Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0347530 | XP_039688339.1 | 97.169 | 989 | 28 | 0 | 1 | 989 | 1 | 989 | 0.0 | 1997 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0347530 | A0A072V440 | 97.169 | 989 | 28 | 0 | 1 | 989 | 1 | 989 | 0.0 | 1997 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0016040 | Msa0347530 | 0.817648 | 2.957866e-52 | -8.615850e-47 |
| Msa0020540 | Msa0347530 | 0.811643 | 6.318894e-51 | -8.615850e-47 |
| Msa0025160 | Msa0347530 | 0.805086 | 1.581886e-49 | -8.615850e-47 |
| Msa0032460 | Msa0347530 | 0.801816 | 7.532850e-49 | -8.615850e-47 |
| Msa0035270 | Msa0347530 | 0.808564 | 2.910429e-50 | -8.615850e-47 |
| Msa0035340 | Msa0347530 | 0.807623 | 4.617885e-50 | -8.615850e-47 |
| Msa0035380 | Msa0347530 | 0.822401 | 2.415643e-53 | -8.615850e-47 |
| Msa0042640 | Msa0347530 | 0.823136 | 1.629019e-53 | -8.615850e-47 |
| Msa0050660 | Msa0347530 | 0.803918 | 2.771118e-49 | -8.615850e-47 |
| Msa0050700 | Msa0347530 | 0.806181 | 9.318360e-50 | -8.615850e-47 |
| Msa0067060 | Msa0347530 | 0.813435 | 2.563247e-51 | -8.615850e-47 |
| Msa0072520 | Msa0347530 | 0.817721 | 2.847697e-52 | -8.615850e-47 |
| Msa0077560 | Msa0347530 | 0.806458 | 8.145560e-50 | -8.615850e-47 |
| Msa0121330 | Msa0347530 | 0.819192 | 1.321668e-52 | -8.615850e-47 |
| Msa0140130 | Msa0347530 | 0.823284 | 1.504888e-53 | -8.615850e-47 |
| Msa0140280 | Msa0347530 | 0.817281 | 3.576916e-52 | -8.615850e-47 |
| Msa0141640 | Msa0347530 | 0.817243 | 3.647846e-52 | -8.615850e-47 |
| Msa0159590 | Msa0347530 | 0.806363 | 8.531725e-50 | -8.615850e-47 |
| Msa0178450 | Msa0347530 | 0.814183 | 1.754022e-51 | -8.615850e-47 |
| Msa0213610 | Msa0347530 | 0.802628 | 5.126997e-49 | -8.615850e-47 |
| Msa0284800 | Msa0347530 | 0.807969 | 3.898677e-50 | -8.615850e-47 |
| Msa0330520 | Msa0347530 | 0.816423 | 5.573974e-52 | -8.615850e-47 |
| Msa0347530 | Msa0367690 | 0.824335 | 8.535209e-54 | -8.615850e-47 |
| Msa0347530 | Msa0380670 | 0.814096 | 1.833751e-51 | -8.615850e-47 |
| Msa0347530 | Msa0381730 | 0.810771 | 9.767540e-51 | -8.615850e-47 |
| Msa0347530 | Msa0415450 | 0.823520 | 1.325552e-53 | -8.615850e-47 |
| Msa0347530 | Msa0430480 | 0.813093 | 3.047361e-51 | -8.615850e-47 |
| Msa0347530 | Msa0431200 | 0.811395 | 7.153923e-51 | -8.615850e-47 |
| Msa0347530 | Msa0460070 | 0.824458 | 7.986440e-54 | -8.615850e-47 |
| Msa0347530 | Msa0467690 | 0.801670 | 8.070891e-49 | -8.615850e-47 |
| Msa0347530 | Msa0476280 | 0.802009 | 6.874084e-49 | -8.615850e-47 |
| Msa0347530 | Msa0484570 | 0.802377 | 5.773727e-49 | -8.615850e-47 |
| Msa0347530 | Msa0489640 | 0.882758 | 7.964026e-71 | -8.615850e-47 |
| Msa0347530 | Msa0504720 | 0.800137 | 1.659356e-48 | -8.615850e-47 |
| Msa0347530 | Msa0520260 | 0.815113 | 1.091818e-51 | -8.615850e-47 |
| Msa0347530 | Msa0531960 | 0.814477 | 1.510313e-51 | -8.615850e-47 |
| Msa0347530 | Msa0570010 | 0.834905 | 2.286792e-56 | -8.615850e-47 |
| Msa0347530 | Msa0607800 | 0.816812 | 4.559292e-52 | -8.615850e-47 |
| Msa0347530 | Msa0619710 | 0.811617 | 6.401387e-51 | -8.615850e-47 |
| Msa0347530 | Msa0621710 | 0.814511 | 1.484420e-51 | -8.615850e-47 |
| Msa0347530 | Msa0648040 | 0.809507 | 1.828323e-50 | -8.615850e-47 |
| Msa0347530 | Msa0657700 | 0.808565 | 2.909280e-50 | -8.615850e-47 |
| Msa0347530 | Msa0666700 | 0.809977 | 1.449201e-50 | -8.615850e-47 |
| Msa0347530 | Msa0668900 | 0.801872 | 7.336709e-49 | -8.615850e-47 |
| Msa0347530 | Msa0687090 | 0.826432 | 2.722042e-54 | -8.615850e-47 |
| Msa0347530 | Msa0690740 | 0.814673 | 1.366883e-51 | -8.615850e-47 |
| Msa0347530 | Msa0698730 | 0.806851 | 6.730310e-50 | -8.615850e-47 |
| Msa0347530 | Msa0702810 | 0.816450 | 5.495736e-52 | -8.615850e-47 |
| Msa0347530 | Msa0706150 | 0.814032 | 1.894033e-51 | -8.615850e-47 |
| Msa0347530 | Msa0740710 | 0.810442 | 1.150540e-50 | -8.615850e-47 |
| Msa0347530 | Msa0743440 | 0.815342 | 9.710741e-52 | -8.615850e-47 |
| Msa0347530 | Msa0773630 | 0.828297 | 9.723050e-55 | -8.615850e-47 |
| Msa0347530 | Msa0778600 | 0.800602 | 1.334436e-48 | -8.615850e-47 |
| Msa0347530 | Msa0780910 | 0.815373 | 9.555397e-52 | -8.615850e-47 |
| Msa0347530 | Msa0821160 | 0.807926 | 3.980904e-50 | -8.615850e-47 |
| Msa0347530 | Msa0828970 | 0.816198 | 6.257458e-52 | -8.615850e-47 |
| Msa0347530 | Msa0863620 | 0.821050 | 4.960322e-53 | -8.615850e-47 |
| Msa0347530 | Msa0866530 | 0.812442 | 4.231333e-51 | -8.615850e-47 |
| Msa0347530 | Msa0900760 | 0.815919 | 7.224058e-52 | -8.615850e-47 |
| Msa0347530 | Msa0909760 | 0.806268 | 8.931208e-50 | -8.615850e-47 |
| Msa0347530 | Msa0931590 | 0.814764 | 1.304759e-51 | -8.615850e-47 |
| Msa0347530 | Msa0935740 | 0.814637 | 1.392393e-51 | -8.615850e-47 |
| Msa0347530 | Msa0972740 | 0.801287 | 9.668890e-49 | -8.615850e-47 |
| Msa0347530 | Msa1021590 | 0.814056 | 1.871223e-51 | -8.615850e-47 |
| Msa0347530 | Msa1034600 | 0.802261 | 6.100059e-49 | -8.615850e-47 |
| Msa0347530 | Msa1042160 | 0.803506 | 3.373881e-49 | -8.615850e-47 |
| Msa0347530 | Msa1042190 | 0.807696 | 4.455701e-50 | -8.615850e-47 |
