AlfalfaGEDB | Msa0509640

M. sativa cultivar zhongmu-4 / Msa0509640

KEGG: -
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568
PFAM: PF00892.23

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0509640	XP_003601058.1	93.989	366	19	1	1	366	1	363	0.0	703

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0509640	sp\|Q9SUF1\|WTR31_ARATH	57.627	354	139	5	13	363	8	353	6.67e-146	421

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0509640	G7J316	93.989	366	19	1	1	366	1	363	0.0	703

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0273400	Msa0509640	0.810459	1.140880e-50	-8.615850e-47
Msa0313660	Msa0509640	0.806600	7.603570e-50	-8.615850e-47
Msa0369890	Msa0509640	0.977787	1.746475e-144	-8.615850e-47
Msa0417300	Msa0509640	0.929209	9.648262e-93	-8.615850e-47
Msa0464150	Msa0509640	0.987330	7.187883e-170	-8.615850e-47
Msa0509640	Msa1044520	-0.807840	4.152465e-50	-8.615850e-47
Msa0509640	Msa1162050	0.807881	4.070055e-50	-8.615850e-47
Msa0509640	Msa1197230	0.829978	3.802425e-55	-8.615850e-47
Msa0509640	Msa1264300	-0.815314	9.850552e-52	-8.615850e-47
Msa0509640	Msa1292560	0.822151	2.761772e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0509640	MtrunA17_Chr3g0114711	86.000	400	19	2	1	366	1	397	0.0	686
Msa0509640	MtrunA17_Chr3g0114731	63.818	351	121	4	15	365	16	360	1.52e-162	461
Msa0509640	MtrunA17_Chr3g0114691	49.584	361	173	3	5	363	8	361	6.21e-129	375
Msa0509640	MtrunA17_Chr1g0160171	51.253	359	161	4	13	366	12	361	6.95e-126	367
Msa0509640	MtrunA17_Chr1g0160181	52.890	346	159	3	19	362	20	363	3.68e-124	363
Msa0509640	MtrunA17_Chr3g0114701	51.913	366	157	5	10	363	2	360	1.14e-123	361
Msa0509640	MtrunA17_Chr1g0182291	47.801	341	173	3	11	350	9	345	3.31e-118	347
Msa0509640	MtrunA17_Chr7g0263101	46.491	342	174	3	18	355	14	350	3.45e-115	339
Msa0509640	MtrunA17_Chr7g0255561	45.245	347	169	4	1	337	1	336	1.68e-111	330
Msa0509640	MtrunA17_Chr7g0255581	45.245	347	169	4	1	337	1	336	1.68e-111	330

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0509640	AT4G08290.1	57.627	354	139	5	13	363	8	353	6.78e-147	421
Msa0509640	AT4G08300.1	50.000	362	162	4	10	365	3	351	5.75e-125	364
Msa0509640	AT1G44800.1	50.140	357	164	5	10	363	3	348	1.97e-124	363
Msa0509640	AT1G21890.1	49.724	362	165	4	13	359	6	365	4.61e-122	358
Msa0509640	AT2G37460.1	46.686	347	180	3	11	356	8	350	7.33e-116	342
Msa0509640	AT1G21890.2	50.000	312	145	2	13	315	6	315	9.07e-108	320
Msa0509640	AT2G39510.1	44.000	350	184	4	18	366	8	346	7.28e-107	318
Msa0509640	AT4G08290.2	59.766	256	97	4	13	265	8	260	1.15e-106	315
Msa0509640	AT5G07050.1	43.768	345	182	4	1	337	3	343	3.84e-102	307
Msa0509640	AT2G40900.1	43.478	345	187	3	10	353	2	339	8.63e-101	303

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Find 91 sgRNAs with CRISPR-Local

