AlfalfaGEDB | Msa0029380

M. sativa cultivar zhongmu-4 / Msa0029380

KEGG: -
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005911 GO:0006091 GO:0006810 GO:0008150 GO:0008152 GO:0009506 GO:0009507 GO:0009536 GO:0009767 GO:0009773 GO:0009987 GO:0010496 GO:0010497 GO:0010598 GO:0015979 GO:0016020 GO:0016032 GO:0019684 GO:0022900 GO:0030054 GO:0032991 GO:0040011 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044000 GO:0044237 GO:0044403 GO:0044419 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0044766 GO:0046739 GO:0046794 GO:0051179 GO:0051234 GO:0051701 GO:0051704 GO:0051814 GO:0052126 GO:0052192 GO:0055044 GO:0055114 GO:0098796 GO:1902579
PFAM: PF01657.20

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0029380	sp\|Q6NM73\|PDLP2_ARATH	67.230	296	89	2	8	297	10	303	1.29e-134	387

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002420	Msa0029380	0.803919	2.770732e-49	-8.615850e-47
Msa0029380	Msa0040790	0.805376	1.375728e-49	-8.615850e-47
Msa0029380	Msa0048510	0.815111	1.093130e-51	-8.615850e-47
Msa0029380	Msa0065020	0.800174	1.631414e-48	-8.615850e-47
Msa0029380	Msa0075480	0.801558	8.506542e-49	-8.615850e-47
Msa0029380	Msa0077340	0.854133	1.507499e-61	-8.615850e-47
Msa0029380	Msa0077560	0.864087	1.564903e-64	-8.615850e-47
Msa0029380	Msa0094780	0.805255	1.458027e-49	-8.615850e-47
Msa0029380	Msa0102240	0.803029	4.236053e-49	-8.615850e-47
Msa0029380	Msa0123070	0.800361	1.494237e-48	-8.615850e-47
Msa0029380	Msa0124910	0.904199	1.575223e-79	-8.615850e-47
Msa0029380	Msa0125360	0.814361	1.602083e-51	-8.615850e-47
Msa0029380	Msa0142430	0.835582	1.543086e-56	-8.615850e-47
Msa0029380	Msa0169410	0.875422	3.119965e-68	-8.615850e-47
Msa0029380	Msa0183710	0.810725	9.990313e-51	-8.615850e-47
Msa0029380	Msa0190730	0.805134	1.545567e-49	-8.615850e-47
Msa0029380	Msa0204950	0.810976	8.816026e-51	-8.615850e-47
Msa0029380	Msa0213030	0.804519	2.078190e-49	-8.615850e-47
Msa0029380	Msa0235290	0.800949	1.133775e-48	-8.615850e-47
Msa0029380	Msa0249850	0.808793	2.601424e-50	-8.615850e-47
Msa0029380	Msa0269210	0.863952	1.723107e-64	-8.615850e-47
Msa0029380	Msa0281470	0.814596	1.421506e-51	-8.615850e-47
Msa0029380	Msa0288620	0.825095	5.650787e-54	-8.615850e-47
Msa0029380	Msa0307270	0.838548	2.693366e-57	-8.615850e-47
Msa0029380	Msa0319920	0.805447	1.329159e-49	-8.615850e-47
Msa0029380	Msa0320600	0.816094	6.599869e-52	-8.615850e-47
Msa0029380	Msa0361910	0.853824	1.850736e-61	-8.615850e-47
Msa0029380	Msa0373500	0.812084	5.064958e-51	-8.615850e-47
Msa0029380	Msa0377710	0.801282	9.690974e-49	-8.615850e-47
Msa0029380	Msa0380490	0.804859	1.764373e-49	-8.615850e-47
Msa0029380	Msa0409830	0.838735	2.409789e-57	-8.615850e-47
Msa0029380	Msa0412790	0.810786	9.691411e-51	-8.615850e-47
Msa0029380	Msa0414880	0.800989	1.112370e-48	-8.615850e-47
Msa0029380	Msa0424160	0.805025	1.628942e-49	-8.615850e-47
Msa0029380	Msa0440350	0.813774	2.159422e-51	-8.615850e-47
Msa0029380	Msa0454560	0.814848	1.249927e-51	-8.615850e-47
Msa0029380	Msa0459740	0.806506	7.960343e-50	-8.615850e-47
Msa0029380	Msa0481890	0.839763	1.304435e-57	-8.615850e-47
Msa0029380	Msa0489640	0.819323	1.233481e-52	-8.615850e-47
Msa0029380	Msa0495300	0.815000	1.156948e-51	-8.615850e-47
Msa0029380	Msa0500650	0.822745	2.009674e-53	-8.615850e-47
Msa0029380	Msa0502510	0.845748	3.347529e-59	-8.615850e-47
Msa0029380	Msa0519760	0.834914	2.274749e-56	-8.615850e-47
Msa0029380	Msa0519810	0.811930	5.470806e-51	-8.615850e-47
Msa0029380	Msa0519840	0.832692	8.174382e-56	-8.615850e-47
Msa0029380	Msa0529030	0.828564	8.382872e-55	-8.615850e-47
Msa0029380	Msa0531960	0.811325	7.409037e-51	-8.615850e-47
Msa0029380	Msa0534720	0.813071	3.080731e-51	-8.615850e-47
Msa0029380	Msa0567610	0.822391	2.429023e-53	-8.615850e-47
Msa0029380	Msa0574900	0.816171	6.344511e-52	-8.615850e-47
Msa0029380	Msa0580370	0.803399	3.551542e-49	-8.615850e-47
Msa0029380	Msa0607800	0.816963	4.217219e-52	-8.615850e-47
Msa0029380	Msa0608700	0.822323	2.518530e-53	-8.615850e-47
Msa0029380	Msa0624900	0.821908	3.143529e-53	-8.615850e-47
Msa0029380	Msa0626460	0.801399	9.169163e-49	-8.615850e-47
Msa0029380	Msa0641990	0.812509	4.090892e-51	-8.615850e-47
Msa0029380	Msa0648040	0.816744	4.723606e-52	-8.615850e-47
Msa0029380	Msa0649200	0.821415	4.087200e-53	-8.615850e-47
Msa0029380	Msa0652770	0.822111	2.821361e-53	-8.615850e-47
Msa0029380	Msa0658640	0.801677	8.043526e-49	-8.615850e-47
Msa0029380	Msa0662820	0.802800	4.724492e-49	-8.615850e-47
Msa0029380	Msa0666700	0.807797	4.241288e-50	-8.615850e-47
Msa0029380	Msa0690740	0.803246	3.819629e-49	-8.615850e-47
Msa0029380	Msa0702810	0.811013	8.657743e-51	-8.615850e-47
Msa0029380	Msa0703950	0.843865	1.076956e-58	-8.615850e-47
Msa0029380	Msa0709200	0.801457	8.921786e-49	-8.615850e-47
Msa0029380	Msa0709440	0.837170	6.088950e-57	-8.615850e-47
Msa0029380	Msa0716890	0.808094	3.666581e-50	-8.615850e-47
Msa0029380	Msa0719270	0.820018	8.560106e-53	-8.615850e-47
Msa0029380	Msa0734250	0.811759	5.961305e-51	-8.615850e-47
Msa0029380	Msa0735780	0.810917	9.080541e-51	-8.615850e-47
Msa0029380	Msa0743440	0.811307	7.474463e-51	-8.615850e-47
Msa0029380	Msa0745140	0.824859	6.424094e-54	-8.615850e-47
Msa0029380	Msa0754430	0.826441	2.708911e-54	-8.615850e-47
Msa0029380	Msa0754450	0.816701	4.828792e-52	-8.615850e-47
Msa0029380	Msa0776640	0.826008	3.433433e-54	-8.615850e-47
Msa0029380	Msa0780910	0.820633	6.186472e-53	-8.615850e-47