| Msa0347530 | Msa1078820 | 0.811291 | 7.532854e-51 | -8.615850e-47 |
| Msa0347530 | Msa1078880 | 0.841074 | 5.925350e-58 | -8.615850e-47 |
| Msa0347530 | Msa1078970 | 0.837942 | 3.858352e-57 | -8.615850e-47 |
| Msa0347530 | Msa1123970 | 0.823301 | 1.491429e-53 | -8.615850e-47 |
| Msa0347530 | Msa1159590 | 0.802295 | 6.003841e-49 | -8.615850e-47 |
| Msa0347530 | Msa1167470 | 0.805537 | 1.272757e-49 | -8.615850e-47 |
| Msa0347530 | Msa1169190 | 0.840349 | 9.176045e-58 | -8.615850e-47 |
| Msa0347530 | Msa1169650 | 0.821898 | 3.159971e-53 | -8.615850e-47 |
| Msa0347530 | Msa1190390 | 0.807308 | 5.386742e-50 | -8.615850e-47 |
| Msa0347530 | Msa1213830 | 0.808375 | 3.194700e-50 | -8.615850e-47 |
| Msa0347530 | Msa1214350 | 0.810664 | 1.029997e-50 | -8.615850e-47 |
| Msa0347530 | Msa1228580 | 0.804498 | 2.099083e-49 | -8.615850e-47 |
| Msa0347530 | Msa1244240 | 0.801705 | 7.939433e-49 | -8.615850e-47 |
| Msa0347530 | Msa1252790 | 0.814330 | 1.628038e-51 | -8.615850e-47 |
| Msa0347530 | Msa1254540 | 0.808024 | 3.793786e-50 | -8.615850e-47 |
| Msa0347530 | Msa1261050 | 0.820757 | 5.794100e-53 | -8.615850e-47 |
| Msa0347530 | Msa1263740 | 0.801971 | 6.999185e-49 | -8.615850e-47 |
| Msa0347530 | Msa1263780 | 0.813710 | 2.229958e-51 | -8.615850e-47 |
| Msa0347530 | Msa1279120 | 0.813230 | 2.843931e-51 | -8.615850e-47 |
| Msa0347530 | Msa1300460 | 0.828695 | 7.794513e-55 | -8.615850e-47 |
| Msa0347530 | Msa1308850 | 0.805030 | 1.624801e-49 | -8.615850e-47 |
| Msa0347530 | Msa1342810 | 0.809237 | 2.090057e-50 | -8.615850e-47 |
| Msa0347530 | Msa1366150 | 0.804312 | 2.295310e-49 | -8.615850e-47 |
| Msa0347530 | Msa1383310 | 0.810731 | 9.963256e-51 | -8.615850e-47 |
| Msa0347530 | Msa1389820 | 0.806357 | 8.554878e-50 | -8.615850e-47 |
| Msa0347530 | Msa1407840 | 0.822586 | 2.188992e-53 | -8.615850e-47 |
| Msa0347530 | Msa1409410 | 0.809955 | 1.464931e-50 | -8.615850e-47 |
| Msa0347530 | Msa1417370 | 0.809923 | 1.488546e-50 | -8.615850e-47 |
| Msa0347530 | Msa1435960 | 0.811252 | 7.683389e-51 | -8.615850e-47 |
| Msa0347530 | Msa1437810 | 0.825683 | 4.100225e-54 | -8.615850e-47 |
| Msa0347530 | Msa1450190 | 0.804838 | 1.782285e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0347530 | MtrunA17_Chr3g0079761 | 97.169 | 989 | 28 | 0 | 1 | 989 | 1 | 989 | 0.0 | 1997 |
| Msa0347530 | MtrunA17_Chr8g0387111 | 36.678 | 867 | 483 | 18 | 161 | 989 | 150 | 988 | 2.63e-178 | 545 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0347530 | AT5G56220.2 | 63.834 | 965 | 315 | 19 | 34 | 989 | 34 | 973 | 0.0 | 1167 |
| Msa0347530 | AT5G56220.1 | 63.834 | 965 | 315 | 19 | 34 | 989 | 34 | 973 | 0.0 | 1167 |
| Msa0347530 | AT4G23440.2 | 34.711 | 968 | 536 | 21 | 73 | 989 | 34 | 956 | 0.0 | 559 |
| Msa0347530 | AT4G23440.1 | 34.711 | 968 | 536 | 21 | 73 | 989 | 34 | 956 | 0.0 | 559 |
Find 178 sgRNAs with CRISPR-Local
Find 215 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTCTTGGAGGAACTGTTTC+AGG | 0.170120 | 3_1:+8633881 | None:intergenic |
| ATGCAATCTCGGATCATTTA+TGG | 0.181943 | 3_1:-8631828 | Msa0347530:CDS |
| TCAATCCAAGCCTCTAAATT+TGG | 0.188009 | 3_1:+8633044 | None:intergenic |
| ATTTGCATTAGTGGAGTTTC+TGG | 0.221785 | 3_1:-8632924 | Msa0347530:CDS |
| TGGAAGAGAGAAAGAGATTA+TGG | 0.238206 | 3_1:-8633246 | Msa0347530:CDS |
| GACATCACAGCTTCCAAGTT+TGG | 0.261069 | 3_1:+8633790 | None:intergenic |
| GCTAACAAATTTGCTGAAAC+TGG | 0.289845 | 3_1:+8632129 | None:intergenic |
| TTTAGCAAATGTTTGTGTTA+TGG | 0.291425 | 3_1:+8631912 | None:intergenic |
| TTGGAGAAAACTAAAGAAAA+AGG | 0.309696 | 3_1:-8632204 | Msa0347530:CDS |
| GTCATTTGCTCGGTTGCTTT+CGG | 0.329782 | 3_1:-8633623 | Msa0347530:CDS |
| TTGAACTTGTCACGAAATTT+CGG | 0.331665 | 3_1:-8632795 | Msa0347530:CDS |
| GGAAATGAGAATGAAATTCT+TGG | 0.342118 | 3_1:+8633866 | None:intergenic |
| AAAATCATTGCATCAGATAA+TGG | 0.343592 | 3_1:+8632498 | None:intergenic |
| GTAGTAATAGTACTAGTAGT+AGG | 0.346349 | 3_1:+8634034 | None:intergenic |
| GCTGCGCTTCTCGTGAGGTT+TGG | 0.361916 | 3_1:-8631988 | Msa0347530:CDS |
| GTGGCTCTTGGAGATATATA+TGG | 0.362538 | 3_1:+8634067 | None:intergenic |
| CATTCTCATTTCCAGTTCCT+AGG | 0.365652 | 3_1:-8633856 | Msa0347530:CDS |
| CGAAATTTCGGTTTGGATGT+TGG | 0.369810 | 3_1:-8632783 | Msa0347530:CDS |
| TGGCATTGGAAAATCTGAAT+TGG | 0.378004 | 3_1:-8632904 | Msa0347530:CDS |
| AAACTTGGTAGGTTGAGTTT+TGG | 0.381311 | 3_1:-8632408 | Msa0347530:CDS |
| AGGTATATAAGCTTAGAGAT+AGG | 0.381940 | 3_1:-8633080 | Msa0347530:CDS |
| TGTTACTAGAGATTCCTATC+TGG | 0.384104 | 3_1:+8634251 | None:intergenic |
| AGTTTGGAGTTTGTGGTAGC+AGG | 0.385757 | 3_1:+8633806 | None:intergenic |
| AAGAACCAAATTTAGAGGCT+TGG | 0.392658 | 3_1:-8633049 | Msa0347530:CDS |
| AAGTAATGTTGCCTTCAATA+AGG | 0.392759 | 3_1:+8631510 | None:intergenic |
| ATACAAAACAACTCGATGTT+AGG | 0.394100 | 3_1:+8632043 | None:intergenic |
| AAAGAGATTATGGAGATTGA+AGG | 0.401871 | 3_1:-8633236 | Msa0347530:CDS |
| TGCAATCTCGGATCATTTAT+GGG | 0.402028 | 3_1:-8631827 | Msa0347530:CDS |
| GAACAAAGAACCAAATTTAG+AGG | 0.404321 | 3_1:-8633054 | Msa0347530:CDS |
