AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0492840


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0492840 MtrunA17_Chr3g0087541 73.684 532 119 5 12 525 368 896 0.0 745
Msa0492840 MtrunA17_Chr3g0085451 73.258 531 116 5 12 524 340 862 0.0 743
Msa0492840 MtrunA17_Chr3g0085331 73.048 538 114 8 12 526 368 897 0.0 742
Msa0492840 MtrunA17_Chr3g0085561 72.491 538 123 8 12 526 337 872 0.0 735
Msa0492840 MtrunA17_Chr3g0085561 43.269 104 58 1 421 524 861 963 1.19e-12 70.9
Msa0492840 MtrunA17_Chr3g0085501 70.205 537 126 8 12 525 368 893 0.0 707
Msa0492840 MtrunA17_Chr3g0087731 70.588 527 108 7 12 524 161 654 0.0 706
Msa0492840 MtrunA17_Chr3g0085801 70.888 529 97 6 12 524 370 857 0.0 704
Msa0492840 MtrunA17_Chr3g0085471 70.455 528 126 9 12 524 368 880 0.0 696
Msa0492840 MtrunA17_Chr3g0085471 46.226 106 53 1 421 526 913 1014 4.28e-12 69.3
Msa0492840 MtrunA17_Chr3g0085431 66.792 530 116 5 13 524 2 489 0.0 657
Msa0492840 MtrunA17_Chr3g0087701 65.913 531 159 7 12 525 351 876 0.0 639
Msa0492840 MtrunA17_Chr3g0086221 65.038 532 163 9 12 525 348 874 0.0 631
Msa0492840 MtrunA17_Chr3g0087581 63.636 528 172 6 12 524 352 874 0.0 627
Msa0492840 MtrunA17_Chr3g0086091 63.842 531 169 9 12 524 160 685 0.0 616
Msa0492840 MtrunA17_Chr3g0086181 63.258 528 175 8 12 525 349 871 0.0 616
Msa0492840 MtrunA17_Chr3g0086151 62.712 531 174 8 12 525 349 872 0.0 615
Msa0492840 MtrunA17_Chr3g0086621 62.970 532 169 7 12 524 349 871 0.0 610
Msa0492840 MtrunA17_Chr3g0086161 62.477 533 172 10 12 524 349 873 0.0 610
Msa0492840 MtrunA17_Chr3g0085521 62.687 536 172 9 12 525 344 873 0.0 602
Msa0492840 MtrunA17_Chr3g0084081 61.905 525 182 7 12 525 367 884 0.0 598
Msa0492840 MtrunA17_Chr3g0091011 61.754 536 175 10 12 524 331 859 0.0 594
Msa0492840 MtrunA17_Chr3g0085651 60.600 533 181 9 12 525 358 880 0.0 589
Msa0492840 MtrunA17_Chr3g0085651 45.192 104 53 1 421 524 1006 1105 2.90e-14 76.3
Msa0492840 MtrunA17_Chr3g0085651 41.346 104 58 1 421 524 915 1015 1.09e-11 67.8
Msa0492840 MtrunA17_Chr3g0085751 60.561 535 184 8 12 524 346 875 0.0 585
Msa0492840 MtrunA17_Chr3g0082791 60.837 526 180 8 12 524 369 881 0.0 583
Msa0492840 MtrunA17_Chr3g0085161 61.381 536 177 10 12 524 213 741 0.0 583
Msa0492840 MtrunA17_Chr3g0085551 59.619 525 190 7 12 519 243 762 0.0 573
Msa0492840 MtrunA17_Chr3g0084051 58.712 528 191 8 12 525 367 881 0.0 568
Msa0492840 MtrunA17_Chr7g0221481 61.386 505 160 8 12 489 353 849 0.0 566
Msa0492840 MtrunA17_Chr3g0086071 62.325 499 164 9 44 525 1 492 0.0 564
Msa0492840 MtrunA17_Chr3g0085111 58.912 533 194 8 12 524 349 876 0.0 562
Msa0492840 MtrunA17_Chr3g0085131 58.131 535 187 9 12 524 350 869 0.0 557
Msa0492840 MtrunA17_Chr3g0085091 59.813 535 188 8 12 524 354 883 0.0 557
Msa0492840 MtrunA17_Chr3g0084031 57.495 527 202 8 12 524 369 887 0.0 555
Msa0492840 MtrunA17_Chr3g0086741 61.024 508 167 10 12 497 376 874 0.0 546
Msa0492840 MtrunA17_Chr3g0085171 58.550 538 193 10 12 524 336 868 4.07e-180 537
Msa0492840 MtrunA17_Chr3g0084061 57.356 537 197 10 12 524 358 886 9.45e-172 516
Msa0492840 MtrunA17_Chr3g0085711 60.398 452 152 8 95 524 1 447 1.73e-155 461
Msa0492840 MtrunA17_Chr8g0352861 46.369 537 258 12 12 524 373 903 1.65e-131 412
Msa0492840 MtrunA17_Chr1g0169901 43.389 537 272 11 12 524 359 887 1.56e-118 375
Msa0492840 MtrunA17_Chr8g0352831 45.539 538 262 13 12 525 377 907 9.77e-118 375
Msa0492840 MtrunA17_Chr2g0309721 43.068 541 269 14 12 526 368 895 3.21e-117 374
Msa0492840 MtrunA17_Chr3g0089211 43.253 541 270 13 12 526 415 944 3.16e-116 372
Msa0492840 MtrunA17_Chr3g0082131 42.125 546 275 13 12 525 366 902 5.65e-116 370
Msa0492840 MtrunA17_Chr3g0089251 42.989 542 271 13 12 526 397 927 6.05e-115 370
Msa0492840 MtrunA17_Chr3g0089651 42.541 543 272 13 12 526 372 902 9.49e-115 368
Msa0492840 MtrunA17_Chr3g0089781 42.726 543 271 14 12 526 368 898 2.11e-114 362
Msa0492840 MtrunA17_Chr8g0348931 42.329 541 275 12 12 526 375 904 4.00e-114 365
Msa0492840 MtrunA17_Chr3g0089541 41.852 540 279 11 12 526 372 901 7.14e-114 365
Msa0492840 MtrunA17_Chr3g0090651 42.329 541 275 14 12 526 368 897 1.04e-113 360
Msa0492840 MtrunA17_Chr3g0089871 42.230 547 271 14 12 526 367 900 1.60e-112 362
Msa0492840 MtrunA17_Chr3g0091081 42.672 539 273 14 12 526 368 894 4.64e-112 360
Msa0492840 MtrunA17_Chr3g0089601 41.513 542 279 13 12 526 366 896 6.86e-112 353
Msa0492840 MtrunA17_Chr3g0089991 41.621 543 277 13 12 526 372 902 8.85e-112 360
Msa0492840 MtrunA17_Chr1g0164581 41.758 546 277 13 12 525 342 878 1.35e-111 358
Msa0492840 MtrunA17_Chr3g0091061 41.959 541 277 13 12 526 368 897 2.08e-111 358
Msa0492840 MtrunA17_Chr4g0025391 41.805 543 281 12 9 526 364 896 2.42e-111 358
Msa0492840 MtrunA17_Chr3g0090431 41.187 539 284 12 12 526 240 769 4.73e-111 354
Msa0492840 MtrunA17_Chr3g0090691 42.884 541 271 15 12 526 368 896 6.04e-111 357
Msa0492840 MtrunA17_Chr3g0092241 41.176 544 278 15 12 526 368 898 2.61e-110 353
Msa0492840 MtrunA17_Chr3g0091121 41.765 510 263 11 39 524 7 506 2.86e-110 343
Msa0492840 MtrunA17_Chr3g0084971 40.789 532 291 9 12 524 357 883 1.80e-109 353
Msa0492840 MtrunA17_Chr3g0089811 41.405 541 281 12 12 526 368 898 6.96e-109 352
Msa0492840 MtrunA17_Chr3g0113781 41.088 533 285 12 12 525 146 668 7.55e-109 341
Msa0492840 MtrunA17_Chr3g0089961 40.801 549 282 15 12 529 368 904 2.14e-108 344
Msa0492840 MtrunA17_Chr3g0087841 40.782 537 285 13 12 524 368 895 1.39e-107 347
Msa0492840 MtrunA17_Chr3g0089761 40.296 541 286 12 12 526 368 897 2.10e-107 348
Msa0492840 MtrunA17_Chr3g0092261 39.779 543 287 13 12 526 412 942 1.18e-106 347
Msa0492840 MtrunA17_Chr3g0089421 40.993 544 282 13 12 526 367 900 4.49e-106 344
Msa0492840 MtrunA17_Chr3g0113791 41.386 534 284 13 12 526 351 874 5.32e-106 342
Msa0492840 MtrunA17_Chr2g0299121 41.284 545 281 16 9 524 364 898 8.29e-106 340
Msa0492840 MtrunA17_Chr3g0089501 41.860 516 262 13 12 500 366 870 2.10e-105 335
Msa0492840 MtrunA17_Chr6g0484551 40.943 530 277 12 12 516 342 860 7.00e-105 333
Msa0492840 MtrunA17_Chr7g0248531 40.111 541 289 13 9 524 352 882 3.39e-104 333
Msa0492840 MtrunA17_Chr3g0090371 40.149 538 290 12 12 526 368 896 7.69e-104 338
Msa0492840 MtrunA17_Chr3g0090141 40.074 539 290 13 12 526 368 897 5.38e-103 336
Msa0492840 MtrunA17_Chr2g0299091 41.144 542 286 15 9 524 338 872 1.61e-101 328
Msa0492840 MtrunA17_Chr1g0164391 39.640 555 280 18 12 526 368 907 5.03e-101 330
Msa0492840 MtrunA17_Chr2g0282991 39.739 536 288 13 12 524 365 888 5.39e-101 330
Msa0492840 MtrunA17_Chr1g0164611 41.011 534 274 14 12 513 371 895 6.86e-101 327
Msa0492840 MtrunA17_Chr3g0089591 38.748 591 278 14 12 529 373 952 7.39e-101 330
Msa0492840 MtrunA17_Chr2g0299151 40.325 553 270 19 12 524 351 883 8.87e-101 329
Msa0492840 MtrunA17_Chr3g0090401 40.000 540 269 13 12 526 579 1088 3.99e-100 330
Msa0492840 MtrunA17_Chr3g0089471 38.176 592 281 13 12 529 369 949 4.79e-100 328
Msa0492840 MtrunA17_Chr8g0356251 40.111 541 285 15 12 526 394 921 7.18e-100 327
Msa0492840 MtrunA17_Chr2g0299101 41.235 502 266 13 9 488 364 858 1.24e-99 320
Msa0492840 MtrunA17_Chr3g0082311 39.852 542 291 17 9 526 365 895 1.66e-98 322
Msa0492840 MtrunA17_Chr3g0082351 39.633 545 284 16 12 526 366 895 1.75e-98 321
Msa0492840 MtrunA17_Chr3g0083621 39.630 540 285 15 13 525 380 905 1.87e-98 323
Msa0492840 MtrunA17_Chr1g0164631 40.693 548 272 15 12 524 375 904 5.72e-97 315
