AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0469940


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0469940 MtrunA17_Chr3g0077161 91.837 98 4 1 1 94 1 98 5.90e-61 180
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0469940 AT1G72170.1 68.889 90 24 2 1 87 1 89 9.59e-40 127
Msa0469940 AT1G22520.1 73.418 79 17 1 14 88 12 90 9.36e-38 122
Msa0469940 AT1G22520.2 73.418 79 17 1 14 88 12 90 1.16e-36 122

Find 53 sgRNAs with CRISPR-Local

Find 518 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAATAGATGATGCTATATT+TGG 0.117210 3_3:-71982282 Msa0469940:exon
CGCTGGGCTTCTATTGCTTT+TGG 0.217123 3_3:-71982980 Msa0469940:CDS
TTCGGTTGTGCAAGCTTTGC+TGG 0.240747 3_3:+71982899 None:intergenic
CGATGTTTGAATTAATAGTA+TGG 0.283744 3_3:-71981947 Msa0469940:three_prime_UTR
GAATGTTCTCGTCTGTTTGA+TGG 0.310140 3_3:-71982926 Msa0469940:CDS
TAAACATAGTGCAGAATTAC+AGG 0.331734 3_3:+71982107 None:intergenic
TTTGGTGCTGGAGTGGGAAT+AGG 0.400010 3_3:-71982962 Msa0469940:CDS
TATATTTGGATCCTGGTTCC+TGG 0.403974 3_3:-71982268 Msa0469940:three_prime_UTR
TAGGGAGTCCTCAGACTCGC+TGG 0.408022 3_3:-71982997 Msa0469940:CDS
ATGAAATCAATGTGATTTCT+CGG 0.413662 3_3:+71988525 None:intergenic
CTAATTATCTTTATTCCATA+CGG 0.417032 3_3:-71982040 Msa0469940:three_prime_UTR
TCCAACTCGTTCCGTTCCGA+TGG 0.420966 3_3:-71988414 Msa0469940:exon
GTGATTTCTCGGGTCGGGTC+GGG 0.426564 3_3:+71988536 None:intergenic
ATCAAGGCAGGCATCCCATT+TGG 0.436230 3_3:+71988346 None:intergenic
CAGAATTACAGGAGAACAAA+AGG 0.443509 3_3:+71982118 None:intergenic
TAAAGGAACAATCAATAGTC+AGG 0.443513 3_3:+71982225 None:intergenic
AGTATGACGTCGATGCCAAA+TGG 0.464332 3_3:-71988361 Msa0469940:CDS
TGTGATTTCTCGGGTCGGGT+CGG 0.471236 3_3:+71988535 None:intergenic
GAGGAGACCGCCGAAAGCAC+CGG 0.471355 3_3:+71988289 None:intergenic
GCCGAAAGCACCGGCAAAAG+AGG 0.478465 3_3:+71988298 None:intergenic
AGCTTGGAAATAAATTTCCA+TGG 0.487182 3_3:+71982146 None:intergenic
TGTGCTACCTCTGAGTCCTT+CGG 0.490928 3_3:+71982881 None:intergenic
TGTTTCACTGTCCAGGAACC+AGG 0.491220 3_3:+71982257 None:intergenic
ATGATGCTATATTTGGATCC+TGG 0.491507 3_3:-71982275 Msa0469940:three_prime_UTR
AATGCTCTGTTTCACTGTCC+AGG 0.494714 3_3:+71982250 None:intergenic
TAATTATCTTTATTCCATAC+GGG 0.497275 3_3:-71982039 Msa0469940:three_prime_UTR
TCAATGTGATTTCTCGGGTC+GGG 0.502238 3_3:+71988531 None:intergenic
TTCATTTCATTCAACTAAGA+CGG 0.509975 3_3:-71988451 Msa0469940:five_prime_UTR
AGCGGCGGACGGTGAGATCA+AGG 0.514989 3_3:+71988330 None:intergenic
TGAAATCAATGTGATTTCTC+GGG 0.518337 3_3:+71988526 None:intergenic
TAAATTAACAATACTGCCCA+TGG 0.526410 3_3:-71982163 Msa0469940:three_prime_UTR
GTGGGCTGGGCGAGGCCTTG+TGG 0.529050 3_3:-71988570 Msa0469940:five_prime_UTR
ATAGAAGCCCAGCGAGTCTG+AGG 0.535981 3_3:+71982989 None:intergenic
CAATAGCTATAACTGAGTAA+AGG 0.539456 3_3:+71982208 None:intergenic
ATCAATGTGATTTCTCGGGT+CGG 0.544038 3_3:+71988530 None:intergenic
GTATGACGTCGATGCCAAAT+GGG 0.550085 3_3:-71988360 Msa0469940:CDS
CCAACTCGTTCCGTTCCGAT+GGG 0.554127 3_3:-71988413 Msa0469940:exon
GGAGAAGGTACTGACTGAAA+AGG 0.557850 3_3:+71988267 None:intergenic
AGAACAAAAGGATAACAGCT+TGG 0.559366 3_3:+71982130 None:intergenic
CGGGTTGTGTTTAAACCACA+AGG 0.562664 3_3:+71988555 None:intergenic
CCCATCGGAACGGAACGAGT+TGG 0.566539 3_3:+71988413 None:intergenic
ATCGTATGCAAAATACATGT+AGG 0.566794 3_3:+71981966 None:intergenic
GCGGACGGTGAGATCAAGGC+AGG 0.574717 3_3:+71988334 None:intergenic
ATTTCATTCAACTAAGACGG+TGG 0.583166 3_3:-71988448 Msa0469940:five_prime_UTR
AGGGAGTCCTCAGACTCGCT+GGG 0.588615 3_3:-71982996 Msa0469940:CDS
AGCAAAGCTTGCACAACCGA+AGG 0.600829 3_3:-71982897 Msa0469940:CDS
GCTTGGAAATAAATTTCCAT+GGG 0.603610 3_3:+71982147 None:intergenic
GGAGTAAACGAAGCGGCGGA+CGG 0.621586 3_3:+71988319 None:intergenic
GAAGGTACTGACTGAAAAGG+AGG 0.624142 3_3:+71988270 None:intergenic
AAGAGGAGTAAACGAAGCGG+CGG 0.665689 3_3:+71988315 None:intergenic
TTTCATTGAGAGCACGCACG+CGG 0.669006 3_3:-71988508 Msa0469940:five_prime_UTR
TGCACAACCGAAGGACTCAG+AGG 0.701693 3_3:-71982888 Msa0469940:intron
CAAAAGAGGAGTAAACGAAG+CGG 0.703591 3_3:+71988312 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAATTATAGAATGAA+AGG + chr3_3:71982349-71982368 None:intergenic 10.0%
!! ATGATTTATATTAAAGAATT+AGG - chr3_3:71982800-71982819 Msa0469940:intron 10.0%
!! TGATTTATATTAAAGAATTA+GGG - chr3_3:71982801-71982820 Msa0469940:intron 10.0%
!!! AAATTGTTTTTTATAGTTTA+AGG + chr3_3:71983007-71983026 None:intergenic 10.0%
!! AACTATAAAAAACAATTTAA+AGG - chr3_3:71983009-71983028 Msa0469940:intron 10.0%
!!! AATCACATAATTTTAAAATT+AGG - chr3_3:71985281-71985300 Msa0469940:intron 10.0%
!!! ATCACATAATTTTAAAATTA+GGG - chr3_3:71985282-71985301 Msa0469940:intron 10.0%
!!! TAGTTTATACTTTTTTTTTT+TGG + chr3_3:71986132-71986151 None:intergenic 10.0%
!!! ATTAGTTTATACTTTTTTTT+TGG + chr3_3:71986134-71986153 None:intergenic 10.0%
!!! TAGATTTTTATTTTTTTAGA+AGG + chr3_3:71986612-71986631 None:intergenic 10.0%
!! AAAAATAGAAATATAGTATT+GGG + chr3_3:71987101-71987120 None:intergenic 10.0%
!! TAAAAATAGAAATATAGTAT+TGG + chr3_3:71987102-71987121 None:intergenic 10.0%
!! TTAATTCCATAATTATAATT+TGG + chr3_3:71987407-71987426 None:intergenic 10.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr3_3:71985253-71985272 Msa0469940:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr3_3:71985253-71985272 Msa0469940:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr3_3:71985253-71985272 Msa0469940:intron 100.0%
!! AATAATATACAGTTACAATT+AGG + chr3_3:71982246-71982265 None:intergenic 15.0%
!! AATTGTAACTGTATATTATT+AGG - chr3_3:71982246-71982265 Msa0469940:three_prime_UTR 15.0%
!! ATTGTAACTGTATATTATTA+GGG - chr3_3:71982247-71982266 Msa0469940:three_prime_UTR 15.0%
!!! AAATTGTTTTTTATGGTTTA+AGG + chr3_3:71983036-71983055 None:intergenic 15.0%