| ACAAAACCACCTTGTACCTT+TGG | 0.404656 | 3_1:+8632856 | None:intergenic |
| AAATCTGAGCTTGAGCTTCA+AGG | 0.405691 | 3_1:-8633713 | Msa0347530:CDS |
| CTCAACTTCTTCAAGTGCAT+TGG | 0.406043 | 3_1:+8631639 | None:intergenic |
| AATAGCGTGATTTGCATTAG+TGG | 0.406130 | 3_1:-8632933 | Msa0347530:CDS |
| CCAACAAAATATGCATTCCT+TGG | 0.406509 | 3_1:+8633266 | None:intergenic |
| TAGTCCTTCTGCACTCTTTG+AGG | 0.410930 | 3_1:-8632346 | Msa0347530:CDS |
| GAACTACTAGGAACATCTTC+TGG | 0.416102 | 3_1:+8633980 | None:intergenic |
| TTGGAAAAGGCGGTGGCGGC+AGG | 0.417460 | 3_1:-8633100 | Msa0347530:CDS |
| GGTAATGTATCAAAGAATAT+AGG | 0.420107 | 3_1:+8633515 | None:intergenic |
| CTTGTCACGAAATTTCGGTT+TGG | 0.420709 | 3_1:-8632790 | Msa0347530:CDS |
| TTGTGACTCAAATACAAGAT+TGG | 0.422373 | 3_1:-8631609 | Msa0347530:CDS |
| GCTTCCAAGTTTGGAGTTTG+TGG | 0.428689 | 3_1:+8633799 | None:intergenic |
| TTCATAAGGTGATGATTCTA+TGG | 0.430881 | 3_1:+8634141 | None:intergenic |
| TGAGGTTTGGACTAGCAAAA+AGG | 0.433042 | 3_1:-8631975 | Msa0347530:CDS |
| TAGCTCCACAACCGGAGGTT+CGG | 0.435214 | 3_1:+8631774 | None:intergenic |
| TGGATTGAACAACCGATGAT+AGG | 0.441799 | 3_1:-8633029 | Msa0347530:CDS |
| GCTATAAGAATGCTTCTTGT+CGG | 0.442381 | 3_1:-8632171 | Msa0347530:CDS |
| TTGCTCGGTTGCTTTCGGTT+TGG | 0.442747 | 3_1:-8633618 | Msa0347530:CDS |
| GCAAATGAAACCCTAGGAAC+TGG | 0.443583 | 3_1:+8633845 | None:intergenic |
| GGTCTCACGACTCAATTTGT+TGG | 0.446008 | 3_1:-8631588 | Msa0347530:CDS |
| TGATAAACTCTTTGCTGCAT+TGG | 0.447557 | 3_1:+8632107 | None:intergenic |
| GGTATATAAGCTTAGAGATA+GGG | 0.448957 | 3_1:-8633079 | Msa0347530:CDS |
| GGTTCATTGTTATCAGAACT+TGG | 0.453724 | 3_1:-8632372 | Msa0347530:CDS |
| TGTGGATTGGTGGTGAAGCT+AGG | 0.454758 | 3_1:-8632836 | Msa0347530:CDS |
| AAATATGCATTCCTTGGAAA+AGG | 0.455022 | 3_1:+8633272 | None:intergenic |
| TCACCTCTTCCATGCTTAAA+CGG | 0.458625 | 3_1:+8633567 | None:intergenic |
| GCAGGATGTTACCTTATTGA+AGG | 0.463282 | 3_1:-8631521 | Msa0347530:CDS |
| GGTATCATAATTCTTTACCT+TGG | 0.463545 | 3_1:+8632539 | None:intergenic |
| TAGGAAGAATGTTGGTCATA+AGG | 0.467246 | 3_1:-8633330 | Msa0347530:CDS |
| CAAACATTTGCTAAAAGAAC+AGG | 0.467837 | 3_1:-8631904 | Msa0347530:CDS |
| ATTCTCATTTCCAGTTCCTA+GGG | 0.468075 | 3_1:-8633855 | Msa0347530:CDS |
| GTCGCCTTTAGCTCCACAAC+CGG | 0.470867 | 3_1:+8631766 | None:intergenic |
| TGAGACTAGAGCTAAGTTGT+TGG | 0.473306 | 3_1:-8631488 | Msa0347530:CDS |
| TTGCAAAAGCGAATAAGATT+CGG | 0.475368 | 3_1:+8633743 | None:intergenic |
| CAATGTCTCTTGAGCAGCCA+AGG | 0.477439 | 3_1:+8631375 | None:intergenic |
| GTGCTGATTCCGAGATTGAA+AGG | 0.478758 | 3_1:-8632761 | Msa0347530:CDS |
| CTCATGTTATTATTACTACA+AGG | 0.478892 | 3_1:-8632566 | Msa0347530:CDS |
| ATAGTACTAGTAGTAGGGTT+TGG | 0.478901 | 3_1:+8634040 | None:intergenic |
| CAAATCCGAACCTCCGGTTG+TGG | 0.478906 | 3_1:-8631779 | Msa0347530:CDS |
| GGGTTTGGAACTGTGGCTCT+TGG | 0.479845 | 3_1:+8634055 | None:intergenic |
| AATTCGACCCCTTTCAATCT+CGG | 0.480583 | 3_1:+8632752 | None:intergenic |
| AATTCGCAGCTTTGAAGAGC+AGG | 0.480994 | 3_1:-8632733 | Msa0347530:CDS |
| CAAATGTTTGTGTTATGGAA+TGG | 0.482901 | 3_1:+8631917 | None:intergenic |
| TGGATTCAAATCCGAACCTC+CGG | 0.483206 | 3_1:-8631785 | Msa0347530:CDS |
| CTTCCATGCTTAAACGGTTG+AGG | 0.488878 | 3_1:+8633573 | None:intergenic |
| GCTACCACAAACTCCAAACT+TGG | 0.490521 | 3_1:-8633803 | Msa0347530:CDS |
| GATGAATTGTTTCCTATCAT+CGG | 0.494037 | 3_1:+8633017 | None:intergenic |
| GTGAAAATCATCTCAAGAAG+TGG | 0.494213 | 3_1:-8632080 | Msa0347530:CDS |
| GTGGAAAGACGAAGAAGATT+CGG | 0.495716 | 3_1:-8632010 | Msa0347530:CDS |
| GTGTCATCAGAAAACTCATA+AGG | 0.500099 | 3_1:+8633938 | None:intergenic |
| ATTAGTGGAGTTTCTGGCAT+TGG | 0.501095 | 3_1:-8632918 | Msa0347530:CDS |
| AATGAACAACCATGCAATCT+CGG | 0.501849 | 3_1:-8631839 | Msa0347530:CDS |
| AATCTGCATTGAGTGAAACT+TGG | 0.503323 | 3_1:+8632316 | None:intergenic |
| CATTGTAGAGCAAGTGGCAG+TGG | 0.504637 | 3_1:-8633164 | Msa0347530:CDS |
| ACCTCCGGTTGTGGAGCTAA+AGG | 0.506079 | 3_1:-8631770 | Msa0347530:CDS |
| TCAAGAGACATTGGCAAGGT+TGG | 0.506244 | 3_1:-8631365 | Msa0347530:CDS |
| TGGCAATGGAGGAAGGTGAA+TGG | 0.506398 | 3_1:+8632518 | None:intergenic |
| GAAACAAGAGGTGATTCATA+AGG | 0.507418 | 3_1:+8634127 | None:intergenic |
| TTATCAATTATCAACAAGTA+AGG | 0.507724 | 3_1:+8632663 | None:intergenic |
| GTTTGGAGTTTGTGGTAGCA+GGG | 0.508931 | 3_1:+8633807 | None:intergenic |
| TGCTGATTCCGAGATTGAAA+GGG | 0.509315 | 3_1:-8632760 | Msa0347530:CDS |
| AGTGGACGAATATGTTTGGC+AGG | 0.509448 | 3_1:-8631539 | Msa0347530:CDS |
| TAGTAATAGTACTAGTAGTA+GGG | 0.509727 | 3_1:+8634035 | None:intergenic |
| GAATGCTTCTTGTCGGTGGT+TGG | 0.509859 | 3_1:-8632164 | Msa0347530:CDS |
| AGGACTAATCTACATGATGA+TGG | 0.510441 | 3_1:-8631955 | Msa0347530:CDS |
| AGTATTAGAACTGTGATGCT+TGG | 0.511221 | 3_1:-8631415 | Msa0347530:CDS |
| CAAGGTGGTAGCAACCAGAT+AGG | 0.519220 | 3_1:-8634265 | Msa0347530:CDS |
| AGTGAAACTACGGTTGGAAA+AGG | 0.522401 | 3_1:-8633113 | Msa0347530:CDS |
| ACGGTTGGAAAAGGCGGTGG+CGG | 0.528145 | 3_1:-8633104 | Msa0347530:CDS |