Msa0492840 MtrunA17_Chr5g0446611 40.430 512 273 14 12 500 368 870 3.59e-96 311
Msa0492840 MtrunA17_Chr3g0082321 39.264 489 258 14 9 478 311 779 1.96e-94 304
Msa0492840 MtrunA17_Chr1g0147141 41.296 540 275 14 12 524 370 894 5.46e-94 308
Msa0492840 MtrunA17_Chr3g0082101 39.695 524 243 13 12 513 371 843 2.51e-93 305
Msa0492840 MtrunA17_Chr3g0083721 38.734 537 292 16 12 523 311 835 4.81e-93 304
Msa0492840 MtrunA17_Chr3g0083751 38.704 540 294 16 12 525 373 901 6.08e-93 308
Msa0492840 MtrunA17_Chr3g0083591 39.122 524 279 14 12 509 333 842 4.10e-90 300
Msa0492840 MtrunA17_Chr3g0083641 38.403 526 282 15 12 509 344 855 4.76e-90 300
Msa0492840 MtrunA17_Chr3g0082371 38.730 488 247 14 22 500 2 446 4.86e-89 282
Msa0492840 MtrunA17_Chr3g0082391 40.220 455 247 9 12 451 368 812 2.31e-88 289
Msa0492840 MtrunA17_Chr1g0168901 38.007 542 295 16 11 526 339 865 1.16e-87 289
Msa0492840 MtrunA17_Chr3g0085481 65.919 223 64 4 312 526 1 219 1.51e-87 275
Msa0492840 MtrunA17_Chr3g0080871 39.259 540 289 17 12 524 353 880 2.88e-86 289
Msa0492840 MtrunA17_Chr6g0467961 35.970 531 304 12 12 527 349 858 4.74e-86 283
Msa0492840 MtrunA17_Chr5g0415551 39.014 487 260 12 12 482 232 697 1.85e-85 279
Msa0492840 MtrunA17_Chr3g0083681 38.941 529 276 18 9 509 345 854 2.06e-85 287
Msa0492840 MtrunA17_Chr3g0123111 37.148 533 297 13 12 527 351 862 3.22e-85 286
Msa0492840 MtrunA17_Chr6g0468451 36.210 533 304 14 12 527 350 863 7.14e-83 279
Msa0492840 MtrunA17_Chr3g0113481 40.141 426 238 9 12 428 351 768 2.01e-81 269
Msa0492840 MtrunA17_Chr3g0084811 37.546 538 292 16 12 521 519 1040 2.56e-81 275
Msa0492840 MtrunA17_Chr4g0020501 36.484 529 237 10 12 526 320 763 4.19e-81 271
Msa0492840 MtrunA17_Chr4g0008461 36.617 538 306 14 12 524 349 876 7.76e-80 271
Msa0492840 MtrunA17_Chr3g0085931 35.405 531 311 12 12 527 352 865 1.77e-79 270
Msa0492840 MtrunA17_Chr6g0468121 35.038 528 315 11 12 527 350 861 1.99e-78 266
Msa0492840 MtrunA17_Chr6g0468101 34.701 536 274 14 9 527 348 824 3.07e-78 266
Msa0492840 MtrunA17_Chr6g0470081 35.970 531 304 15 12 524 352 864 1.51e-77 264
Msa0492840 MtrunA17_Chr5g0414201 35.229 545 299 19 12 530 361 877 3.39e-77 261
Msa0492840 MtrunA17_Chr6g0470011 35.526 532 305 15 12 524 352 864 5.64e-77 263
Msa0492840 MtrunA17_Chr3g0091971 34.823 537 285 15 12 526 331 824 8.16e-77 263
Msa0492840 MtrunA17_Chr6g0468021 36.553 528 305 11 12 527 349 858 3.21e-76 260
Msa0492840 MtrunA17_Chr3g0085701 58.874 231 84 2 305 524 454 684 2.00e-75 256
Msa0492840 MtrunA17_Chr3g0085701 43.439 221 100 5 12 207 350 570 9.80e-36 142
Msa0492840 MtrunA17_Chr6g0470021 34.717 530 311 13 12 524 243 754 2.50e-75 255
Msa0492840 MtrunA17_Chr5g0413811 35.714 532 289 17 12 510 136 647 3.45e-75 251
Msa0492840 MtrunA17_Chr6g0468151 35.094 530 290 15 12 526 357 847 5.72e-75 257
Msa0492840 MtrunA17_Chr7g0244231 37.244 537 288 17 12 526 351 860 7.97e-75 255
Msa0492840 MtrunA17_Chr6g0468271 34.393 535 309 14 12 527 348 859 5.81e-74 254
Msa0492840 MtrunA17_Chr5g0430581 37.196 535 295 15 12 529 350 860 7.61e-74 252
Msa0492840 MtrunA17_Chr1g0155321 35.821 536 295 16 12 524 351 860 2.64e-73 251
Msa0492840 MtrunA17_Chr5g0431051 37.288 531 292 17 12 524 357 864 4.66e-73 250
Msa0492840 MtrunA17_Chr3g0089441 39.372 414 218 11 136 526 1 404 1.13e-72 246
Msa0492840 MtrunA17_Chr5g0430641 36.822 535 292 16 12 526 356 864 2.33e-72 249
Msa0492840 MtrunA17_Chr5g0430141 36.535 531 283 15 12 525 357 850 5.52e-72 248
Msa0492840 MtrunA17_Chr2g0316291 34.124 548 293 16 12 505 366 899 1.28e-71 247
Msa0492840 MtrunA17_Chr5g0429961 36.053 527 296 14 12 522 356 857 8.56e-71 244
Msa0492840 MtrunA17_Chr6g0468361 36.712 444 247 11 57 486 3 426 2.06e-70 232
Msa0492840 MtrunA17_Chr5g0430511 36.364 539 293 16 12 526 357 869 1.22e-69 241
Msa0492840 MtrunA17_Chr5g0415471 34.743 544 309 17 12 532 363 883 1.99e-69 241
Msa0492840 MtrunA17_Chr2g0299141 43.188 345 172 10 9 338 79 414 7.73e-69 227
Msa0492840 MtrunA17_Chr4g0027251 37.079 534 295 15 12 524 356 869 9.29e-69 239
Msa0492840 MtrunA17_Chr5g0414311 34.545 550 324 17 1 532 355 886 1.45e-68 239
Msa0492840 MtrunA17_Chr5g0430291 35.065 539 301 17 12 526 356 869 3.35e-68 237
Msa0492840 MtrunA17_Chr1g0155991 37.106 539 294 17 12 529 353 867 3.97e-68 237
Msa0492840 MtrunA17_Chr5g0430951 36.531 542 283 16 12 524 355 864 4.54e-68 235
Msa0492840 MtrunA17_Chr5g0430621 36.891 534 294 17 12 526 356 865 4.98e-68 236
Msa0492840 MtrunA17_Chr6g0468201 34.091 484 285 11 57 527 3 465 8.37e-68 232
Msa0492840 MtrunA17_Chr5g0417251 34.280 528 314 15 12 522 126 637 1.04e-66 228
Msa0492840 MtrunA17_Chr5g0430441 36.654 532 297 15 12 526 356 864 9.09e-66 230
Msa0492840 MtrunA17_Chr6g0467911 35.909 440 248 12 12 436 352 772 7.35e-65 225
Msa0492840 MtrunA17_Chr6g0470001 35.391 486 279 15 57 524 3 471 9.43e-65 223
Msa0492840 MtrunA17_Chr5g0414181 35.240 542 306 21 12 532 360 877 1.23e-64 226
Msa0492840 MtrunA17_Chr8g0392511 40.282 355 187 9 90 428 1 346 5.99e-63 209
Msa0492840 MtrunA17_Chr3g0089911 43.711 318 155 10 12 318 367 671 2.60e-62 216
Msa0492840 MtrunA17_Chr5g0429951 35.701 535 303 16 12 526 356 869 5.44e-62 219
Msa0492840 MtrunA17_Chr6g0456131 33.454 553 313 19 12 524 352 889 1.38e-61 218
Msa0492840 MtrunA17_Chr1g0189511 46.599 294 96 6 14 299 21 261 4.49e-61 202
Msa0492840 MtrunA17_Chr3g0082811 33.902 469 259 17 12 453 350 794 1.05e-60 214
Msa0492840 MtrunA17_Chr3g0084041 55.670 194 73 4 308 490 1 192 1.87e-59 195
Msa0492840 MtrunA17_Chr5g0430721 33.829 538 306 18 12 526 397 907 2.01e-58 209
Msa0492840 MtrunA17_Chr3g0082891 34.462 502 263 20 12 470 350 828 6.67e-58 206
Msa0492840 MtrunA17_Chr4g0010261 31.810 547 315 19 12 515 353 884 1.01e-57 207
Msa0492840 MtrunA17_Chr5g0410351 31.657 537 291 17 13 509 333 833 1.08e-57 207
Msa0492840 MtrunA17_Chr3g0082881 33.004 506 261 18 7 461 345 823 1.38e-56 203
Msa0492840 MtrunA17_Chr4g0010201 32.299 548 309 22 12 515 353 882 1.43e-56 204
Msa0492840 MtrunA17_Chr4g0010221 30.755 543 323 17 12 515 353 881 1.84e-56 204
Msa0492840 MtrunA17_Chr4g0009781 30.939 543 322 18 12 515 353 881 2.57e-56 203
Msa0492840 MtrunA17_Chr4g0010251 30.769 559 335 19 12 532 353 897 5.75e-56 202
Msa0492840 MtrunA17_Chr3g0091961 36.858 331 182 9 12 330 48 363 5.90e-55 190
Msa0492840 MtrunA17_Chr5g0410301 30.855 538 284 18 13 509 330 820 2.87e-54 197
Msa0492840 MtrunA17_Chr5g0410481 31.042 480 278 12 62 508 356 815 4.04e-50 185
Msa0492840 MtrunA17_Chr5g0410261 30.203 543 280 19 13 509 363 852 7.36e-50 184
Msa0492840 MtrunA17_Chr2g0282891 37.168 339 154 9 12 340 73 362 2.29e-49 174
Msa0492840 MtrunA17_Chr3g0082871 36.415 357 193 12 12 352 350 688 5.08e-49 180
Msa0492840 MtrunA17_Chr8g0338861 31.228 570 326 19 12 529 68 623 2.34e-48 177
Msa0492840 MtrunA17_Chr6g0456121 33.962 477 284 14 12 477 350 806 7.84e-48 178
Msa0492840 MtrunA17_Chr3g0078361 39.925 268 142 7 9 263 180 441 4.68e-47 170
Msa0492840 MtrunA17_Chr5g0415481 32.059 471 269 13 87 525 3 454 1.03e-46 169
Msa0492840 MtrunA17_Chr5g0414301 33.643 431 233 14 109 529 14 401 1.92e-46 171
Msa0492840 MtrunA17_Chr8g0338391 37.748 302 170 8 12 306 360 650 4.14e-46 173
Msa0492840 MtrunA17_Chr8g0338671 37.415 294 171 6 9 295 244 531 8.09e-46 169
Msa0492840 MtrunA17_Chr5g0410161 29.644 533 305 20 13 509 483 981 1.38e-45 172
Msa0492840 MtrunA17_Chr8g0352211 29.895 572 330 20 12 529 1359 1913 1.86e-45 172
