AlfalfaGEDB | Msa0818150

M. sativa cultivar zhongmu-4 / Msa0818150

KEGG: K02605
GO: GO:0000228 GO:0000781 GO:0000784 GO:0000808 GO:0003674 GO:0003676 GO:0003677 GO:0003688 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005656 GO:0005664 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006267 GO:0006270 GO:0006725 GO:0006807 GO:0007049 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009743 GO:0009744 GO:0009791 GO:0009987 GO:0010033 GO:0016043 GO:0022402 GO:0022607 GO:0022622 GO:0031261 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0032993 GO:0033260 GO:0034285 GO:0034622 GO:0034641 GO:0034645 GO:0036387 GO:0036388 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044786 GO:0046483 GO:0048364 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0050896 GO:0065003 GO:0065004 GO:0070013 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090696 GO:0097159 GO:0098687 GO:0099402 GO:1901360 GO:1901363 GO:1901576 GO:1901700 GO:1902299 GO:1990837
PFAM: PF07034.14

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0818150	XP_003616635.2	97.238	543	15	0	1	543	1	543	0.0	1092

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0818150	sp\|Q6E7H0\|ORC3_ARATH	43.727	542	281	6	3	536	10	535	2.28e-148	446

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0818150	G7KH11	97.238	543	15	0	1	543	1	543	0.0	1092

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0005020	Msa0818150	0.829510	4.945568e-55	-8.615850e-47
Msa0015570	Msa0818150	0.815593	8.536749e-52	-8.615850e-47
Msa0016040	Msa0818150	0.845251	4.563677e-59	-8.615850e-47
Msa0018920	Msa0818150	0.805287	1.435447e-49	-8.615850e-47
Msa0020540	Msa0818150	0.851995	6.168424e-61	-8.615850e-47
Msa0032980	Msa0818150	0.801373	9.283815e-49	-8.615850e-47
Msa0048510	Msa0818150	0.802180	6.339099e-49	-8.615850e-47
Msa0053070	Msa0818150	0.829280	5.621938e-55	-8.615850e-47
Msa0056180	Msa0818150	0.818419	1.979302e-52	-8.615850e-47
Msa0062340	Msa0818150	0.826836	2.180058e-54	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0818150	MtrunA17_Chr5g0437071	97.238	543	15	0	1	543	1	543	0.0	1092

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0818150	AT5G16690.2	43.727	542	281	6	3	536	10	535	2.23e-149	446
Msa0818150	AT5G16690.1	43.727	542	281	6	3	536	10	535	2.32e-149	446

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Find 104 sgRNAs with CRISPR-Local