| TATTACTACAAGGCTTTCCA+AGG | 0.531584 | 3_1:-8632556 | Msa0347530:CDS |
| CAAGATCATTGTAGAGCAAG+TGG | 0.533092 | 3_1:-8633170 | Msa0347530:CDS |
| AGAAGTGACATAATCTCAGC+AGG | 0.533539 | 3_1:+8633494 | None:intergenic |
| AAGGATAATCATAATATGCT+AGG | 0.535401 | 3_1:-8633311 | Msa0347530:CDS |
| AATGAGAATGAAATTCTTGG+AGG | 0.543849 | 3_1:+8633869 | None:intergenic |
| GAAGAAAGTGAAACTACGGT+TGG | 0.545153 | 3_1:-8633119 | Msa0347530:CDS |
| TGGCAAGGTTGGTGAGAATG+AGG | 0.546759 | 3_1:-8631354 | Msa0347530:CDS |
| AGTGATAGAGAGGAATATCA+AGG | 0.546866 | 3_1:-8634283 | Msa0347530:CDS |
| GAAAACTCATAAGGATCAGA+AGG | 0.548314 | 3_1:+8633947 | None:intergenic |
| CTTGGCTGCTCAAGAGACAT+TGG | 0.548804 | 3_1:-8631374 | Msa0347530:CDS |
| ACATAACCATGCACAAACCT+TGG | 0.553305 | 3_1:-8631392 | Msa0347530:CDS |
| CAACCGTTTAAGCATGGAAG+AGG | 0.556457 | 3_1:-8633570 | Msa0347530:CDS |
| TAAAGAATGTAAAGAAGCGA+TGG | 0.557061 | 3_1:-8633453 | Msa0347530:CDS |
| AGGATCAGAAGGAGGGGTGT+AGG | 0.557170 | 3_1:+8633958 | None:intergenic |
| TGACTCTATCAGCAATCTCA+TGG | 0.557417 | 3_1:+8633642 | None:intergenic |
| ATTCGGCTGCGCTTCTCGTG+AGG | 0.559569 | 3_1:-8631993 | Msa0347530:CDS |
| CAGATAATGGCAATGGAGGA+AGG | 0.560683 | 3_1:+8632511 | None:intergenic |
| TGCTGATAGAGTCATTTGCT+CGG | 0.561389 | 3_1:-8633633 | Msa0347530:CDS |
| AGGAGTGTCTTCATAAGGAA+AGG | 0.564232 | 3_1:+8632243 | None:intergenic |
| GGAACATCTTCTGGTGTGGA+AGG | 0.564570 | 3_1:+8633989 | None:intergenic |
| TGAGACTGAAGAGGAATGGT+GGG | 0.564823 | 3_1:-8632637 | Msa0347530:CDS |
| GGAAGCTGTGATGTCTACAT+TGG | 0.564889 | 3_1:-8633782 | Msa0347530:CDS |
| AAATTTGCTGAAACTGGAGC+AGG | 0.566382 | 3_1:+8632135 | None:intergenic |
| ATCTTGAGACTGAAGAGGAA+TGG | 0.566670 | 3_1:-8632641 | Msa0347530:CDS |
| GATGTCTACATTGGATTCCA+TGG | 0.568511 | 3_1:-8633773 | Msa0347530:CDS |
| GAATGTAAAGAAGCGATGGA+TGG | 0.569620 | 3_1:-8633449 | Msa0347530:CDS |
| TTTCCTCAACCGTTTAAGCA+TGG | 0.573519 | 3_1:-8633576 | Msa0347530:CDS |
| TTGAGACTGAAGAGGAATGG+TGG | 0.573938 | 3_1:-8632638 | Msa0347530:CDS |
| ATAGCCTCAAAGAGTGCAGA+AGG | 0.577148 | 3_1:+8632342 | None:intergenic |
| ATCTACATGATGATGGATGT+TGG | 0.579983 | 3_1:-8631948 | Msa0347530:CDS |
| TGATAATCTTGAGACTGAAG+AGG | 0.583315 | 3_1:-8632646 | Msa0347530:CDS |
| CTCATAAGGATCAGAAGGAG+GGG | 0.584162 | 3_1:+8633952 | None:intergenic |
| ATAAGAATGCTTCTTGTCGG+TGG | 0.585028 | 3_1:-8632168 | Msa0347530:CDS |
| GGAGGGGTGTAGGAACTACT+AGG | 0.585887 | 3_1:+8633968 | None:intergenic |
| ATAAATGATCCGAGATTGCA+TGG | 0.587209 | 3_1:+8631830 | None:intergenic |
| ACTGAAGAGGAATGGTGGGA+AGG | 0.587834 | 3_1:-8632633 | Msa0347530:CDS |
| AGGATTTGTAGTGGTGAAGG+TGG | 0.587983 | 3_1:+8634009 | None:intergenic |
| AGTAGTAGGGTTTGGAACTG+TGG | 0.588099 | 3_1:+8634048 | None:intergenic |
| GCATCTCGAAAACGCAGTGA+AGG | 0.590532 | 3_1:+8631693 | None:intergenic |
| GAGCAGCCAAGGTTTGTGCA+TGG | 0.592360 | 3_1:+8631386 | None:intergenic |
| AGATGAAGAAAGTGAAACTA+CGG | 0.592811 | 3_1:-8633123 | Msa0347530:CDS |
| ATTGCATCAGATAATGGCAA+TGG | 0.594014 | 3_1:+8632504 | None:intergenic |
| AGAGCTAAGTTGTTGGCTAG+AGG | 0.594668 | 3_1:-8631481 | Msa0347530:CDS |
| TTCTTTGCAAATGAAACCCT+AGG | 0.597268 | 3_1:+8633839 | None:intergenic |
| AATTCTATGAGAAACTTGGT+AGG | 0.599038 | 3_1:-8632419 | Msa0347530:CDS |
| GCATCAGATAATGGCAATGG+AGG | 0.599792 | 3_1:+8632507 | None:intergenic |
| AAAAGAGTATTCAATTGATG+AGG | 0.599982 | 3_1:-8632457 | Msa0347530:CDS |
| GCTAAGTTGTTGGCTAGAGG+AGG | 0.602343 | 3_1:-8631478 | Msa0347530:CDS |
| GCCTTTAGCTCCACAACCGG+AGG | 0.602709 | 3_1:+8631769 | None:intergenic |
| ACTCATAAGGATCAGAAGGA+GGG | 0.604976 | 3_1:+8633951 | None:intergenic |
| GGAAGGATTTGTAGTGGTGA+AGG | 0.606188 | 3_1:+8634006 | None:intergenic |
| AACTCATAAGGATCAGAAGG+AGG | 0.608649 | 3_1:+8633950 | None:intergenic |
| TTTGATGTATAAAACCATGT+CGG | 0.610935 | 3_1:+8631744 | None:intergenic |
| GCTGAAACAAATGCTGATGA+AGG | 0.612105 | 3_1:+8634100 | None:intergenic |
| AGACTTGGTAGGAAGAATGT+TGG | 0.613159 | 3_1:-8633338 | Msa0347530:CDS |
| TAGATATTACCAAAGGTACA+AGG | 0.613542 | 3_1:-8632865 | Msa0347530:CDS |
| ACTAGGAACATCTTCTGGTG+TGG | 0.614082 | 3_1:+8633985 | None:intergenic |
| ACTACGGTTGGAAAAGGCGG+TGG | 0.614665 | 3_1:-8633107 | Msa0347530:CDS |
| ATTCATGGAAAGTGATAGAG+AGG | 0.616199 | 3_1:-8634293 | None:intergenic |
| ATATAAGCTTAGAGATAGGG+AGG | 0.616295 | 3_1:-8633076 | Msa0347530:CDS |
| ACATTTGCTAAAAGAACAGG+TGG | 0.617095 | 3_1:-8631901 | Msa0347530:CDS |
| TTTGGAGTTTGTGGTAGCAG+GGG | 0.619019 | 3_1:+8633808 | None:intergenic |
| AGGACATTTAGACAGTGGTA+AGG | 0.621592 | 3_1:-8631458 | Msa0347530:CDS |
| GAAACAAATGCTGATGAAGG+TGG | 0.627253 | 3_1:+8634103 | None:intergenic |
| AAGCGTTCAAGAGAATCAAG+AGG | 0.627264 | 3_1:-8632704 | Msa0347530:CDS |
| GGAGCTAAAGGCGACCGACA+TGG | 0.628008 | 3_1:-8631758 | Msa0347530:CDS |
| AGTGGCAGTGGACAATCTGA+AGG | 0.633726 | 3_1:-8633152 | Msa0347530:CDS |
| TTGCTCATAGATATTACCAA+AGG | 0.634011 | 3_1:-8632872 | Msa0347530:CDS |