Msa0492840 MtrunA17_Chr8g0351811 33.661 407 235 12 136 527 1 387 4.17e-45 168
Msa0492840 MtrunA17_Chr5g0430341 34.977 426 239 13 116 524 2 406 6.25e-45 166
Msa0492840 MtrunA17_Chr3g0087301 32.285 477 259 17 107 529 397 863 9.26e-45 169
Msa0492840 MtrunA17_Chr7g0218941 38.567 293 156 8 12 295 364 641 1.01e-44 169
Msa0492840 MtrunA17_Chr6g0468111 35.650 331 191 9 12 337 193 506 3.59e-44 163
Msa0492840 MtrunA17_Chr6g0471941 37.801 291 166 7 12 295 361 643 3.62e-44 167
Msa0492840 MtrunA17_Chr5g0414161 34.805 385 213 14 165 532 6 369 6.65e-43 157
Msa0492840 MtrunA17_Chr5g0410401 30.354 537 304 19 4 510 205 701 7.21e-43 163
Msa0492840 MtrunA17_Chr8g0355411 37.954 303 156 10 11 297 362 648 9.93e-43 163
Msa0492840 MtrunA17_Chr8g0338621 38.667 300 147 10 12 295 364 642 3.18e-42 160
Msa0492840 MtrunA17_Chr8g0337891 37.241 290 166 8 12 293 361 642 5.41e-41 157
Msa0492840 MtrunA17_Chr7g0248221 37.543 293 165 8 12 297 371 652 1.34e-39 154
Msa0492840 MtrunA17_Chr2g0309151 34.277 318 193 7 12 323 150 457 2.39e-39 149
Msa0492840 MtrunA17_Chr6g0475491 36.426 291 171 8 12 295 365 648 4.41e-39 152
Msa0492840 MtrunA17_Chr1g0169951 34.906 318 191 8 12 323 380 687 6.11e-39 151
Msa0492840 MtrunA17_Chr1g0189551 35.811 296 172 7 9 297 389 673 2.06e-38 150
Msa0492840 MtrunA17_Chr8g0338261 35.473 296 155 7 7 295 358 624 5.49e-38 149
Msa0492840 MtrunA17_Chr3g0089931 49.664 149 69 2 12 156 353 499 7.06e-38 146
Msa0492840 MtrunA17_Chr7g0257201 33.677 291 184 5 12 297 382 668 3.29e-37 146
Msa0492840 MtrunA17_Chr8g0346831 36.082 291 171 9 12 295 363 645 4.96e-37 146
Msa0492840 MtrunA17_Chr8g0338361 36.567 268 152 9 12 269 228 487 1.83e-36 142
Msa0492840 MtrunA17_Chr3g0092291 41.593 226 117 6 95 313 1 218 2.88e-36 139
Msa0492840 MtrunA17_Chr3g0091041 52.778 144 63 2 12 152 353 494 3.97e-36 141
Msa0492840 MtrunA17_Chr3g0112511 30.798 539 296 24 12 526 366 851 4.28e-36 143
Msa0492840 MtrunA17_Chr4g0051651 33.688 282 157 6 12 269 394 669 2.21e-35 140
Msa0492840 MtrunA17_Chr1g0189521 59.459 111 39 1 324 428 5 115 4.35e-35 128
Msa0492840 MtrunA17_Chr5g0404741 30.427 562 310 26 9 526 358 882 6.86e-35 139
Msa0492840 MtrunA17_Chr7g0257221 32.646 291 187 5 12 297 382 668 7.07e-35 139
Msa0492840 MtrunA17_Chr7g0257541 32.986 288 182 7 12 293 381 663 1.49e-34 139
Msa0492840 MtrunA17_Chr5g0433771 29.804 510 294 15 12 510 376 832 2.03e-34 138
Msa0492840 MtrunA17_Chr5g0417301 37.234 282 154 8 12 285 310 576 2.29e-34 136
Msa0492840 MtrunA17_Chr8g0338251 40.625 192 103 5 12 197 349 535 3.75e-34 137
Msa0492840 MtrunA17_Chr4g0071011 35.562 329 180 11 217 532 53 362 8.29e-34 134
Msa0492840 MtrunA17_Chr7g0257191 34.146 287 180 5 12 293 383 665 2.14e-33 135
Msa0492840 MtrunA17_Chr3g0101321 31.878 458 267 20 12 451 367 797 1.60e-32 132
Msa0492840 MtrunA17_Chr4g0037421 29.771 524 302 19 13 506 422 909 2.33e-32 132
Msa0492840 MtrunA17_Chr2g0299001 29.228 544 328 23 12 523 372 890 4.76e-31 128
Msa0492840 MtrunA17_Chr5g0415511 31.579 323 171 10 12 297 361 670 2.19e-30 125
Msa0492840 MtrunA17_Chr7g0219851 30.137 584 296 23 12 523 360 903 1.44e-29 124
Msa0492840 MtrunA17_Chr6g0468331 31.833 311 173 8 12 295 349 647 1.86e-29 123
Msa0492840 MtrunA17_Chr3g0101011 30.444 473 268 21 12 453 389 831 4.76e-29 122
Msa0492840 MtrunA17_Chr3g0100831 28.810 538 323 26 12 523 370 873 1.80e-28 120
Msa0492840 MtrunA17_Chr3g0101391 29.875 559 288 26 9 525 54 550 3.99e-28 118
Msa0492840 MtrunA17_Chr3g0081391 29.038 551 320 28 12 526 376 891 4.51e-28 119
Msa0492840 MtrunA17_Chr3g0089941 42.105 152 73 3 390 526 35 186 1.24e-27 110
Msa0492840 MtrunA17_Chr3g0089431 58.242 91 36 1 12 102 372 460 6.33e-27 113
Msa0492840 MtrunA17_Chr3g0081211 29.291 437 274 17 12 430 375 794 6.65e-27 115
Msa0492840 MtrunA17_Chr7g0255751 44.937 158 80 4 217 371 34 187 1.61e-26 107
Msa0492840 MtrunA17_Chr3g0081341 29.724 471 279 21 12 455 440 885 2.65e-26 114
Msa0492840 MtrunA17_Chr1g0151481 29.412 527 313 24 12 508 378 875 2.75e-26 113
Msa0492840 MtrunA17_Chr5g0410021 28.801 559 326 26 4 523 347 872 5.09e-26 112
Msa0492840 MtrunA17_Chr3g0101251 27.726 541 312 23 13 525 340 829 9.21e-26 112
Msa0492840 MtrunA17_Chr3g0100731 28.913 543 331 24 12 529 130 642 3.92e-25 109
Msa0492840 MtrunA17_Chr5g0414231 41.135 141 75 3 12 146 361 499 7.79e-25 107
Msa0492840 MtrunA17_Chr5g0409991 28.571 553 335 23 4 523 345 870 9.62e-25 108
Msa0492840 MtrunA17_Chr3g0081361 29.213 445 265 18 12 430 381 801 9.95e-25 108
Msa0492840 MtrunA17_Chr3g0100961 26.692 532 319 20 12 524 375 854 1.27e-24 108
Msa0492840 MtrunA17_Chr3g0081191 30.201 447 257 20 12 430 372 791 2.14e-24 107
Msa0492840 MtrunA17_Chr8g0338681 44.762 105 57 1 12 116 140 243 4.85e-24 100
Msa0492840 MtrunA17_Chr3g0080741 27.072 543 347 22 7 523 372 891 8.23e-24 105
Msa0492840 MtrunA17_Chr3g0100681 28.780 410 253 16 12 405 188 574 1.63e-23 104
Msa0492840 MtrunA17_Chr3g0080751 26.545 550 330 25 12 523 377 890 1.82e-23 105
Msa0492840 MtrunA17_Chr3g0101231 28.312 551 320 26 12 524 382 895 3.82e-23 103
Msa0492840 MtrunA17_Chr4g0071021 53.933 89 40 1 12 100 339 426 4.18e-23 102
Msa0492840 MtrunA17_Chr3g0100851 27.002 437 274 19 12 430 251 660 4.24e-23 103
Msa0492840 MtrunA17_Chr3g0078351 43.448 145 72 3 390 524 30 174 4.65e-23 101
Msa0492840 MtrunA17_Chr1g0189351 27.872 531 302 19 12 508 372 855 6.14e-23 103
Msa0492840 MtrunA17_Chr5g0414171 42.222 135 70 3 12 140 288 420 8.55e-23 100
Msa0492840 MtrunA17_Chr3g0080721 29.423 537 311 27 3 500 107 614 8.99e-23 102
Msa0492840 MtrunA17_Chr3g0080771 27.828 442 273 18 12 430 377 795 9.06e-23 102
Msa0492840 MtrunA17_Chr5g0409971 28.962 549 338 24 4 523 350 875 1.08e-22 102
Msa0492840 MtrunA17_Chr3g0101181 27.505 549 315 24 12 526 383 882 1.09e-22 102
Msa0492840 MtrunA17_Chr3g0080731 27.455 448 268 19 12 430 377 796 1.44e-22 102
Msa0492840 MtrunA17_Chr3g0080601 28.146 437 255 19 12 417 376 784 1.53e-22 102
Msa0492840 MtrunA17_Chr1g0169941 32.386 176 114 2 12 183 142 316 1.55e-22 99.0
Msa0492840 MtrunA17_Chr5g0410001 27.387 555 341 27 3 524 349 874 1.63e-22 102
Msa0492840 MtrunA17_Chr3g0080791 27.578 446 275 18 9 430 374 795 1.89e-22 101
Msa0492840 MtrunA17_Chr3g0101241 27.881 538 308 25 12 525 352 833 2.08e-22 101
Msa0492840 MtrunA17_Chr3g0101271 28.067 538 326 25 12 524 352 853 2.14e-22 101
Msa0492840 MtrunA17_Chr3g0089921 41.447 152 72 4 394 529 2 152 2.86e-22 100
Msa0492840 MtrunA17_Chr3g0101331 27.174 552 314 18 12 525 377 878 2.99e-22 101
Msa0492840 MtrunA17_Chr6g0468341 34.199 231 134 7 310 527 447 672 5.31e-22 100
Msa0492840 MtrunA17_Chr6g0468341 40.625 128 74 2 12 139 351 476 9.10e-21 96.7
Msa0492840 MtrunA17_Chr3g0100971 28.421 380 238 15 12 375 372 733 6.33e-22 99.8
Msa0492840 MtrunA17_Chr3g0100761 28.421 380 238 15 12 375 332 693 1.98e-21 98.2
Msa0492840 MtrunA17_Chr2g0308491 58.333 72 30 0 12 83 187 258 2.82e-21 93.6
Msa0492840 MtrunA17_Chr3g0081181 28.442 552 321 25 12 526 361 875 3.37e-21 97.8
Msa0492840 MtrunA17_Chr3g0081371 30.508 472 275 22 12 455 381 827 4.62e-21 97.4
Msa0492840 MtrunA17_Chr6g0468381 33.473 239 141 7 302 527 47 280 4.64e-21 97.1
Msa0492840 MtrunA17_Chr6g0468381 24.803 508 285 20 57 524 3 453 1.80e-12 69.7
Msa0492840 MtrunA17_Chr3g0101201 27.440 543 333 25 12 524 376 887 1.32e-20 95.9
Msa0492840 MtrunA17_Chr7g0248431 39.716 141 81 2 12 148 371 511 1.34e-20 95.5
Msa0492840 MtrunA17_Chr3g0094301 27.891 441 275 17 12 430 377 796 1.34e-20 95.9