Msa0029380	Msa0795750	0.801179	1.017084e-48	-8.615850e-47
Msa0029380	Msa0813160	0.820397	7.010482e-53	-8.615850e-47
Msa0029380	Msa0815970	0.840520	8.276225e-58	-8.615850e-47
Msa0029380	Msa0821160	0.801521	8.658986e-49	-8.615850e-47
Msa0029380	Msa0825920	0.816386	5.678755e-52	-8.615850e-47
Msa0029380	Msa0828970	0.815904	7.277918e-52	-8.615850e-47
Msa0029380	Msa0833650	0.800713	1.266692e-48	-8.615850e-47
Msa0029380	Msa0837460	0.801234	9.911679e-49	-8.615850e-47
Msa0029380	Msa0840520	0.805575	1.249284e-49	-8.615850e-47
Msa0029380	Msa0865420	0.837369	5.414778e-57	-8.615850e-47
Msa0029380	Msa0865450	0.816332	5.841019e-52	-8.615850e-47
Msa0029380	Msa0878280	0.840273	9.601560e-58	-8.615850e-47
Msa0029380	Msa0902360	0.810228	1.279158e-50	-8.615850e-47
Msa0029380	Msa0944010	0.818446	1.952121e-52	-8.615850e-47
Msa0029380	Msa0945190	0.817627	2.989146e-52	-8.615850e-47
Msa0029380	Msa0980290	0.812271	4.610598e-51	-8.615850e-47
Msa0029380	Msa1002350	0.839289	1.731973e-57	-8.615850e-47
Msa0029380	Msa1031410	0.803864	2.844663e-49	-8.615850e-47
Msa0029380	Msa1072940	0.833041	6.697027e-56	-8.615850e-47
Msa0029380	Msa1074900	0.814616	1.407226e-51	-8.615850e-47
Msa0029380	Msa1082410	0.818929	1.516937e-52	-8.615850e-47
Msa0029380	Msa1084530	0.831255	1.851565e-55	-8.615850e-47
Msa0029380	Msa1106590	0.832321	1.010288e-55	-8.615850e-47
Msa0029380	Msa1113360	0.807161	5.785752e-50	-8.615850e-47
Msa0029380	Msa1125820	0.829359	5.379432e-55	-8.615850e-47
Msa0029380	Msa1125990	0.833915	4.052629e-56	-8.615850e-47
Msa0029380	Msa1132840	0.806434	8.242249e-50	-8.615850e-47
Msa0029380	Msa1159590	0.800666	1.294891e-48	-8.615850e-47
Msa0029380	Msa1160920	0.822680	2.080665e-53	-8.615850e-47
Msa0029380	Msa1165090	0.827115	1.869105e-54	-8.615850e-47
Msa0029380	Msa1169660	0.803251	3.811039e-49	-8.615850e-47
Msa0029380	Msa1171290	0.838842	2.260936e-57	-8.615850e-47
Msa0029380	Msa1207330	0.817473	3.238960e-52	-8.615850e-47
Msa0029380	Msa1257440	0.805518	1.284366e-49	-8.615850e-47
Msa0029380	Msa1257570	0.801306	9.581013e-49	-8.615850e-47
Msa0029380	Msa1305250	0.802100	6.585163e-49	-8.615850e-47
Msa0029380	Msa1316140	0.800251	1.573217e-48	-8.615850e-47
Msa0029380	Msa1341840	0.802733	4.877842e-49	-8.615850e-47
Msa0029380	Msa1345670	0.808983	2.369041e-50	-8.615850e-47
Msa0029380	Msa1365820	0.808685	2.743118e-50	-8.615850e-47
Msa0029380	Msa1366150	0.851827	6.886162e-61	-8.615850e-47
Msa0029380	Msa1368390	0.805629	1.217344e-49	-8.615850e-47
Msa0029380	Msa1368750	0.800905	1.157089e-48	-8.615850e-47
Msa0029380	Msa1384150	0.828325	9.573891e-55	-8.615850e-47
Msa0029380	Msa1387440	0.833415	5.404420e-56	-8.615850e-47
Msa0029380	Msa1391500	0.839427	1.595255e-57	-8.615850e-47
Msa0029380	Msa1398810	0.848821	4.801530e-60	-8.615850e-47
Msa0029380	Msa1405460	0.833967	3.933341e-56	-8.615850e-47
Msa0029380	Msa1407840	0.863685	2.086594e-64	-8.615850e-47
Msa0029380	Msa1412000	0.820830	5.573608e-53	-8.615850e-47
Msa0029380	Msa1427110	0.829571	4.777860e-55	-8.615850e-47
Msa0029380	Msa1429070	0.834281	3.280991e-56	-8.615850e-47
Msa0029380	Msa1436620	0.803003	4.288510e-49	-8.615850e-47
Msa0029380	Msa1437810	0.867487	1.319790e-65	-8.615850e-47
Msa0029380	Msa1441960	0.804131	2.502798e-49	-8.615850e-47
Msa0029380	Msa1447100	0.807201	5.674300e-50	-8.615850e-47
Msa0029380	Msa1449900	0.804330	2.275340e-49	-8.615850e-47
Msa0029380	Msa1454500	0.855648	5.477537e-62	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0029380	MtrunA17_Chr1g0186151	98.101	316	6	0	1	316	1	316	0.0	631
Msa0029380	MtrunA17_Chr1g0168311	69.536	302	76	3	1	298	1	290	1.21e-145	411
Msa0029380	MtrunA17_Chr7g0262011	48.789	289	131	4	11	298	83	355	1.97e-88	268
Msa0029380	MtrunA17_Chr1g0190321	39.130	299	156	9	12	298	10	294	2.66e-63	202
Msa0029380	MtrunA17_Chr5g0434531	29.553	291	185	5	9	297	4	276	3.84e-34	126
Msa0029380	MtrunA17_Chr3g0110311	30.690	290	171	6	8	293	7	270	4.98e-33	123
Msa0029380	MtrunA17_Chr8g0391511	28.881	277	182	5	26	299	25	289	1.76e-30	116
Msa0029380	MtrunA17_Chr7g0230381	29.137	278	163	8	8	275	14	267	3.12e-30	115
Msa0029380	MtrunA17_Chr7g0234231	22.835	254	158	4	8	241	4	239	1.43e-16	78.2
Msa0029380	MtrunA17_Chr1g0205771	25.769	260	166	8	47	290	54	302	1.30e-15	77.4
Msa0029380	MtrunA17_Chr1g0206291	25.101	247	160	9	9	237	23	262	7.01e-15	75.1
Msa0029380	MtrunA17_Chr6g0475001	24.149	323	188	11	1	281	1	308	1.31e-14	74.3
Msa0029380	MtrunA17_Chr5g0394001	26.168	214	143	4	38	237	35	247	3.74e-14	73.2
Msa0029380	MtrunA17_Chr3g0109411	27.679	224	149	5	21	234	18	238	5.86e-14	72.4
Msa0029380	MtrunA17_Chr6g0474901	23.462	260	159	5	44	270	33	285	9.84e-14	72.0
Msa0029380	MtrunA17_Chr6g0475201	23.108	251	175	6	1	237	1	247	2.78e-13	70.5
Msa0029380	MtrunA17_Chr3g0081001	22.785	237	170	5	8	234	7	240	2.15e-12	67.8
Msa0029380	MtrunA17_Chr5g0428531	25.103	243	160	9	9	236	9	244	2.18e-12	66.6
Msa0029380	MtrunA17_Chr5g0394021	23.045	243	154	6	68	292	68	295	2.86e-12	67.4
Msa0029380	MtrunA17_Chr1g0206351	25.541	231	135	7	32	237	33	251	3.18e-12	67.4
Msa0029380	MtrunA17_Chr6g0475091	26.050	238	143	7	23	237	30	257	3.79e-12	67.0
Msa0029380	MtrunA17_Chr6g0474871	24.916	297	173	11	8	270	9	289	1.47e-11	65.5
Msa0029380	MtrunA17_Chr6g0474971	24.809	262	153	9	44	270	33	285	3.22e-11	63.2
Msa0029380	MtrunA17_Chr6g0474861	25.000	240	161	7	11	236	6	240	3.64e-11	63.9
Msa0029380	MtrunA17_Chr3g0081031	23.792	269	167	9	12	252	22	280	5.29e-11	63.5

