10246207 | Msa0489640:CDS | 40.0% | |
| AGGACATTTAGACAGTGGTA+AGG | - | chr3_4:10246251-10246270 | Msa0489640:CDS | 40.0% | |
| ACATAACCATGCACAAACCT+TGG | - | chr3_4:10246317-10246336 | Msa0489640:CDS | 40.0% | |
| GATAGAGAGGAATACCAAGG+TGG | - | chr3_4:10243429-10243448 | Msa0489640:CDS | 45.0% | |
| AGGATTTGTAGTGGTGAAGG+TGG | + | chr3_4:10243703-10243722 | None:intergenic | 45.0% | |
| GGAAGGATTTGTAGTGGTGA+AGG | + | chr3_4:10243706-10243725 | None:intergenic | 45.0% | |
| TGGTGTGGAAGGATTTGTAG+TGG | + | chr3_4:10243712-10243731 | None:intergenic | 45.0% | |
| ACTAGGAACATCTTCTGGTG+TGG | + | chr3_4:10243727-10243746 | None:intergenic | 45.0% | |
| CTCATAAGGATCAGAAGGAG+GGG | + | chr3_4:10243760-10243779 | None:intergenic | 45.0% | |
| GCAAATGAAACCCTAGGAAC+TGG | + | chr3_4:10243867-10243886 | None:intergenic | 45.0% | |
| ! | TTTGGAGTTTGTGGTAGCAG+GGG | + | chr3_4:10243904-10243923 | None:intergenic | 45.0% |
| ! | GTTTGGAGTTTGTGGTAGCA+GGG | + | chr3_4:10243905-10243924 | None:intergenic | 45.0% |
| ! | AGTTTGGAGTTTGTGGTAGC+AGG | + | chr3_4:10243906-10243925 | None:intergenic | 45.0% |
| GCTACCACAAACTCCAAACT+TGG | - | chr3_4:10243906-10243925 | Msa0489640:CDS | 45.0% | |
| ! | GCTTCCAAGTTTGGAGTTTG+TGG | + | chr3_4:10243913-10243932 | None:intergenic | 45.0% |
| GACATCACAGCTTCCAAGTT+TGG | + | chr3_4:10243922-10243941 | None:intergenic | 45.0% | |
| GGAAGCTGTGATGTCTACAT+TGG | - | chr3_4:10243927-10243946 | Msa0489640:CDS | 45.0% | |
| ! | GTCATTTGCTCGGTTGCTTT+CGG | - | chr3_4:10244086-10244105 | Msa0489640:CDS | 45.0% |
| CTTCCATGCTTAAACGGTTG+AGG | + | chr3_4:10244139-10244158 | None:intergenic | 45.0% | |
| CAACCGTTTAAGCATGGAAG+AGG | - | chr3_4:10244139-10244158 | Msa0489640:CDS | 45.0% | |
| AGAAGTGACAGAATCTCAGC+AGG | + | chr3_4:10244218-10244237 | None:intergenic | 45.0% | |
| GAAACTACGGTTGGAAAAGG+CGG | - | chr3_4:10244599-10244618 | Msa0489640:CDS | 45.0% | |
| !! | GTGCTGATTCCGAGATTGAA+AGG | - | chr3_4:10244948-10244967 | Msa0489640:CDS | 45.0% |
| ! | GCTGATTCCGAGATTGAAAG+GGG | - | chr3_4:10244950-10244969 | Msa0489640:CDS | 45.0% |
| !! | AATTCGCAGCTTTGAAGAGC+AGG | - | chr3_4:10244976-10244995 | Msa0489640:CDS | 45.0% |
| TTGAGACTGAAGAGGAATGG+TGG | - | chr3_4:10245071-10245090 | Msa0489640:CDS | 45.0% | |
| TGAGACTGAAGAGGAATGGT+GGG | - | chr3_4:10245072-10245091 | Msa0489640:CDS | 45.0% | |
| !!! | GTCCCTCCTGTGTTGTTTTT+CGG | + | chr3_4:10245124-10245143 | None:intergenic | 45.0% |
| ! | CAGATAATGGCAATGGAGGA+AGG | + | chr3_4:10245201-10245220 | None:intergenic | 45.0% |
| ! | GCATCAGATAATGGCAATGG+AGG | + | chr3_4:10245205-10245224 | None:intergenic | 45.0% |
| ! | ATAGCCTCAAAGAGTGCAGA+AGG | + | chr3_4:10245370-10245389 | None:intergenic | 45.0% |
| !! | AGGAGTGTCTTCATGAGGAA+AGG | + | chr3_4:10245469-10245488 | None:intergenic | 45.0% |
| !! | CGAGTTGTTTTGTATCGTCG+CGG | - | chr3_4:10245674-10245693 | Msa0489640:CDS | 45.0% |
| TTCGCAAAGGCTGCAATTCA+AGG | - | chr3_4:10245838-10245857 | Msa0489640:CDS | 45.0% | |
| TGGATTCAAATCCGAACCTC+CGG | - | chr3_4:10245924-10245943 | Msa0489640:CDS | 45.0% | |
| AGAGCTAAGCTGTTAGCTAG+AGG | - | chr3_4:10246228-10246247 | Msa0489640:CDS | 45.0% | |
| AGAGGAGGACATTTAGACAG+TGG | - | chr3_4:10246246-10246265 | Msa0489640:CDS | 45.0% | |
| TCAAGAGACATTGGCAAGGT+TGG | - | chr3_4:10246344-10246363 | Msa0489640:CDS | 45.0% | |
| CTATCTGGTTGCTACCACCT+TGG | + | chr3_4:10243446-10243465 | None:intergenic | 50.0% | |
| CAAGGTGGTAGCAACCAGAT+AGG | - | chr3_4:10243444-10243463 | Msa0489640:CDS | 50.0% | |