Msa0492840 MtrunA17_Chr7g0229761 27.891 441 275 17 12 430 377 796 1.34e-20 95.9
Msa0492840 MtrunA17_Chr3g0080651 27.083 384 241 11 12 372 295 662 3.58e-20 94.7
Msa0492840 MtrunA17_Chr3g0101221 27.664 535 322 24 12 524 378 869 4.30e-20 94.4
Msa0492840 MtrunA17_Chr3g0100801 27.174 460 262 18 12 451 339 745 6.51e-20 93.6
Msa0492840 MtrunA17_Chr5g0430901 39.234 209 110 8 329 526 544 746 1.55e-19 92.4
Msa0492840 MtrunA17_Chr8g0351821 46.392 97 51 1 12 108 352 447 3.44e-19 90.5
Msa0492840 MtrunA17_Chr6g0468251 31.604 212 136 5 322 526 4 213 3.79e-19 90.1
Msa0492840 MtrunA17_Chr8g0355071 38.333 120 73 1 9 127 174 293 3.92e-19 88.2
Msa0492840 MtrunA17_Chr7g0257251 37.288 118 72 1 12 127 48 165 8.35e-19 84.3
Msa0492840 MtrunA17_Chr5g0417291 32.653 196 109 6 308 492 1 184 3.27e-17 80.1
Msa0492840 MtrunA17_Chr2g0308481 39.583 144 84 2 136 277 1 143 5.54e-17 78.2
Msa0492840 MtrunA17_Chr7g0257551 38.462 104 64 0 12 115 305 408 8.62e-17 82.8
Msa0492840 MtrunA17_Chr5g0410031 25.874 572 332 25 3 524 350 879 1.18e-16 83.6
Msa0492840 MtrunA17_Chr8g0338431 33.632 223 131 8 93 307 1 214 6.13e-16 80.5
Msa0492840 MtrunA17_Chr6g0478721 22.776 562 354 19 12 531 261 784 9.13e-16 80.5
Msa0492840 MtrunA17_Chr3g0104421 39.216 102 58 3 27 127 1 99 8.98e-15 70.5
Msa0492840 MtrunA17_Chr3g0080631 28.419 468 283 24 81 523 404 844 1.04e-14 77.4
Msa0492840 MtrunA17_Chr4g0020411 55.224 67 29 1 12 78 84 149 1.56e-14 71.2
Msa0492840 MtrunA17_Chr5g0430331 46.341 82 41 1 12 93 352 430 1.56e-14 75.9
Msa0492840 MtrunA17_Chr3g0100701 27.632 456 261 22 90 529 286 688 3.04e-14 75.9
Msa0492840 MtrunA17_Chr2g0308471 41.667 108 52 3 428 524 1 108 4.04e-14 69.7
Msa0492840 MtrunA17_Chr4g0048421 22.694 542 350 17 12 513 343 855 7.27e-14 74.7
Msa0492840 MtrunA17_Chr3g0084351 28.044 271 155 11 12 260 302 554 1.05e-13 73.6
Msa0492840 MtrunA17_Chr5g0414221 32.278 158 93 4 165 322 3 146 1.83e-13 68.2
Msa0492840 MtrunA17_Chr5g0414211 32.843 204 120 9 342 532 2 201 1.35e-12 69.7
Msa0492840 MtrunA17_Chr4g0010491 43.836 73 39 2 12 83 353 424 1.35e-12 69.7
Msa0492840 MtrunA17_Chr3g0101211 35.714 154 87 5 12 155 165 316 1.51e-12 69.3
Msa0492840 MtrunA17_Chr1g0189271 39.785 93 53 2 12 101 212 304 9.24e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0492840 AT3G14470.1 40.917 545 283 13 12 524 369 906 6.39e-116 367
Msa0492840 AT3G14470.2 40.917 545 283 13 12 524 369 906 6.39e-116 367
Msa0492840 AT3G14460.1 37.838 555 300 12 12 530 365 910 4.72e-97 322
Msa0492840 AT1G58602.2 26.518 626 328 21 13 525 364 970 3.00e-28 120
Msa0492840 AT1G58602.1 26.518 626 328 21 13 525 364 970 3.00e-28 120
Msa0492840 AT1G59124.2 27.652 528 338 14 13 518 360 865 3.37e-27 117
Msa0492840 AT1G58807.1 27.652 528 338 14 13 518 360 865 3.37e-27 117
Msa0492840 AT3G07040.1 30.195 308 180 11 4 293 365 655 6.61e-27 115
Msa0492840 AT5G43470.3 26.874 547 337 21 13 526 360 876 5.48e-25 110
Msa0492840 AT5G43470.2 26.874 547 337 21 13 526 360 876 5.48e-25 110
Msa0492840 AT5G43470.4 26.874 547 337 21 13 526 360 876 5.48e-25 110
Msa0492840 AT5G43470.1 26.874 547 337 21 13 526 360 876 5.48e-25 110
Msa0492840 AT1G59218.1 26.134 551 325 20 13 518 360 873 1.89e-24 108
Msa0492840 AT1G59218.2 26.134 551 325 20 13 518 360 873 1.89e-24 108
Msa0492840 AT1G59218.3 26.134 551 325 20 13 518 360 873 1.89e-24 108
Msa0492840 AT1G58848.1 26.134 551 325 20 13 518 360 873 1.89e-24 108
Msa0492840 AT1G58848.2 26.134 551 325 20 13 518 360 873 1.89e-24 108
Msa0492840 AT1G59124.1 27.326 516 330 15 13 505 360 853 1.13e-23 105
Msa0492840 AT1G58807.2 27.326 516 330 15 13 505 360 853 1.13e-23 105
Msa0492840 AT5G35450.2 26.874 547 334 27 13 526 354 867 2.16e-23 105
Msa0492840 AT5G35450.1 26.874 547 334 27 13 526 354 867 2.16e-23 105
Msa0492840 AT1G58390.1 26.497 551 328 22 13 524 360 872 3.35e-23 104
Msa0492840 AT1G58390.2 26.497 551 328 22 13 524 360 872 3.35e-23 104
Msa0492840 AT1G58400.3 29.121 546 321 27 13 523 361 875 5.01e-23 103
Msa0492840 AT1G58400.2 29.121 546 321 27 13 523 361 875 5.01e-23 103
Msa0492840 AT1G58400.1 29.121 546 321 27 13 523 351 865 5.49e-23 103
Msa0492840 AT1G12210.3 32.566 304 181 13 9 295 302 598 1.09e-21 99.8
Msa0492840 AT1G12210.2 32.566 304 181 13 9 295 302 598 1.09e-21 99.8
Msa0492840 AT1G12210.1 32.566 304 181 13 9 295 344 640 1.15e-21 99.8
Msa0492840 AT1G12220.3 31.250 304 185 10 9 295 223 519 2.23e-21 98.6
Msa0492840 AT1G63360.2 26.607 560 303 24 4 513 301 802 2.31e-21 98.6
Msa0492840 AT1G63360.1 26.607 560 303 24 4 513 336 837 2.47e-21 98.6
Msa0492840 AT1G62630.1 26.799 556 309 22 4 513 336 839 3.18e-21 98.2
Msa0492840 AT1G12220.1 31.250 304 185 10 9 295 344 640 3.43e-21 98.2
Msa0492840 AT1G12220.2 31.250 304 185 10 9 295 344 640 3.43e-21 98.2
Msa0492840 AT5G43730.4 32.686 309 183 11 4 295 335 635 6.18e-21 97.4
Msa0492840 AT5G43730.1 32.686 309 183 11 4 295 335 635 6.18e-21 97.4
Msa0492840 AT5G43730.3 32.686 309 183 11 4 295 335 635 6.18e-21 97.4
Msa0492840 AT5G43730.2 32.686 309 183 11 4 295 335 635 6.18e-21 97.4
Msa0492840 AT5G43730.5 32.686 309 183 11 4 295 335 635 6.18e-21 97.4
Msa0492840 AT5G47250.1 29.392 296 188 8 12 291 344 634 6.78e-21 97.4
Msa0492840 AT5G48620.6 26.802 541 341 24 13 524 360 874 1.05e-20 96.7
Msa0492840 AT5G48620.1 26.802 541 341 24 13 524 360 874 1.05e-20 96.7
Msa0492840 AT5G48620.4 26.802 541 341 24 13 524 360 874 1.05e-20 96.7
Msa0492840 AT5G48620.2 26.802 541 341 24 13 524 360 874 1.05e-20 96.7
Msa0492840 AT5G48620.3 26.802 541 341 24 13 524 360 874 1.05e-20 96.7
Msa0492840 AT5G48620.5 26.802 541 341 24 13 524 360 874 1.05e-20 96.7
Msa0492840 AT5G63020.1 30.033 303 186 10 9 295 342 634 1.84e-20 95.9
Msa0492840 AT1G15890.2 30.132 302 189 8 12 297 184 479 3.01e-20 95.1
Msa0492840 AT3G50950.2 28.540 452 280 16 12 442 354 783 3.18e-20 95.1
Msa0492840 AT3G50950.1 28.540 452 280 16 12 442 354 783 3.18e-20 95.1
Msa0492840 AT1G15890.1 30.132 302 189 8 12 297 344 639 3.69e-20 95.1
Msa0492840 AT4G27220.1 28.986 345 167 13 9 326 301 594 1.88e-19 92.8
Msa0492840 AT4G27220.2 28.986 345 167 13 9 326 309 602 1.98e-19 92.8
Msa0492840 AT5G47260.1 26.364 550 346 25 4 532 328 839 3.46e-19 92.0
Msa0492840 AT1G59780.1 24.910 554 344 20 1 523 341 853 9.86e-19 90.5
Msa0492840 AT1G59780.2 24.910 554 344 20 1 523 336 848 1.18e-18 90.5
Msa0492840 AT1G61180.1 27.719 285 183 10 9 277 340 617 1.55e-18 90.1
Msa0492840 AT1G61180.2 25.632 554 322 23 9 523 340 842 1.63e-18 89.7
Msa0492840 AT1G61300.1 28.679 265 166 8 9 257 229 486 2.00e-18 89.4
Msa0492840 AT1G53350.1 26.007 546 342 20 13 524 355 872 3.62e-18 89.0
Msa0492840 AT3G46730.1 29.039 489 243 24 12 462 361 783 5.39e-18 88.2
Msa0492840 AT1G61190.1 25.641 546 334 19 9 526 341 842 5.87e-18 88.2
Msa0492840 AT1G61190.2 25.641 546 334 19 9 526 341 842 6.76e-18 87.8
Msa0492840 AT1G61190.3 25.641 546 334 19 9 526 341 842 6.76e-18 87.8
Msa0492840 AT4G10780.1 29.470 302 188 11 12 295 344 638 1.26e-17 87.0
Msa0492840 AT4G10780.2 29.470 302 188 11 12 295 344 638 1.30e-17 87.0
Msa0492840 AT4G27190.1 28.873 284 172 8 8 282 330 592 1.39e-17 87.0
Msa0492840 AT1G63350.4 25.047 531 294 17 9 510 340 795 1.49e-17 86.7
Msa0492840 AT4G26090.1 26.521 411 255 14 12 405 344 724 1.54e-17 86.7
Msa0492840 AT1G10920.5 27.132 387 243 11 13 377 69 438 2.16e-17 85.9
Msa0492840 AT1G10920.3 27.132 387 243 11 13 377 69 438 2.16e-17 85.9