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0029380	AT1G04520.1	67.230	296	89	2	8	297	10	303	1.31e-135	387
Msa0029380	AT2G33330.1	65.116	301	100	3	1	297	1	300	1.19e-133	382
Msa0029380	AT5G43980.1	44.330	291	136	5	25	300	20	299	7.17e-78	240
Msa0029380	AT3G04370.1	35.738	305	154	6	24	298	25	317	6.71e-59	192
Msa0029380	AT3G04370.2	35.197	304	156	5	24	298	25	316	9.30e-59	191
Msa0029380	AT5G37660.1	30.996	271	168	6	11	279	15	268	4.51e-34	126
Msa0029380	AT5G37660.2	30.996	271	168	6	11	279	15	268	5.23e-34	126
Msa0029380	AT3G60720.3	29.044	272	165	6	33	296	29	280	2.52e-31	119
Msa0029380	AT3G60720.1	28.889	270	164	6	33	294	29	278	2.77e-30	116
Msa0029380	AT2G01660.3	29.966	297	185	9	11	300	7	287	5.05e-29	113
Msa0029380	AT2G01660.1	30.201	298	184	10	11	300	7	288	5.66e-29	112
Msa0029380	AT2G01660.2	31.034	232	142	7	26	250	20	240	7.90e-26	103
Msa0029380	AT1G70690.1	28.571	301	183	8	10	296	9	291	2.34e-24	100
Msa0029380	AT3G60720.2	27.885	208	139	4	33	233	29	232	7.04e-24	98.2
Msa0029380	AT5G48540.1	23.077	221	156	5	34	241	24	243	1.90e-16	78.2
Msa0029380	AT5G40380.1	27.946	297	175	12	9	296	12	278	4.22e-15	76.3
Msa0029380	AT5G40380.3	27.946	297	175	12	9	296	12	278	4.91e-15	75.9
Msa0029380	AT5G40380.2	27.946	297	175	12	9	296	12	278	5.39e-15	75.9
Msa0029380	AT4G05200.2	23.125	320	221	10	12	309	29	345	9.16e-15	75.5
Msa0029380	AT4G05200.1	23.125	320	221	10	12	309	11	327	9.39e-15	75.5
Msa0029380	AT5G41290.1	24.286	280	191	6	8	272	7	280	2.70e-12	66.6

Find 88 sgRNAs with CRISPR-Local

Find 289 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TCTGCAAGAGTTCAGCTTTC+AGG	0.163538	1_1:-54727047	Msa0029380:CDS
CCCCAGATGAATGAATATTT+TGG	0.173830	1_1:-54725640	Msa0029380:three_prime_UTR
GCTCTCTCTTCTTCTGGTTT+TGG	0.207236	1_1:+54727639	None:intergenic
TGCATTGCTCTCTCTTCTTC+TGG	0.207247	1_1:+54727633	None:intergenic
TCTGGTTACTCTTCATCTTT+TGG	0.217123	1_1:-54726633	Msa0029380:CDS
ATCCAAAATATTCATTCATC+TGG	0.267270	1_1:+54725638	None:intergenic
GGAAAAGAATCAAATGGTTT+TGG	0.277426	1_1:+54727549	None:intergenic
GAATGTGGAAGTTCTATTTC+AGG	0.278336	1_1:-54726753	Msa0029380:CDS
AATCTACCTCAAGAAGAATT+TGG	0.279128	1_1:+54725869	None:intergenic
GATTCTTGATATATATCTTT+TGG	0.281699	1_1:-54725846	Msa0029380:three_prime_UTR
GAATCAAAACATGGTTGTTT+TGG	0.289029	1_1:+54727444	None:intergenic
AAGACTGTGGCAATAATATT+AGG	0.324267	1_1:-54726127	Msa0029380:CDS
CCACCCTTTGGAACCCCATT+AGG	0.331693	1_1:+54726687	None:intergenic
AGATACCTGTGATGCTGTTT+TGG	0.333639	1_1:+54727162	None:intergenic
GGTGGTGGATCATCCTCTTC+TGG	0.358061	1_1:-54726651	Msa0029380:CDS
TAGACCAAAGTTGTGTAATC+AGG	0.371990	1_1:+54727314	None:intergenic
AAGATGATGATTTAGAGAAA+TGG	0.375671	1_1:+54727339	None:intergenic
CAAGACTAATTCTTGTAGTT+AGG	0.381469	1_1:-54725755	Msa0029380:three_prime_UTR
GATTGTGAATATGCACCATT+TGG	0.394933	1_1:+54727260	None:intergenic
AGATGATGATTTAGAGAAAT+GGG	0.405156	1_1:+54727340	None:intergenic
AAGGGTGGTCATTCTTCATC+TGG	0.421635	1_1:-54726672	Msa0029380:CDS
TTCTCCTGATTACACAACTT+TGG	0.429549	1_1:-54727318	Msa0029380:CDS
TCCAAAATATTCATTCATCT+GGG	0.437790	1_1:+54725639	None:intergenic
TGGTATCATTACAAGGGAAA+AGG	0.439290	1_1:-54725670	Msa0029380:three_prime_UTR
GAAGAACAAAAGAAGAAAGA+GGG	0.456695	1_1:+54727376	None:intergenic
TTATCAAGCTTTGTATGTGA+TGG	0.456880	1_1:-54726850	Msa0029380:CDS
AGGTTCTTCAAAACAACAAC+TGG	0.461798	1_1:-54727191	Msa0029380:CDS
AATGGTGTTGTGAGTAATCA+TGG	0.467963	1_1:-54726888	Msa0029380:CDS
ACAACAAATGCTGCTGGAAG+AGG	0.468669	1_1:-54726951	Msa0029380:CDS
TACATGCTGTACGAGGTTGC+TGG	0.468867	1_1:-54727020	Msa0029380:CDS
GGGAGATAGAGAAAGAATCT+AGG	0.469905	1_1:-54725795	Msa0029380:three_prime_UTR
TGAAGAACAAAAGAAGAAAG+AGG	0.472138	1_1:+54727375	None:intergenic
GGTCAGTGTGAGGGTGATGT+TGG	0.474760	1_1:-54726828	Msa0029380:CDS
GATGAAGAATGACCACCCTT+TGG	0.474944	1_1:+54726675	None:intergenic
AAGCTGAACTCTTGCAGAGA+TGG	0.484956	1_1:+54727052	None:intergenic
CAGATTCTCTTCAAGACTTG+TGG	0.485266	1_1:-54726975	Msa0029380:CDS
TTGTGTTGAGATTCAGAGGG+GGG	0.495926	1_1:+54727515	None:intergenic
AAGAACAAAAGAAGAAAGAG+GGG	0.495996	1_1:+54727377	None:intergenic
TTCAAAACAACAACTGGTAA+TGG	0.498720	1_1:-54727185	Msa0029380:CDS
CATAGTTTGTCTGAGAGAAC+TGG	0.504524	1_1:+54727083	None:intergenic
GGTTAAGGAAAAGAATCAAA+TGG	0.504695	1_1:+54727543	None:intergenic
TGTGGAACAACAAATGCTGC+TGG	0.508236	1_1:-54726957	Msa0029380:CDS
AGATTTGTGGTAAATAGACT+TGG	0.510548	1_1:-54725816	Msa0029380:three_prime_UTR
TTGTGAGATCTCCTCTGCAT+TGG	0.514398	1_1:+54727138	None:intergenic
GGTCATTCTTCATCTGGTGG+TGG	0.515877	1_1:-54726666	Msa0029380:CDS
AATCTAGGACTGTTGAATGT+GGG	0.519681	1_1:-54725780	Msa0029380:three_prime_UTR
AATGGCCAAAACAGCATCAC+AGG	0.526879	1_1:-54727167	Msa0029380:CDS
CAAAATATTCATTCATCTGG+GGG	0.529568	1_1:+54725641	None:intergenic
GCTATGACAGGACAAAATAC+AGG	0.532912	1_1:-54726151	Msa0029380:intron
ATCTGCATCCCTGAAACTTG+TGG	0.533086	1_1:+54726993	None:intergenic
TTATCCTAATGGGGTTCCAA+AGG	0.535083	1_1:-54726691	Msa0029380:CDS
TATCAAGCTTTGTATGTGAT+GGG	0.536644	1_1:-54726849	Msa0029380:CDS
GATGTTGGTGATTCTGATTG+TGG	0.539277	1_1:-54726813	Msa0029380:CDS
TATCCTAATGGGGTTCCAAA+GGG	0.541401	1_1:-54726690	Msa0029380:CDS
GAAACATTCACAGATCCAAA+TGG	0.542666	1_1:-54727275	Msa0029380:CDS
TTATATGCTTGCTATTTGCA+AGG	0.544026	1_1:-54726078	Msa0029380:CDS
AGATGAAGAGTAACCAGAAG+AGG	0.557396	1_1:+54726638	None:intergenic
TTATTGACTGTAGAAGAAGA+TGG	0.558415	1_1:-54725905	Msa0029380:CDS
GTGTTTGTGTTGAGATTCAG+AGG	0.560962	1_1:+54727511	None:intergenic