!! AACCATAAAAAACAATTTAA+AGG - chr3_3:71983038-71983057 Msa0469940:intron 15.0%
!!! TAGTTGATTTTAATAGTTTA+GGG - chr3_3:71983163-71983182 Msa0469940:intron 15.0%
!!! ATTAAGCCTTTAAATTTTAA+AGG + chr3_3:71983904-71983923 None:intergenic 15.0%
!!! TCACATAATTTTAAAATTAG+GGG - chr3_3:71985283-71985302 Msa0469940:intron 15.0%
!!! TTGATTTGAAGTATTAAATT+TGG + chr3_3:71985328-71985347 None:intergenic 15.0%
!!! TTTTATTAAGGAAAAAACTT+AGG - chr3_3:71986788-71986807 Msa0469940:intron 15.0%
!! TTTAAATCACCAATTAATAA+AGG + chr3_3:71987165-71987184 None:intergenic 15.0%
!!! TATTAATTGGTGATTTAAAT+AGG - chr3_3:71987166-71987185 Msa0469940:intron 15.0%
!!! TTAGTTATTTTTATTGTACT+AGG - chr3_3:71987428-71987447 Msa0469940:intron 15.0%
!!! TAGTTATTTTTATTGTACTA+GGG - chr3_3:71987429-71987448 Msa0469940:intron 15.0%
!!! TATTTTCTTGTTTATATATG+TGG - chr3_3:71987629-71987648 Msa0469940:intron 15.0%
!!! ATTTTCTTGTTTATATATGT+GGG - chr3_3:71987630-71987649 Msa0469940:intron 15.0%
!! AAAAATAGAAATATTGCATT+GGG + chr3_3:71987770-71987789 None:intergenic 15.0%
!! TAAAAATAGAAATATTGCAT+TGG + chr3_3:71987771-71987790 None:intergenic 15.0%
!! AAAATGAATGAATGAATCTA+CGG + chr3_3:71982215-71982234 None:intergenic 20.0%
!!! TTTAGCTATTATTTTTAGAC+TGG - chr3_3:71982915-71982934 Msa0469940:CDS 20.0%
!!! GACCTTTAAATTGTTTTTTA+TGG + chr3_3:71983014-71983033 None:intergenic 20.0%
!!! TTGTTTTTCATCATAGTTTA+AGG - chr3_3:71983114-71983133 Msa0469940:intron 20.0%
!! TATTAAAATCAACTAGACTA+TGG + chr3_3:71983158-71983177 None:intergenic 20.0%
!!! CTAGTTGATTTTAATAGTTT+AGG - chr3_3:71983162-71983181 Msa0469940:intron 20.0%
!! TATTGTAAAGAAGTTTAACA+CGG - chr3_3:71983331-71983350 Msa0469940:intron 20.0%
!!! AGAAAGCCTTTAAAATTTAA+AGG - chr3_3:71983895-71983914 Msa0469940:intron 20.0%
!! GAGACTATAAAATTATAAAG+GGG + chr3_3:71983981-71984000 None:intergenic 20.0%
!! GGAGACTATAAAATTATAAA+GGG + chr3_3:71983982-71984001 None:intergenic 20.0%
!! CATTTGGTTAAAATTTGATT+GGG + chr3_3:71984003-71984022 None:intergenic 20.0%
!! ACATTTGGTTAAAATTTGAT+TGG + chr3_3:71984004-71984023 None:intergenic 20.0%
!!! TAATTCAATAACCATGTTTT+AGG - chr3_3:71984111-71984130 Msa0469940:intron 20.0%
!! ACTATCTAATTACTAAAACA+TGG + chr3_3:71984635-71984654 None:intergenic 20.0%
!! ATATTTATGTTATTGCCAAA+AGG - chr3_3:71984680-71984699 Msa0469940:intron 20.0%
!! AACATGAATGAATTATGAAT+TGG - chr3_3:71984716-71984735 Msa0469940:intron 20.0%
!! GAGAAAATATAAATACTTGT+CGG - chr3_3:71985036-71985055 Msa0469940:intron 20.0%
!!! CACATAATTTTAAAATTAGG+GGG - chr3_3:71985284-71985303 Msa0469940:intron 20.0%
!!! ACATAATTTTAAAATTAGGG+GGG - chr3_3:71985285-71985304 Msa0469940:intron 20.0%
!!! AAATCAATTTTGTCAAGATT+GGG - chr3_3:71985341-71985360 Msa0469940:intron 20.0%
!! TAATATGTAAAATTGCAACT+AGG - chr3_3:71985399-71985418 Msa0469940:intron 20.0%
!! ACAATCATACTATTTGTAAA+TGG + chr3_3:71985551-71985570 None:intergenic 20.0%
!!! TTATAAAGAGGCTTTTATTA+AGG - chr3_3:71986776-71986795 Msa0469940:intron 20.0%
!!! AACAAACTTTGAGAAAATTA+TGG + chr3_3:71986875-71986894 None:intergenic 20.0%
!! AAACTTAAGTACAATTCTTT+AGG + chr3_3:71986944-71986963 None:intergenic 20.0%
!! AAAAATAGCCCAATATATTT+GGG + chr3_3:71987330-71987349 None:intergenic 20.0%
!! AAATACATATGTAACTGAAT+TGG + chr3_3:71988076-71988095 None:intergenic 20.0%
!!! TTATGTTCTGAAAGAAAAAA+AGG - chr3_3:71988357-71988376 Msa0469940:CDS 20.0%
!! CTAATTATCTTTATTCCATA+CGG - chr3_3:71988404-71988423 Msa0469940:exon 20.0%
!! TAATTATCTTTATTCCATAC+GGG - chr3_3:71988405-71988424 Msa0469940:exon 20.0%
!!! ACTTATCAGTGATATTTTTT+TGG + chr3_3:71988562-71988581 None:intergenic 20.0%
! ATGAAATCAATGTGATTTCT+CGG + chr3_3:71981922-71981941 None:intergenic 25.0%
! TTCATTTCATTCAACTAAGA+CGG - chr3_3:71981993-71982012 Msa0469940:three_prime_UTR 25.0%
! AAATTATAGAATGAAAGGTG+AGG + chr3_3:71982344-71982363 None:intergenic 25.0%
! ATGAAAATTTGTGAGAATGA+GGG + chr3_3:71982412-71982431 None:intergenic 25.0%
!! TTTTTGTATATGCTATAAGC+TGG - chr3_3:71982596-71982615 Msa0469940:intron 25.0%
! TTTCTAAGCTATATTCGAAT+TGG - chr3_3:71982620-71982639 Msa0469940:intron 25.0%
!!! TAAGTTTTGTGAGATTGTTT+AGG + chr3_3:71982711-71982730 None:intergenic 25.0%
! AATCTAAACAAGAACTTAGA+CGG - chr3_3:71982757-71982776 Msa0469940:intron 25.0%
! AAAATAGTTGGATGAGATAA+TGG + chr3_3:71983072-71983091 None:intergenic 25.0%
!! CAACAAATTTTGTTAACAGA+GGG + chr3_3:71983097-71983116 None:intergenic 25.0%
!! ACAACAAATTTTGTTAACAG+AGG + chr3_3:71983098-71983117 None:intergenic 25.0%
! TCTTTACAATAAATCACTTC+AGG + chr3_3:71983322-71983341 None:intergenic 25.0%
!! TTTTATGCTTAATTGCATAG+TGG - chr3_3:71983600-71983619 Msa0469940:intron 25.0%
! CAGCGTAAAAATAAAATCTA+GGG - chr3_3:71983707-71983726 Msa0469940:intron 25.0%
! AGCGTAAAAATAAAATCTAG+GGG - chr3_3:71983708-71983727 Msa0469940:intron 25.0%
! GTTCAAAATGCAAAATATAG+CGG - chr3_3:71983730-71983749 Msa0469940:intron 25.0%
!!! AGCGGTATTTTGTATTTTTT+AGG - chr3_3:71983748-71983767 Msa0469940:intron 25.0%
!!! TTTTGTATTTTTTAGGTTCG+AGG - chr3_3:71983755-71983774 Msa0469940:intron 25.0%
!!! TTTGTATTTTTTAGGTTCGA+GGG - chr3_3:71983756-71983775 Msa0469940:intron 25.0%
! ATTATAAAGGGGATAAACTA+GGG + chr3_3:71983970-71983989 None:intergenic 25.0%
! AATTATAAAGGGGATAAACT+AGG + chr3_3:71983971-71983990 None:intergenic 25.0%
! GGGAGACTATAAAATTATAA+AGG + chr3_3:71983983-71984002 None:intergenic 25.0%
! TTAACCAAATGTTAACCATA+AGG - chr3_3:71984012-71984031 Msa0469940:intron 25.0%
!!! TAGAAAAGTTGGTAGAAAAT+AGG - chr3_3:71984361-71984380 Msa0469940:intron 25.0%
!! TTTTCTAATGGTTTCTCAAA+AGG + chr3_3:71984496-71984515 None:intergenic 25.0%
! AACCATTAGAAAAGATTTAG+AGG - chr3_3:71984503-71984522 Msa0469940:intron 25.0%
! GTTCTATCAAAAACCATATT+TGG + chr3_3:71984543-71984562 None:intergenic 25.0%