Msa0492840 AT1G63350.1 25.655 534 323 18 9 510 340 831 2.64e-17 85.9
Msa0492840 AT1G12290.1 30.000 260 158 10 13 253 347 601 2.95e-17 85.9
Msa0492840 AT1G12290.4 30.000 260 158 10 13 253 305 559 2.97e-17 85.9
Msa0492840 AT1G12290.3 30.000 260 158 10 13 253 305 559 2.97e-17 85.9
Msa0492840 AT1G12290.2 30.000 260 158 10 13 253 305 559 2.97e-17 85.9
Msa0492840 AT1G63350.3 25.655 534 323 18 9 510 340 831 3.05e-17 85.9
Msa0492840 AT1G63350.2 25.655 534 323 18 9 510 340 831 3.05e-17 85.9
Msa0492840 AT1G61190.4 25.000 536 325 17 9 526 341 817 6.78e-17 84.7
Msa0492840 AT1G61300.2 27.863 262 147 6 9 257 229 461 7.43e-17 84.3
Msa0492840 AT1G50180.1 27.985 268 165 6 9 248 358 625 1.02e-16 84.3
Msa0492840 AT1G10920.1 27.132 387 243 11 13 377 239 608 1.03e-16 84.0
Msa0492840 AT1G10920.2 27.132 387 243 11 13 377 239 608 1.03e-16 84.0
Msa0492840 AT1G10920.4 27.132 387 243 11 13 377 239 608 1.03e-16 84.0
Msa0492840 AT1G58410.1 27.083 384 231 16 13 368 359 721 1.60e-16 83.6
Msa0492840 AT1G58410.4 27.083 384 231 16 13 368 359 721 1.60e-16 83.6
Msa0492840 AT1G58410.2 27.083 384 231 16 13 368 359 721 1.60e-16 83.6
Msa0492840 AT1G12280.1 28.671 286 165 9 12 272 347 618 1.71e-16 83.6
Msa0492840 AT1G51480.1 30.968 310 188 11 4 295 336 637 2.89e-16 82.8
Msa0492840 AT5G43740.1 29.474 285 179 9 4 272 334 612 1.22e-15 80.9
Msa0492840 AT5G43740.2 29.474 285 179 9 4 272 334 612 1.22e-15 80.9
Msa0492840 AT3G46710.1 28.571 301 178 12 12 293 356 638 1.56e-15 80.5

Find 94 sgRNAs with CRISPR-Local

Find 252 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCTTGTCCCTTAATGTTT+TGG 0.191323 3_4:-16899246 Msa0492840:CDS
AGGTCTTCCAACGTGATATT+TGG 0.196860 3_4:+16900293 None:intergenic
TGACAACCCCTTAGCCAATT+TGG 0.202486 3_4:+16899431 None:intergenic
CCCAATTGTCCAAAACATTA+AGG 0.212373 3_4:+16899237 None:intergenic
ATCATTGGCGAAGAGATTTA+TGG 0.251873 3_4:-16899290 Msa0492840:CDS
AGCCTCTTCAAGTTGCTATT+TGG 0.279611 3_4:+16899485 None:intergenic
AGTCTGAAATAGAAAGCTTT+TGG 0.282377 3_4:+16899327 None:intergenic
ATGACGTAAATTGATGAGTT+TGG 0.300845 3_4:+16899817 None:intergenic
AAATTCTCCTGACACTGATT+TGG 0.307201 3_4:+16900240 None:intergenic
AAGGTAATAGCTTTCCAAAT+TGG 0.330414 3_4:-16899445 Msa0492840:CDS
ACATGAATGGTCTGAGATAT+TGG 0.331821 3_4:-16900572 Msa0492840:CDS
GAGGAGTGGTTGTGTCTTGA+AGG 0.347121 3_4:-16899215 Msa0492840:CDS
TTGAAAGGACGCGTCATATT+CGG 0.348453 3_4:-16900180 Msa0492840:CDS
AGTTTAAGAGATACTAAGTT+AGG 0.360481 3_4:+16899404 None:intergenic
GAATATGACGCGTCCTTTCA+AGG 0.368564 3_4:+16900182 None:intergenic
TAATTTGCAAACACTCTTGC+TGG 0.368835 3_4:-16899879 Msa0492840:CDS
TTAGTATCTCTTAAACTAAA+GGG 0.368948 3_4:-16899398 Msa0492840:CDS
AAAGAAGATGCCAAAGCATA+TGG 0.384120 3_4:-16899756 Msa0492840:CDS
GAATTACATATGAAGTTTGA+TGG 0.394374 3_4:-16899551 Msa0492840:CDS
TGAGGATGTTATCATTTAGA+TGG 0.394768 3_4:-16900012 Msa0492840:CDS
CTTAGTATCTCTTAAACTAA+AGG 0.397498 3_4:-16899399 Msa0492840:CDS
TTTCAAGACTAAAATGTTTG+AGG 0.398243 3_4:-16900030 Msa0492840:CDS
TGTTCTTTGTTGCCACCACT+TGG 0.406339 3_4:-16899365 Msa0492840:CDS
GACAAGATCATGCATGAAAT+AGG 0.417846 3_4:+16900273 None:intergenic
AAGATGGATTGATCAGGCTT+TGG 0.418881 3_4:-16900411 Msa0492840:CDS
TATGAATTGTTCCATGAAGA+TGG 0.419038 3_4:+16899648 None:intergenic
CTCTATGATATTATCACACT+TGG 0.420297 3_4:+16899081 None:intergenic
TAAACTGTCCCAATTTGAAA+AGG 0.425022 3_4:-16899163 Msa0492840:CDS
TACAACATACAAATGCTATC+AGG 0.426716 3_4:+16899902 None:intergenic
AACAATTCATATTGAAGGGT+TGG 0.436307 3_4:-16899636 Msa0492840:CDS
ACAATTCATATTGAAGGGTT+GGG 0.438600 3_4:-16899635 Msa0492840:CDS
AGGAGTGGTTGTGTCTTGAA+GGG 0.443096 3_4:-16899214 Msa0492840:CDS
CCAATTGTCCAAAACATTAA+GGG 0.444512 3_4:+16899238 None:intergenic
CATGGAACAATTCATATTGA+AGG 0.449180 3_4:-16899641 Msa0492840:CDS
GACAAAAGAGAAGAAGAGTT+AGG 0.455156 3_4:-16900355 Msa0492840:CDS
TCTCTTAAACTAAAGGGTTG+TGG 0.466821 3_4:-16899392 Msa0492840:CDS
TGTGATGGAATAAAGATCAT+TGG 0.490067 3_4:-16899305 Msa0492840:CDS
TGGTAACTCAATCTCAGCAC+TGG 0.490305 3_4:+16900505 None:intergenic
GTGTGGTCTCTCAGAGCTAG+TGG 0.500904 3_4:-16899990 Msa0492840:CDS
CTAGTGCCTCTATAATCACT+TGG 0.502424 3_4:+16899785 None:intergenic
ATAGCTTTCCAAATTGGCTA+AGG 0.503160 3_4:-16899439 Msa0492840:CDS
AAACTGTCCCAATTTGAAAA+GGG 0.505405 3_4:-16899162 Msa0492840:CDS
CTTTCTATTTCAGACTGTGA+TGG 0.505538 3_4:-16899320 Msa0492840:CDS
GATTTATCCAAATCAGTGTC+AGG 0.506636 3_4:-16900247 Msa0492840:CDS
TAGCTTTCCAAATTGGCTAA+GGG 0.508759 3_4:-16899438 Msa0492840:CDS
GGCAAAACAACGCTTCCGAT+TGG 0.510103 3_4:+16900471 None:intergenic
ATGGAACAATTCATATTGAA+GGG 0.510908 3_4:-16899640 Msa0492840:CDS
ATTACCTTTGTATTGTGAGA+TGG 0.513262 3_4:+16899460 None:intergenic
AACCAAATAGCAACTTGAAG+AGG 0.515741 3_4:-16899487 Msa0492840:CDS
AGTCCCTTCAGCTCACATAT+TGG 0.517208 3_4:+16900118 None:intergenic
TTTGCCGTCGCAGCATCTGC+AGG 0.518121 3_4:+16899599 None:intergenic
ACCACAATCTCCCTTCCAAT+CGG 0.521663 3_4:-16900486 Msa0492840:CDS
GATATGTGGCAATTATTAGA+CGG 0.524165 3_4:-16900544 Msa0492840:CDS
ATATGTGGCAATTATTAGAC+GGG 0.524901 3_4:-16900543 Msa0492840:CDS
CTTCCACAACAAAATATGAC+AGG 0.525192 3_4:+16899711 None:intergenic
GCAAATAAAGGGTGCTATGG+TGG 0.526205 3_4:-16900212 Msa0492840:CDS
AAACAACGCTTCCGATTGGA+AGG 0.529681 3_4:+16900475 None:intergenic
AAGAAGATGCCAAAGCATAT+GGG 0.531018 3_4:-16899755 Msa0492840:CDS
TGGATCTGATCTTAAAGAGT+TGG 0.533248 3_4:-16899681 Msa0492840:CDS
TAAGCAAATAAAGGGTGCTA+TGG 0.535560 3_4:-16900215 Msa0492840:CDS
TGTAAAGAAGGAAGGTGTTG+AGG 0.538289 3_4:+16899134 None:intergenic
TTCTAATCTCAGTGTATGAA+AGG 0.540446 3_4:+16899930 None:intergenic
TTTGTTGTGGAAGAGCAGAA+TGG 0.542622 3_4:-16899701 Msa0492840:CDS
TGAATGCAATGTATCTGTCT+TGG 0.542902 3_4:-16899519 Msa0492840:CDS
ATCAGGCTTTGGATGGCAGA+AGG 0.544695 3_4:-16900400 Msa0492840:CDS
TGGATTGATCAGGCTTTGGA+TGG 0.545417 3_4:-16900407 Msa0492840:CDS
ATATAAAGCTCTTTAAGCAA+AGG 0.548555 3_4:+16899188 None:intergenic
GAAGGTTTGTTGAAGTGTTG+CGG 0.558939 3_4:-16900382 Msa0492840:CDS
TGGTGGAAGGTAGCCTTGAA+AGG 0.560135 3_4:-16900195 Msa0492840:CDS
ATGCAATGTATCTGTCTTGG+AGG 0.560657 3_4:-16899516 Msa0492840:CDS
GTTCTTTGTTGCCACCACTT+GGG 0.565885 3_4:-16899364 Msa0492840:CDS
ATGTTATCATTTAGATGGTG+TGG 0.566651 3_4:-16900007 Msa0492840:CDS
AGAGCCAATATGTGAGCTGA+AGG 0.568736 3_4:-16900122 Msa0492840:CDS
GAACTCCCAAGTGATTATAG+AGG 0.573559 3_4:-16899791 Msa0492840:CDS
TCCGATTGGAAGGGAGATTG+TGG 0.575810 3_4:+16900485 None:intergenic
AAAACATTAAGGGACAAGAA+AGG 0.578124 3_4:+16899248 None:intergenic
TTGCAAACACTCTTGCTGGA+AGG 0.587971 3_4:-16899875 Msa0492840:CDS
AAGGGGAGCGTCCCAAGTGG+TGG 0.589924 3_4:+16899353 None:intergenic
AGCTTTCCAAATTGGCTAAG+GGG 0.590416 3_4:-16899437 Msa0492840:CDS
TGATCCTGCAGATGCTGCGA+CGG 0.608093 3_4:-16899603 Msa0492840:CDS
ATAAAGGGTGCTATGGTGGA+AGG 0.610533 3_4:-16900208 Msa0492840:CDS
TAGTGCCTCTATAATCACTT+GGG 0.612873 3_4:+16899786 None:intergenic
TCTATGATATTATCACACTT+GGG 0.623184 3_4:+16899082 None:intergenic
GAGCCAATATGTGAGCTGAA+GGG 0.648020 3_4:-16900121 Msa0492840:CDS
GGTAACTCAATCTCAGCACT+GGG 0.650908 3_4:+16900506 None:intergenic
CTTACCATCTCACAATACAA+AGG 0.659744 3_4:-16899464 Msa0492840:CDS
TTCCACAACAAAATATGACA+GGG 0.660098 3_4:+16899712 None:intergenic
GTGTGAACATCAAGTGTGGA+GGG 0.671087 3_4:-16900648 Msa0492840:CDS
AGATATTGGAGACTGATATG+TGG 0.681586 3_4:-16900558 Msa0492840:CDS
AACAACGCTTCCGATTGGAA+GGG 0.687413 3_4:+16900476 None:intergenic
