AlfalfaGEDB | Msa1077990

M. sativa cultivar zhongmu-4 / Msa1077990

KEGG: -
GO: GO:0001708 GO:0003002 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008104 GO:0008150 GO:0008356 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009889 GO:0009956 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032507 GO:0033036 GO:0033365 GO:0034504 GO:0034613 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045165 GO:0045185 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051179 GO:0051235 GO:0051252 GO:0051301 GO:0051457 GO:0051641 GO:0051651 GO:0060255 GO:0065007 GO:0065008 GO:0070727 GO:0072595 GO:0080090 GO:0090610 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF03514.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1077990	PNX98855.1	100.000	130	0	0	204	333	534	663	5.78e-86	282
Msa1077990	PNX98855.1	50.909	220	51	8	1	163	1	220	3.46e-29	129

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1077990	sp\|Q9AVK4\|SCR_PEA	96.923	130	4	0	204	333	690	819	1.58e-86	280
Msa1077990	sp\|Q9AVK4\|SCR_PEA	73.626	91	16	5	92	175	296	385	1.46e-25	110
Msa1077990	sp\|Q9AVK4\|SCR_PEA	71.429	49	14	0	1	49	164	212	2.77e-11	68.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1077990	A0A2K3N728	100.000	130	0	0	204	333	534	663	2.76e-86	282
Msa1077990	A0A2K3N728	50.909	220	51	8	1	163	1	220	1.65e-29	129

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TFs/TRs:

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Gene ID	Type	Classification
Msa1077990	TF	GRAS

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002580	Msa1077990	0.817260	3.616795e-52	-8.615850e-47
Msa0005890	Msa1077990	0.828591	8.258056e-55	-8.615850e-47
Msa0017670	Msa1077990	0.823805	1.136837e-53	-8.615850e-47
Msa0025160	Msa1077990	0.804519	2.077871e-49	-8.615850e-47
Msa0032460	Msa1077990	0.855437	6.311235e-62	-8.615850e-47
Msa0034120	Msa1077990	0.801099	1.056330e-48	-8.615850e-47
Msa0035270	Msa1077990	0.803651	3.148506e-49	-8.615850e-47
Msa0035340	Msa1077990	0.830650	2.605961e-55	-8.615850e-47
Msa0035380	Msa1077990	0.800885	1.168193e-48	-8.615850e-47
Msa0042640	Msa1077990	0.809744	1.626299e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1077990	MtrunA17_Chr7g0245601	99.231	130	1	0	204	333	676	805	4.01e-89	283
Msa1077990	MtrunA17_Chr7g0245601	68.349	218	23	5	1	175	159	373	4.42e-80	259
Msa1077990	MtrunA17_Chr4g0038761	68.644	118	37	0	204	321	326	443	1.04e-51	177
Msa1077990	MtrunA17_Chr1g0183641	50.000	118	57	2	204	319	359	476	8.30e-32	124
Msa1077990	MtrunA17_Chr7g0224271	45.763	118	63	1	204	320	556	673	7.71e-30	120
Msa1077990	MtrunA17_Chr2g0306641	42.149	121	60	3	204	320	373	487	3.01e-21	94.4
Msa1077990	MtrunA17_Chr8g0357601	38.136	118	70	2	204	320	437	552	1.34e-18	86.7
Msa1077990	MtrunA17_Chr5g0396491	36.441	118	74	1	204	320	361	478	1.11e-17	83.6
Msa1077990	MtrunA17_Chr2g0319091	40.171	117	68	2	204	319	463	578	2.16e-17	83.2
Msa1077990	MtrunA17_Chr1g0159461	36.441	118	73	2	204	320	476	592	2.86e-17	82.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1077990	AT3G54220.1	88.983	118	13	0	204	321	534	651	2.38e-70	231
Msa1077990	AT5G41920.1	63.636	121	39	2	204	323	288	404	4.21e-43	153
Msa1077990	AT3G03450.1	40.984	122	63	4	204	320	428	545	1.89e-19	89.7
Msa1077990	AT1G14920.1	39.344	122	63	4	204	320	414	529	1.23e-17	84.0
Msa1077990	AT1G66350.1	39.496	119	66	4	204	320	392	506	2.34e-17	83.2
Msa1077990	AT5G17490.1	39.344	122	65	4	204	320	399	516	3.95e-16	79.7
Msa1077990	AT1G55580.1	36.975	119	73	2	204	320	327	445	1.48e-15	77.8
Msa1077990	AT2G01570.1	38.525	122	64	4	204	320	466	581	3.24e-15	77.0
Msa1077990	AT5G66770.1	38.525	122	63	5	207	320	467	584	5.20e-15	76.3
Msa1077990	AT1G50600.2	36.441	118	73	2	204	320	485	601	1.04e-14	75.5