!! TTCAAAAGTTCTTATCCTTT+TGG + chr3_3:71984698-71984717 None:intergenic 25.0%
! TATTTGGTCAAAATCTGATT+GGG - chr3_3:71985193-71985212 Msa0469940:intron 25.0%
!! CAAATCAATTTTGTCAAGAT+TGG - chr3_3:71985340-71985359 Msa0469940:intron 25.0%
! TACTATTTGTAAATGGAGAA+GGG + chr3_3:71985544-71985563 None:intergenic 25.0%
! ATACTATTTGTAAATGGAGA+AGG + chr3_3:71985545-71985564 None:intergenic 25.0%
! TGACATTTATATCTATTCCT+TGG + chr3_3:71985763-71985782 None:intergenic 25.0%
!! GTATCTTTTCAGATTGTAAT+AGG - chr3_3:71985869-71985888 Msa0469940:intron 25.0%
! GAATACCAACTTAGATAATA+AGG + chr3_3:71986590-71986609 None:intergenic 25.0%
! AAACTTTGGTACTTATAAAG+AGG - chr3_3:71986764-71986783 Msa0469940:intron 25.0%
! TTGAGAAAATTATGGATTTG+AGG + chr3_3:71986867-71986886 None:intergenic 25.0%
! TAGCAAGACACATTAATAAA+AGG + chr3_3:71986970-71986989 None:intergenic 25.0%
!! AGAAATATAGTATTGGGAAA+TGG + chr3_3:71987095-71987114 None:intergenic 25.0%
! TAGCATTCTCCTTTATTAAT+TGG - chr3_3:71987153-71987172 Msa0469940:intron 25.0%
! CAAAAATAGCCCAATATATT+TGG + chr3_3:71987331-71987350 None:intergenic 25.0%
! TAAAAAAAATGTCAAGGTCA+TGG + chr3_3:71987368-71987387 None:intergenic 25.0%
! AGACTGTAAAAAAAATGTCA+AGG + chr3_3:71987374-71987393 None:intergenic 25.0%
! TTAAGGAAATCAAAAGTAGT+AGG - chr3_3:71987681-71987700 Msa0469940:intron 25.0%
!! CGGATCAGATTAAAATTTTA+TGG - chr3_3:71987955-71987974 Msa0469940:intron 25.0%
!! GATTAAAATTTTATGGCCTA+TGG - chr3_3:71987962-71987981 Msa0469940:intron 25.0%
! AGCACAAAATATACTTTGTT+AGG + chr3_3:71988117-71988136 None:intergenic 25.0%
! TGAATAGATGATGCTATATT+TGG - chr3_3:71988162-71988181 Msa0469940:intron 25.0%
! CAAAAAGAATTCTTATTGCT+GGG + chr3_3:71988458-71988477 None:intergenic 25.0%
! CGATGTTTGAATTAATAGTA+TGG - chr3_3:71988497-71988516 Msa0469940:five_prime_UTR 25.0%
TGAAATCAATGTGATTTCTC+GGG + chr3_3:71981921-71981940 None:intergenic 30.0%
!!! TGTTCTTTATTTTCACCCAT+CGG + chr3_3:71982049-71982068 None:intergenic 30.0%
GATGAAAATTTGTGAGAATG+AGG + chr3_3:71982413-71982432 None:intergenic 30.0%
TATAGCACAATCACTTATCA+TGG - chr3_3:71982498-71982517 Msa0469940:intron 30.0%
! AGCTAACTGTAATTTTCACA+AGG + chr3_3:71982673-71982692 None:intergenic 30.0%
GCTTATTTGAACTTATCTAC+TGG + chr3_3:71982736-71982755 None:intergenic 30.0%
! GTCTAAGTTCTTGTTTAGAT+TGG + chr3_3:71982758-71982777 None:intergenic 30.0%
! ACTTGTCTAGAATATAGAGT+CGG + chr3_3:71982846-71982865 None:intergenic 30.0%
TATATTCTAGACAAGTGAGT+GGG - chr3_3:71982850-71982869 Msa0469940:intron 30.0%
! TTTTTAGACTGGAGTATAGT+TGG - chr3_3:71982926-71982945 Msa0469940:CDS 30.0%
! TTGGATGAGATAATGGTTTA+AGG + chr3_3:71983065-71983084 None:intergenic 30.0%
TGATGAGACAGTGATAATTT+AGG - chr3_3:71983193-71983212 Msa0469940:intron 30.0%
GATGAGACAGTGATAATTTA+GGG - chr3_3:71983194-71983213 Msa0469940:intron 30.0%
GGATCAAATTGACTGTTTAT+TGG - chr3_3:71983215-71983234 Msa0469940:intron 30.0%
AAATGCCTAGAATGAGTATT+TGG + chr3_3:71983385-71983404 None:intergenic 30.0%
TACGCATACTTAAACCAAAA+TGG - chr3_3:71983410-71983429 Msa0469940:intron 30.0%
TCAAATAATTCCACAGACAT+TGG - chr3_3:71983542-71983561 Msa0469940:intron 30.0%
!!! GTTCAAACTTTTGAGTTCTT+GGG - chr3_3:71983680-71983699 Msa0469940:intron 30.0%
GCAGCGTAAAAATAAAATCT+AGG - chr3_3:71983706-71983725 Msa0469940:intron 30.0%
TACAAATCATGTTACCATCA+GGG + chr3_3:71983816-71983835 None:intergenic 30.0%
TTACAAATCATGTTACCATC+AGG + chr3_3:71983817-71983836 None:intergenic 30.0%
! CATGTGTACATGAAATTTTG+TGG + chr3_3:71983853-71983872 None:intergenic 30.0%
TTATAAAGGGGATAAACTAG+GGG + chr3_3:71983969-71983988 None:intergenic 30.0%
AACACCTTATGGTTAACATT+TGG + chr3_3:71984019-71984038 None:intergenic 30.0%
CTTATCTCTATTGAACATGT+TGG - chr3_3:71984064-71984083 Msa0469940:intron 30.0%
!! ATTGAACATGTTGGTTTGAA+AGG - chr3_3:71984073-71984092 Msa0469940:intron 30.0%
! TCTACCAACTTTTCTACTAT+AGG + chr3_3:71984357-71984376 None:intergenic 30.0%
TTGATCTACTCTTCTTACAA+CGG + chr3_3:71984427-71984446 None:intergenic 30.0%
TGTAAGAAGAGTAGATCAAA+TGG - chr3_3:71984428-71984447 Msa0469940:intron 30.0%
! GTTTCTCAAAAGGTTTTCTT+AGG + chr3_3:71984486-71984505 None:intergenic 30.0%
! GACCTCTAAATCTTTTCTAA+TGG + chr3_3:71984508-71984527 None:intergenic 30.0%
! TGGTTTTTGATAGAACACTA+TGG - chr3_3:71984547-71984566 Msa0469940:intron 30.0%
! TTTTATAGGATCGTGAATCT+TGG - chr3_3:71984786-71984805 Msa0469940:intron 30.0%
! GCGCAAAAGTATAAAAGTAT+AGG + chr3_3:71984813-71984832 None:intergenic 30.0%
!! CAAACGTTTCTAGTTAACAT+TGG + chr3_3:71984924-71984943 None:intergenic 30.0%
CAATGTTAACTAGAAACGTT+TGG - chr3_3:71984922-71984941 Msa0469940:intron 30.0%
TCATAACACAACTTGAGATT+CGG + chr3_3:71985018-71985037 None:intergenic 30.0%
GTTGCAAAATGAAGAAATCA+TGG - chr3_3:71985154-71985173 Msa0469940:intron 30.0%
AAAATGAAGAAATCATGGAG+AGG - chr3_3:71985159-71985178 Msa0469940:intron 30.0%
AAATGAAGAAATCATGGAGA+GGG - chr3_3:71985160-71985179 Msa0469940:intron 30.0%
GTATTTGGTCAAAATCTGAT+TGG - chr3_3:71985192-71985211 Msa0469940:intron 30.0%
ATTTGGTCAAAATCTGATTG+GGG - chr3_3:71985194-71985213 Msa0469940:intron 30.0%
!! ATTTGGCTTAATTCCAGTTT+TGG + chr3_3:71985311-71985330 None:intergenic 30.0%
!!! TGTATAACTTTTCAAGTTGG+TGG + chr3_3:71985497-71985516 None:intergenic 30.0%
!!! ACGTGTATAACTTTTCAAGT+TGG + chr3_3:71985500-71985519 None:intergenic 30.0%
AGTCAATTGTTGGATATAGA+TGG + chr3_3:71985633-71985652 None:intergenic 30.0%
! TAAATTCCATTGCTCTGAAT+AGG - chr3_3:71985677-71985696 Msa0469940:intron 30.0%
! CTTTTCAGATTGTAATAGGA+AGG - chr3_3:71985873-71985892 Msa0469940:intron 30.0%
GTAATAGGAAGGTTAAGAAT+AGG - chr3_3:71985884-71985903 Msa0469940:intron 30.0%
TAATTTAGACTATGTACCTG+TGG - chr3_3:71986150-71986169 Msa0469940:intron 30.0%
ACATTGAGACAATTTAAGTG+TGG - chr3_3:71986181-71986200 Msa0469940:intron 30.0%