ATGTGTGTGAACATCAAGTG+TGG 0.688825 3_4:-16900652 Msa0492840:CDS
TGTGTGAACATCAAGTGTGG+AGG 0.699564 3_4:-16900649 Msa0492840:CDS
AGAAAGGGGAGCGTCCCAAG+TGG 0.719460 3_4:+16899350 None:intergenic
TATGTGGCAATTATTAGACG+GGG 0.738071 3_4:-16900542 Msa0492840:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTAAATTCATAACCCTT+GGG + chr3_4:16899334-16899353 None:intergenic 20.0%
!!! TTTTTTAAATTCATAACCCT+TGG + chr3_4:16899335-16899354 None:intergenic 20.0%
!! GGTTATGAATTTAAAAAAGA+TGG - chr3_4:16899337-16899356 Msa0492840:CDS 20.0%
!!! AGAATTTTGTAAGCAAATAA+AGG - chr3_4:16899540-16899559 Msa0492840:CDS 20.0%
!!! GAATTTTGTAAGCAAATAAA+GGG - chr3_4:16899541-16899560 Msa0492840:CDS 20.0%
!! TTAGTATCTCTTAAACTAAA+GGG - chr3_4:16900366-16900385 Msa0492840:CDS 20.0%
!!! TTTTTAAATTCATAACCCTT+GGG + chr3_4:16899334-16899353 None:intergenic 20.0%
!!! TTTTTTAAATTCATAACCCT+TGG + chr3_4:16899335-16899354 None:intergenic 20.0%
!! GGTTATGAATTTAAAAAAGA+TGG - chr3_4:16899337-16899356 Msa0492840:CDS 20.0%
!!! AGAATTTTGTAAGCAAATAA+AGG - chr3_4:16899540-16899559 Msa0492840:CDS 20.0%
!!! GAATTTTGTAAGCAAATAAA+GGG - chr3_4:16899541-16899560 Msa0492840:CDS 20.0%
!! TTAGTATCTCTTAAACTAAA+GGG - chr3_4:16900366-16900385 Msa0492840:CDS 20.0%
! CCTTTAGCTATAAAAACATT+GGG - chr3_4:16899142-16899161 Msa0492840:CDS 25.0%
! CTTTAGCTATAAAAACATTG+GGG - chr3_4:16899143-16899162 Msa0492840:CDS 25.0%
!! GAAAATTTTCTCAACATGAA+TGG - chr3_4:16899179-16899198 Msa0492840:CDS 25.0%
!!! TTAAAAAAGATGGATTGATC+AGG - chr3_4:16899347-16899366 Msa0492840:CDS 25.0%
! TTTCAAGACTAAAATGTTTG+AGG - chr3_4:16899734-16899753 Msa0492840:CDS 25.0%
! TGAGTTTGGAAAAATTTGAT+GGG + chr3_4:16899936-16899955 None:intergenic 25.0%
! ATGAGTTTGGAAAAATTTGA+TGG + chr3_4:16899937-16899956 None:intergenic 25.0%
! ATGGAACAATTCATATTGAA+GGG - chr3_4:16900124-16900143 Msa0492840:CDS 25.0%
! GAATTACATATGAAGTTTGA+TGG - chr3_4:16900213-16900232 Msa0492840:CDS 25.0%
! AGTTTAAGAGATACTAAGTT+AGG + chr3_4:16900363-16900382 None:intergenic 25.0%
! CTTAGTATCTCTTAAACTAA+AGG - chr3_4:16900365-16900384 Msa0492840:CDS 25.0%
! ATATAAAGCTCTTTAAGCAA+AGG + chr3_4:16900579-16900598 None:intergenic 25.0%
!! ATCTTCAGTTTTTGTAAAGA+AGG + chr3_4:16900645-16900664 None:intergenic 25.0%
! TTACAAAAACTGAAGATTAG+TGG - chr3_4:16900648-16900667 Msa0492840:CDS 25.0%
! CCTTTAGCTATAAAAACATT+GGG - chr3_4:16899142-16899161 Msa0492840:CDS 25.0%
! CTTTAGCTATAAAAACATTG+GGG - chr3_4:16899143-16899162 Msa0492840:CDS 25.0%
!! GAAAATTTTCTCAACATGAA+TGG - chr3_4:16899179-16899198 Msa0492840:CDS 25.0%
!!! TTAAAAAAGATGGATTGATC+AGG - chr3_4:16899347-16899366 Msa0492840:CDS 25.0%
! TTTCAAGACTAAAATGTTTG+AGG - chr3_4:16899734-16899753 Msa0492840:CDS 25.0%
! TGAGTTTGGAAAAATTTGAT+GGG + chr3_4:16899936-16899955 None:intergenic 25.0%
! ATGAGTTTGGAAAAATTTGA+TGG + chr3_4:16899937-16899956 None:intergenic 25.0%
! ATGGAACAATTCATATTGAA+GGG - chr3_4:16900124-16900143 Msa0492840:CDS 25.0%
! GAATTACATATGAAGTTTGA+TGG - chr3_4:16900213-16900232 Msa0492840:CDS 25.0%
! AGTTTAAGAGATACTAAGTT+AGG + chr3_4:16900363-16900382 None:intergenic 25.0%
! CTTAGTATCTCTTAAACTAA+AGG - chr3_4:16900365-16900384 Msa0492840:CDS 25.0%
! ATATAAAGCTCTTTAAGCAA+AGG + chr3_4:16900579-16900598 None:intergenic 25.0%
!! ATCTTCAGTTTTTGTAAAGA+AGG + chr3_4:16900645-16900664 None:intergenic 25.0%
! TTACAAAAACTGAAGATTAG+TGG - chr3_4:16900648-16900667 Msa0492840:CDS 25.0%
GCCTTTAGCTATAAAAACAT+TGG - chr3_4:16899141-16899160 Msa0492840:CDS 30.0%
!! CCCAATGTTTTTATAGCTAA+AGG + chr3_4:16899145-16899164 None:intergenic 30.0%
GATATGTGGCAATTATTAGA+CGG - chr3_4:16899220-16899239 Msa0492840:CDS 30.0%
ATATGTGGCAATTATTAGAC+GGG - chr3_4:16899221-16899240 Msa0492840:CDS 30.0%
!! TATTGTTCCATTTTTCCCAA+GGG - chr3_4:16899316-16899335 Msa0492840:CDS 30.0%
! CATTTTTCCAAATATCACGT+TGG - chr3_4:16899464-16899483 Msa0492840:CDS 30.0%
TGAGGATGTTATCATTTAGA+TGG - chr3_4:16899752-16899771 Msa0492840:CDS 30.0%
ATGTTATCATTTAGATGGTG+TGG - chr3_4:16899757-16899776 Msa0492840:CDS 30.0%
TTCTAATCTCAGTGTATGAA+AGG + chr3_4:16899837-16899856 None:intergenic 30.0%
TACAACATACAAATGCTATC+AGG + chr3_4:16899865-16899884 None:intergenic 30.0%
ATGACGTAAATTGATGAGTT+TGG + chr3_4:16899950-16899969 None:intergenic 30.0%
!!! TTTTGTTTTCCCATATGCTT+TGG + chr3_4:16900021-16900040 None:intergenic 30.0%
TTCCACAACAAAATATGACA+GGG + chr3_4:16900055-16900074 None:intergenic 30.0%
GCAAAAATAAACCATCTTCA+TGG - chr3_4:16900105-16900124 Msa0492840:CDS 30.0%
TATGAATTGTTCCATGAAGA+TGG + chr3_4:16900119-16900138 None:intergenic 30.0%
CATGGAACAATTCATATTGA+AGG - chr3_4:16900123-16900142 Msa0492840:CDS 30.0%
AACAATTCATATTGAAGGGT+TGG - chr3_4:16900128-16900147 Msa0492840:CDS 30.0%
ACAATTCATATTGAAGGGTT+GGG - chr3_4:16900129-16900148 Msa0492840:CDS 30.0%
ATTACCTTTGTATTGTGAGA+TGG + chr3_4:16900307-16900326 None:intergenic 30.0%
AAGGTAATAGCTTTCCAAAT+TGG - chr3_4:16900319-16900338 Msa0492840:CDS 30.0%
!! ATAGAAAGCTTTTGGAGAAA+GGG + chr3_4:16900432-16900451 None:intergenic 30.0%
!! AATAGAAAGCTTTTGGAGAA+AGG + chr3_4:16900433-16900452 None:intergenic 30.0%
!! AGTCTGAAATAGAAAGCTTT+TGG + chr3_4:16900440-16900459 None:intergenic 30.0%
! TGTGATGGAATAAAGATCAT+TGG - chr3_4:16900459-16900478 Msa0492840:CDS 30.0%
AAAACATTAAGGGACAAGAA+AGG + chr3_4:16900519-16900538 None:intergenic 30.0%
! TTTCTTGTCCCTTAATGTTT+TGG - chr3_4:16900518-16900537 Msa0492840:CDS 30.0%
CCAATTGTCCAAAACATTAA+GGG + chr3_4:16900529-16900548 None:intergenic 30.0%
!! CCTTAATGTTTTGGACAATT+GGG - chr3_4:16900527-16900546 Msa0492840:CDS 30.0%
TAAACTGTCCCAATTTGAAA+AGG - chr3_4:16900601-16900620 Msa0492840:CDS 30.0%
AAACTGTCCCAATTTGAAAA+GGG - chr3_4:16900602-16900621 Msa0492840:CDS 30.0%
! TCAGTTTTTGTAAAGAAGGA+AGG + chr3_4:16900641-16900660 None:intergenic 30.0%
GCCTTTAGCTATAAAAACAT+TGG - chr3_4:16899141-16899160 Msa0492840:CDS 30.0%
!! CCCAATGTTTTTATAGCTAA+AGG + chr3_4:16899145-16899164 None:intergenic 30.0%
GATATGTGGCAATTATTAGA+CGG - chr3_4:16899220-16899239 Msa0492840:CDS 30.0%
ATATGTGGCAATTATTAGAC+GGG - chr3_4:16899221-16899240 Msa0492840:CDS 30.0%
!! TATTGTTCCATTTTTCCCAA+GGG - chr3_4:16899316-16899335 Msa0492840:CDS 30.0%
! CATTTTTCCAAATATCACGT+TGG - chr3_4:16899464-16899483 Msa0492840:CDS 30.0%
TGAGGATGTTATCATTTAGA+TGG - chr3_4:16899752-16899771 Msa0492840:CDS 30.0%
ATGTTATCATTTAGATGGTG+TGG - chr3_4:16899757-16899776 Msa0492840:CDS 30.0%
TTCTAATCTCAGTGTATGAA+AGG + chr3_4:16899837-16899856 None:intergenic 30.0%
TACAACATACAAATGCTATC+AGG + chr3_4:16899865-16899884 None:intergenic 30.0%
ATGACGTAAATTGATGAGTT+TGG + chr3_4:16899950-16899969 None:intergenic 30.0%
!!! TTTTGTTTTCCCATATGCTT+TGG + chr3_4:16900021-16900040 None:intergenic 30.0%
TTCCACAACAAAATATGACA+GGG + chr3_4:16900055-16900074 None:intergenic 30.0%
GCAAAAATAAACCATCTTCA+TGG - chr3_4:16900105-16900124 Msa0492840:CDS 30.0%
TATGAATTGTTCCATGAAGA+TGG + chr3_4:16900119-16900138 None:intergenic 30.0%
CATGGAACAATTCATATTGA+AGG - chr3_4:16900123-16900142 Msa0492840:CDS 30.0%
AACAATTCATATTGAAGGGT+TGG - chr3_4:16900128-16900147 Msa0492840:CDS 30.0%
ACAATTCATATTGAAGGGTT+GGG - chr3_4:16900129-16900148 Msa0492840:CDS 30.0%
ATTACCTTTGTATTGTGAGA+TGG + chr3_4:16900307-16900326 None:intergenic 30.0%
AAGGTAATAGCTTTCCAAAT+TGG - chr3_4:16900319-16900338 Msa0492840:CDS 30.0%
!! ATAGAAAGCTTTTGGAGAAA+GGG + chr3_4:16900432-16900451 None:intergenic 30.0%