| TGGTGTGGAAGGATTTGTAG+TGG | 0.638361 | 3_1:+8634000 | None:intergenic |
| TCAGTATTGCACAAGAACAA+TGG | 0.648299 | 3_1:-8632278 | Msa0347530:CDS |
| TAGGAAACAATTCATCGAAG+AGG | 0.654306 | 3_1:-8633010 | Msa0347530:CDS |
| GCTGATTCCGAGATTGAAAG+GGG | 0.663123 | 3_1:-8632759 | Msa0347530:CDS |
| AGCGTTCAAGAGAATCAAGA+GGG | 0.664898 | 3_1:-8632703 | Msa0347530:CDS |
| GATAGAGAGGAATATCAAGG+TGG | 0.665112 | 3_1:-8634280 | Msa0347530:CDS |
| CTGCTCAAGAGACATTGGCA+AGG | 0.674178 | 3_1:-8631369 | Msa0347530:CDS |
| GAAACTACGGTTGGAAAAGG+CGG | 0.688660 | 3_1:-8633110 | Msa0347530:CDS |
| GTGAAGGCTTGAATCGCGAG+CGG | 0.703011 | 3_1:+8631709 | None:intergenic |
| AGAGGAGGACATTTAGACAG+TGG | 0.704916 | 3_1:-8631463 | Msa0347530:CDS |
| GATGAAGGTGGAGAAACAAG+AGG | 0.729329 | 3_1:+8634115 | None:intergenic |
| ATATTACCAAAGGTACAAGG+TGG | 0.750065 | 3_1:-8632862 | Msa0347530:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATCAATTATCAACAAGTA+AGG | + | chr3_1:8632971-8632990 | None:intergenic | 20.0% |
| ! | TAGTAATAGTACTAGTAGTA+GGG | + | chr3_1:8631599-8631618 | None:intergenic | 25.0% |
| ! | GGTAATGTATCAAAGAATAT+AGG | + | chr3_1:8632119-8632138 | None:intergenic | 25.0% |
| ! | AAGGATAATCATAATATGCT+AGG | - | chr3_1:8632320-8632339 | Msa0347530:CDS | 25.0% |
| ! | AAGAATAAGAAGTCAAAAAG+TGG | - | chr3_1:8632647-8632666 | Msa0347530:CDS | 25.0% |
| ! | CTCATGTTATTATTACTACA+AGG | - | chr3_1:8633065-8633084 | Msa0347530:CDS | 25.0% |
| ! | AAAATCATTGCATCAGATAA+TGG | + | chr3_1:8633136-8633155 | None:intergenic | 25.0% |
| !!! | AAAAGAGTATTCAATTGATG+AGG | - | chr3_1:8633174-8633193 | Msa0347530:CDS | 25.0% |
| !! | GTTTCTCATAGAATTTTTCA+AGG | + | chr3_1:8633207-8633226 | None:intergenic | 25.0% |
| ! | GAAAAATTCTATGAGAAACT+TGG | - | chr3_1:8633208-8633227 | Msa0347530:CDS | 25.0% |
| ! | CCAAAGTTTCTAAACAAAAA+AGG | + | chr3_1:8633411-8633430 | None:intergenic | 25.0% |
| !!! | CCTTTTTTGTTTAGAAACTT+TGG | - | chr3_1:8633408-8633427 | Msa0347530:CDS | 25.0% |
| ! | TTGGAGAAAACTAAAGAAAA+AGG | - | chr3_1:8633427-8633446 | Msa0347530:CDS | 25.0% |
| ! | TTTAGCAAATGTTTGTGTTA+TGG | + | chr3_1:8633722-8633741 | None:intergenic | 25.0% |
| ! | TTTGATGTATAAAACCATGT+CGG | + | chr3_1:8633890-8633909 | None:intergenic | 25.0% |
| !!! | ACTCAATTTGTTGGAAAAAA+AGG | - | chr3_1:8634052-8634071 | Msa0347530:CDS | 25.0% |
| ! | TCTATGGAAGTTTTTGTGTT+TGG | + | chr3_1:8631477-8631496 | None:intergenic | 30.0% |
| TTCATAAGGTGATGATTCTA+TGG | + | chr3_1:8631493-8631512 | None:intergenic | 30.0% | |
| GTAGTAATAGTACTAGTAGT+AGG | + | chr3_1:8631600-8631619 | None:intergenic | 30.0% | |
| AATGAGAATGAAATTCTTGG+AGG | + | chr3_1:8631765-8631784 | None:intergenic | 30.0% | |
| GGAAATGAGAATGAAATTCT+TGG | + | chr3_1:8631768-8631787 | None:intergenic | 30.0% | |
| TTGCAAAAGCGAATAAGATT+CGG | + | chr3_1:8631891-8631910 | None:intergenic | 30.0% | |
| TAAAGAATGTAAAGAAGCGA+TGG | - | chr3_1:8632178-8632197 | Msa0347530:CDS | 30.0% | |
| !! | AGTATTTTAAGAGCAAGACT+TGG | - | chr3_1:8632278-8632297 | Msa0347530:CDS | 30.0% |
| ! | AGAGTTTATTACCTTTTCCA+AGG | - | chr3_1:8632348-8632367 | Msa0347530:CDS | 30.0% |
| AAATATGCATTCCTTGGAAA+AGG | + | chr3_1:8632362-8632381 | None:intergenic | 30.0% | |
| AAAGAGATTATGGAGATTGA+AGG | - | chr3_1:8632395-8632414 | Msa0347530:CDS | 30.0% | |
| !! | GAGATTGAAGGTTTACTTTT+TGG | - | chr3_1:8632407-8632426 | Msa0347530:CDS | 30.0% |
| !!! | AAGGTTTACTTTTTGGAAGT+AGG | - | chr3_1:8632414-8632433 | Msa0347530:CDS | 30.0% |
| !! | TGGAAGTAGGAATTGTTTTA+TGG | - | chr3_1:8632427-8632446 | Msa0347530:CDS | 30.0% |
| AGATGAAGAAAGTGAAACTA+CGG | - | chr3_1:8632508-8632527 | Msa0347530:CDS | 30.0% | |
| AGGTATATAAGCTTAGAGAT+AGG | - | chr3_1:8632551-8632570 | Msa0347530:CDS | 30.0% | |
| GGTATATAAGCTTAGAGATA+GGG | - | chr3_1:8632552-8632571 | Msa0347530:CDS | 30.0% | |
| GAACAAAGAACCAAATTTAG+AGG | - | chr3_1:8632577-8632596 | Msa0347530:CDS | 30.0% | |
| GATGAATTGTTTCCTATCAT+CGG | + | chr3_1:8632617-8632636 | None:intergenic | 30.0% | |
| TTGCTCATAGATATTACCAA+AGG | - | chr3_1:8632759-8632778 | Msa0347530:CDS | 30.0% | |
| ! | TAGATATTACCAAAGGTACA+AGG | - | chr3_1:8632766-8632785 | Msa0347530:CDS | 30.0% |
| TTGAACTTGTCACGAAATTT+CGG | - | chr3_1:8632836-8632855 | Msa0347530:CDS | 30.0% | |
| GGTATCATAATTCTTTACCT+TGG | + | chr3_1:8633095-8633114 | None:intergenic | 30.0% | |
| !! | GATGCAATGATTTTGATAAG+AGG | - | chr3_1:8633142-8633161 | Msa0347530:CDS | 30.0% |
| AATTCTATGAGAAACTTGGT+AGG | - | chr3_1:8633212-8633231 | Msa0347530:CDS | 30.0% | |
| !!! | AGTTTTGGTTTGATGATGAT+TGG | - | chr3_1:8633238-8633257 | Msa0347530:CDS | 30.0% |
| !! | AAAAAAGGAGTGTCTTCATA+AGG | + | chr3_1:8633396-8633415 | None:intergenic | 30.0% |
| ATACAAAACAACTCGATGTT+AGG | + | chr3_1:8633591-8633610 | None:intergenic | 30.0% | |
| CAAATGTTTGTGTTATGGAA+TGG | + | chr3_1:8633717-8633736 | None:intergenic | 30.0% | |
| ! | CAAACATTTGCTAAAAGAAC+AGG | - | chr3_1:8633727-8633746 | Msa0347530:CDS | 30.0% |
| !!! | GAATCAGCTTTTCTTGTTTT+TGG | - | chr3_1:8633826-8633845 | Msa0347530:CDS | 30.0% |