| GATGAAGGTGGAGAGACAAG+AGG | + | chr3_4:10243597-10243616 | None:intergenic | 50.0% | |
| ! | GGGTTTGGAATTGTGGCTCT+TGG | + | chr3_4:10243657-10243676 | None:intergenic | 50.0% |
| GGAACATCTTCTGGTGTGGA+AGG | + | chr3_4:10243723-10243742 | None:intergenic | 50.0% | |
| ! | TTGCTCGGTTGCTTTCGGTT+TGG | - | chr3_4:10244091-10244110 | Msa0489640:CDS | 50.0% |
| CATTGTAGAGCAAGTGGCAG+CGG | - | chr3_4:10244545-10244564 | Msa0489640:CDS | 50.0% | |
| ! | ACTGAAGAGGAATGGTGGGA+AGG | - | chr3_4:10245076-10245095 | Msa0489640:CDS | 50.0% |
| TGGCAATGGAGGAAGGTGAA+TGG | + | chr3_4:10245194-10245213 | None:intergenic | 50.0% | |
| TGGTCCTTCTGCACTCTTTG+AGG | - | chr3_4:10245363-10245382 | Msa0489640:CDS | 50.0% | |
| GAATGCTTCTTGTCGGTGGT+TGG | - | chr3_4:10245545-10245564 | Msa0489640:CDS | 50.0% | |
| GCATCTCGAAAACGCAGTGA+AGG | + | chr3_4:10246019-10246038 | None:intergenic | 50.0% | |
| ! | GGTCTCACGACTCGATTTGT+TGG | - | chr3_4:10246121-10246140 | Msa0489640:CDS | 50.0% |
| GCTAAGCTGTTAGCTAGAGG+AGG | - | chr3_4:10246231-10246250 | Msa0489640:CDS | 50.0% | |
| CAATGTCTCTTGAGCAGCCA+AGG | + | chr3_4:10246337-10246356 | None:intergenic | 50.0% | |
| CTTGGCTGCTCAAGAGACAT+TGG | - | chr3_4:10246335-10246354 | Msa0489640:CDS | 50.0% | |
| CTGCTCAAGAGACATTGGCA+AGG | - | chr3_4:10246340-10246359 | Msa0489640:CDS | 50.0% | |
| !! | TGGCAAGGTTGGTGAGAATG+AGG | - | chr3_4:10246355-10246374 | Msa0489640:CDS | 50.0% |
| ! | GGAGGGGTGTAGGAACTACT+AGG | + | chr3_4:10243744-10243763 | None:intergenic | 55.0% |
| ! | AGGATCAGAAGGAGGGGTGT+AGG | + | chr3_4:10243754-10243773 | None:intergenic | 55.0% |
| AGTGGCAGCGGACAATCTGA+AGG | - | chr3_4:10244557-10244576 | Msa0489640:CDS | 55.0% | |
| ACTACGGTTGGAAAAGGCGG+TGG | - | chr3_4:10244602-10244621 | Msa0489640:CDS | 55.0% | |
| !! | TTGGAAAAGGCGGTGGTGGA+AGG | - | chr3_4:10244609-10244628 | Msa0489640:CDS | 55.0% |
| ! | GTTTTGTATCGTCGCGGACG+TGG | - | chr3_4:10245680-10245699 | Msa0489640:CDS | 55.0% |
| CAAATCCGAACCTCCGGTTG+TGG | - | chr3_4:10245930-10245949 | Msa0489640:CDS | 55.0% | |
| TAGCTCCACAACCGGAGGTT+CGG | + | chr3_4:10245938-10245957 | None:intergenic | 55.0% | |
| ACCTCCGGTTGTGGAGCTAA+AGG | - | chr3_4:10245939-10245958 | Msa0489640:CDS | 55.0% | |
| ! | GTCGCCTTTAGCTCCACAAC+CGG | + | chr3_4:10245946-10245965 | None:intergenic | 55.0% |
| GTGAAGGCTTGAATCGCGAG+CGG | + | chr3_4:10246003-10246022 | None:intergenic | 55.0% | |
| GAGCAGCCAAGGTTTGTGCA+TGG | + | chr3_4:10246326-10246345 | None:intergenic | 55.0% | |
| ACGGTTGGAAAAGGCGGTGG+TGG | - | chr3_4:10244605-10244624 | Msa0489640:CDS | 60.0% | |
| ATTCGGCTGCGCTTCTCGTG+AGG | - | chr3_4:10245716-10245735 | Msa0489640:CDS | 60.0% | |
| GCTGCGCTTCTCGTGAGGTT+TGG | - | chr3_4:10245721-10245740 | Msa0489640:CDS | 60.0% | |
| ! | GCCTTTAGCTCCACAACCGG+AGG | + | chr3_4:10245943-10245962 | None:intergenic | 60.0% |
| GGAGCTAAAGGCGACCGACA+TGG | - | chr3_4:10245951-10245970 | Msa0489640:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 10243420 | 10246389 | 10243420 | ID=Msa0489640;Name=Msa0489640 |
| chr3_4 | mRNA | 10243420 | 10246389 | 10243420 | ID=Msa0489640-mRNA-1;Parent=Msa0489640;Name=Msa0489640-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|989 |
| chr3_4 | exon | 10243420 | 10246389 | 10243420 | ID=Msa0489640-mRNA-1:exon:3339;Parent=Msa0489640-mRNA-1 |
| chr3_4 | CDS | 10243420 | 10246389 | 10243420 | ID=Msa0489640-mRNA-1:cds;Parent=Msa0489640-mRNA-1 |
| Gene Sequence |
| Protein sequence |