!! AATAGAAAGCTTTTGGAGAA+AGG + chr3_4:16900433-16900452 None:intergenic 30.0%
!! AGTCTGAAATAGAAAGCTTT+TGG + chr3_4:16900440-16900459 None:intergenic 30.0%
! TGTGATGGAATAAAGATCAT+TGG - chr3_4:16900459-16900478 Msa0492840:CDS 30.0%
AAAACATTAAGGGACAAGAA+AGG + chr3_4:16900519-16900538 None:intergenic 30.0%
! TTTCTTGTCCCTTAATGTTT+TGG - chr3_4:16900518-16900537 Msa0492840:CDS 30.0%
CCAATTGTCCAAAACATTAA+GGG + chr3_4:16900529-16900548 None:intergenic 30.0%
!! CCTTAATGTTTTGGACAATT+GGG - chr3_4:16900527-16900546 Msa0492840:CDS 30.0%
TAAACTGTCCCAATTTGAAA+AGG - chr3_4:16900601-16900620 Msa0492840:CDS 30.0%
AAACTGTCCCAATTTGAAAA+GGG - chr3_4:16900602-16900621 Msa0492840:CDS 30.0%
! TCAGTTTTTGTAAAGAAGGA+AGG + chr3_4:16900641-16900660 None:intergenic 30.0%
! ACATGAATGGTCTGAGATAT+TGG - chr3_4:16899192-16899211 Msa0492840:CDS 35.0%
AGATATTGGAGACTGATATG+TGG - chr3_4:16899206-16899225 Msa0492840:CDS 35.0%
TATGTGGCAATTATTAGACG+GGG - chr3_4:16899222-16899241 Msa0492840:CDS 35.0%
CTTGGGAAAAATGGAACAAT+AGG + chr3_4:16899317-16899336 None:intergenic 35.0%
!! CTATTGTTCCATTTTTCCCA+AGG - chr3_4:16899315-16899334 Msa0492840:CDS 35.0%
TTCATAACCCTTGGGAAAAA+TGG + chr3_4:16899326-16899345 None:intergenic 35.0%
GACAAAAGAGAAGAAGAGTT+AGG - chr3_4:16899409-16899428 Msa0492840:CDS 35.0%
GACAAGATCATGCATGAAAT+AGG + chr3_4:16899494-16899513 None:intergenic 35.0%
GATTTATCCAAATCAGTGTC+AGG - chr3_4:16899517-16899536 Msa0492840:CDS 35.0%
! AAATTCTCCTGACACTGATT+TGG + chr3_4:16899527-16899546 None:intergenic 35.0%
!! TAAGCAAATAAAGGGTGCTA+TGG - chr3_4:16899549-16899568 Msa0492840:CDS 35.0%
! TAATTTGCAAACACTCTTGC+TGG - chr3_4:16899885-16899904 Msa0492840:CDS 35.0%
TAGTGCCTCTATAATCACTT+GGG + chr3_4:16899981-16900000 None:intergenic 35.0%
AAAGAAGATGCCAAAGCATA+TGG - chr3_4:16900008-16900027 Msa0492840:CDS 35.0%
AAGAAGATGCCAAAGCATAT+GGG - chr3_4:16900009-16900028 Msa0492840:CDS 35.0%
! AACCCTGTCATATTTTGTTG+TGG - chr3_4:16900050-16900069 Msa0492840:CDS 35.0%
CTTCCACAACAAAATATGAC+AGG + chr3_4:16900056-16900075 None:intergenic 35.0%
TGGATCTGATCTTAAAGAGT+TGG - chr3_4:16900083-16900102 Msa0492840:CDS 35.0%
TGAATGCAATGTATCTGTCT+TGG - chr3_4:16900245-16900264 Msa0492840:CDS 35.0%
AACCAAATAGCAACTTGAAG+AGG - chr3_4:16900277-16900296 Msa0492840:CDS 35.0%
CTTACCATCTCACAATACAA+AGG - chr3_4:16900300-16900319 Msa0492840:CDS 35.0%
ATAGCTTTCCAAATTGGCTA+AGG - chr3_4:16900325-16900344 Msa0492840:CDS 35.0%
TAGCTTTCCAAATTGGCTAA+GGG - chr3_4:16900326-16900345 Msa0492840:CDS 35.0%
TCTCTTAAACTAAAGGGTTG+TGG - chr3_4:16900372-16900391 Msa0492840:CDS 35.0%
!! TAGAAAGCTTTTGGAGAAAG+GGG + chr3_4:16900431-16900450 None:intergenic 35.0%
CTTTCTATTTCAGACTGTGA+TGG - chr3_4:16900444-16900463 Msa0492840:CDS 35.0%
ATCATTGGCGAAGAGATTTA+TGG - chr3_4:16900474-16900493 Msa0492840:CDS 35.0%
!! CCCTTAATGTTTTGGACAAT+TGG - chr3_4:16900526-16900545 Msa0492840:CDS 35.0%
CCCAATTGTCCAAAACATTA+AGG + chr3_4:16900530-16900549 None:intergenic 35.0%
!! TAATGTTTTGGACAATTGGG+AGG - chr3_4:16900530-16900549 Msa0492840:CDS 35.0%
CAAAAACTGAAGATTAGTGG+AGG - chr3_4:16900651-16900670 Msa0492840:CDS 35.0%
! ACATGAATGGTCTGAGATAT+TGG - chr3_4:16899192-16899211 Msa0492840:CDS 35.0%
AGATATTGGAGACTGATATG+TGG - chr3_4:16899206-16899225 Msa0492840:CDS 35.0%
TATGTGGCAATTATTAGACG+GGG - chr3_4:16899222-16899241 Msa0492840:CDS 35.0%
CTTGGGAAAAATGGAACAAT+AGG + chr3_4:16899317-16899336 None:intergenic 35.0%
!! CTATTGTTCCATTTTTCCCA+AGG - chr3_4:16899315-16899334 Msa0492840:CDS 35.0%
TTCATAACCCTTGGGAAAAA+TGG + chr3_4:16899326-16899345 None:intergenic 35.0%
GACAAAAGAGAAGAAGAGTT+AGG - chr3_4:16899409-16899428 Msa0492840:CDS 35.0%
GACAAGATCATGCATGAAAT+AGG + chr3_4:16899494-16899513 None:intergenic 35.0%
GATTTATCCAAATCAGTGTC+AGG - chr3_4:16899517-16899536 Msa0492840:CDS 35.0%
! AAATTCTCCTGACACTGATT+TGG + chr3_4:16899527-16899546 None:intergenic 35.0%
!! TAAGCAAATAAAGGGTGCTA+TGG - chr3_4:16899549-16899568 Msa0492840:CDS 35.0%
! TAATTTGCAAACACTCTTGC+TGG - chr3_4:16899885-16899904 Msa0492840:CDS 35.0%
TAGTGCCTCTATAATCACTT+GGG + chr3_4:16899981-16900000 None:intergenic 35.0%
AAAGAAGATGCCAAAGCATA+TGG - chr3_4:16900008-16900027 Msa0492840:CDS 35.0%
AAGAAGATGCCAAAGCATAT+GGG - chr3_4:16900009-16900028 Msa0492840:CDS 35.0%
! AACCCTGTCATATTTTGTTG+TGG - chr3_4:16900050-16900069 Msa0492840:CDS 35.0%
CTTCCACAACAAAATATGAC+AGG + chr3_4:16900056-16900075 None:intergenic 35.0%
TGGATCTGATCTTAAAGAGT+TGG - chr3_4:16900083-16900102 Msa0492840:CDS 35.0%
TGAATGCAATGTATCTGTCT+TGG - chr3_4:16900245-16900264 Msa0492840:CDS 35.0%
AACCAAATAGCAACTTGAAG+AGG - chr3_4:16900277-16900296 Msa0492840:CDS 35.0%
CTTACCATCTCACAATACAA+AGG - chr3_4:16900300-16900319 Msa0492840:CDS 35.0%
ATAGCTTTCCAAATTGGCTA+AGG - chr3_4:16900325-16900344 Msa0492840:CDS 35.0%
TAGCTTTCCAAATTGGCTAA+GGG - chr3_4:16900326-16900345 Msa0492840:CDS 35.0%
TCTCTTAAACTAAAGGGTTG+TGG - chr3_4:16900372-16900391 Msa0492840:CDS 35.0%
!! TAGAAAGCTTTTGGAGAAAG+GGG + chr3_4:16900431-16900450 None:intergenic 35.0%
CTTTCTATTTCAGACTGTGA+TGG - chr3_4:16900444-16900463 Msa0492840:CDS 35.0%
ATCATTGGCGAAGAGATTTA+TGG - chr3_4:16900474-16900493 Msa0492840:CDS 35.0%
!! CCCTTAATGTTTTGGACAAT+TGG - chr3_4:16900526-16900545 Msa0492840:CDS 35.0%
CCCAATTGTCCAAAACATTA+AGG + chr3_4:16900530-16900549 None:intergenic 35.0%
!! TAATGTTTTGGACAATTGGG+AGG - chr3_4:16900530-16900549 Msa0492840:CDS 35.0%
CAAAAACTGAAGATTAGTGG+AGG - chr3_4:16900651-16900670 Msa0492840:CDS 35.0%
ATGTGTGTGAACATCAAGTG+TGG - chr3_4:16899112-16899131 Msa0492840:CDS 40.0%
!! AAGATGGATTGATCAGGCTT+TGG - chr3_4:16899353-16899372 Msa0492840:CDS 40.0%
!! GAAGGTTTGTTGAAGTGTTG+CGG - chr3_4:16899382-16899401 Msa0492840:CDS 40.0%
AGGTCTTCCAACGTGATATT+TGG + chr3_4:16899474-16899493 None:intergenic 40.0%
TTGAAAGGACGCGTCATATT+CGG - chr3_4:16899584-16899603 Msa0492840:CDS 40.0%
GAACTCCCAAGTGATTATAG+AGG - chr3_4:16899973-16899992 Msa0492840:CDS 40.0%
CTAGTGCCTCTATAATCACT+TGG + chr3_4:16899982-16900001 None:intergenic 40.0%
! TTTGTTGTGGAAGAGCAGAA+TGG - chr3_4:16900063-16900082 Msa0492840:CDS 40.0%
ATGCAATGTATCTGTCTTGG+AGG - chr3_4:16900248-16900267 Msa0492840:CDS 40.0%
!! AGCCTCTTCAAGTTGCTATT+TGG + chr3_4:16900282-16900301 None:intergenic 40.0%
AGCTTTCCAAATTGGCTAAG+GGG - chr3_4:16900327-16900346 Msa0492840:CDS 40.0%
!! TGTAAAGAAGGAAGGTGTTG+AGG + chr3_4:16900633-16900652 None:intergenic 40.0%
ATGTGTGTGAACATCAAGTG+TGG - chr3_4:16899112-16899131 Msa0492840:CDS 40.0%
!! AAGATGGATTGATCAGGCTT+TGG - chr3_4:16899353-16899372 Msa0492840:CDS 40.0%
!! GAAGGTTTGTTGAAGTGTTG+CGG - chr3_4:16899382-16899401 Msa0492840:CDS 40.0%
AGGTCTTCCAACGTGATATT+TGG + chr3_4:16899474-16899493 None:intergenic 40.0%
TTGAAAGGACGCGTCATATT+CGG - chr3_4:16899584-16899603 Msa0492840:CDS 40.0%
GAACTCCCAAGTGATTATAG+AGG - chr3_4:16899973-16899992 Msa0492840:CDS 40.0%
CTAGTGCCTCTATAATCACT+TGG + chr3_4:16899982-16900001 None:intergenic 40.0%
! TTTGTTGTGGAAGAGCAGAA+TGG - chr3_4:16900063-16900082 Msa0492840:CDS 40.0%
ATGCAATGTATCTGTCTTGG+AGG - chr3_4:16900248-16900267 Msa0492840:CDS 40.0%
!! AGCCTCTTCAAGTTGCTATT+TGG + chr3_4:16900282-16900301 None:intergenic 40.0%
AGCTTTCCAAATTGGCTAAG+GGG - chr3_4:16900327-16900346 Msa0492840:CDS 40.0%
!! TGTAAAGAAGGAAGGTGTTG+AGG + chr3_4:16900633-16900652 None:intergenic 40.0%
TGTGTGAACATCAAGTGTGG+AGG - chr3_4:16899115-16899134 Msa0492840:CDS 45.0%
GTGTGAACATCAAGTGTGGA+GGG - chr3_4:16899116-16899135 Msa0492840:CDS 45.0%