| TTGTGACTCAAATACAAGAT+TGG | - | chr3_1:8634022-8634041 | Msa0347530:CDS | 30.0% | |
| AAAAAGTGGACGAATATGTT+TGG | - | chr3_1:8634088-8634107 | Msa0347530:CDS | 30.0% | |
| AAGTAATGTTGCCTTCAATA+AGG | + | chr3_1:8634124-8634143 | None:intergenic | 30.0% | |
| AGTGATAGAGAGGAATATCA+AGG | - | chr3_1:8631348-8631367 | Msa0347530:CDS | 35.0% | |
| TGTTACTAGAGATTCCTATC+TGG | + | chr3_1:8631383-8631402 | None:intergenic | 35.0% | |
| !!! | CCTTGTTTTTTGATGCTAGT+TGG | + | chr3_1:8631426-8631445 | None:intergenic | 35.0% |
| CCAACTAGCATCAAAAAACA+AGG | - | chr3_1:8631423-8631442 | Msa0347530:CDS | 35.0% | |
| !! | GAAGTTTTTGTGTTTGGTGA+AGG | + | chr3_1:8631471-8631490 | None:intergenic | 35.0% |
| GAAACAAGAGGTGATTCATA+AGG | + | chr3_1:8631507-8631526 | None:intergenic | 35.0% | |
| ATAGTACTAGTAGTAGGGTT+TGG | + | chr3_1:8631594-8631613 | None:intergenic | 35.0% | |
| GAAAACTCATAAGGATCAGA+AGG | + | chr3_1:8631687-8631706 | None:intergenic | 35.0% | |
| GTGTCATCAGAAAACTCATA+AGG | + | chr3_1:8631696-8631715 | None:intergenic | 35.0% | |
| ATTCTCATTTCCAGTTCCTA+GGG | - | chr3_1:8631776-8631795 | Msa0347530:CDS | 35.0% | |
| TTCTTTGCAAATGAAACCCT+AGG | + | chr3_1:8631795-8631814 | None:intergenic | 35.0% | |
| ! | TAAGATTCGGATTTTGTCCA+TGG | + | chr3_1:8631878-8631897 | None:intergenic | 35.0% |
| !! | ATCTTATTCGCTTTTGCAAG+TGG | - | chr3_1:8631892-8631911 | Msa0347530:CDS | 35.0% |
| ! | TTTTGTCTAGAGGCTAATGA+TGG | - | chr3_1:8632224-8632243 | Msa0347530:CDS | 35.0% |
| !! | TTTTAAGAGCAAGACTTGGT+AGG | - | chr3_1:8632282-8632301 | Msa0347530:CDS | 35.0% |
| TAGGAAGAATGTTGGTCATA+AGG | - | chr3_1:8632301-8632320 | Msa0347530:CDS | 35.0% | |
| CCAACAAAATATGCATTCCT+TGG | + | chr3_1:8632368-8632387 | None:intergenic | 35.0% | |
| ! | CCAAGGAATGCATATTTTGT+TGG | - | chr3_1:8632365-8632384 | Msa0347530:CDS | 35.0% |
| TGGAAGAGAGAAAGAGATTA+TGG | - | chr3_1:8632385-8632404 | Msa0347530:CDS | 35.0% | |
| ATATAAGCTTAGAGATAGGG+AGG | - | chr3_1:8632555-8632574 | Msa0347530:CDS | 35.0% | |
| AAGAACCAAATTTAGAGGCT+TGG | - | chr3_1:8632582-8632601 | Msa0347530:CDS | 35.0% | |
| TCAATCCAAGCCTCTAAATT+TGG | + | chr3_1:8632590-8632609 | None:intergenic | 35.0% | |
| TAGGAAACAATTCATCGAAG+AGG | - | chr3_1:8632621-8632640 | Msa0347530:CDS | 35.0% | |
| ! | AATAGCGTGATTTGCATTAG+TGG | - | chr3_1:8632698-8632717 | Msa0347530:CDS | 35.0% |
| ATTTGCATTAGTGGAGTTTC+TGG | - | chr3_1:8632707-8632726 | Msa0347530:CDS | 35.0% | |
| ! | TGGCATTGGAAAATCTGAAT+TGG | - | chr3_1:8632727-8632746 | Msa0347530:CDS | 35.0% |
| ! | ATATTACCAAAGGTACAAGG+TGG | - | chr3_1:8632769-8632788 | Msa0347530:CDS | 35.0% |
| TGATAATCTTGAGACTGAAG+AGG | - | chr3_1:8632985-8633004 | Msa0347530:CDS | 35.0% | |
| TTGATACCGAAAAACAACAC+AGG | - | chr3_1:8633037-8633056 | Msa0347530:CDS | 35.0% | |
| TATTACTACAAGGCTTTCCA+AGG | - | chr3_1:8633075-8633094 | Msa0347530:CDS | 35.0% | |
| ! | ATTGCATCAGATAATGGCAA+TGG | + | chr3_1:8633130-8633149 | None:intergenic | 35.0% |
| !! | AAACTTGGTAGGTTGAGTTT+TGG | - | chr3_1:8633223-8633242 | Msa0347530:CDS | 35.0% |
| GGTTCATTGTTATCAGAACT+TGG | - | chr3_1:8633259-8633278 | Msa0347530:CDS | 35.0% | |
| AATCTGCATTGAGTGAAACT+TGG | + | chr3_1:8633318-8633337 | None:intergenic | 35.0% | |
| TCAGTATTGCACAAGAACAA+TGG | - | chr3_1:8633353-8633372 | Msa0347530:CDS | 35.0% | |
| GCTATAAGAATGCTTCTTGT+CGG | - | chr3_1:8633460-8633479 | Msa0347530:CDS | 35.0% | |
| !! | GCTAACAAATTTGCTGAAAC+TGG | + | chr3_1:8633505-8633524 | None:intergenic | 35.0% |
| TGATAAACTCTTTGCTGCAT+TGG | + | chr3_1:8633527-8633546 | None:intergenic | 35.0% | |
| GTGAAAATCATCTCAAGAAG+TGG | - | chr3_1:8633551-8633570 | Msa0347530:CDS | 35.0% | |
| AGGACTAATCTACATGATGA+TGG | - | chr3_1:8633676-8633695 | Msa0347530:CDS | 35.0% | |
| !! | ATCTACATGATGATGGATGT+TGG | - | chr3_1:8633683-8633702 | Msa0347530:CDS | 35.0% |
| ! | ACATTTGCTAAAAGAACAGG+TGG | - | chr3_1:8633730-8633749 | Msa0347530:CDS | 35.0% |
| AATGAACAACCATGCAATCT+CGG | - | chr3_1:8633792-8633811 | Msa0347530:CDS | 35.0% | |
| ATAAATGATCCGAGATTGCA+TGG | + | chr3_1:8633804-8633823 | None:intergenic | 35.0% | |
| ATGCAATCTCGGATCATTTA+TGG | - | chr3_1:8633803-8633822 | Msa0347530:CDS | 35.0% | |
| TGCAATCTCGGATCATTTAT+GGG | - | chr3_1:8633804-8633823 | Msa0347530:CDS | 35.0% | |
| AGTATTAGAACTGTGATGCT+TGG | - | chr3_1:8634216-8634235 | Msa0347530:CDS | 35.0% | |
| GATAGAGAGGAATATCAAGG+TGG | - | chr3_1:8631351-8631370 | Msa0347530:CDS | 40.0% | |
| GAAACAAATGCTGATGAAGG+TGG | + | chr3_1:8631531-8631550 | None:intergenic | 40.0% | |
| GCTGAAACAAATGCTGATGA+AGG | + | chr3_1:8631534-8631553 | None:intergenic | 40.0% | |
| GTGGCTCTTGGAGATATATA+TGG | + | chr3_1:8631567-8631586 | None:intergenic | 40.0% | |
| GAACTACTAGGAACATCTTC+TGG | + | chr3_1:8631654-8631673 | None:intergenic | 40.0% | |
| ACTCATAAGGATCAGAAGGA+GGG | + | chr3_1:8631683-8631702 | None:intergenic | 40.0% | |
| AACTCATAAGGATCAGAAGG+AGG | + | chr3_1:8631684-8631703 | None:intergenic | 40.0% | |
| ATTCTTGGAGGAACTGTTTC+AGG | + | chr3_1:8631753-8631772 | None:intergenic | 40.0% | |