GAATCTAGGACTGTTGAATG+TGG	0.563094	1_1:-54725781	Msa0029380:three_prime_UTR
TGTGTTGAGATTCAGAGGGG+GGG	0.566446	1_1:+54727516	None:intergenic
TACACAACTTTGGTCTACAA+AGG	0.569043	1_1:-54727308	Msa0029380:CDS
TGTTTGTGTTGAGATTCAGA+GGG	0.574184	1_1:+54727512	None:intergenic
GATTTGTGGTAAATAGACTT+GGG	0.575361	1_1:-54725815	Msa0029380:three_prime_UTR
CAACAAATGCTGCTGGAAGA+GGG	0.576463	1_1:-54726950	Msa0029380:CDS
TATGTGATGGGTCAGTGTGA+GGG	0.578918	1_1:-54726837	Msa0029380:CDS
TTTGTGTTGAGATTCAGAGG+GGG	0.583580	1_1:+54727514	None:intergenic
CCAAAATATTCATTCATCTG+GGG	0.584922	1_1:+54725640	None:intergenic
GGTGGTCATTCTTCATCTGG+TGG	0.587392	1_1:-54726669	Msa0029380:CDS
GTATGTGATGGGTCAGTGTG+AGG	0.592839	1_1:-54726838	Msa0029380:CDS
CAAAGAGCTCAAGTTGAATG+TGG	0.597170	1_1:-54726768	Msa0029380:CDS
AAGAAGATGGTTTACTGTGG+AGG	0.604602	1_1:-54725892	Msa0029380:CDS
ATCTAGGACTGTTGAATGTG+GGG	0.608364	1_1:-54725779	Msa0029380:three_prime_UTR
GTTTGTGTTGAGATTCAGAG+GGG	0.614329	1_1:+54727513	None:intergenic
ATTAGGAGGTATAGCTGCTG+TGG	0.619016	1_1:-54726110	Msa0029380:CDS
TGGAGGCCAAATTCTTCTTG+AGG	0.623214	1_1:-54725875	Msa0029380:exon
CCTAATGGGGTTCCAAAGGG+TGG	0.628137	1_1:-54726687	Msa0029380:CDS
ACAGGTATCTTCCAATGCAG+AGG	0.638244	1_1:-54727149	Msa0029380:CDS
ACTGTGGCAATAATATTAGG+AGG	0.641949	1_1:-54726124	Msa0029380:CDS
TGATGAAGAAACGTGATGGT+AGG	0.645756	1_1:-54726051	Msa0029380:intron
AGGTTGTTACATGCTGTACG+AGG	0.659964	1_1:-54727027	Msa0029380:CDS
AATTTGATGAAGAAACGTGA+TGG	0.662013	1_1:-54726055	Msa0029380:CDS
ATGGAGAGAGAATCAAAACA+TGG	0.673903	1_1:+54727435	None:intergenic
AGAACAAAAGAAGAAAGAGG+GGG	0.676937	1_1:+54727378	None:intergenic
GTTCTCTCAGACAAACTATG+TGG	0.679766	1_1:-54727080	Msa0029380:CDS
TAGAAGAAGATGGTTTACTG+TGG	0.689143	1_1:-54725895	Msa0029380:CDS
AAAATATTCATTCATCTGGG+GGG	0.697623	1_1:+54725642	None:intergenic
ACAAAATACAGGAAAGACTG+TGG	0.709113	1_1:-54726140	Msa0029380:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	ATTTTTGATTTTTTGAGAAA+TGG	+	chr1_1:54725860-54725879	None:intergenic	15.0%
!!	ATTTCTCAAAAAATCAAAAA+TGG	-	chr1_1:54725859-54725878	Msa0029380:exon	15.0%
!!	TTTCTCAAAAAATCAAAAAT+GGG	-	chr1_1:54725860-54725879	Msa0029380:exon	15.0%
!!!	ATTTTTGATTTTTTGAGAAA+TGG	+	chr1_1:54725860-54725879	None:intergenic	15.0%
!!	ATTTCTCAAAAAATCAAAAA+TGG	-	chr1_1:54725859-54725878	Msa0029380:exon	15.0%
!!	TTTCTCAAAAAATCAAAAAT+GGG	-	chr1_1:54725860-54725879	Msa0029380:exon	15.0%
!!!	AGTTTTAGTTATTATCCTAA+TGG	-	chr1_1:54726571-54726590	Msa0029380:intron	20.0%
!!!	GTTTTAGTTATTATCCTAAT+GGG	-	chr1_1:54726572-54726591	Msa0029380:intron	20.0%
!!!	TTTTAGTTATTATCCTAATG+GGG	-	chr1_1:54726573-54726592	Msa0029380:intron	20.0%
!!!	TATCTATTGATTCTGAATAA+TGG	+	chr1_1:54726683-54726702	None:intergenic	20.0%
!!!	TTTTACTTTTATGTTGAATC+TGG	-	chr1_1:54726743-54726762	Msa0029380:CDS	20.0%
!!!	CAATTTTCTCAAATTATGAT+CGG	+	chr1_1:54726825-54726844	None:intergenic	20.0%
!!	TTATAACACATGAACAATTA+AGG	+	chr1_1:54727012-54727031	None:intergenic	20.0%
!!	GTTTCATACATATTAGTAAA+TGG	+	chr1_1:54727066-54727085	None:intergenic	20.0%
!!!	GATTCTTGATATATATCTTT+TGG	-	chr1_1:54727427-54727446	Msa0029380:five_prime_UTR	20.0%
!!!	GATTTTGTTGTGAAAAAAAA+TGG	-	chr1_1:54727547-54727566	Msa0029380:five_prime_UTR	20.0%
!!!	AGTTTTAGTTATTATCCTAA+TGG	-	chr1_1:54726571-54726590	Msa0029380:intron	20.0%
!!!	GTTTTAGTTATTATCCTAAT+GGG	-	chr1_1:54726572-54726591	Msa0029380:intron	20.0%
!!!	TTTTAGTTATTATCCTAATG+GGG	-	chr1_1:54726573-54726592	Msa0029380:intron	20.0%
!!!	TATCTATTGATTCTGAATAA+TGG	+	chr1_1:54726683-54726702	None:intergenic	20.0%
!!!	TTTTACTTTTATGTTGAATC+TGG	-	chr1_1:54726743-54726762	Msa0029380:CDS	20.0%
!!!	CAATTTTCTCAAATTATGAT+CGG	+	chr1_1:54726825-54726844	None:intergenic	20.0%
!!	TTATAACACATGAACAATTA+AGG	+	chr1_1:54727012-54727031	None:intergenic	20.0%
!!	GTTTCATACATATTAGTAAA+TGG	+	chr1_1:54727066-54727085	None:intergenic	20.0%
!!!	GATTCTTGATATATATCTTT+TGG	-	chr1_1:54727427-54727446	Msa0029380:five_prime_UTR	20.0%
!!!	GATTTTGTTGTGAAAAAAAA+TGG	-	chr1_1:54727547-54727566	Msa0029380:five_prime_UTR	20.0%
!!!	AATCAAATGGTTTTGGTTTT+TGG	+	chr1_1:54725720-54725739	None:intergenic	25.0%
!	AGATGATGATTTAGAGAAAT+GGG	+	chr1_1:54725936-54725955	None:intergenic	25.0%
!	AAGATGATGATTTAGAGAAA+TGG	+	chr1_1:54725937-54725956	None:intergenic	25.0%
!	TCAGAATCAATAGATAAGAT+TGG	-	chr1_1:54726687-54726706	Msa0029380:CDS	25.0%
!!!	ATAAGATTGGTTTCAATTCT+GGG	-	chr1_1:54726700-54726719	Msa0029380:CDS	25.0%
!!!	TTGTACATGGTTTTACTATA+TGG	-	chr1_1:54727252-54727271	Msa0029380:CDS	25.0%
!!!	TGAAAGTGAGAATTGTTTTT+TGG	-	chr1_1:54727583-54727602	Msa0029380:five_prime_UTR	25.0%
!!!	TGTTTTTTGGTATCATTACA+AGG	-	chr1_1:54727596-54727615	Msa0029380:five_prime_UTR	25.0%
!!!	GTTTTTTGGTATCATTACAA+GGG	-	chr1_1:54727597-54727616	Msa0029380:five_prime_UTR	25.0%
!	TCCAAAATATTCATTCATCT+GGG	+	chr1_1:54727637-54727656	None:intergenic	25.0%
!	ATCCAAAATATTCATTCATC+TGG	+	chr1_1:54727638-54727657	None:intergenic	25.0%
!!!	AATCAAATGGTTTTGGTTTT+TGG	+	chr1_1:54725720-54725739	None:intergenic	25.0%
!	AGATGATGATTTAGAGAAAT+GGG	+	chr1_1:54725936-54725955	None:intergenic	25.0%
!	AAGATGATGATTTAGAGAAA+TGG	+	chr1_1:54725937-54725956	None:intergenic	25.0%
!	TCAGAATCAATAGATAAGAT+TGG	-	chr1_1:54726687-54726706	Msa0029380:CDS	25.0%
!!!	ATAAGATTGGTTTCAATTCT+GGG	-	chr1_1:54726700-54726719	Msa0029380:CDS	25.0%
!!!	TTGTACATGGTTTTACTATA+TGG	-	chr1_1:54727252-54727271	Msa0029380:CDS	25.0%