TAATTTAGACTATGTACCTG+TGG - chr3_3:71986150-71986169 Msa0469940:intron 30.0%
ATACAATTAAACCAAAGACG+TGG - chr3_3:71986302-71986321 Msa0469940:intron 30.0%
TACAATTAAACCAAAGACGT+GGG - chr3_3:71986303-71986322 Msa0469940:intron 30.0%
ATCAAAGAGTTACTCTTGAT+AGG + chr3_3:71986371-71986390 None:intergenic 30.0%
!!! GTGTAGTTTTTTGCACATTT+GGG + chr3_3:71986511-71986530 None:intergenic 30.0%
! TAAGTTCTGATAAAAACGCT+CGG + chr3_3:71986533-71986552 None:intergenic 30.0%
AATCTTATCACGAGTATCAA+AGG - chr3_3:71986561-71986580 Msa0469940:intron 30.0%
GGATACCTTATTATCTAAGT+TGG - chr3_3:71986582-71986601 Msa0469940:intron 30.0%
ATATGCAGACTTTGCAAAAT+AGG + chr3_3:71986654-71986673 None:intergenic 30.0%
TTATGGATTTGAGGAAATCA+TGG + chr3_3:71986858-71986877 None:intergenic 30.0%
!! CTCAAAGTTTGTTATATCCA+AGG - chr3_3:71986882-71986901 Msa0469940:intron 30.0%
! AATTAAAAGTACGTCTTCCT+TGG + chr3_3:71986902-71986921 None:intergenic 30.0%
! AGCTTTTCTCCCAAATATAT+TGG - chr3_3:71987318-71987337 Msa0469940:intron 30.0%
! GCTTTTCTCCCAAATATATT+GGG - chr3_3:71987319-71987338 Msa0469940:intron 30.0%
ACCTCGCCAAATTATAATTA+TGG - chr3_3:71987398-71987417 Msa0469940:intron 30.0%
TCCATAATTATAATTTGGCG+AGG + chr3_3:71987402-71987421 None:intergenic 30.0%
TTCCTTAACAAGTACACTTA+GGG + chr3_3:71987669-71987688 None:intergenic 30.0%
TTTCCTTAACAAGTACACTT+AGG + chr3_3:71987670-71987689 None:intergenic 30.0%
ACACACACTCCTATATATAT+AGG - chr3_3:71987854-71987873 Msa0469940:intron 30.0%
CACACACTCCTATATATATA+GGG - chr3_3:71987855-71987874 Msa0469940:intron 30.0%
ACACACTCCTATATATATAG+GGG - chr3_3:71987856-71987875 Msa0469940:intron 30.0%
GATACATCCCCTATATATAT+AGG + chr3_3:71987866-71987885 None:intergenic 30.0%
TATTTATCAAGAGAGTTGAG+AGG - chr3_3:71987902-71987921 Msa0469940:intron 30.0%
AGCCATTAGATCAAATTGTA+CGG - chr3_3:71987935-71987954 Msa0469940:intron 30.0%
ATCCGTACAATTTGATCTAA+TGG + chr3_3:71987940-71987959 None:intergenic 30.0%
TAAAGGAACAATCAATAGTC+AGG + chr3_3:71988222-71988241 None:intergenic 30.0%
CAATAGCTATAACTGAGTAA+AGG + chr3_3:71988239-71988258 None:intergenic 30.0%
TAAATTAACAATACTGCCCA+TGG - chr3_3:71988281-71988300 Msa0469940:intron 30.0%
GCTTGGAAATAAATTTCCAT+GGG + chr3_3:71988300-71988319 None:intergenic 30.0%
AGCTTGGAAATAAATTTCCA+TGG + chr3_3:71988301-71988320 None:intergenic 30.0%
TAAACATAGTGCAGAATTAC+AGG + chr3_3:71988340-71988359 None:intergenic 30.0%
!!! GGGTGTTTTAAAAGTTGAAT+TGG - chr3_3:71988425-71988444 Msa0469940:five_prime_UTR 30.0%
GCAAAAAGAATTCTTATTGC+TGG + chr3_3:71988459-71988478 None:intergenic 30.0%
ATCGTATGCAAAATACATGT+AGG + chr3_3:71988481-71988500 None:intergenic 30.0%
ATTTCATTCAACTAAGACGG+TGG - chr3_3:71981996-71982015 Msa0469940:three_prime_UTR 35.0%
!! TTTATTTTCACCCATCGGAA+CGG + chr3_3:71982044-71982063 None:intergenic 35.0%
! TCTAAAGCAAAGCAAAGCAA+AGG + chr3_3:71982277-71982296 None:intergenic 35.0%
TTATAGAATGAAAGGTGAGG+AGG + chr3_3:71982341-71982360 None:intergenic 35.0%
AAATTTGTGAGAATGAGGGA+TGG + chr3_3:71982408-71982427 None:intergenic 35.0%
CTATATTCTAGACAAGTGAG+TGG - chr3_3:71982849-71982868 Msa0469940:intron 35.0%
CGTAGAATAAGCAGTCAATT+TGG - chr3_3:71982951-71982970 Msa0469940:CDS 35.0%
TAACAGAGGGACAAAATAGT+TGG + chr3_3:71983084-71983103 None:intergenic 35.0%
! ACCAAAATGGTTGCCTTATT+TGG - chr3_3:71983423-71983442 Msa0469940:intron 35.0%
! ACCAAATAAGGCAACCATTT+TGG + chr3_3:71983427-71983446 None:intergenic 35.0%
AAATGGGTGTGAACCAAATA+AGG + chr3_3:71983439-71983458 None:intergenic 35.0%
! TTATTTGGTTCACACCCATT+TGG - chr3_3:71983438-71983457 Msa0469940:intron 35.0%
TTCATGGTGAAGAGTCATTT+GGG + chr3_3:71983503-71983522 None:intergenic 35.0%
TTTCATGGTGAAGAGTCATT+TGG + chr3_3:71983504-71983523 None:intergenic 35.0%
!! AGTGGAAGTATCATAAAACG+TGG - chr3_3:71983618-71983637 Msa0469940:intron 35.0%
AAACGTGGAATCATAATCAG+TGG - chr3_3:71983633-71983652 Msa0469940:intron 35.0%
!!! GGTTCAAACTTTTGAGTTCT+TGG - chr3_3:71983679-71983698 Msa0469940:intron 35.0%
ACAAATCATGTTACCATCAG+GGG + chr3_3:71983815-71983834 None:intergenic 35.0%
TAAAGGCTTAATTGCAGTGT+TGG - chr3_3:71983912-71983931 Msa0469940:intron 35.0%
AAACCGCACATTAAGAACTA+GGG + chr3_3:71983941-71983960 None:intergenic 35.0%
AAAACCGCACATTAAGAACT+AGG + chr3_3:71983942-71983961 None:intergenic 35.0%
! TAGTTCTTAATGTGCGGTTT+TGG - chr3_3:71983941-71983960 Msa0469940:intron 35.0%
TATAAAGGGGATAAACTAGG+GGG + chr3_3:71983968-71983987 None:intergenic 35.0%
AGCACAAAACACCTAAAACA+TGG + chr3_3:71984125-71984144 None:intergenic 35.0%
! AAAGTACCACTTAAGCTGAA+AGG - chr3_3:71984150-71984169 Msa0469940:intron 35.0%
AACTTTCCTTTCAGCTTAAG+TGG + chr3_3:71984159-71984178 None:intergenic 35.0%
AGCTGAAAGGAAAGTTCTAT+CGG - chr3_3:71984163-71984182 Msa0469940:intron 35.0%
AGACTAGACAAGATAGGATT+AGG - chr3_3:71984298-71984317 Msa0469940:intron 35.0%
AGCACCTATAGTAGAAAAGT+TGG - chr3_3:71984350-71984369 Msa0469940:intron 35.0%
TGGTAGAAAATAGGCTTAGA+TGG - chr3_3:71984370-71984389 Msa0469940:intron 35.0%
GAAAATAGGCTTAGATGGTT+TGG - chr3_3:71984375-71984394 Msa0469940:intron 35.0%
AAGAAGAGTAGATCAAATGG+AGG - chr3_3:71984431-71984450 Msa0469940:intron 35.0%
AGATTTAGAGGTCAATGAGT+TGG - chr3_3:71984515-71984534 Msa0469940:intron 35.0%
! CAATGAGTTGGATCCAAATA+TGG - chr3_3:71984527-71984546 Msa0469940:intron 35.0%
CTACCTAATAATAAGAGACG+AGG - chr3_3:71984755-71984774 Msa0469940:intron 35.0%
GATCCTCGTCTCTTATTATT+AGG + chr3_3:71984761-71984780 None:intergenic 35.0%
! ACGAGGATCAGTTCTTTTAT+AGG - chr3_3:71984772-71984791 Msa0469940:intron 35.0%
AGAAACGTTTGGACATGATT+TGG - chr3_3:71984933-71984952 Msa0469940:intron 35.0%
GAAACGTTTGGACATGATTT+GGG - chr3_3:71984934-71984953 Msa0469940:intron 35.0%
ATGAATCGTTTGAATGTGCA+TGG - chr3_3:71985086-71985105 Msa0469940:intron 35.0%
ATACGTCGTGAACTTTAGAT+GGG - chr3_3:71985112-71985131 Msa0469940:intron 35.0%