GGTAACTCAATCTCAGCACT+GGG + chr3_4:16899261-16899280 None:intergenic 45.0%
TGGTAACTCAATCTCAGCAC+TGG + chr3_4:16899262-16899281 None:intergenic 45.0%
ACCACAATCTCCCTTCCAAT+CGG - chr3_4:16899278-16899297 Msa0492840:CDS 45.0%
AACAACGCTTCCGATTGGAA+GGG + chr3_4:16899291-16899310 None:intergenic 45.0%
AAACAACGCTTCCGATTGGA+AGG + chr3_4:16899292-16899311 None:intergenic 45.0%
!! TGGATTGATCAGGCTTTGGA+TGG - chr3_4:16899357-16899376 Msa0492840:CDS 45.0%
!! GCAAATAAAGGGTGCTATGG+TGG - chr3_4:16899552-16899571 Msa0492840:CDS 45.0%
!! ATAAAGGGTGCTATGGTGGA+AGG - chr3_4:16899556-16899575 Msa0492840:CDS 45.0%
GAATATGACGCGTCCTTTCA+AGG + chr3_4:16899585-16899604 None:intergenic 45.0%
AGAGCCAATATGTGAGCTGA+AGG - chr3_4:16899642-16899661 Msa0492840:CDS 45.0%
GAGCCAATATGTGAGCTGAA+GGG - chr3_4:16899643-16899662 Msa0492840:CDS 45.0%
AGTCCCTTCAGCTCACATAT+TGG + chr3_4:16899649-16899668 None:intergenic 45.0%
TTGCAAACACTCTTGCTGGA+AGG - chr3_4:16899889-16899908 Msa0492840:CDS 45.0%
TGACAACCCCTTAGCCAATT+TGG + chr3_4:16900336-16900355 None:intergenic 45.0%
TGTTCTTTGTTGCCACCACT+TGG - chr3_4:16900399-16900418 Msa0492840:CDS 45.0%
GTTCTTTGTTGCCACCACTT+GGG - chr3_4:16900400-16900419 Msa0492840:CDS 45.0%
! TTTTGGACAATTGGGAGGAG+TGG - chr3_4:16900535-16900554 Msa0492840:CDS 45.0%
AGGAGTGGTTGTGTCTTGAA+GGG - chr3_4:16900550-16900569 Msa0492840:CDS 45.0%
! GGCAGAGCCCTTTTCAAATT+GGG + chr3_4:16900612-16900631 None:intergenic 45.0%
! AGGCAGAGCCCTTTTCAAAT+TGG + chr3_4:16900613-16900632 None:intergenic 45.0%
TGTGTGAACATCAAGTGTGG+AGG - chr3_4:16899115-16899134 Msa0492840:CDS 45.0%
GTGTGAACATCAAGTGTGGA+GGG - chr3_4:16899116-16899135 Msa0492840:CDS 45.0%
GGTAACTCAATCTCAGCACT+GGG + chr3_4:16899261-16899280 None:intergenic 45.0%
TGGTAACTCAATCTCAGCAC+TGG + chr3_4:16899262-16899281 None:intergenic 45.0%
ACCACAATCTCCCTTCCAAT+CGG - chr3_4:16899278-16899297 Msa0492840:CDS 45.0%
AACAACGCTTCCGATTGGAA+GGG + chr3_4:16899291-16899310 None:intergenic 45.0%
AAACAACGCTTCCGATTGGA+AGG + chr3_4:16899292-16899311 None:intergenic 45.0%
!! TGGATTGATCAGGCTTTGGA+TGG - chr3_4:16899357-16899376 Msa0492840:CDS 45.0%
!! GCAAATAAAGGGTGCTATGG+TGG - chr3_4:16899552-16899571 Msa0492840:CDS 45.0%
!! ATAAAGGGTGCTATGGTGGA+AGG - chr3_4:16899556-16899575 Msa0492840:CDS 45.0%
GAATATGACGCGTCCTTTCA+AGG + chr3_4:16899585-16899604 None:intergenic 45.0%
AGAGCCAATATGTGAGCTGA+AGG - chr3_4:16899642-16899661 Msa0492840:CDS 45.0%
GAGCCAATATGTGAGCTGAA+GGG - chr3_4:16899643-16899662 Msa0492840:CDS 45.0%
AGTCCCTTCAGCTCACATAT+TGG + chr3_4:16899649-16899668 None:intergenic 45.0%
TTGCAAACACTCTTGCTGGA+AGG - chr3_4:16899889-16899908 Msa0492840:CDS 45.0%
TGACAACCCCTTAGCCAATT+TGG + chr3_4:16900336-16900355 None:intergenic 45.0%
TGTTCTTTGTTGCCACCACT+TGG - chr3_4:16900399-16900418 Msa0492840:CDS 45.0%
GTTCTTTGTTGCCACCACTT+GGG - chr3_4:16900400-16900419 Msa0492840:CDS 45.0%
! TTTTGGACAATTGGGAGGAG+TGG - chr3_4:16900535-16900554 Msa0492840:CDS 45.0%
AGGAGTGGTTGTGTCTTGAA+GGG - chr3_4:16900550-16900569 Msa0492840:CDS 45.0%
! GGCAGAGCCCTTTTCAAATT+GGG + chr3_4:16900612-16900631 None:intergenic 45.0%
! AGGCAGAGCCCTTTTCAAAT+TGG + chr3_4:16900613-16900632 None:intergenic 45.0%
TCCGATTGGAAGGGAGATTG+TGG + chr3_4:16899282-16899301 None:intergenic 50.0%
GGCAAAACAACGCTTCCGAT+TGG + chr3_4:16899296-16899315 None:intergenic 50.0%
!! ATCAGGCTTTGGATGGCAGA+AGG - chr3_4:16899364-16899383 Msa0492840:CDS 50.0%
! TGGTGGAAGGTAGCCTTGAA+AGG - chr3_4:16899569-16899588 Msa0492840:CDS 50.0%
GAGGAGTGGTTGTGTCTTGA+AGG - chr3_4:16900549-16900568 Msa0492840:CDS 50.0%
TCCGATTGGAAGGGAGATTG+TGG + chr3_4:16899282-16899301 None:intergenic 50.0%
GGCAAAACAACGCTTCCGAT+TGG + chr3_4:16899296-16899315 None:intergenic 50.0%
!! ATCAGGCTTTGGATGGCAGA+AGG - chr3_4:16899364-16899383 Msa0492840:CDS 50.0%
! TGGTGGAAGGTAGCCTTGAA+AGG - chr3_4:16899569-16899588 Msa0492840:CDS 50.0%
GAGGAGTGGTTGTGTCTTGA+AGG - chr3_4:16900549-16900568 Msa0492840:CDS 50.0%
GTGTGGTCTCTCAGAGCTAG+TGG - chr3_4:16899774-16899793 Msa0492840:CDS 55.0%
TGATCCTGCAGATGCTGCGA+CGG - chr3_4:16900161-16900180 Msa0492840:CDS 55.0%
GTGTGGTCTCTCAGAGCTAG+TGG - chr3_4:16899774-16899793 Msa0492840:CDS 55.0%
TGATCCTGCAGATGCTGCGA+CGG - chr3_4:16900161-16900180 Msa0492840:CDS 55.0%
TTTGCCGTCGCAGCATCTGC+AGG + chr3_4:16900168-16900187 None:intergenic 60.0%
!! AGAAAGGGGAGCGTCCCAAG+TGG + chr3_4:16900417-16900436 None:intergenic 60.0%
TTTGCCGTCGCAGCATCTGC+AGG + chr3_4:16900168-16900187 None:intergenic 60.0%
!! AGAAAGGGGAGCGTCCCAAG+TGG + chr3_4:16900417-16900436 None:intergenic 60.0%
!! AAGGGGAGCGTCCCAAGTGG+TGG + chr3_4:16900414-16900433 None:intergenic 65.0%
!! AAGGGGAGCGTCCCAAGTGG+TGG + chr3_4:16900414-16900433 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 16899094 16900692 16899094 ID=Msa0492840;Name=Msa0492840
chr3_4 mRNA 16899094 16900692 16899094 ID=Msa0492840-mRNA-1;Parent=Msa0492840;Name=Msa0492840-mRNA-1;_AED=0.26;_eAED=0.26;_QI=0|-1|0|1|-1|1|1|0|532
chr3_4 exon 16899094 16900692 16899094 ID=Msa0492840-mRNA-1:exon:4801;Parent=Msa0492840-mRNA-1
chr3_4 CDS 16899094 16900692 16899094 ID=Msa0492840-mRNA-1:cds;Parent=Msa0492840-mRNA-1
Gene Sequence

>Msa0492840

ATGCTTTTCATGGCAAGAATGTGTGTGAACATCAAGTGTGGAGGGCTGCCTTTAGCTATAAAAACATTGGGGCAACTATTGCGAAGAAAATTTTCTCAACATGAATGGTCTGAGATATTGGAGACTGATATGTGGCAATTATTAGACGGGGACAACAAAATTAACCCAGTGCTGAGATTGAGTTACCACAATCTCCCTTCCAATCGGAAGCGTTGTTTTGCCTATTGTTCCATTTTTCCCAAGGGTTATGAATTTAAAAAAGATGGATTGATCAGGCTTTGGATGGCAGAAGGTTTGTTGAAGTGTTGCGGAAGAGACAAAAGAGAAGAAGAGTTAGGTAATGAAATTTTCAGTGATCTTGAGTCAATTTCATTTTTCCAAATATCACGTTGGAAGACCTATTTCATGCATGATCTTGTCAATGATTTATCCAAATCAGTGTCAGGAGAATTTTGTAAGCAAATAAAGGGTGCTATGGTGGAAGGTAGCCTTGAAAGGACGCGTCATATTCGGTTCTCTCTTCAATCAAATTTTGTTGATAAATTACTAGAGCCAATATGTGAGCTGAAGGGACTACGAAGTCTGATACTAAAAGACTATAAGAGTGTGTCGATAAGCAACAGTGTGCAACATGATCTGTTTTCAAGACTAAAATGTTTGAGGATGTTATCATTTAGATGGTGTGGTCTCTCAGAGCTAGTGGATGAGATAAGCAATTTAAAACTTTTGCGTTATCTAGACCTTTCATACACTGAGATTAGAAGCTTACCTGATAGCATTTGTATGTTGTATAATTTGCAAACACTCTTGCTGGAAGGCTGTGATGAATTGACAGAGCTCCCATCAAATTTTTCCAAACTCATCAATTTACGTCATCTTGAACTCCCAAGTGATTATAGAGGCACTAGAAGAATAAAGAAGATGCCAAAGCATATGGGAAAACAAAACAATCTTCAAACCCTGTCATATTTTGTTGTGGAAGAGCAGAATGGATCTGATCTTAAAGAGTTGGCAAAAATAAACCATCTTCATGGAACAATTCATATTGAAGGGTTGGGTAATGTGATTGATCCTGCAGATGCTGCGACGGCAAATTTAAAACATAAGAAGCATTTAGAAGAATTACATATGAAGTTTGATGGCTCAACAATTGAATGCAATGTATCTGTCTTGGAGGCTCTTCAACCAAATAGCAACTTGAAGAGGCTTACCATCTCACAATACAAAGGTAATAGCTTTCCAAATTGGCTAAGGGGTTGTCAGTTACCTAACTTAGTATCTCTTAAACTAAAGGGTTGTGGATTATGTTCTTTGTTGCCACCACTTGGGACGCTCCCCTTTCTCCAAAAGCTTTCTATTTCAGACTGTGATGGAATAAAGATCATTGGCGAAGAGATTTATGGTAACAATTTAACAAATGTTCCTTTCTTGTCCCTTAATGTTTTGGACAATTGGGAGGAGTGGTTGTGTCTTGAAGGGTTTCCTTTGCTTAAAGAGCTTTATATAATAAACTGTCCCAATTTGAAAAGGGCTCTGCCTCAACACCTTCCTTCTTTACAAAAACTGAAGATTAGTGGAGGCATCAATTCCCAAGTGTGA

Protein sequence

>Msa0492840

MLFMARMCVNIKCGGLPLAIKTLGQLLRRKFSQHEWSEILETDMWQLLDGDNKINPVLRLSYHNLPSNRKRCFAYCSIFPKGYEFKKDGLIRLWMAEGLLKCCGRDKREEELGNEIFSDLESISFFQISRWKTYFMHDLVNDLSKSVSGEFCKQIKGAMVEGSLERTRHIRFSLQSNFVDKLLEPICELKGLRSLILKDYKSVSISNSVQHDLFSRLKCLRMLSFRWCGLSELVDEISNLKLLRYLDLSYTEIRSLPDSICMLYNLQTLLLEGCDELTELPSNFSKLINLRHLELPSDYRGTRRIKKMPKHMGKQNNLQTLSYFVVEEQNGSDLKELAKINHLHGTIHIEGLGNVIDPADAATANLKHKKHLEELHMKFDGSTIECNVSVLEALQPNSNLKRLTISQYKGNSFPNWLRGCQLPNLVSLKLKGCGLCSLLPPLGTLPFLQKLSISDCDGIKIIGEEIYGNNLTNVPFLSLNVLDNWEEWLCLEGFPLLKELYIINCPNLKRALPQHLPSLQKLKISGGINSQV*