Find 247 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATAGGTGTTTCTAATTT+TGG	0.097188	3_4:-58106235	Msa0509640:CDS
AAGACACCCATTGTCATCTT+TGG	0.325604	3_4:+58105588	None:intergenic
AAGTGATGATCATACAAAGG+GGG	0.720906	3_4:+58102266	None:intergenic
AATAGAAAAGGTGAATTTGT+GGG	0.544421	3_4:+58103623	None:intergenic
AATTAGGCCAAAGATGACAA+TGG	0.598592	3_4:-58105595	Msa0509640:CDS
ACAAGTGATGATCATACAAA+GGG	0.529299	3_4:+58102264	None:intergenic
ACACGCAAACTCTCAAACAT+TGG	0.463592	3_4:-58103567	Msa0509640:CDS
ACTATATGGTCCTCTCTACA+CGG	0.654238	3_4:-58103234	Msa0509640:intron
ACTCTCAAACATTGGGTCTC+AGG	0.410947	3_4:-58103559	Msa0509640:CDS
AGATCAAGGATTTACTTTCT+TGG	0.355086	3_4:-58103975	Msa0509640:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GGTAATAAAATGAATAAGGC+AGG	-	chr3_4:58101871-58101890	Msa0509640:CDS	30.0%
TTTCAAAAATGAGTGCAAAG+GGG	+	chr3_4:58102032-58102051	None:intergenic	30.0%
CTTTCAAAAATGAGTGCAAA+GGG	+	chr3_4:58102033-58102052	None:intergenic	30.0%
ACATGTTTCATTCACTAACT+TGG	-	chr3_4:58102104-58102123	Msa0509640:intron	30.0%
AGAAAAGTGGTAATTAGCAT+AGG	+	chr3_4:58102454-58102473	None:intergenic	30.0%
TACAACTTTGCAGGAAAATT+AGG	-	chr3_4:58102474-58102493	Msa0509640:intron	30.0%
TCACGTTAATATAACTCAGT+TGG	-	chr3_4:58103038-58103057	Msa0509640:intron	30.0%
TTATTAGGTTTAAACCCACT+TGG	-	chr3_4:58103715-58103734	Msa0509640:CDS	30.0%
TATTAGGTTTAAACCCACTT+GGG	-	chr3_4:58103716-58103735	Msa0509640:CDS	30.0%
ATGTATTGTAACGTACCATT+TGG	-	chr3_4:58104067-58104086	Msa0509640:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_4	gene	58101844	58106263	58101844	ID=Msa0509640;Name=Msa0509640
chr3_4	mRNA	58101844	58106263	58101844	ID=Msa0509640-mRNA-1;Parent=Msa0509640;Name=Msa0509640-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0\|0\|0\|1\|1\|1\|7\|0\|366
chr3_4	exon	58106055	58106263	58106055	ID=Msa0509640-mRNA-1:exon:13453;Parent=Msa0509640-mRNA-1
chr3_4	exon	58105558	58105620	58105558	ID=Msa0509640-mRNA-1:exon:13452;Parent=Msa0509640-mRNA-1
chr3_4	exon	58103890	58104006	58103890	ID=Msa0509640-mRNA-1:exon:13451;Parent=Msa0509640-mRNA-1
chr3_4	exon	58103504	58103744	58103504	ID=Msa0509640-mRNA-1:exon:13450;Parent=Msa0509640-mRNA-1
chr3_4	exon	58103235	58103399	58103235	ID=Msa0509640-mRNA-1:exon:13449;Parent=Msa0509640-mRNA-1
chr3_4	exon	58102220	58102371	58102220	ID=Msa0509640-mRNA-1:exon:13448;Parent=Msa0509640-mRNA-1
chr3_4	exon	58101844	58101997	58101844	ID=Msa0509640-mRNA-1:exon:13447;Parent=Msa0509640-mRNA-1
chr3_4	CDS	58106055	58106263	58106055	ID=Msa0509640-mRNA-1:cds;Parent=Msa0509640-mRNA-1
chr3_4	CDS	58105558	58105620	58105558	ID=Msa0509640-mRNA-1:cds;Parent=Msa0509640-mRNA-1
chr3_4	CDS	58103890	58104006	58103890	ID=Msa0509640-mRNA-1:cds;Parent=Msa0509640-mRNA-1
chr3_4	CDS	58103504	58103744	58103504	ID=Msa0509640-mRNA-1:cds;Parent=Msa0509640-mRNA-1
chr3_4	CDS	58103235	58103399	58103235	ID=Msa0509640-mRNA-1:cds;Parent=Msa0509640-mRNA-1
chr3_4	CDS	58102220	58102371	58102220	ID=Msa0509640-mRNA-1:cds;Parent=Msa0509640-mRNA-1
chr3_4	CDS	58101844	58101997	58101844	ID=Msa0509640-mRNA-1:cds;Parent=Msa0509640-mRNA-1