TTTGGTCAAAATCTGATTGG+GGG - chr3_3:71985195-71985214 Msa0469940:intron 35.0%
ATTGGGATCTTTACTACGAT+CGG - chr3_3:71985358-71985377 Msa0469940:intron 35.0%
CAAATCCTAGGCAATTACTT+AGG + chr3_3:71985439-71985458 None:intergenic 35.0%
CTAAGTAATTGCCTAGGATT+TGG - chr3_3:71985437-71985456 Msa0469940:intron 35.0%
!! TAAAGCTAGTCTTGATGATC+AGG + chr3_3:71985592-71985611 None:intergenic 35.0%
TGTTGGATATAGATGGATCA+TGG + chr3_3:71985626-71985645 None:intergenic 35.0%
! CACTCTAAGAAGTCAATTGT+TGG + chr3_3:71985643-71985662 None:intergenic 35.0%
! CAACAATTGACTTCTTAGAG+TGG - chr3_3:71985641-71985660 Msa0469940:intron 35.0%
ATATGTCCTATTCAGAGCAA+TGG + chr3_3:71985686-71985705 None:intergenic 35.0%
AAGCTATTTGCCATCAAAGA+TGG + chr3_3:71985730-71985749 None:intergenic 35.0%
ATATCTATTCCTTGGACAGT+AGG + chr3_3:71985755-71985774 None:intergenic 35.0%
TAGCAACATGCAAATATGAC+AGG - chr3_3:71985795-71985814 Msa0469940:intron 35.0%
AAGTAACATAACGAGGAGAA+AGG - chr3_3:71985831-71985850 Msa0469940:intron 35.0%
GAAGGTTAAGAATAGGAAGT+CGG - chr3_3:71985891-71985910 Msa0469940:intron 35.0%
AAGGTTAAGAATAGGAAGTC+GGG - chr3_3:71985892-71985911 Msa0469940:intron 35.0%
GCATTTGCAATCAATGTAAG+TGG - chr3_3:71985947-71985966 Msa0469940:intron 35.0%
TTTGCAATCAATGTAAGTGG+AGG - chr3_3:71985950-71985969 Msa0469940:intron 35.0%
TAGACTTGCAATGCACATAT+AGG - chr3_3:71986007-71986026 Msa0469940:intron 35.0%
! GATCAAGATAGTCTTAAGTG+TGG - chr3_3:71986101-71986120 Msa0469940:intron 35.0%
! AAGATAGTCTTAAGTGTGGA+AGG - chr3_3:71986105-71986124 Msa0469940:intron 35.0%
TGAGACAATTTAAGTGTGGA+AGG - chr3_3:71986185-71986204 Msa0469940:intron 35.0%
TCAAGGAATGAAAAACCTGA+AGG - chr3_3:71986328-71986347 Msa0469940:intron 35.0%
CAAGGAATGAAAAACCTGAA+GGG - chr3_3:71986329-71986348 Msa0469940:intron 35.0%
AAGGAATGAAAAACCTGAAG+GGG - chr3_3:71986330-71986349 Msa0469940:intron 35.0%
GATTACCTATTAGACAATCC+TGG - chr3_3:71986388-71986407 Msa0469940:intron 35.0%
TCTATGCAATTCTATCAGTC+TGG + chr3_3:71986417-71986436 None:intergenic 35.0%
ACACACACACTATTGAGATT+TGG - chr3_3:71986446-71986465 Msa0469940:intron 35.0%
TGAGCAAGTCTACAACATAA+TGG - chr3_3:71986477-71986496 Msa0469940:intron 35.0%
!!! GGTGTAGTTTTTTGCACATT+TGG + chr3_3:71986512-71986531 None:intergenic 35.0%
!! AACCATACGAAAAGCACTTA+AGG + chr3_3:71986821-71986840 None:intergenic 35.0%
! TTCTTTAGGTGCTTTTCGTA+TGG + chr3_3:71986930-71986949 None:intergenic 35.0%
!!! CAATGCAAACATGCTACTTT+TGG + chr3_3:71987024-71987043 None:intergenic 35.0%
CAAAAGTAGCATGTTTGCAT+TGG - chr3_3:71987022-71987041 Msa0469940:intron 35.0%
! TACCCTAAGTGTACTTGTTA+AGG - chr3_3:71987664-71987683 Msa0469940:intron 35.0%
CAAAAGTAGTAGGTTTGCAT+TGG - chr3_3:71987691-71987710 Msa0469940:intron 35.0%
ATGATGCTATATTTGGATCC+TGG - chr3_3:71988169-71988188 Msa0469940:intron 35.0%
AGAACAAAAGGATAACAGCT+TGG + chr3_3:71988317-71988336 None:intergenic 35.0%
CAGAATTACAGGAGAACAAA+AGG + chr3_3:71988329-71988348 None:intergenic 35.0%
!!! CAACTTTTAAAACACCCGTA+TGG + chr3_3:71988422-71988441 None:intergenic 35.0%
ATCAATGTGATTTCTCGGGT+CGG + chr3_3:71981917-71981936 None:intergenic 40.0%
CAAAAGAGGAGTAAACGAAG+CGG + chr3_3:71982135-71982154 None:intergenic 40.0%
! TTCGTTTACTCCTCTTTTGC+CGG - chr3_3:71982136-71982155 Msa0469940:three_prime_UTR 40.0%
CTCTTGCATGAATGACTGTT+TGG - chr3_3:71982454-71982473 Msa0469940:intron 40.0%
ACAAGAACTTAGACGGTCAA+TGG - chr3_3:71982764-71982783 Msa0469940:intron 40.0%
AGAATATAGAGTCGGCTACA+TGG + chr3_3:71982838-71982857 None:intergenic 40.0%
! TTCATGTTTGTTGCTCACTG+TGG + chr3_3:71983284-71983303 None:intergenic 40.0%
GTCCTCCAAATACTCATTCT+AGG - chr3_3:71983377-71983396 Msa0469940:intron 40.0%
TGCCTAGAATGAGTATTTGG+AGG + chr3_3:71983382-71983401 None:intergenic 40.0%
! ACCCATTTGGAACTATGTTC+TGG - chr3_3:71983451-71983470 Msa0469940:intron 40.0%
GCCAGAACATAGTTCCAAAT+GGG + chr3_3:71983455-71983474 None:intergenic 40.0%
TGCCAGAACATAGTTCCAAA+TGG + chr3_3:71983456-71983475 None:intergenic 40.0%
TCATGGTGAAGAGTCATTTG+GGG + chr3_3:71983502-71983521 None:intergenic 40.0%
AGAAAAGGAACCAATGTCTG+TGG + chr3_3:71983555-71983574 None:intergenic 40.0%
!! TTCCTTTTCTAGCACACAAG+TGG - chr3_3:71983565-71983584 Msa0469940:intron 40.0%
AACCACTTGTGTGCTAGAAA+AGG + chr3_3:71983570-71983589 None:intergenic 40.0%
CTCAAAAGTTTGAACCCCTT+GGG + chr3_3:71983675-71983694 None:intergenic 40.0%
ACTCAAAAGTTTGAACCCCT+TGG + chr3_3:71983676-71983695 None:intergenic 40.0%
TTCAATTGAACCCCCTCAAA+AGG - chr3_3:71983779-71983798 Msa0469940:intron 40.0%
TCAATTGAACCCCCTCAAAA+GGG - chr3_3:71983780-71983799 Msa0469940:intron 40.0%
AACCGCACATTAAGAACTAG+GGG + chr3_3:71983940-71983959 None:intergenic 40.0%
ATAAAGGGGATAAACTAGGG+GGG + chr3_3:71983967-71983986 None:intergenic 40.0%
AATGCAACGTCAACACCTTA+TGG + chr3_3:71984030-71984049 None:intergenic 40.0%
CACTTACTTTACTCTCGTGT+TGG + chr3_3:71984242-71984261 None:intergenic 40.0%
CGAGAGTAAAGTAAGTGTAG+CGG - chr3_3:71984245-71984264 Msa0469940:intron 40.0%
GTGGTAAGACTAGACAAGAT+AGG - chr3_3:71984292-71984311 Msa0469940:intron 40.0%
TCTTCTTACAACGGCATCTA+CGG + chr3_3:71984418-71984437 None:intergenic 40.0%
TGACAAGTCATTGTAGCTAC+TGG + chr3_3:71984878-71984897 None:intergenic 40.0%
! GCTACAATGACTTGTCATTG+TGG - chr3_3:71984881-71984900 Msa0469940:intron 40.0%
CTAGTTAACATTGGCACATG+TGG + chr3_3:71984915-71984934 None:intergenic 40.0%
! GACATGATTTGGGTCTCAAA+TGG - chr3_3:71984944-71984963 Msa0469940:intron 40.0%
TTTGGGTCTCAAATGGTTAG+TGG - chr3_3:71984951-71984970 Msa0469940:intron 40.0%
GATACGTCGTGAACTTTAGA+TGG - chr3_3:71985111-71985130 Msa0469940:intron 40.0%
TACGTCGTGAACTTTAGATG+GGG - chr3_3:71985113-71985132 Msa0469940:intron 40.0%
TTGGGATCTTTACTACGATC+GGG - chr3_3:71985359-71985378 Msa0469940:intron 40.0%