!!!	TGAAAGTGAGAATTGTTTTT+TGG	-	chr1_1:54727583-54727602	Msa0029380:five_prime_UTR	25.0%
!!!	TGTTTTTTGGTATCATTACA+AGG	-	chr1_1:54727596-54727615	Msa0029380:five_prime_UTR	25.0%
!!!	GTTTTTTGGTATCATTACAA+GGG	-	chr1_1:54727597-54727616	Msa0029380:five_prime_UTR	25.0%
!	TCCAAAATATTCATTCATCT+GGG	+	chr1_1:54727637-54727656	None:intergenic	25.0%
!	ATCCAAAATATTCATTCATC+TGG	+	chr1_1:54727638-54727657	None:intergenic	25.0%
!!!	ATGGTTTTGGTTTTTGGTTT+GGG	+	chr1_1:54725714-54725733	None:intergenic	30.0%
!!!	AATGGTTTTGGTTTTTGGTT+TGG	+	chr1_1:54725715-54725734	None:intergenic	30.0%
!	GGAAAAGAATCAAATGGTTT+TGG	+	chr1_1:54725727-54725746	None:intergenic	30.0%
	GGTTAAGGAAAAGAATCAAA+TGG	+	chr1_1:54725733-54725752	None:intergenic	30.0%
!!!	TTTGGTTTTTGGAGGAAAAA+AGG	+	chr1_1:54725814-54725833	None:intergenic	30.0%
!!!	AACATGGTTGTTTTGGTTTT+TGG	+	chr1_1:54725825-54725844	None:intergenic	30.0%
!	GAATCAAAACATGGTTGTTT+TGG	+	chr1_1:54725832-54725851	None:intergenic	30.0%
	AAGAACAAAAGAAGAAAGAG+GGG	+	chr1_1:54725899-54725918	None:intergenic	30.0%
	GAAGAACAAAAGAAGAAAGA+GGG	+	chr1_1:54725900-54725919	None:intergenic	30.0%
	TGAAGAACAAAAGAAGAAAG+AGG	+	chr1_1:54725901-54725920	None:intergenic	30.0%
!!	TTTTGTGGATTGTGAAACTA+AGG	+	chr1_1:54726059-54726078	None:intergenic	30.0%
	TTTCACAATCCACAAAAACA+AGG	-	chr1_1:54726062-54726081	Msa0029380:CDS	30.0%
!!!	TTTGAAGAACCTTGTTTTTG+TGG	+	chr1_1:54726074-54726093	None:intergenic	30.0%
	TTCAAAACAACAACTGGTAA+TGG	-	chr1_1:54726088-54726107	Msa0029380:CDS	30.0%
!	TTATCAAGCTTTGTATGTGA+TGG	-	chr1_1:54726423-54726442	Msa0029380:intron	30.0%
!	TATCAAGCTTTGTATGTGAT+GGG	-	chr1_1:54726424-54726443	Msa0029380:intron	30.0%
!!	GATAAGATTGGTTTCAATTC+TGG	-	chr1_1:54726699-54726718	Msa0029380:CDS	30.0%
!	ATTAATCATTGAGTTGTGTG+TGG	-	chr1_1:54727090-54727109	Msa0029380:CDS	30.0%
	AAGACTGTGGCAATAATATT+AGG	-	chr1_1:54727146-54727165	Msa0029380:CDS	30.0%
!!	TTATATGCTTGCTATTTGCA+AGG	-	chr1_1:54727195-54727214	Msa0029380:CDS	30.0%
	AATTTGATGAAGAAACGTGA+TGG	-	chr1_1:54727218-54727237	Msa0029380:CDS	30.0%
!	TTATTGACTGTAGAAGAAGA+TGG	-	chr1_1:54727368-54727387	Msa0029380:CDS	30.0%
	AATCTACCTCAAGAAGAATT+TGG	+	chr1_1:54727407-54727426	None:intergenic	30.0%
	AGATTTGTGGTAAATAGACT+TGG	-	chr1_1:54727457-54727476	Msa0029380:five_prime_UTR	30.0%
	GATTTGTGGTAAATAGACTT+GGG	-	chr1_1:54727458-54727477	Msa0029380:five_prime_UTR	30.0%
	CAAGACTAATTCTTGTAGTT+AGG	-	chr1_1:54727518-54727537	Msa0029380:five_prime_UTR	30.0%
	AAAATATTCATTCATCTGGG+GGG	+	chr1_1:54727634-54727653	None:intergenic	30.0%
	CAAAATATTCATTCATCTGG+GGG	+	chr1_1:54727635-54727654	None:intergenic	30.0%
	CCAAAATATTCATTCATCTG+GGG	+	chr1_1:54727636-54727655	None:intergenic	30.0%
!!!	ATGGTTTTGGTTTTTGGTTT+GGG	+	chr1_1:54725714-54725733	None:intergenic	30.0%
!!!	AATGGTTTTGGTTTTTGGTT+TGG	+	chr1_1:54725715-54725734	None:intergenic	30.0%
!	GGAAAAGAATCAAATGGTTT+TGG	+	chr1_1:54725727-54725746	None:intergenic	30.0%
	GGTTAAGGAAAAGAATCAAA+TGG	+	chr1_1:54725733-54725752	None:intergenic	30.0%
!!!	TTTGGTTTTTGGAGGAAAAA+AGG	+	chr1_1:54725814-54725833	None:intergenic	30.0%
!!!	AACATGGTTGTTTTGGTTTT+TGG	+	chr1_1:54725825-54725844	None:intergenic	30.0%
!	GAATCAAAACATGGTTGTTT+TGG	+	chr1_1:54725832-54725851	None:intergenic	30.0%
	AAGAACAAAAGAAGAAAGAG+GGG	+	chr1_1:54725899-54725918	None:intergenic	30.0%
	GAAGAACAAAAGAAGAAAGA+GGG	+	chr1_1:54725900-54725919	None:intergenic	30.0%
	TGAAGAACAAAAGAAGAAAG+AGG	+	chr1_1:54725901-54725920	None:intergenic	30.0%
!!	TTTTGTGGATTGTGAAACTA+AGG	+	chr1_1:54726059-54726078	None:intergenic	30.0%
	TTTCACAATCCACAAAAACA+AGG	-	chr1_1:54726062-54726081	Msa0029380:CDS	30.0%
!!!	TTTGAAGAACCTTGTTTTTG+TGG	+	chr1_1:54726074-54726093	None:intergenic	30.0%
	TTCAAAACAACAACTGGTAA+TGG	-	chr1_1:54726088-54726107	Msa0029380:CDS	30.0%
!	TTATCAAGCTTTGTATGTGA+TGG	-	chr1_1:54726423-54726442	Msa0029380:intron	30.0%
!	TATCAAGCTTTGTATGTGAT+GGG	-	chr1_1:54726424-54726443	Msa0029380:intron	30.0%
!!	GATAAGATTGGTTTCAATTC+TGG	-	chr1_1:54726699-54726718	Msa0029380:CDS	30.0%
!	ATTAATCATTGAGTTGTGTG+TGG	-	chr1_1:54727090-54727109	Msa0029380:CDS	30.0%
	AAGACTGTGGCAATAATATT+AGG	-	chr1_1:54727146-54727165	Msa0029380:CDS	30.0%
!!	TTATATGCTTGCTATTTGCA+AGG	-	chr1_1:54727195-54727214	Msa0029380:CDS	30.0%
	AATTTGATGAAGAAACGTGA+TGG	-	chr1_1:54727218-54727237	Msa0029380:CDS	30.0%
!	TTATTGACTGTAGAAGAAGA+TGG	-	chr1_1:54727368-54727387	Msa0029380:CDS	30.0%
	AATCTACCTCAAGAAGAATT+TGG	+	chr1_1:54727407-54727426	None:intergenic	30.0%
	AGATTTGTGGTAAATAGACT+TGG	-	chr1_1:54727457-54727476	Msa0029380:five_prime_UTR	30.0%
	GATTTGTGGTAAATAGACTT+GGG	-	chr1_1:54727458-54727477	Msa0029380:five_prime_UTR	30.0%
	CAAGACTAATTCTTGTAGTT+AGG	-	chr1_1:54727518-54727537	Msa0029380:five_prime_UTR	30.0%
	AAAATATTCATTCATCTGGG+GGG	+	chr1_1:54727634-54727653	None:intergenic	30.0%
	CAAAATATTCATTCATCTGG+GGG	+	chr1_1:54727635-54727654	None:intergenic	30.0%
	CCAAAATATTCATTCATCTG+GGG	+	chr1_1:54727636-54727655	None:intergenic	30.0%
!!!	TCTTCTGGTTTTGGTGTATT+GGG	+	chr1_1:54725628-54725647	None:intergenic	35.0%
!!!	TTCTTCTGGTTTTGGTGTAT+TGG	+	chr1_1:54725629-54725648	None:intergenic	35.0%
!!!	TTTTGGTTTGGGTTGATTGT+TGG	+	chr1_1:54725703-54725722	None:intergenic	35.0%
	TGTTTGTGTTGAGATTCAGA+GGG	+	chr1_1:54725764-54725783	None:intergenic	35.0%
!	TGGAGGAAAAAAGGTTTTCT+AGG	+	chr1_1:54725805-54725824	None:intergenic	35.0%
!!!	ATGGTTGTTTTGGTTTTTGG+AGG	+	chr1_1:54725822-54725841	None:intergenic	35.0%