Find 478 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACACTCAAGAGCATGTGA+TGG	0.621183	5_3:+53659833	None:intergenic
AAAGAGAGAGATCGCGTCAC+CGG	0.436852	5_3:+53662501	None:intergenic
AAATACCTCTGAAATATCTG+CGG	0.660241	5_3:+53656449	None:intergenic
AACAGAATATCTGTAATCAT+CGG	0.595142	5_3:-53662534	Msa0818150:five_prime_UTR
AACCTTTGAGTCTCATACAA+GGG	0.618661	5_3:-53659482	Msa0818150:CDS
AAGAATGGATGCAATTGTCG+AGG	0.674841	5_3:-53659774	Msa0818150:CDS
AAGATGGAAAGAGTTCACGC+AGG	0.747231	5_3:-53655048	Msa0818150:CDS
AATCATCGGCGGCGAAGAAC+CGG	0.473268	5_3:-53662520	Msa0818150:five_prime_UTR
AATGATTTGGAAAGGTGTTG+TGG	0.576736	5_3:-53660244	Msa0818150:CDS
AATGCGCTGTACAACTTCCC+AGG	0.572467	5_3:+53660786	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACCTAGAAATGAATGGAAT+GGG	+	chr5_3:53655167-53655186	None:intergenic	30.0%
AAACCTAGAAATGAATGGAA+TGG	+	chr5_3:53655168-53655187	None:intergenic	30.0%
GAAGAAAACCTAGAAATGAA+TGG	+	chr5_3:53655173-53655192	None:intergenic	30.0%
ACTCTATTGAAATGTCAAGT+TGG	-	chr5_3:53655310-53655329	Msa0818150:intron	30.0%
TTAACCACTTACCATTAACT+AGG	-	chr5_3:53655342-53655361	Msa0818150:intron	30.0%
AAATATTGGGACCTAGTTAA+TGG	+	chr5_3:53655356-53655375	None:intergenic	30.0%
TAAAAATAAGCCAGTCCAAA+AGG	-	chr5_3:53655809-53655828	Msa0818150:intron	30.0%
AAAAATAAGCCAGTCCAAAA+GGG	-	chr5_3:53655810-53655829	Msa0818150:intron	30.0%
ATTCTTTATCAAGTCAGTGT+TGG	-	chr5_3:53655935-53655954	Msa0818150:intron	30.0%
TACTGATAAACACACTAATG+CGG	+	chr5_3:53656034-53656053	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_3	gene	53655024	53662558	53655024	ID=Msa0818150;Name=Msa0818150
chr5_3	mRNA	53655024	53662558	53655024	ID=Msa0818150-mRNA-1;Parent=Msa0818150;Name=Msa0818150-mRNA-1;_AED=0.13;_eAED=0.13;_QI=63\|1\|0.91\|1\|1\|1\|12\|0\|543
chr5_3	exon	53655024	53655113	53655024	ID=Msa0818150-mRNA-1:exon:16224;Parent=Msa0818150-mRNA-1
chr5_3	exon	53656455	53656524	53656455	ID=Msa0818150-mRNA-1:exon:16223;Parent=Msa0818150-mRNA-1
chr5_3	exon	53657445	53657647	53657445	ID=Msa0818150-mRNA-1:exon:16222;Parent=Msa0818150-mRNA-1
chr5_3	exon	53658649	53658739	53658649	ID=Msa0818150-mRNA-1:exon:16221;Parent=Msa0818150-mRNA-1
chr5_3	exon	53658829	53658896	53658829	ID=Msa0818150-mRNA-1:exon:16220;Parent=Msa0818150-mRNA-1
chr5_3	exon	53659461	53659532	53659461	ID=Msa0818150-mRNA-1:exon:16219;Parent=Msa0818150-mRNA-1
chr5_3	exon	53659658	53659931	53659658	ID=Msa0818150-mRNA-1:exon:16218;Parent=Msa0818150-mRNA-1
chr5_3	exon	53660211	53660341	53660211	ID=Msa0818150-mRNA-1:exon:16217;Parent=Msa0818150-mRNA-1
chr5_3	exon	53660441	53660610	53660441	ID=Msa0818150-mRNA-1:exon:16216;Parent=Msa0818150-mRNA-1
chr5_3	exon	53660775	53660949	53660775	ID=Msa0818150-mRNA-1:exon:16215;Parent=Msa0818150-mRNA-1
chr5_3	exon	53661040	53661258	53661040	ID=Msa0818150-mRNA-1:exon:16214;Parent=Msa0818150-mRNA-1
chr5_3	exon	53662427	53662558	53662427	ID=Msa0818150-mRNA-1:exon:16213;Parent=Msa0818150-mRNA-1
chr5_3	five_prime_UTR	53662496	53662558	53662496	ID=Msa0818150-mRNA-1:five_prime_utr;Parent=Msa0818150-mRNA-1
chr5_3	CDS	53662427	53662495	53662427	ID=Msa0818150-mRNA-1:cds;Parent=Msa0818150-mRNA-1
chr5_3	CDS	53661040	53661258	53661040	ID=Msa0818150-mRNA-1:cds;Parent=Msa0818150-mRNA-1
chr5_3	CDS	53660775	53660949	53660775	ID=Msa0818150-mRNA-1:cds;Parent=Msa0818150-mRNA-1
chr5_3	CDS	53660441	53660610	53660441	ID=Msa0818150-mRNA-1:cds;Parent=Msa0818150-mRNA-1
chr5_3	CDS	53660211	53660341	53660211	ID=Msa0818150-mRNA-1:cds;Parent=Msa0818150-mRNA-1
chr5_3	CDS	53659658	53659931	53659658	ID=Msa0818150-mRNA-1:cds;Parent=Msa0818150-mRNA-1
chr5_3	CDS	53659461	53659532	53659461	ID=Msa0818150-mRNA-1:cds;Parent=Msa0818150-mRNA-1
chr5_3	CDS	53658829	53658896	53658829	ID=Msa0818150-mRNA-1:cds;Parent=Msa0818150-mRNA-1
chr5_3	CDS	53658649	53658739	53658649	ID=Msa0818150-mRNA-1:cds;Parent=Msa0818150-mRNA-1
chr5_3	CDS	53657445	53657647	53657445	ID=Msa0818150-mRNA-1:cds;Parent=Msa0818150-mRNA-1
chr5_3	CDS	53656455	53656524	53656455	ID=Msa0818150-mRNA-1:cds;Parent=Msa0818150-mRNA-1
chr5_3	CDS	53655024	53655113	53655024	ID=Msa0818150-mRNA-1:cds;Parent=Msa0818150-mRNA-1