TCCTACCTAAGTAATTGCCT+AGG - chr3_3:71985431-71985450 Msa0469940:intron 40.0%
TCCTAGGCAATTACTTAGGT+AGG + chr3_3:71985435-71985454 None:intergenic 40.0%
AGTAATTGCCTAGGATTTGG+AGG - chr3_3:71985440-71985459 Msa0469940:intron 40.0%
GTAATTGCCTAGGATTTGGA+GGG - chr3_3:71985441-71985460 Msa0469940:intron 40.0%
! CAATTGACTTCTTAGAGTGG+AGG - chr3_3:71985644-71985663 Msa0469940:intron 40.0%
TTCTTAGAGTGGAGGAACAA+GGG - chr3_3:71985652-71985671 Msa0469940:intron 40.0%
CTATTTGCCATCAAAGATGG+CGG + chr3_3:71985727-71985746 None:intergenic 40.0%
GAGCTCAAAGTAACATAACG+AGG - chr3_3:71985824-71985843 Msa0469940:intron 40.0%
GATTGCAAATGCAACACCTA+TGG + chr3_3:71985939-71985958 None:intergenic 40.0%
! ATCAATGTAAGTGGAGGCAT+AGG - chr3_3:71985956-71985975 Msa0469940:intron 40.0%
!! TCTTGAACCTAGGGTATTGT+TGG - chr3_3:71986040-71986059 Msa0469940:intron 40.0%
CTCAATGTCTTAGTTTCCAC+AGG + chr3_3:71986169-71986188 None:intergenic 40.0%
CTCAATGTCTTAGTTTCCAC+AGG + chr3_3:71986169-71986188 None:intergenic 40.0%
ACTTCTGTAATTTCCCCTTC+AGG + chr3_3:71986346-71986365 None:intergenic 40.0%
CACACACTATTGAGATTTGG+AGG - chr3_3:71986449-71986468 Msa0469940:intron 40.0%
! CTCCTTAAGTGCTTTTCGTA+TGG - chr3_3:71986816-71986835 Msa0469940:intron 40.0%
GAATGTTCTCGTCTGTTTGA+TGG - chr3_3:71987518-71987537 Msa0469940:intron 40.0%
!! AATGCTAAAGAGTGCCCTTA+GGG + chr3_3:71987809-71987828 None:intergenic 40.0%
!! AAATGCTAAAGAGTGCCCTT+AGG + chr3_3:71987810-71987829 None:intergenic 40.0%
! TATGGCCTATGGTAGTGAAT+AGG - chr3_3:71987973-71987992 Msa0469940:intron 40.0%
ATGCTCCTATTCACTACCAT+AGG + chr3_3:71987981-71988000 None:intergenic 40.0%
!! CTTTTGTTTCCAGATTGTGC+AGG - chr3_3:71988135-71988154 Msa0469940:intron 40.0%
ATTCAGAATCCTGCACAATC+TGG + chr3_3:71988147-71988166 None:intergenic 40.0%
TATATTTGGATCCTGGTTCC+TGG - chr3_3:71988176-71988195 Msa0469940:intron 40.0%
CGGGTTGTGTTTAAACCACA+AGG + chr3_3:71981892-71981911 None:intergenic 45.0%
TCAATGTGATTTCTCGGGTC+GGG + chr3_3:71981916-71981935 None:intergenic 45.0%
!! GCATCGACGTCATACTTTTG+AGG + chr3_3:71982079-71982098 None:intergenic 45.0%
AGTATGACGTCGATGCCAAA+TGG - chr3_3:71982083-71982102 Msa0469940:three_prime_UTR 45.0%
GTATGACGTCGATGCCAAAT+GGG - chr3_3:71982084-71982103 Msa0469940:three_prime_UTR 45.0%
!! GAAGGTACTGACTGAAAAGG+AGG + chr3_3:71982177-71982196 None:intergenic 45.0%
!! GGAGAAGGTACTGACTGAAA+AGG + chr3_3:71982180-71982199 None:intergenic 45.0%
AATCTACGGAGAGAGAGAGT+TGG + chr3_3:71982201-71982220 None:intergenic 45.0%
TAGACAAGTGAGTGGGAAAG+AGG - chr3_3:71982857-71982876 Msa0469940:intron 45.0%
AGGACATGTCAAACACAGCT+GGG + chr3_3:71983362-71983381 None:intergenic 45.0%
CACCATGAAATCTGAGCATG+CGG - chr3_3:71983514-71983533 Msa0469940:intron 45.0%
TTCCGCATGCTCAGATTTCA+TGG + chr3_3:71983519-71983538 None:intergenic 45.0%
! TCAGTGGCGTATCTAGAATC+TGG - chr3_3:71983649-71983668 Msa0469940:intron 45.0%
! GTATCTAGAATCTGGCCCAA+GGG - chr3_3:71983657-71983676 Msa0469940:intron 45.0%
! TATCTAGAATCTGGCCCAAG+GGG - chr3_3:71983658-71983677 Msa0469940:intron 45.0%
AATCATGTTACCATCAGGGG+CGG + chr3_3:71983812-71983831 None:intergenic 45.0%
! TCCCCCTAGTTCTTAATGTG+CGG - chr3_3:71983935-71983954 Msa0469940:intron 45.0%
ACCGCACATTAAGAACTAGG+GGG + chr3_3:71983939-71983958 None:intergenic 45.0%
ACCGGCAATGTTGTATGGTA+CGG - chr3_3:71984197-71984216 Msa0469940:intron 45.0%
TCCGTACCATACAACATTGC+CGG + chr3_3:71984201-71984220 None:intergenic 45.0%
TGTTGTATGGTACGGAGTGT+TGG - chr3_3:71984205-71984224 Msa0469940:intron 45.0%
! GTTGTATGGTACGGAGTGTT+GGG - chr3_3:71984206-71984225 Msa0469940:intron 45.0%
! AAGTAAGTGTAGCGGAGATG+AGG - chr3_3:71984253-71984272 Msa0469940:intron 45.0%
TGACACCATTAGAGAGAGAG+TGG - chr3_3:71984323-71984342 Msa0469940:intron 45.0%
GACACCATTAGAGAGAGAGT+GGG - chr3_3:71984324-71984343 Msa0469940:intron 45.0%
ACACCATTAGAGAGAGAGTG+GGG - chr3_3:71984325-71984344 Msa0469940:intron 45.0%
CTTCTTACAACGGCATCTAC+GGG + chr3_3:71984417-71984436 None:intergenic 45.0%
AGATCAAATGGAGGAGAGTC+AGG - chr3_3:71984440-71984459 Msa0469940:intron 45.0%
GAGGAGAGTCAGGTTAAAAG+AGG - chr3_3:71984450-71984469 Msa0469940:intron 45.0%
! AAGCCTTATCCCACTAAGTG+GGG + chr3_3:71984596-71984615 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG + chr3_3:71984597-71984616 None:intergenic 45.0%
GGGGATGAAGTAGATCAATC+TGG - chr3_3:71985132-71985151 Msa0469940:intron 45.0%
AGAGGGAGAAGATGCGTATT+TGG - chr3_3:71985177-71985196 Msa0469940:intron 45.0%
AGGGAGGTAAAGTGTGTTGT+TGG - chr3_3:71985232-71985251 Msa0469940:intron 45.0%
! GGGAGGTAAAGTGTGTTGTT+GGG - chr3_3:71985233-71985252 Msa0469940:intron 45.0%
! GGAGGTAAAGTGTGTTGTTG+GGG - chr3_3:71985234-71985253 Msa0469940:intron 45.0%
! GAGGTAAAGTGTGTTGTTGG+GGG - chr3_3:71985235-71985254 Msa0469940:intron 45.0%
! AGGTAAAGTGTGTTGTTGGG+GGG - chr3_3:71985236-71985255 Msa0469940:intron 45.0%
AAAATTAGGGGGGCCAAAAC+TGG - chr3_3:71985295-71985314 Msa0469940:intron 45.0%
GATCTTTACTACGATCGGGA+GGG - chr3_3:71985363-71985382 Msa0469940:intron 45.0%
ATCTTTACTACGATCGGGAG+GGG - chr3_3:71985364-71985383 Msa0469940:intron 45.0%
CTTCTTAGAGTGGAGGAACA+AGG - chr3_3:71985651-71985670 Msa0469940:intron 45.0%
! TCAAAGATGGCGGCAAACAA+TGG + chr3_3:71985717-71985736 None:intergenic 45.0%
TTGTTTGCCGCCATCTTTGA+TGG - chr3_3:71985717-71985736 Msa0469940:intron 45.0%
ATAGCTTCACCTACTGTCCA+AGG - chr3_3:71985743-71985762 Msa0469940:intron 45.0%
TGCAATGCACATATAGGAGC+AGG - chr3_3:71986013-71986032 Msa0469940:intron 45.0%
GCAATGCACATATAGGAGCA+GGG - chr3_3:71986014-71986033 Msa0469940:intron 45.0%
!! TGAACCTAGGGTATTGTTGG+TGG - chr3_3:71986043-71986062 Msa0469940:intron 45.0%
GGCAACCAGGATTGTCTAAT+AGG + chr3_3:71986396-71986415 None:intergenic 45.0%
ATTCTATCAGTCTGGCAACC+AGG + chr3_3:71986409-71986428 None:intergenic 45.0%
TTGACCTGAGCTCGAAACTT+TGG - chr3_3:71986750-71986769 Msa0469940:intron 45.0%