| CATTCTCATTTCCAGTTCCT+AGG | - | chr3_1:8631775-8631794 | Msa0347530:CDS | 40.0% | |
| GATGTCTACATTGGATTCCA+TGG | - | chr3_1:8631858-8631877 | Msa0347530:CDS | 40.0% | |
| AAATCTGAGCTTGAGCTTCA+AGG | - | chr3_1:8631918-8631937 | Msa0347530:CDS | 40.0% | |
| TGACTCTATCAGCAATCTCA+TGG | + | chr3_1:8631992-8632011 | None:intergenic | 40.0% | |
| TGCTGATAGAGTCATTTGCT+CGG | - | chr3_1:8631998-8632017 | Msa0347530:CDS | 40.0% | |
| TTTCCTCAACCGTTTAAGCA+TGG | - | chr3_1:8632055-8632074 | Msa0347530:CDS | 40.0% | |
| TCACCTCTTCCATGCTTAAA+CGG | + | chr3_1:8632067-8632086 | None:intergenic | 40.0% | |
| AGAAGTGACATAATCTCAGC+AGG | + | chr3_1:8632140-8632159 | None:intergenic | 40.0% | |
| GAATGTAAAGAAGCGATGGA+TGG | - | chr3_1:8632182-8632201 | Msa0347530:CDS | 40.0% | |
| !! | GTGCAATGAGTTTTGTCTAG+AGG | - | chr3_1:8632214-8632233 | Msa0347530:CDS | 40.0% |
| ! | AGACTTGGTAGGAAGAATGT+TGG | - | chr3_1:8632293-8632312 | Msa0347530:CDS | 40.0% |
| CAAGATCATTGTAGAGCAAG+TGG | - | chr3_1:8632461-8632480 | Msa0347530:CDS | 40.0% | |
| GAAGAAAGTGAAACTACGGT+TGG | - | chr3_1:8632512-8632531 | Msa0347530:CDS | 40.0% | |
| AGTGAAACTACGGTTGGAAA+AGG | - | chr3_1:8632518-8632537 | Msa0347530:CDS | 40.0% | |
| TGGATTGAACAACCGATGAT+AGG | - | chr3_1:8632602-8632621 | Msa0347530:CDS | 40.0% | |
| !! | ATTAGTGGAGTTTCTGGCAT+TGG | - | chr3_1:8632713-8632732 | Msa0347530:CDS | 40.0% |
| ACAAAACCACCTTGTACCTT+TGG | + | chr3_1:8632778-8632797 | None:intergenic | 40.0% | |
| !! | AAAGGTACAAGGTGGTTTTG+TGG | - | chr3_1:8632777-8632796 | Msa0347530:CDS | 40.0% |
| !!! | TACAAGGTGGTTTTGTGGAT+TGG | - | chr3_1:8632782-8632801 | Msa0347530:CDS | 40.0% |
| CTTGTCACGAAATTTCGGTT+TGG | - | chr3_1:8632841-8632860 | Msa0347530:CDS | 40.0% | |
| !! | CGAAATTTCGGTTTGGATGT+TGG | - | chr3_1:8632848-8632867 | Msa0347530:CDS | 40.0% |
| !! | TGCTGATTCCGAGATTGAAA+GGG | - | chr3_1:8632871-8632890 | Msa0347530:CDS | 40.0% |
| AATTCGACCCCTTTCAATCT+CGG | + | chr3_1:8632882-8632901 | None:intergenic | 40.0% | |
| AAGCGTTCAAGAGAATCAAG+AGG | - | chr3_1:8632927-8632946 | Msa0347530:CDS | 40.0% | |
| AGCGTTCAAGAGAATCAAGA+GGG | - | chr3_1:8632928-8632947 | Msa0347530:CDS | 40.0% | |
| ! | AGAATCAAGAGGGAGCTTTT+TGG | - | chr3_1:8632938-8632957 | Msa0347530:CDS | 40.0% |
| ATCTTGAGACTGAAGAGGAA+TGG | - | chr3_1:8632990-8633009 | Msa0347530:CDS | 40.0% | |
| ATACCGAAAAACAACACAGG+AGG | - | chr3_1:8633040-8633059 | Msa0347530:CDS | 40.0% | |
| TACCGAAAAACAACACAGGA+GGG | - | chr3_1:8633041-8633060 | Msa0347530:CDS | 40.0% | |
| !! | AGGAGTGTCTTCATAAGGAA+AGG | + | chr3_1:8633391-8633410 | None:intergenic | 40.0% |
| ATAAGAATGCTTCTTGTCGG+TGG | - | chr3_1:8633463-8633482 | Msa0347530:CDS | 40.0% | |
| !! | AAATTTGCTGAAACTGGAGC+AGG | + | chr3_1:8633499-8633518 | None:intergenic | 40.0% |
| GTGGAAAGACGAAGAAGATT+CGG | - | chr3_1:8633621-8633640 | Msa0347530:CDS | 40.0% | |
| !! | TGAGGTTTGGACTAGCAAAA+AGG | - | chr3_1:8633656-8633675 | Msa0347530:CDS | 40.0% |
| !! | GTGCATTGGTGCAAACTTTT+AGG | + | chr3_1:8633981-8634000 | None:intergenic | 40.0% |
| CTCAACTTCTTCAAGTGCAT+TGG | + | chr3_1:8633995-8634014 | None:intergenic | 40.0% | |
| GTTGCAAAGACGACAAAAAG+TGG | - | chr3_1:8634074-8634093 | Msa0347530:CDS | 40.0% | |
| GCAGGATGTTACCTTATTGA+AGG | - | chr3_1:8634110-8634129 | Msa0347530:CDS | 40.0% | |
| TGAGACTAGAGCTAAGTTGT+TGG | - | chr3_1:8634143-8634162 | Msa0347530:CDS | 40.0% | |
| AGGACATTTAGACAGTGGTA+AGG | - | chr3_1:8634173-8634192 | Msa0347530:CDS | 40.0% | |
| ACATAACCATGCACAAACCT+TGG | - | chr3_1:8634239-8634258 | Msa0347530:CDS | 40.0% | |
| GATGAAGGTGGAGAAACAAG+AGG | + | chr3_1:8631519-8631538 | None:intergenic | 45.0% | |
| ! | AGTAGTAGGGTTTGGAACTG+TGG | + | chr3_1:8631586-8631605 | None:intergenic | 45.0% |
| AGGATTTGTAGTGGTGAAGG+TGG | + | chr3_1:8631625-8631644 | None:intergenic | 45.0% | |
| GGAAGGATTTGTAGTGGTGA+AGG | + | chr3_1:8631628-8631647 | None:intergenic | 45.0% | |
| TGGTGTGGAAGGATTTGTAG+TGG | + | chr3_1:8631634-8631653 | None:intergenic | 45.0% | |
| ACTAGGAACATCTTCTGGTG+TGG | + | chr3_1:8631649-8631668 | None:intergenic | 45.0% | |
| CTCATAAGGATCAGAAGGAG+GGG | + | chr3_1:8631682-8631701 | None:intergenic | 45.0% | |
| GCAAATGAAACCCTAGGAAC+TGG | + | chr3_1:8631789-8631808 | None:intergenic | 45.0% | |
| ! | TTTGGAGTTTGTGGTAGCAG+GGG | + | chr3_1:8631826-8631845 | None:intergenic | 45.0% |
| ! | GTTTGGAGTTTGTGGTAGCA+GGG | + | chr3_1:8631827-8631846 | None:intergenic | 45.0% |
| ! | AGTTTGGAGTTTGTGGTAGC+AGG | + | chr3_1:8631828-8631847 | None:intergenic | 45.0% |
| GCTACCACAAACTCCAAACT+TGG | - | chr3_1:8631828-8631847 | Msa0347530:CDS | 45.0% | |
| ! | GCTTCCAAGTTTGGAGTTTG+TGG | + | chr3_1:8631835-8631854 | None:intergenic | 45.0% |
| GACATCACAGCTTCCAAGTT+TGG | + | chr3_1:8631844-8631863 | None:intergenic | 45.0% | |
| GGAAGCTGTGATGTCTACAT+TGG | - | chr3_1:8631849-8631868 | Msa0347530:CDS | 45.0% | |
| ! | GTCATTTGCTCGGTTGCTTT+CGG | - | chr3_1:8632008-8632027 | Msa0347530:CDS | 45.0% |
| CTTCCATGCTTAAACGGTTG+AGG | + | chr3_1:8632061-8632080 | None:intergenic | 45.0% | |