Gene Sequence

>Msa0509640

ATGGAAAAAATAGGTGTTTCTAATTTTGGTAATAAAATGAATAAGGCAGGGCCTTATGTGTTAACGGTGGCACTTCAATTTGGGTTTGCAGGAGCATACATATTCTCCATGGCCAGTCTCAACATGGGAATGAATCGTTTTGTGTTCATTGTTTATCGTAATCTCATTGCTGCAATTGCCCTTGCCCCCTTTGCACTCATTTTTGAAAGGAAAATTAGGCCAAAGATGACAATGGGTGTCTTTGTGCGGATAATGGCGCTTGCATTTTTGGAGCCAGTGATAGATCAAGGATTTACTTTCTTGGGGATGCAATATACATCGGCTTCATTTGCTTCTGCTTTGATGAATGCTGTTCCTTCTGTTACCTTTGTGCTAGCCGTAATTTTCAGGATTGAACGTGTAAATATGAAAGAGATACGAAGCATAGCAAAAGTGATTGGGACATTAGTAACCTTTGCAGGGGCATTGATGATGATACTTTACAAAGGCCCACAAATTCACCTTTTCTATTCTCCAAAAACAGCACATAATTCTGGAAGTCACGACACGCAAACTCTCAAACATTGGGTCTCAGGAACACTCTTTCTAATGATGGGTTGTGTGGCTTGGTCATCTTTCTTCATTTTACAGTCAGTAACGTTGAAAAAGTATCCAGCAGAAATGTCACTATCAACCTTAATATGCTTAATTGGTGCCATGCAAACTAGTGTGGTGGCATTCATTGCTGAGCGTCACTCTGGTCTTGAGGTTTGGGCCATTGGTTGGGACTTTAGACTATATGGTCCTCTCTACACGGGAATAATTACCTCAGGAATAGCGTATTATGTGCAAGGATTGGTATTTCAAAGCAGAGGACCAGTATTTTATACAGCATTTAACCCCCTTTGTATGATCATCACTTGTGCTTTAGGTTCCTTCCTTTTTGCAGAGCAACTCCACTTGGGAAGTATCATTGGAGCCCTGATTATTGCAGTGGGTCTATATTCTGTGGTGTGGGGTAAAGCAAAAGACTATTCATCAGACACTACTCCTATGCCACCATCACCAGTTGCAATGAAGCAAACTGAGAAACAACTTCCAATTACTTCATCTGATGTCTAA

Protein sequence

>Msa0509640

MEKIGVSNFGNKMNKAGPYVLTVALQFGFAGAYIFSMASLNMGMNRFVFIVYRNLIAAIALAPFALIFERKIRPKMTMGVFVRIMALAFLEPVIDQGFTFLGMQYTSASFASALMNAVPSVTFVLAVIFRIERVNMKEIRSIAKVIGTLVTFAGALMMILYKGPQIHLFYSPKTAHNSGSHDTQTLKHWVSGTLFLMMGCVAWSSFFILQSVTLKKYPAEMSLSTLICLIGAMQTSVVAFIAERHSGLEVWAIGWDFRLYGPLYTGIITSGIAYYVQGLVFQSRGPVFYTAFNPLCMIITCALGSFLFAEQLHLGSIIGALIIAVGLYSVVWGKAKDYSSDTTPMPPSPVAMKQTEKQLPITSSDV*