AGTACCAAAGTTTCGAGCTC+AGG + chr3_3:71986757-71986776 None:intergenic 45.0%
TTCCTTAACCATTGCCCTGA+GGG + chr3_3:71987000-71987019 None:intergenic 45.0%
AATGCTAACCATTGCCCTTG+GGG + chr3_3:71987140-71987159 None:intergenic 45.0%
GAATGCTAACCATTGCCCTT+GGG + chr3_3:71987141-71987160 None:intergenic 45.0%
AGAATGCTAACCATTGCCCT+TGG + chr3_3:71987142-71987161 None:intergenic 45.0%
!! GCTTCTATTGCTTTTGGTGC+TGG - chr3_3:71987470-71987489 Msa0469940:intron 45.0%
!!! TATTGCTTTTGGTGCTGGAG+TGG - chr3_3:71987475-71987494 Msa0469940:intron 45.0%
!!! ATTGCTTTTGGTGCTGGAGT+GGG - chr3_3:71987476-71987495 Msa0469940:intron 45.0%
AAGACAAATCCCACCTGAGT+AGG + chr3_3:71987608-71987627 None:intergenic 45.0%
TCGTCTTAACCAATGCCCTA+AGG - chr3_3:71987791-71987810 Msa0469940:intron 45.0%
CGTCTTAACCAATGCCCTAA+GGG - chr3_3:71987792-71987811 Msa0469940:intron 45.0%
TGTGTGTGTGTGTGTGTGTA+GGG + chr3_3:71987833-71987852 None:intergenic 45.0%
TAGGGGATGTATCAAGTGTG+AGG - chr3_3:71987873-71987892 Msa0469940:intron 45.0%
TGAGTGTCAACAGCCTAAGT+TGG - chr3_3:71988038-71988057 Msa0469940:intron 45.0%
!! GCCTAAGTTGGTGTAGTAAC+TGG - chr3_3:71988050-71988069 Msa0469940:intron 45.0%
GCCAGTTACTACACCAACTT+AGG + chr3_3:71988054-71988073 None:intergenic 45.0%
AATGCTCTGTTTCACTGTCC+AGG + chr3_3:71988197-71988216 None:intergenic 45.0%
!! AAAAAAATAAAAATCTAAAT+TGG - chr3_3:71986615-71986634 Msa0469940:intron 5.0%
! TTTCATTGAGAGCACGCACG+CGG - chr3_3:71981936-71981955 Msa0469940:three_prime_UTR 50.0%
ATCAAGGCAGGCATCCCATT+TGG + chr3_3:71982101-71982120 None:intergenic 50.0%
AAGAGGAGTAAACGAAGCGG+CGG + chr3_3:71982132-71982151 None:intergenic 50.0%
! TCCTCTTTTGCCGGTGCTTT+CGG - chr3_3:71982145-71982164 Msa0469940:three_prime_UTR 50.0%
GAGGACATGTCAAACACAGC+TGG + chr3_3:71983363-71983382 None:intergenic 50.0%
TGTTCTGGCAAACAGATCGC+AGG - chr3_3:71983466-71983485 Msa0469940:intron 50.0%
! GGTGAAGAGTCATTTGGGGT+CGG + chr3_3:71983498-71983517 None:intergenic 50.0%
! CGTATCTAGAATCTGGCCCA+AGG - chr3_3:71983656-71983675 Msa0469940:intron 50.0%
CTATCGGACATCAGTCAGAC+CGG - chr3_3:71984179-71984198 Msa0469940:intron 50.0%
GTCAGACCGGCAATGTTGTA+TGG - chr3_3:71984192-71984211 Msa0469940:intron 50.0%
CACCATTAGAGAGAGAGTGG+GGG - chr3_3:71984326-71984345 Msa0469940:intron 50.0%
TACCCCCACTCTCTCTCTAA+TGG + chr3_3:71984331-71984350 None:intergenic 50.0%
GGTCGGCTACATGGATCAAA+TGG + chr3_3:71984575-71984594 None:intergenic 50.0%
CTTATCCCACTAAGTGGGGT+CGG + chr3_3:71984592-71984611 None:intergenic 50.0%
! CCAAGCCTTATCCCACTAAG+TGG + chr3_3:71984598-71984617 None:intergenic 50.0%
CCACTTAGTGGGATAAGGCT+TGG - chr3_3:71984595-71984614 Msa0469940:intron 50.0%
GGGTCTCAAATGGTTAGTGG+AGG - chr3_3:71984954-71984973 Msa0469940:intron 50.0%
! GGTAAAGTGTGTTGTTGGGG+GGG - chr3_3:71985237-71985256 Msa0469940:intron 50.0%
! GTAAAGTGTGTTGTTGGGGG+GGG - chr3_3:71985238-71985257 Msa0469940:intron 50.0%
! TAAAGTGTGTTGTTGGGGGG+GGG - chr3_3:71985239-71985258 Msa0469940:intron 50.0%
GGATCTTTACTACGATCGGG+AGG - chr3_3:71985362-71985381 Msa0469940:intron 50.0%
ATAGGAAGTCGGGTCAGTGT+TGG - chr3_3:71985902-71985921 Msa0469940:intron 50.0%
! GTTGGTGGAGGATAGTCCAT+AGG - chr3_3:71985920-71985939 Msa0469940:intron 50.0%
GCAAGTCTATCATCGCCAGT+TGG + chr3_3:71985996-71986015 None:intergenic 50.0%
AGCAGGGTTGTCTTGAACCT+AGG - chr3_3:71986030-71986049 Msa0469940:intron 50.0%
GCAGGGTTGTCTTGAACCTA+GGG - chr3_3:71986031-71986050 Msa0469940:intron 50.0%
CACACCACCAACAATACCCT+AGG + chr3_3:71986050-71986069 None:intergenic 50.0%
AACCAAAGACGTGGGTGTCA+AGG - chr3_3:71986311-71986330 Msa0469940:intron 50.0%
TTCCTTGACACCCACGTCTT+TGG + chr3_3:71986316-71986335 None:intergenic 50.0%
TTCGAGCTCAGGTCAAAGTC+AGG + chr3_3:71986746-71986765 None:intergenic 50.0%
TCTTGCTAACCATTGCCCTC+AGG - chr3_3:71986982-71987001 Msa0469940:intron 50.0%
CTTGCTAACCATTGCCCTCA+GGG - chr3_3:71986983-71987002 Msa0469940:intron 50.0%
CTTCCTTAACCATTGCCCTG+AGG + chr3_3:71987001-71987020 None:intergenic 50.0%
! CGCTGGGCTTCTATTGCTTT+TGG - chr3_3:71987464-71987483 Msa0469940:intron 50.0%
!! TTTGGTGCTGGAGTGGGAAT+AGG - chr3_3:71987482-71987501 Msa0469940:intron 50.0%
TTCGGTTGTGCAAGCTTTGC+TGG + chr3_3:71987548-71987567 None:intergenic 50.0%
AGCAAAGCTTGCACAACCGA+AGG - chr3_3:71987547-71987566 Msa0469940:intron 50.0%
TGTGCTACCTCTGAGTCCTT+CGG + chr3_3:71987566-71987585 None:intergenic 50.0%
CTCAGAGGTAGCACAACCTA+AGG - chr3_3:71987571-71987590 Msa0469940:intron 50.0%
!! AAAGAGTGCCCTTAGGGCAT+TGG + chr3_3:71987803-71987822 None:intergenic 50.0%
GTGTGTGTGTGTGTGTGTGT+AGG + chr3_3:71987834-71987853 None:intergenic 50.0%
TGTTTCACTGTCCAGGAACC+AGG + chr3_3:71988190-71988209 None:intergenic 50.0%
TGTGATTTCTCGGGTCGGGT+CGG + chr3_3:71981912-71981931 None:intergenic 55.0%
TCCAACTCGTTCCGTTCCGA+TGG - chr3_3:71982030-71982049 Msa0469940:three_prime_UTR 55.0%
CCAACTCGTTCCGTTCCGAT+GGG - chr3_3:71982031-71982050 Msa0469940:three_prime_UTR 55.0%
! TCTTTTGCCGGTGCTTTCGG+CGG - chr3_3:71982148-71982167 Msa0469940:three_prime_UTR 55.0%
CGGAGAGAGAGAGTTGGAGA+AGG + chr3_3:71982195-71982214 None:intergenic 55.0%
GGCAAACAGATCGCAGGTCT+TGG - chr3_3:71983472-71983491 Msa0469940:intron 55.0%
!! CGGAGATAGCCCTTTTGAGG+GGG + chr3_3:71983792-71983811 None:intergenic 55.0%
! GCGGAGATAGCCCTTTTGAG+GGG + chr3_3:71983793-71983812 None:intergenic 55.0%
! GGCGGAGATAGCCCTTTTGA+GGG + chr3_3:71983794-71983813 None:intergenic 55.0%
!! GTATGGTACGGAGTGTTGGG+CGG - chr3_3:71984209-71984228 Msa0469940:intron 55.0%
ACTAAGTGGGGTCGGCTACA+TGG + chr3_3:71984584-71984603 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG - chr3_3:71984583-71984602 Msa0469940:intron 55.0%
TGTAGCCGACCCCACTTAGT+GGG - chr3_3:71984584-71984603 Msa0469940:intron 55.0%