| CAACCGTTTAAGCATGGAAG+AGG | - | chr3_1:8632061-8632080 | Msa0347530:CDS | 45.0% | |
| GAAACTACGGTTGGAAAAGG+CGG | - | chr3_1:8632521-8632540 | Msa0347530:CDS | 45.0% | |
| !!! | AAGGTGGTTTTGTGGATTGG+TGG | - | chr3_1:8632785-8632804 | Msa0347530:CDS | 45.0% |
| !! | GTGCTGATTCCGAGATTGAA+AGG | - | chr3_1:8632870-8632889 | Msa0347530:CDS | 45.0% |
| ! | GCTGATTCCGAGATTGAAAG+GGG | - | chr3_1:8632872-8632891 | Msa0347530:CDS | 45.0% |
| !! | AATTCGCAGCTTTGAAGAGC+AGG | - | chr3_1:8632898-8632917 | Msa0347530:CDS | 45.0% |
| TTGAGACTGAAGAGGAATGG+TGG | - | chr3_1:8632993-8633012 | Msa0347530:CDS | 45.0% | |
| TGAGACTGAAGAGGAATGGT+GGG | - | chr3_1:8632994-8633013 | Msa0347530:CDS | 45.0% | |
| !!! | GTCCCTCCTGTGTTGTTTTT+CGG | + | chr3_1:8633046-8633065 | None:intergenic | 45.0% |
| ! | CAGATAATGGCAATGGAGGA+AGG | + | chr3_1:8633123-8633142 | None:intergenic | 45.0% |
| ! | GCATCAGATAATGGCAATGG+AGG | + | chr3_1:8633127-8633146 | None:intergenic | 45.0% |
| TAGTCCTTCTGCACTCTTTG+AGG | - | chr3_1:8633285-8633304 | Msa0347530:CDS | 45.0% | |
| ! | ATAGCCTCAAAGAGTGCAGA+AGG | + | chr3_1:8633292-8633311 | None:intergenic | 45.0% |
| !! | CGAGTTGTTTTGTATCGTCG+CGG | - | chr3_1:8633596-8633615 | Msa0347530:CDS | 45.0% |
| TGGATTCAAATCCGAACCTC+CGG | - | chr3_1:8633846-8633865 | Msa0347530:CDS | 45.0% | |
| GGTCTCACGACTCAATTTGT+TGG | - | chr3_1:8634043-8634062 | Msa0347530:CDS | 45.0% | |
| AGTGGACGAATATGTTTGGC+AGG | - | chr3_1:8634092-8634111 | Msa0347530:CDS | 45.0% | |
| ! | AGAGCTAAGTTGTTGGCTAG+AGG | - | chr3_1:8634150-8634169 | Msa0347530:CDS | 45.0% |
| AGAGGAGGACATTTAGACAG+TGG | - | chr3_1:8634168-8634187 | Msa0347530:CDS | 45.0% | |
| TCAAGAGACATTGGCAAGGT+TGG | - | chr3_1:8634266-8634285 | Msa0347530:CDS | 45.0% | |
| CAAGGTGGTAGCAACCAGAT+AGG | - | chr3_1:8631366-8631385 | Msa0347530:CDS | 50.0% | |
| GGAACATCTTCTGGTGTGGA+AGG | + | chr3_1:8631645-8631664 | None:intergenic | 50.0% | |
| ! | TTGCTCGGTTGCTTTCGGTT+TGG | - | chr3_1:8632013-8632032 | Msa0347530:CDS | 50.0% |
| CATTGTAGAGCAAGTGGCAG+TGG | - | chr3_1:8632467-8632486 | Msa0347530:CDS | 50.0% | |
| AGTGGCAGTGGACAATCTGA+AGG | - | chr3_1:8632479-8632498 | Msa0347530:CDS | 50.0% | |
| !! | TGTGGATTGGTGGTGAAGCT+AGG | - | chr3_1:8632795-8632814 | Msa0347530:CDS | 50.0% |
| ! | ACTGAAGAGGAATGGTGGGA+AGG | - | chr3_1:8632998-8633017 | Msa0347530:CDS | 50.0% |
| TGGCAATGGAGGAAGGTGAA+TGG | + | chr3_1:8633116-8633135 | None:intergenic | 50.0% | |
| GAATGCTTCTTGTCGGTGGT+TGG | - | chr3_1:8633467-8633486 | Msa0347530:CDS | 50.0% | |
| GCATCTCGAAAACGCAGTGA+AGG | + | chr3_1:8633941-8633960 | None:intergenic | 50.0% | |
| ! | GCTAAGTTGTTGGCTAGAGG+AGG | - | chr3_1:8634153-8634172 | Msa0347530:CDS | 50.0% |
| CAATGTCTCTTGAGCAGCCA+AGG | + | chr3_1:8634259-8634278 | None:intergenic | 50.0% | |
| CTTGGCTGCTCAAGAGACAT+TGG | - | chr3_1:8634257-8634276 | Msa0347530:CDS | 50.0% | |
| CTGCTCAAGAGACATTGGCA+AGG | - | chr3_1:8634262-8634281 | Msa0347530:CDS | 50.0% | |
| !! | TGGCAAGGTTGGTGAGAATG+AGG | - | chr3_1:8634277-8634296 | Msa0347530:CDS | 50.0% |
| ! | GGGTTTGGAACTGTGGCTCT+TGG | + | chr3_1:8631579-8631598 | None:intergenic | 55.0% |
| ! | GGAGGGGTGTAGGAACTACT+AGG | + | chr3_1:8631666-8631685 | None:intergenic | 55.0% |
| ! | AGGATCAGAAGGAGGGGTGT+AGG | + | chr3_1:8631676-8631695 | None:intergenic | 55.0% |
| ACTACGGTTGGAAAAGGCGG+TGG | - | chr3_1:8632524-8632543 | Msa0347530:CDS | 55.0% | |
| ! | GTTTTGTATCGTCGCGGACG+TGG | - | chr3_1:8633602-8633621 | Msa0347530:CDS | 55.0% |
| CAAATCCGAACCTCCGGTTG+TGG | - | chr3_1:8633852-8633871 | Msa0347530:CDS | 55.0% | |
| TAGCTCCACAACCGGAGGTT+CGG | + | chr3_1:8633860-8633879 | None:intergenic | 55.0% | |
| ACCTCCGGTTGTGGAGCTAA+AGG | - | chr3_1:8633861-8633880 | Msa0347530:CDS | 55.0% | |
| ! | GTCGCCTTTAGCTCCACAAC+CGG | + | chr3_1:8633868-8633887 | None:intergenic | 55.0% |
| GTGAAGGCTTGAATCGCGAG+CGG | + | chr3_1:8633925-8633944 | None:intergenic | 55.0% | |
| GAGCAGCCAAGGTTTGTGCA+TGG | + | chr3_1:8634248-8634267 | None:intergenic | 55.0% | |
| ACGGTTGGAAAAGGCGGTGG+CGG | - | chr3_1:8632527-8632546 | Msa0347530:CDS | 60.0% | |
| ATTCGGCTGCGCTTCTCGTG+AGG | - | chr3_1:8633638-8633657 | Msa0347530:CDS | 60.0% | |
| GCTGCGCTTCTCGTGAGGTT+TGG | - | chr3_1:8633643-8633662 | Msa0347530:CDS | 60.0% | |
| ! | GCCTTTAGCTCCACAACCGG+AGG | + | chr3_1:8633865-8633884 | None:intergenic | 60.0% |
| GGAGCTAAAGGCGACCGACA+TGG | - | chr3_1:8633873-8633892 | Msa0347530:CDS | 60.0% | |
| ! | TTGGAAAAGGCGGTGGCGGC+AGG | - | chr3_1:8632531-8632550 | Msa0347530:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 8631342 | 8634311 | 8631342 | ID=Msa0347530;Name=Msa0347530 |
| chr3_1 | mRNA | 8631342 | 8634311 | 8631342 | ID=Msa0347530-mRNA-1;Parent=Msa0347530;Name=Msa0347530-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|989 |
| chr3_1 | exon | 8631342 | 8634311 | 8631342 | ID=Msa0347530-mRNA-1:exon:2515;Parent=Msa0347530-mRNA-1 |
| chr3_1 | CDS | 8631342 | 8634311 | 8631342 | ID=Msa0347530-mRNA-1:cds;Parent=Msa0347530-mRNA-1 |
| Gene Sequence |
| Protein sequence |