Gene Sequence

>Msa0818150

ATGGCTCCTTCTTCTCCAAGCAACACCGCTTCGCAACTTCCTTCAACCGCTACAGAAAATGATCTTCAGCCATTCTTTGTGCTACATAAAGCTTCACCTAGGAGGAAAGATAGAACATCAGCAGGACAGGGAAAATCTCGCAAAAGAAATGAGCTATCTCCTCGATTGCCACAGAGTGCAAAGAAACAGGAAGAAAGTACAGATGAAGAATGTGATCGCTATTTGTGTCAGCAACAGCAGATTGAAGCTTTTGATATTATTTGGACAAAAATTGAATCCACTATTAAGGACGTCTTGAGAGAGCTCAATGCTAGTGTATTCAATAATATACAAAAATGGGTTCAGGAGTGCTTCAATACTACTAGATTGGTGGGAGAACCTAGCATTGCTGTAGCAACTCGGTCTTTTCCTGTTCTAACTAATACTATTCCTGGGAAGTTGTACAGCGCATTAGTTGTTACCAGAAACATAGAGTTTGTCGATGACATAATGACATTTGAAGAGCTTGGCATTTTCTTGAAATCCCATGGATGTCATGTGGCTATGCTTTCATCAATGGAGTTTTCGTTGAAAAATGGAATTGCTGGTTGCTTGAAAGCTTTATTGCGAGAGTTTCTAGGGAATTCTTTCGATCCAGCTGATATATCTGCCTTAGCATCATGGTATAGAGAACAAGAAAACTACAATAAACCACTAGTTCTGATCGTTAATGATTTGGAAAGGTGTTGTGGATCAGTCTTAACTGAGTTTATCCTGATGTTGAGTGAATGGGTTATCAAGGTGCCAATATTCTTAATATTTGGAGTTGCAACGACAGTGGATGCCCCAAGAAACATTTTTCCATCACATGCTCTTGAGTGTTTCTGCCCTTCTATGTTTATGCTTGTAACACCAGCTGAAAGAATGGATGCAATTGTCGAGGCTATTCTTGTAAAACATTGCACCACATTTAATATTGGTCATAAAGTGGCACAGTTATTGAGAAATTACTTCATCAATCAGGATGGGACAGTAACATCTTTTATAAGAGCTTTGAAGGTAGCATGCTTATTACACTTCTCTATGGAACCTTTGAGTCTCATACAAGGGAGAATTCTCGTTGAAGATCAGGAGGGAAAATCTGGATTATCACCTGAGACTTTGTTGAAATACATGCATGAACTTCCATCGCATGCAAGGAATGACATGGTTGACCAGACTAACGAGAGCATGGCTGAAGGTTTGTCAGAATTGGTGACAGTGCAGAAACTATGGAGCACTGTGGTTCTTTGCCTATATGAGGCTGGAAAATATAGCAGAGTGCAGCTGCTGGATTTGTTTTGTGAATCCCTCAATCATGTTTTGTACCCATCAAGAGATTCGGTTATGAGTGATGAAAAAGACCATGGGTTATCCTCAACAAACGATCCCTGTCAGCAATATTCTATCATGCACAGTGGCGGTTTTATTTGCCAGATAGTACGCAGAGTGAGGGATCTCCCTCCAGGAAAGCTAGATCAATTGATTGAGAGTTGGGATAAAATTACCGCAGATATTTCAGAGATTCATGAGAAACTGAAAATCTTGCAATCTTCAGTAAGATGTCAAGATGGAAAGAGTTCACGCAGGAGTTCCAAGGACATTAACAAGTAA

Protein sequence

>Msa0818150

MAPSSPSNTASQLPSTATENDLQPFFVLHKASPRRKDRTSAGQGKSRKRNELSPRLPQSAKKQEESTDEECDRYLCQQQQIEAFDIIWTKIESTIKDVLRELNASVFNNIQKWVQECFNTTRLVGEPSIAVATRSFPVLTNTIPGKLYSALVVTRNIEFVDDIMTFEELGIFLKSHGCHVAMLSSMEFSLKNGIAGCLKALLREFLGNSFDPADISALASWYREQENYNKPLVLIVNDLERCCGSVLTEFILMLSEWVIKVPIFLIFGVATTVDAPRNIFPSHALECFCPSMFMLVTPAERMDAIVEAILVKHCTTFNIGHKVAQLLRNYFINQDGTVTSFIRALKVACLLHFSMEPLSLIQGRILVEDQEGKSGLSPETLLKYMHELPSHARNDMVDQTNESMAEGLSELVTVQKLWSTVVLCLYEAGKYSRVQLLDLFCESLNHVLYPSRDSVMSDEKDHGLSSTNDPCQQYSIMHSGGFICQIVRRVRDLPPGKLDQLIESWDKITADISEIHEKLKILQSSVRCQDGKSSRRSSKDINK*