CGACCCCACTTAGTGGGATA+AGG - chr3_3:71984590-71984609 Msa0469940:intron 55.0%
TGGGGGACTGCGAAATCAGA+AGG - chr3_3:71985212-71985231 Msa0469940:intron 55.0%
GGGGGACTGCGAAATCAGAA+GGG - chr3_3:71985213-71985232 Msa0469940:intron 55.0%
GGACTGCGAAATCAGAAGGG+AGG - chr3_3:71985216-71985235 Msa0469940:intron 55.0%
! AAAGTGTGTTGTTGGGGGGG+GGG - chr3_3:71985240-71985259 Msa0469940:intron 55.0%
CTGCTAGCCCTCCAAATCCT+AGG + chr3_3:71985451-71985470 None:intergenic 55.0%
!! AGTGGAGGCATAGGTGCTGA+AGG - chr3_3:71985965-71985984 Msa0469940:intron 55.0%
AACCATTGCCCTCAGGGCAA+TGG - chr3_3:71986989-71987008 Msa0469940:intron 55.0%
AACCATTGCCCTGAGGGCAA+TGG + chr3_3:71986994-71987013 None:intergenic 55.0%
TGCCCTCAGGGCAATGGTTA+AGG - chr3_3:71986995-71987014 Msa0469940:intron 55.0%
ATCCAATGCCCCAAGGGCAA+TGG - chr3_3:71987129-71987148 Msa0469940:intron 55.0%
AACCATTGCCCTTGGGGCAT+TGG + chr3_3:71987134-71987153 None:intergenic 55.0%
ATAGAAGCCCAGCGAGTCTG+AGG + chr3_3:71987458-71987477 None:intergenic 55.0%
TGCACAACCGAAGGACTCAG+AGG - chr3_3:71987556-71987575 Msa0469940:intron 55.0%
AGCACAACCTAAGGCCTCAG+AGG - chr3_3:71987580-71987599 Msa0469940:intron 55.0%
TCAGAGGCTCCTACTCAGGT+GGG - chr3_3:71987596-71987615 Msa0469940:intron 55.0%
GTGATTTCTCGGGTCGGGTC+GGG + chr3_3:71981911-71981930 None:intergenic 60.0%
CCCATCGGAACGGAACGAGT+TGG + chr3_3:71982034-71982053 None:intergenic 60.0%
GGAGTAAACGAAGCGGCGGA+CGG + chr3_3:71982128-71982147 None:intergenic 60.0%
!! GCCGAAAGCACCGGCAAAAG+AGG + chr3_3:71982149-71982168 None:intergenic 60.0%
! GGGCGGAGATAGCCCTTTTG+AGG + chr3_3:71983795-71983814 None:intergenic 60.0%
CGGAGATGAGGATGTTGCGC+TGG - chr3_3:71984265-71984284 Msa0469940:intron 60.0%
AGGATGTTGCGCTGGACGAG+TGG - chr3_3:71984273-71984292 Msa0469940:intron 60.0%
! AAGTGTGTTGTTGGGGGGGG+GGG - chr3_3:71985241-71985260 Msa0469940:intron 60.0%
! GGAAGTCGGGTCAGTGTTGG+TGG - chr3_3:71985905-71985924 Msa0469940:intron 60.0%
!! AGTCGGGTCAGTGTTGGTGG+AGG - chr3_3:71985908-71985927 Msa0469940:intron 60.0%
!! GGAGGCATAGGTGCTGAAGG+TGG - chr3_3:71985968-71985987 Msa0469940:intron 60.0%
GTGCTGAAGGTGGAGCCAAC+TGG - chr3_3:71985978-71985997 Msa0469940:intron 60.0%
TCCCCTCATCCAATGCCCCA+AGG - chr3_3:71987122-71987141 Msa0469940:intron 60.0%
!! CCCTTGGGGCATTGGATGAG+GGG + chr3_3:71987126-71987145 None:intergenic 60.0%
CCCCTCATCCAATGCCCCAA+GGG - chr3_3:71987123-71987142 Msa0469940:intron 60.0%
!! GCCCTTGGGGCATTGGATGA+GGG + chr3_3:71987127-71987146 None:intergenic 60.0%
!! TGCCCTTGGGGCATTGGATG+AGG + chr3_3:71987128-71987147 None:intergenic 60.0%
TAGGGAGTCCTCAGACTCGC+TGG - chr3_3:71987447-71987466 Msa0469940:intron 60.0%
AGGGAGTCCTCAGACTCGCT+GGG - chr3_3:71987448-71987467 Msa0469940:intron 60.0%
!! GTAGGAGCCTCTGAGGCCTT+AGG + chr3_3:71987590-71987609 None:intergenic 60.0%
CACCTGAGTAGGAGCCTCTG+AGG + chr3_3:71987597-71987616 None:intergenic 60.0%
CTCAGAGGCTCCTACTCAGG+TGG - chr3_3:71987595-71987614 Msa0469940:intron 60.0%
GCGGACGGTGAGATCAAGGC+AGG + chr3_3:71982113-71982132 None:intergenic 65.0%
AGCGGCGGACGGTGAGATCA+AGG + chr3_3:71982117-71982136 None:intergenic 65.0%
! GAGGAGACCGCCGAAAGCAC+CGG + chr3_3:71982158-71982177 None:intergenic 65.0%
AGGGCTATCTCCGCCCCTGA+TGG - chr3_3:71983799-71983818 Msa0469940:intron 65.0%
! AGTGTGTTGTTGGGGGGGGG+GGG - chr3_3:71985242-71985261 Msa0469940:intron 65.0%
GGCCTCAGAGGCTCCTACTC+AGG - chr3_3:71987592-71987611 Msa0469940:intron 65.0%
! GTGTGTTGTTGGGGGGGGGG+GGG - chr3_3:71985243-71985262 Msa0469940:intron 70.0%
! TGTGTTGTTGGGGGGGGGGG+GGG - chr3_3:71985244-71985263 Msa0469940:intron 70.0%
!! GTGGGCTGGGCGAGGCCTTG+TGG - chr3_3:71981874-71981893 Msa0469940:three_prime_UTR 75.0%
! GTGTTGTTGGGGGGGGGGGG+GGG - chr3_3:71985245-71985264 Msa0469940:intron 75.0%
TGTTGTTGGGGGGGGGGGGG+GGG - chr3_3:71985246-71985265 Msa0469940:intron 75.0%
! GTTGTTGGGGGGGGGGGGGG+GGG - chr3_3:71985247-71985266 Msa0469940:intron 80.0%
! TTGTTGGGGGGGGGGGGGGG+GGG - chr3_3:71985248-71985267 Msa0469940:intron 80.0%
! TGTTGGGGGGGGGGGGGGGG+GGG - chr3_3:71985249-71985268 Msa0469940:intron 85.0%
! GTTGGGGGGGGGGGGGGGGG+GGG - chr3_3:71985250-71985269 Msa0469940:intron 90.0%
! TTGGGGGGGGGGGGGGGGGG+GGG - chr3_3:71985251-71985270 Msa0469940:intron 90.0%
! TGGGGGGGGGGGGGGGGGGG+GGG - chr3_3:71985252-71985271 Msa0469940:intron 95.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 71981868 71988598 71981868 ID=Msa0469940;Name=Msa0469940
chr3_3 mRNA 71981868 71988598 71981868 ID=Msa0469940-mRNA-1;Parent=Msa0469940;Name=Msa0469940-mRNA-1;_AED=0.03;_eAED=0.03;_QI=181|0.5|0.66|1|1|1|3|430|94
chr3_3 exon 71981868 71982318 71981868 ID=Msa0469940-mRNA-1:exon:17747;Parent=Msa0469940-mRNA-1
chr3_3 exon 71982889 71983016 71982889 ID=Msa0469940-mRNA-1:exon:17746;Parent=Msa0469940-mRNA-1
chr3_3 exon 71988282 71988598 71988282 ID=Msa0469940-mRNA-1:exon:17745;Parent=Msa0469940-mRNA-1
chr3_3 five_prime_UTR 71988418 71988598 71988418 ID=Msa0469940-mRNA-1:five_prime_utr;Parent=Msa0469940-mRNA-1
chr3_3 CDS 71988282 71988417 71988282 ID=Msa0469940-mRNA-1:cds;Parent=Msa0469940-mRNA-1
chr3_3 CDS 71982889 71983016 71982889 ID=Msa0469940-mRNA-1:cds;Parent=Msa0469940-mRNA-1
chr3_3 CDS 71982298 71982318 71982298 ID=Msa0469940-mRNA-1:cds;Parent=Msa0469940-mRNA-1
chr3_3 three_prime_UTR 71981868 71982297 71981868 ID=Msa0469940-mRNA-1:three_prime_utr;Parent=Msa0469940-mRNA-1
Gene Sequence

>Msa0469940

ATGGGTGAAAATAAAGAACAATTAATTCCTCAAAAGTATGACGTCGATGCCAAATGGGATGCCTGCCTTGATCTCACCGTCCGCCGCTTCGTTTACTCCTCTTTTGCCGGTGCTTTCGGCGGTCTCCTCCTTTTCAGGAGTCCTCAGACTCGCTGGGCTTCTATTGCTTTTGGTGCTGGAGTGGGAATAGGATCTGCATACACAGAATGTTCTCGTCTGTTTGATGGATCTCCAGCAAAGCTTGCACAACCGAAGGACTCAGAGATTGTGCAGGATTCTGAATAG

Protein sequence

>Msa0469940

MGENKEQLIPQKYDVDAKWDACLDLTVRRFVYSSFAGAFGGLLLFRSPQTRWASIAFGAGVGIGSAYTECSRLFDGSPAKLAQPKDSEIVQDSE*