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Find 58 sgRNAs with CRISPR-Local

Find 145 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACCACAAATATTAGGAACA+TGG	0.615138	7_2:-76849811	None:intergenic
AACCATGTTCCTAATATTTG+TGG	0.381285	7_2:+76849809	Msa1077990:CDS
ACACAAGCTAGTCTTCTTCT+TGG	0.369111	7_2:+76852281	Msa1077990:CDS
ACAGTTACTGTTTCTGTTGC+TGG	0.272831	7_2:-76849879	None:intergenic
ACATTGTTGGTATGAAAGGG+AGG	0.648110	7_2:-76852401	None:intergenic
ACCAAAGTATACCCTTCAGA+AGG	0.543263	7_2:-76852311	None:intergenic
ACGGTTCATGAGTTTCACTG+AGG	0.765117	7_2:-76850224	None:intergenic
AGAGAAAAGCTTCAACAGTG+TGG	0.663978	7_2:+76852224	Msa1077990:CDS
AGAGAGTGAAGAGAGACATG+TGG	0.579883	7_2:+76852112	Msa1077990:CDS
AGAGCAAGGTTTGGATTACA+AGG	0.541984	7_2:-76850073	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGTTGAAAATGAGTGTAGTT+TGG	-	chr7_2:76849770-76849789	None:intergenic	30.0%
AACCATGTTCCTAATATTTG+TGG	+	chr7_2:76849809-76849828	Msa1077990:CDS	30.0%
AACCACAAATATTAGGAACA+TGG	-	chr7_2:76849814-76849833	None:intergenic	30.0%
CCAGAAAAACCACAAATATT+AGG	-	chr7_2:76849821-76849840	None:intergenic	30.0%
AGTAACTGTAACATAAGTTC+TGG	+	chr7_2:76849893-76849912	Msa1077990:CDS	30.0%
CTTGATGAATCAGAAAAATG+AGG	-	chr7_2:76850265-76850284	None:intergenic	30.0%
CAAAACATGTTTCCTAATTG+GGG	+	chr7_2:76850301-76850320	Msa1077990:CDS	30.0%
CAATAACAACAATAACCCTT+TGG	+	chr7_2:76850336-76850355	Msa1077990:CDS	30.0%
CATTCTCTATATGATGTTAC+TGG	-	chr7_2:76850813-76850832	None:intergenic	30.0%
ATATCATGCAAGGTTTACAA+TGG	-	chr7_2:76851070-76851089	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_2	gene	76849713	76852442	76849713	ID=Msa1077990;Name=Msa1077990
chr7_2	mRNA	76849713	76852442	76849713	ID=Msa1077990-mRNA-1;Parent=Msa1077990;Name=Msa1077990-mRNA-1;_AED=0.18;_eAED=0.25;_QI=0\|0\|0\|0.8\|0\|0\|5\|0\|333
chr7_2	exon	76849713	76849914	76849713	ID=Msa1077990-mRNA-1:exon:18710;Parent=Msa1077990-mRNA-1
chr7_2	exon	76850027	76850096	76850027	ID=Msa1077990-mRNA-1:exon:18711;Parent=Msa1077990-mRNA-1
chr7_2	exon	76850111	76850357	76850111	ID=Msa1077990-mRNA-1:exon:18712;Parent=Msa1077990-mRNA-1
chr7_2	exon	76851336	76851424	76851336	ID=Msa1077990-mRNA-1:exon:18713;Parent=Msa1077990-mRNA-1
chr7_2	exon	76852049	76852442	76852049	ID=Msa1077990-mRNA-1:exon:18714;Parent=Msa1077990-mRNA-1
chr7_2	CDS	76849713	76849914	76849713	ID=Msa1077990-mRNA-1:cds;Parent=Msa1077990-mRNA-1
chr7_2	CDS	76850027	76850096	76850027	ID=Msa1077990-mRNA-1:cds;Parent=Msa1077990-mRNA-1
chr7_2	CDS	76850111	76850357	76850111	ID=Msa1077990-mRNA-1:cds;Parent=Msa1077990-mRNA-1
chr7_2	CDS	76851336	76851424	76851336	ID=Msa1077990-mRNA-1:cds;Parent=Msa1077990-mRNA-1
chr7_2	CDS	76852049	76852442	76852049	ID=Msa1077990-mRNA-1:cds;Parent=Msa1077990-mRNA-1