	ATGGAGAGAGAATCAAAACA+TGG	+	chr1_1:54725841-54725860	None:intergenic	35.0%
	AGAACAAAAGAAGAAAGAGG+GGG	+	chr1_1:54725898-54725917	None:intergenic	35.0%
	TTCTCCTGATTACACAACTT+TGG	-	chr1_1:54725955-54725974	Msa0029380:intron	35.0%
	TAGACCAAAGTTGTGTAATC+AGG	+	chr1_1:54725962-54725981	None:intergenic	35.0%
	TACACAACTTTGGTCTACAA+AGG	-	chr1_1:54725965-54725984	Msa0029380:intron	35.0%
	GAAACATTCACAGATCCAAA+TGG	-	chr1_1:54725998-54726017	Msa0029380:intron	35.0%
	GATTGTGAATATGCACCATT+TGG	+	chr1_1:54726016-54726035	None:intergenic	35.0%
!	CAATCTCTTTCAGCACTTTT+TGG	-	chr1_1:54726031-54726050	Msa0029380:intron	35.0%
	AGGTTCTTCAAAACAACAAC+TGG	-	chr1_1:54726082-54726101	Msa0029380:CDS	35.0%
!!	GCTTTTTCTGTGATGGAAAA+TGG	-	chr1_1:54726367-54726386	Msa0029380:intron	35.0%
!!	AATGGTGTTGTGAGTAATCA+TGG	-	chr1_1:54726385-54726404	Msa0029380:intron	35.0%
	GAATGTGGAAGTTCTATTTC+AGG	-	chr1_1:54726520-54726539	Msa0029380:intron	35.0%
!	TCTGGTTACTCTTCATCTTT+TGG	-	chr1_1:54726640-54726659	Msa0029380:CDS	35.0%
!!	ATCGGTGTCAATGTTATGTT+AGG	+	chr1_1:54726807-54726826	None:intergenic	35.0%
!	ACCTTCAATCTGAAGTGTTA+AGG	-	chr1_1:54726934-54726953	Msa0029380:CDS	35.0%
	ACCTTAACACTTCAGATTGA+AGG	+	chr1_1:54726938-54726957	None:intergenic	35.0%
	GAAGTAGCTCAATTTAGCAA+TGG	-	chr1_1:54726976-54726995	Msa0029380:CDS	35.0%
	ACAAAATACAGGAAAGACTG+TGG	-	chr1_1:54727133-54727152	Msa0029380:CDS	35.0%
	ACTGTGGCAATAATATTAGG+AGG	-	chr1_1:54727149-54727168	Msa0029380:CDS	35.0%
	TAGAAGAAGATGGTTTACTG+TGG	-	chr1_1:54727378-54727397	Msa0029380:CDS	35.0%
!!	TTTTGGCTGAAAGAGATTTG+TGG	-	chr1_1:54727444-54727463	Msa0029380:five_prime_UTR	35.0%
!	AATCTAGGACTGTTGAATGT+GGG	-	chr1_1:54727493-54727512	Msa0029380:five_prime_UTR	35.0%
	TGGTATCATTACAAGGGAAA+AGG	-	chr1_1:54727603-54727622	Msa0029380:five_prime_UTR	35.0%
!	CCCCAGATGAATGAATATTT+TGG	-	chr1_1:54727633-54727652	Msa0029380:five_prime_UTR	35.0%
!!!	TCTTCTGGTTTTGGTGTATT+GGG	+	chr1_1:54725628-54725647	None:intergenic	35.0%
!!!	TTCTTCTGGTTTTGGTGTAT+TGG	+	chr1_1:54725629-54725648	None:intergenic	35.0%
!!!	TTTTGGTTTGGGTTGATTGT+TGG	+	chr1_1:54725703-54725722	None:intergenic	35.0%
	TGTTTGTGTTGAGATTCAGA+GGG	+	chr1_1:54725764-54725783	None:intergenic	35.0%
!	TGGAGGAAAAAAGGTTTTCT+AGG	+	chr1_1:54725805-54725824	None:intergenic	35.0%
!!!	ATGGTTGTTTTGGTTTTTGG+AGG	+	chr1_1:54725822-54725841	None:intergenic	35.0%
	ATGGAGAGAGAATCAAAACA+TGG	+	chr1_1:54725841-54725860	None:intergenic	35.0%
	AGAACAAAAGAAGAAAGAGG+GGG	+	chr1_1:54725898-54725917	None:intergenic	35.0%
	TTCTCCTGATTACACAACTT+TGG	-	chr1_1:54725955-54725974	Msa0029380:intron	35.0%
	TAGACCAAAGTTGTGTAATC+AGG	+	chr1_1:54725962-54725981	None:intergenic	35.0%
	TACACAACTTTGGTCTACAA+AGG	-	chr1_1:54725965-54725984	Msa0029380:intron	35.0%
	GAAACATTCACAGATCCAAA+TGG	-	chr1_1:54725998-54726017	Msa0029380:intron	35.0%
	GATTGTGAATATGCACCATT+TGG	+	chr1_1:54726016-54726035	None:intergenic	35.0%
!	CAATCTCTTTCAGCACTTTT+TGG	-	chr1_1:54726031-54726050	Msa0029380:intron	35.0%
	AGGTTCTTCAAAACAACAAC+TGG	-	chr1_1:54726082-54726101	Msa0029380:CDS	35.0%
!!	GCTTTTTCTGTGATGGAAAA+TGG	-	chr1_1:54726367-54726386	Msa0029380:intron	35.0%
!!	AATGGTGTTGTGAGTAATCA+TGG	-	chr1_1:54726385-54726404	Msa0029380:intron	35.0%
	GAATGTGGAAGTTCTATTTC+AGG	-	chr1_1:54726520-54726539	Msa0029380:intron	35.0%
!	TCTGGTTACTCTTCATCTTT+TGG	-	chr1_1:54726640-54726659	Msa0029380:CDS	35.0%
!!	ATCGGTGTCAATGTTATGTT+AGG	+	chr1_1:54726807-54726826	None:intergenic	35.0%
!	ACCTTCAATCTGAAGTGTTA+AGG	-	chr1_1:54726934-54726953	Msa0029380:CDS	35.0%
	ACCTTAACACTTCAGATTGA+AGG	+	chr1_1:54726938-54726957	None:intergenic	35.0%
	GAAGTAGCTCAATTTAGCAA+TGG	-	chr1_1:54726976-54726995	Msa0029380:CDS	35.0%
	ACAAAATACAGGAAAGACTG+TGG	-	chr1_1:54727133-54727152	Msa0029380:CDS	35.0%
	ACTGTGGCAATAATATTAGG+AGG	-	chr1_1:54727149-54727168	Msa0029380:CDS	35.0%
	TAGAAGAAGATGGTTTACTG+TGG	-	chr1_1:54727378-54727397	Msa0029380:CDS	35.0%
!!	TTTTGGCTGAAAGAGATTTG+TGG	-	chr1_1:54727444-54727463	Msa0029380:five_prime_UTR	35.0%
!	AATCTAGGACTGTTGAATGT+GGG	-	chr1_1:54727493-54727512	Msa0029380:five_prime_UTR	35.0%
	TGGTATCATTACAAGGGAAA+AGG	-	chr1_1:54727603-54727622	Msa0029380:five_prime_UTR	35.0%
!	CCCCAGATGAATGAATATTT+TGG	-	chr1_1:54727633-54727652	Msa0029380:five_prime_UTR	35.0%
	TTTGTGTTGAGATTCAGAGG+GGG	+	chr1_1:54725762-54725781	None:intergenic	40.0%
	GTTTGTGTTGAGATTCAGAG+GGG	+	chr1_1:54725763-54725782	None:intergenic	40.0%
	GTGTTTGTGTTGAGATTCAG+AGG	+	chr1_1:54725765-54725784	None:intergenic	40.0%
!!!	AGAAGAAAGAGGGGGTTTTT+TGG	+	chr1_1:54725890-54725909	None:intergenic	40.0%
!!	AGATACCTGTGATGCTGTTT+TGG	+	chr1_1:54726114-54726133	None:intergenic	40.0%
!	CATAGTTTGTCTGAGAGAAC+TGG	+	chr1_1:54726193-54726212	None:intergenic	40.0%
	GTTCTCTCAGACAAACTATG+TGG	-	chr1_1:54726193-54726212	Msa0029380:intron	40.0%
!!	CTGGTTTTCCACAAGTTTCA+GGG	-	chr1_1:54726272-54726291	Msa0029380:intron	40.0%
	CAGATTCTCTTCAAGACTTG+TGG	-	chr1_1:54726298-54726317	Msa0029380:intron	40.0%
!!!	AGACACTGCTTTTTCTGTGA+TGG	-	chr1_1:54726360-54726379	Msa0029380:intron	40.0%
!!	GATGTTGGTGATTCTGATTG+TGG	-	chr1_1:54726460-54726479	Msa0029380:intron	40.0%
!!	CAAAGAGCTCAAGTTGAATG+TGG	-	chr1_1:54726505-54726524	Msa0029380:intron	40.0%
	TTATCCTAATGGGGTTCCAA+AGG	-	chr1_1:54726582-54726601	Msa0029380:intron	40.0%
	TATCCTAATGGGGTTCCAAA+GGG	-	chr1_1:54726583-54726602	Msa0029380:intron	40.0%
	AGATGAAGAGTAACCAGAAG+AGG	+	chr1_1:54726638-54726657	None:intergenic	40.0%