Gene Sequence

>Msa1077990

ATGTTGCTACCTTCTTCTTCCAACAATCTCAACAATTCCTCAAACTCCAATGCTCCAAACTACACTCATTTTCAACAACCACTTGTTGAGGAACAAAACCATGTTCCTAATATTTGTGGTTTTTCTGGTTTACCACTTTTTCCATCTCAAAACCAACCCAACAGAACCAGCAACAGAAACAGTAACTGTAACATAAGTTCTGTGTTTCCATTCCTCAACTCATCAACAATGTTAGAGAGATTATATATCCTTGTAATCCAAACCTTGCTCTTGTTACGTCTTCTTACAGAAACTGCTCCAAGTGTTGTTCCTGAGAGAAAAAGAAACAACACTGAACAACAAAGTGTTGCTAATGTTAATGTTTTACCTGCTTCTAATGTTAATTCCTCAGTGAAACTCATGAACCGTGTTGATGACATTGTTCCTCATTTTTCTGATTCATCAAGTCTTTTGAATCAAAATCAAAACATGTTTCCTAATTGGGGTGTGCCACAAATCAATAACAACAATAACCCTTTGGCGTCGAAAGCTGCGAAATTTCGAGTAACATCTTGTTTGCTTGTTCAAGATTCTCTGCTGATACAGCTTCTGCACATTGAAGAAGTAATGTTTGTGGAAGCAATACATTACTACTCAGCATTATTTGATTCTCTTGGTTCAAGCTATGGAGAAGAGAGTGAAGAGAGACATGTGGTGGAGCAGCAACTATTATCAAGAGAGATTCGTAACGTTCTTGCAGTTGGTGGACCATCAAGGAGTGGTGAGATAAAGTTTCATAATTGGAGAGAAAAGCTTCAACAGTGTGGTTTTAGAGGTATCTCTTTGGCTGGTAATGCTGCTACACAAGCTAGTCTTCTTCTTGGCATGTTCCCTTCTGAAGGGTATACTTTGGTTGAGGATAATGGTATCCTTAAACTTGGTTGGAAAGATCTTTGTTTGCTTACTGCTTCTGCTTGGAGACCTCCCTTTCATACCAACAATGTCATACCACATCATAACTGA

Protein sequence

>Msa1077990

MLLPSSSNNLNNSSNSNAPNYTHFQQPLVEEQNHVPNICGFSGLPLFPSQNQPNRTSNRNSNCNISSVFPFLNSSTMLERLYILVIQTLLLLRLLTETAPSVVPERKRNNTEQQSVANVNVLPASNVNSSVKLMNRVDDIVPHFSDSSSLLNQNQNMFPNWGVPQINNNNNPLASKAAKFRVTSCLLVQDSLLIQLLHIEEVMFVEAIHYYSALFDSLGSSYGEESEERHVVEQQLLSREIRNVLAVGGPSRSGEIKFHNWREKLQQCGFRGISLAGNAATQASLLLGMFPSEGYTLVEDNGILKLGWKDLCLLTASAWRPPFHTNNVIPHHN*