!	GGTTACTCTTCATCTTTTGG+TGG	-	chr1_1:54726643-54726662	Msa0029380:CDS	40.0%
!	GTCAAGTTGTTGTGTTGTGT+AGG	-	chr1_1:54726871-54726890	Msa0029380:CDS	40.0%
!	CTTCAGATTGAAGGTGTGTT+CGG	+	chr1_1:54726929-54726948	None:intergenic	40.0%
	TGGCTAAATGATGCTATGAC+AGG	-	chr1_1:54727110-54727129	Msa0029380:CDS	40.0%
	GCTATGACAGGACAAAATAC+AGG	-	chr1_1:54727122-54727141	Msa0029380:CDS	40.0%
	TGATGAAGAAACGTGATGGT+AGG	-	chr1_1:54727222-54727241	Msa0029380:CDS	40.0%
	AAGAAGATGGTTTACTGTGG+AGG	-	chr1_1:54727381-54727400	Msa0029380:CDS	40.0%
	GGGAGATAGAGAAAGAATCT+AGG	-	chr1_1:54727478-54727497	Msa0029380:five_prime_UTR	40.0%
!	GAATCTAGGACTGTTGAATG+TGG	-	chr1_1:54727492-54727511	Msa0029380:five_prime_UTR	40.0%
!	ATCTAGGACTGTTGAATGTG+GGG	-	chr1_1:54727494-54727513	Msa0029380:five_prime_UTR	40.0%
	TTTGTGTTGAGATTCAGAGG+GGG	+	chr1_1:54725762-54725781	None:intergenic	40.0%
	GTTTGTGTTGAGATTCAGAG+GGG	+	chr1_1:54725763-54725782	None:intergenic	40.0%
	GTGTTTGTGTTGAGATTCAG+AGG	+	chr1_1:54725765-54725784	None:intergenic	40.0%
!!!	AGAAGAAAGAGGGGGTTTTT+TGG	+	chr1_1:54725890-54725909	None:intergenic	40.0%
!!	AGATACCTGTGATGCTGTTT+TGG	+	chr1_1:54726114-54726133	None:intergenic	40.0%
!	CATAGTTTGTCTGAGAGAAC+TGG	+	chr1_1:54726193-54726212	None:intergenic	40.0%
	GTTCTCTCAGACAAACTATG+TGG	-	chr1_1:54726193-54726212	Msa0029380:intron	40.0%
!!	CTGGTTTTCCACAAGTTTCA+GGG	-	chr1_1:54726272-54726291	Msa0029380:intron	40.0%
	CAGATTCTCTTCAAGACTTG+TGG	-	chr1_1:54726298-54726317	Msa0029380:intron	40.0%
!!!	AGACACTGCTTTTTCTGTGA+TGG	-	chr1_1:54726360-54726379	Msa0029380:intron	40.0%
!!	GATGTTGGTGATTCTGATTG+TGG	-	chr1_1:54726460-54726479	Msa0029380:intron	40.0%
!!	CAAAGAGCTCAAGTTGAATG+TGG	-	chr1_1:54726505-54726524	Msa0029380:intron	40.0%
	TTATCCTAATGGGGTTCCAA+AGG	-	chr1_1:54726582-54726601	Msa0029380:intron	40.0%
	TATCCTAATGGGGTTCCAAA+GGG	-	chr1_1:54726583-54726602	Msa0029380:intron	40.0%
	AGATGAAGAGTAACCAGAAG+AGG	+	chr1_1:54726638-54726657	None:intergenic	40.0%
!	GGTTACTCTTCATCTTTTGG+TGG	-	chr1_1:54726643-54726662	Msa0029380:CDS	40.0%
!	GTCAAGTTGTTGTGTTGTGT+AGG	-	chr1_1:54726871-54726890	Msa0029380:CDS	40.0%
!	CTTCAGATTGAAGGTGTGTT+CGG	+	chr1_1:54726929-54726948	None:intergenic	40.0%
	TGGCTAAATGATGCTATGAC+AGG	-	chr1_1:54727110-54727129	Msa0029380:CDS	40.0%
	GCTATGACAGGACAAAATAC+AGG	-	chr1_1:54727122-54727141	Msa0029380:CDS	40.0%
	TGATGAAGAAACGTGATGGT+AGG	-	chr1_1:54727222-54727241	Msa0029380:CDS	40.0%
	AAGAAGATGGTTTACTGTGG+AGG	-	chr1_1:54727381-54727400	Msa0029380:CDS	40.0%
	GGGAGATAGAGAAAGAATCT+AGG	-	chr1_1:54727478-54727497	Msa0029380:five_prime_UTR	40.0%
!	GAATCTAGGACTGTTGAATG+TGG	-	chr1_1:54727492-54727511	Msa0029380:five_prime_UTR	40.0%
!	ATCTAGGACTGTTGAATGTG+GGG	-	chr1_1:54727494-54727513	Msa0029380:five_prime_UTR	40.0%
!!!	GCTCTCTCTTCTTCTGGTTT+TGG	+	chr1_1:54725637-54725656	None:intergenic	45.0%
	TGCATTGCTCTCTCTTCTTC+TGG	+	chr1_1:54725643-54725662	None:intergenic	45.0%
	TTGTGTTGAGATTCAGAGGG+GGG	+	chr1_1:54725761-54725780	None:intergenic	45.0%
	AATGGCCAAAACAGCATCAC+AGG	-	chr1_1:54726106-54726125	Msa0029380:CDS	45.0%
	ACAGGTATCTTCCAATGCAG+AGG	-	chr1_1:54726124-54726143	Msa0029380:CDS	45.0%
	TTGTGAGATCTCCTCTGCAT+TGG	+	chr1_1:54726138-54726157	None:intergenic	45.0%
	AAGCTGAACTCTTGCAGAGA+TGG	+	chr1_1:54726224-54726243	None:intergenic	45.0%
	TCTGCAAGAGTTCAGCTTTC+AGG	-	chr1_1:54726226-54726245	Msa0029380:intron	45.0%
	AGGTTGTTACATGCTGTACG+AGG	-	chr1_1:54726246-54726265	Msa0029380:intron	45.0%
!!!	GCTGGTTTTCCACAAGTTTC+AGG	-	chr1_1:54726271-54726290	Msa0029380:intron	45.0%
	ATCTGCATCCCTGAAACTTG+TGG	+	chr1_1:54726283-54726302	None:intergenic	45.0%
	TGTGGAACAACAAATGCTGC+TGG	-	chr1_1:54726316-54726335	Msa0029380:intron	45.0%
	ACAACAAATGCTGCTGGAAG+AGG	-	chr1_1:54726322-54726341	Msa0029380:intron	45.0%
	CAACAAATGCTGCTGGAAGA+GGG	-	chr1_1:54726323-54726342	Msa0029380:intron	45.0%
!!	TATGTGATGGGTCAGTGTGA+GGG	-	chr1_1:54726436-54726455	Msa0029380:intron	45.0%
	GATGAAGAATGACCACCCTT+TGG	+	chr1_1:54726601-54726620	None:intergenic	45.0%
	AAGGGTGGTCATTCTTCATC+TGG	-	chr1_1:54726601-54726620	Msa0029380:intron	45.0%
	CAACTTGACAGTGATGCATG+TGG	+	chr1_1:54726860-54726879	None:intergenic	45.0%
!	ATTAGGAGGTATAGCTGCTG+TGG	-	chr1_1:54727163-54727182	Msa0029380:CDS	45.0%
!	TATAGCTGCTGTGGCGTTTT+TGG	-	chr1_1:54727172-54727191	Msa0029380:CDS	45.0%
!	GGTAGGTGTTGTGTTGTACA+TGG	-	chr1_1:54727239-54727258	Msa0029380:CDS	45.0%
	TGGAGGCCAAATTCTTCTTG+AGG	-	chr1_1:54727398-54727417	Msa0029380:CDS	45.0%
!!!	TCTGGTTTTGGTGTATTGGG+AGG	+	chr1_1:54725625-54725644	None:intergenic	45.0%
!!!	GCTCTCTCTTCTTCTGGTTT+TGG	+	chr1_1:54725637-54725656	None:intergenic	45.0%
	TGCATTGCTCTCTCTTCTTC+TGG	+	chr1_1:54725643-54725662	None:intergenic	45.0%
	TTGTGTTGAGATTCAGAGGG+GGG	+	chr1_1:54725761-54725780	None:intergenic	45.0%
	AATGGCCAAAACAGCATCAC+AGG	-	chr1_1:54726106-54726125	Msa0029380:CDS	45.0%
	ACAGGTATCTTCCAATGCAG+AGG	-	chr1_1:54726124-54726143	Msa0029380:CDS	45.0%
	TTGTGAGATCTCCTCTGCAT+TGG	+	chr1_1:54726138-54726157	None:intergenic	45.0%
	AAGCTGAACTCTTGCAGAGA+TGG	+	chr1_1:54726224-54726243	None:intergenic	45.0%
	TCTGCAAGAGTTCAGCTTTC+AGG	-	chr1_1:54726226-54726245	Msa0029380:intron	45.0%
	AGGTTGTTACATGCTGTACG+AGG	-	chr1_1:54726246-54726265	Msa0029380:intron	45.0%
!!!	GCTGGTTTTCCACAAGTTTC+AGG	-	chr1_1:54726271-54726290	Msa0029380:intron	45.0%
	ATCTGCATCCCTGAAACTTG+TGG	+	chr1_1:54726283-54726302	None:intergenic	45.0%
	TGTGGAACAACAAATGCTGC+TGG	-	chr1_1:54726316-54726335	Msa0029380:intron	45.0%
	ACAACAAATGCTGCTGGAAG+AGG	-	chr1_1:54726322-54726341	Msa0029380:intron	45.0%
	CAACAAATGCTGCTGGAAGA+GGG	-	chr1_1:54726323-54726342	Msa0029380:intron	45.0%
!!	TATGTGATGGGTCAGTGTGA+GGG	-	chr1_1:54726436-54726455	Msa0029380:intron	45.0%
	GATGAAGAATGACCACCCTT+TGG	+	chr1_1:54726601-54726620	None:intergenic	45.0%
	AAGGGTGGTCATTCTTCATC+TGG	-	chr1_1:54726601-54726620	Msa0029380:intron	45.0%
	CAACTTGACAGTGATGCATG+TGG	+	chr1_1:54726860-54726879	None:intergenic	45.0%
!	ATTAGGAGGTATAGCTGCTG+TGG	-	chr1_1:54727163-54727182	Msa0029380:CDS	45.0%
!	TATAGCTGCTGTGGCGTTTT+TGG	-	chr1_1:54727172-54727191	Msa0029380:CDS	45.0%
!	GGTAGGTGTTGTGTTGTACA+TGG	-	chr1_1:54727239-54727258	Msa0029380:CDS	45.0%
	TGGAGGCCAAATTCTTCTTG+AGG	-	chr1_1:54727398-54727417	Msa0029380:CDS	45.0%
	TGTGTTGAGATTCAGAGGGG+GGG	+	chr1_1:54725760-54725779	None:intergenic	50.0%
	TACATGCTGTACGAGGTTGC+TGG	-	chr1_1:54726253-54726272	Msa0029380:intron	50.0%
!!	GTATGTGATGGGTCAGTGTG+AGG	-	chr1_1:54726435-54726454	Msa0029380:intron	50.0%
	GGTGGTCATTCTTCATCTGG+TGG	-	chr1_1:54726604-54726623	Msa0029380:intron	50.0%
	GGTCATTCTTCATCTGGTGG+TGG	-	chr1_1:54726607-54726626	Msa0029380:intron	50.0%
	TGTCTGACACCAACGCATGT+CGG	-	chr1_1:54726894-54726913	Msa0029380:CDS	50.0%
	TGCATGTATCCGACATGCGT+TGG	+	chr1_1:54726906-54726925	None:intergenic	50.0%
	TGTGTTGAGATTCAGAGGGG+GGG	+	chr1_1:54725760-54725779	None:intergenic	50.0%
	TACATGCTGTACGAGGTTGC+TGG	-	chr1_1:54726253-54726272	Msa0029380:intron	50.0%
!!	GTATGTGATGGGTCAGTGTG+AGG	-	chr1_1:54726435-54726454	Msa0029380:intron	50.0%
	GGTGGTCATTCTTCATCTGG+TGG	-	chr1_1:54726604-54726623	Msa0029380:intron	50.0%
	GGTCATTCTTCATCTGGTGG+TGG	-	chr1_1:54726607-54726626	Msa0029380:intron	50.0%
	TGTCTGACACCAACGCATGT+CGG	-	chr1_1:54726894-54726913	Msa0029380:CDS	50.0%
	TGCATGTATCCGACATGCGT+TGG	+	chr1_1:54726906-54726925	None:intergenic	50.0%
	GTGTTGAGATTCAGAGGGGG+GGG	+	chr1_1:54725759-54725778	None:intergenic	55.0%
	GGTCAGTGTGAGGGTGATGT+TGG	-	chr1_1:54726445-54726464	Msa0029380:intron	55.0%
!!	CCACCCTTTGGAACCCCATT+AGG	+	chr1_1:54726589-54726608	None:intergenic	55.0%
	CCTAATGGGGTTCCAAAGGG+TGG	-	chr1_1:54726586-54726605	Msa0029380:intron	55.0%
!!	GGTGGTGGATCATCCTCTTC+TGG	-	chr1_1:54726622-54726641	Msa0029380:intron	55.0%
	GTGTTGAGATTCAGAGGGGG+GGG	+	chr1_1:54725759-54725778	None:intergenic	55.0%
	GGTCAGTGTGAGGGTGATGT+TGG	-	chr1_1:54726445-54726464	Msa0029380:intron	55.0%
!!	CCACCCTTTGGAACCCCATT+AGG	+	chr1_1:54726589-54726608	None:intergenic	55.0%
	CCTAATGGGGTTCCAAAGGG+TGG	-	chr1_1:54726586-54726605	Msa0029380:intron	55.0%
!!	GGTGGTGGATCATCCTCTTC+TGG	-	chr1_1:54726622-54726641	Msa0029380:intron	55.0%
	CAGAGGGGGGGGACAGGTTA+AGG	+	chr1_1:54725748-54725767	None:intergenic	65.0%
	GAGATTCAGAGGGGGGGGAC+AGG	+	chr1_1:54725754-54725773	None:intergenic	65.0%
	CAGAGGGGGGGGACAGGTTA+AGG	+	chr1_1:54725748-54725767	None:intergenic	65.0%
	GAGATTCAGAGGGGGGGGAC+AGG	+	chr1_1:54725754-54725773	None:intergenic	65.0%

Chromosome	Type	Strat	End	Strand	Name
chr1_1	gene	54725624	54727671	54725624	ID=Msa0029380;Name=Msa0029380
chr1_1	mRNA	54725624	54727671	54725624	ID=Msa0029380-mRNA-1;Parent=Msa0029380;Name=Msa0029380-mRNA-1;_AED=0.04;_eAED=0.04;_QI=254\|0.5\|0.66\|1\|1\|1\|3\|253\|316
chr1_1	exon	54725624	54725928	54725624	ID=Msa0029380-mRNA-1:exon:16334;Parent=Msa0029380-mRNA-1
chr1_1	exon	54726052	54726163	54726052	ID=Msa0029380-mRNA-1:exon:16333;Parent=Msa0029380-mRNA-1
chr1_1	exon	54726631	54727671	54726631	ID=Msa0029380-mRNA-1:exon:16332;Parent=Msa0029380-mRNA-1
chr1_1	five_prime_UTR	54727418	54727671	54727418	ID=Msa0029380-mRNA-1:five_prime_utr;Parent=Msa0029380-mRNA-1
chr1_1	CDS	54726631	54727417	54726631	ID=Msa0029380-mRNA-1:cds;Parent=Msa0029380-mRNA-1
chr1_1	CDS	54726052	54726163	54726052	ID=Msa0029380-mRNA-1:cds;Parent=Msa0029380-mRNA-1
chr1_1	CDS	54725877	54725928	54725877	ID=Msa0029380-mRNA-1:cds;Parent=Msa0029380-mRNA-1
chr1_1	three_prime_UTR	54725624	54725876	54725624	ID=Msa0029380-mRNA-1:three_prime_utr;Parent=Msa0029380-mRNA-1

Gene Sequence

>Msa0029380

ATGGGTTTTCCAAAAAACCCCCTCTTTCTTCTTTTGTTCTTCATTTTCTTCACAACCCATTTCTCTAAATCATCATCTTCTCCTGATTACACAACTTTGGTCTACAAAGGTTGTTCAAAAGAAACATTCACAGATCCAAATGGTGCATATTCACAATCTCTTTCAGCACTTTTTGGTTCCTTAGTTTCACAATCCACAAAAACAAGGTTCTTCAAAACAACAACTGGTAATGGCCAAAACAGCATCACAGGTATCTTCCAATGCAGAGGAGATCTCACAAACTCAGATTGCTACAGCTGTGTTAGCAAGCTACCAGTTCTCTCAGACAAACTATGTGGCAAAACCATCTCTGCAAGAGTTCAGCTTTCAGGTTGTTACATGCTGTACGAGGTTGCTGGTTTTCCACAAGTTTCAGGGATGCAGATTCTCTTCAAGACTTGTGGAACAACAAATGCTGCTGGAAGAGGGTTTGAAGAGAGAAGAGACACTGCTTTTTCTGTGATGGAAAATGGTGTTGTGAGTAATCATGGTTTTTATGTTACTACTTATCAAGCTTTGTATGTGATGGGTCAGTGTGAGGGTGATGTTGGTGATTCTGATTGTGGTGAGTGTGTTAAATCTGCTGTTCAAAGAGCTCAAGTTGAATGTGGAAGTTCTATTTCAGGACAAATTTATTTGCATAAGTGCTTTATTAGTTTTAGTTATTATCCTAATGGGGTTCCAAAGGGTGGTCATTCTTCATCTGGTGGTGGATCATCCTCTTCTGGTTACTCTTCATCTTTTGGTGGACAAAATACAGGAAAGACTGTGGCAATAATATTAGGAGGTATAGCTGCTGTGGCGTTTTTGGTTATATGCTTGCTATTTGCAAGGAATTTGATGAAGAAACGTGATGGTAGATTATTGACTGTAGAAGAAGATGGTTTACTGTGGAGGCCAAATTCTTCTTGA

Protein sequence

>Msa0029380

MGFPKNPLFLLLFFIFFTTHFSKSSSSPDYTTLVYKGCSKETFTDPNGAYSQSLSALFGSLVSQSTKTRFFKTTTGNGQNSITGIFQCRGDLTNSDCYSCVSKLPVLSDKLCGKTISARVQLSGCYMLYEVAGFPQVSGMQILFKTCGTTNAAGRGFEERRDTAFSVMENGVVSNHGFYVTTYQALYVMGQCEGDVGDSDCGECVKSAVQRAQVECGSSISGQIYLHKCFISFSYYPNGVPKGGHSSSGGGSSSSGYSSSFGGQNTGKTVAIILGGIAAVAFLVICLLFARNLMKKRDGRLLTVEEDGLLWRPNSS*