AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0509640

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0509640 MtrunA17_Chr3g0114711 86.000 400 19 2 1 366 1 397 0.0 686
Msa0509640 MtrunA17_Chr3g0114731 63.818 351 121 4 15 365 16 360 1.52e-162 461
Msa0509640 MtrunA17_Chr3g0114691 49.584 361 173 3 5 363 8 361 6.21e-129 375
Msa0509640 MtrunA17_Chr1g0160171 51.253 359 161 4 13 366 12 361 6.95e-126 367
Msa0509640 MtrunA17_Chr1g0160181 52.890 346 159 3 19 362 20 363 3.68e-124 363
Msa0509640 MtrunA17_Chr3g0114701 51.913 366 157 5 10 363 2 360 1.14e-123 361
Msa0509640 MtrunA17_Chr1g0182291 47.801 341 173 3 11 350 9 345 3.31e-118 347
Msa0509640 MtrunA17_Chr7g0263101 46.491 342 174 3 18 355 14 350 3.45e-115 339
Msa0509640 MtrunA17_Chr7g0255561 45.245 347 169 4 1 337 1 336 1.68e-111 330
Msa0509640 MtrunA17_Chr7g0255581 45.245 347 169 4 1 337 1 336 1.68e-111 330
Msa0509640 MtrunA17_Chr8g0354121 43.605 344 184 4 11 346 7 348 4.70e-105 314
Msa0509640 MtrunA17_Chr3g0081421 43.429 350 189 4 13 356 13 359 1.30e-104 313
Msa0509640 MtrunA17_Chr3g0081511 45.000 340 178 4 14 346 14 351 3.78e-103 309
Msa0509640 MtrunA17_Chr1g0177221 51.220 246 118 2 19 264 20 263 6.33e-84 256
Msa0509640 MtrunA17_Chr1g0186601 39.394 330 193 3 14 341 13 337 3.14e-82 254
Msa0509640 MtrunA17_Chr1g0186641 38.906 329 198 2 13 341 9 334 4.72e-82 254
Msa0509640 MtrunA17_Chr1g0171301 38.110 328 202 1 14 341 13 339 1.65e-79 248
Msa0509640 MtrunA17_Chr1g0186611 37.463 339 209 2 18 356 17 352 1.46e-78 245
Msa0509640 MtrunA17_Chr3g0142131 40.361 332 175 4 23 337 26 351 5.47e-77 242
Msa0509640 MtrunA17_Chr1g0186571 37.764 331 199 3 13 341 9 334 1.15e-76 240
Msa0509640 MtrunA17_Chr1g0186561 38.838 327 192 3 18 341 17 338 4.10e-76 239
Msa0509640 MtrunA17_Chr1g0155761 37.941 340 185 4 19 337 23 357 2.79e-75 238
Msa0509640 MtrunA17_Chr1g0184221 34.946 372 210 5 14 365 13 372 3.64e-73 232
Msa0509640 MtrunA17_Chr3g0129571 34.593 344 209 5 13 346 3 340 2.44e-72 229
Msa0509640 MtrunA17_Chr6g0483401 35.072 345 218 3 26 366 19 361 1.67e-70 224
Msa0509640 MtrunA17_Chr3g0129601 34.821 336 210 3 13 343 25 356 3.75e-70 224
Msa0509640 MtrunA17_Chr3g0129591 35.650 331 205 4 13 337 1 329 1.06e-67 217
Msa0509640 MtrunA17_Chr4g0050881 36.111 360 216 6 10 363 2 353 1.17e-67 217
Msa0509640 MtrunA17_Chr6g0463971 32.249 338 223 3 3 337 2 336 1.21e-66 214
Msa0509640 MtrunA17_Chr2g0284261 35.652 345 212 3 18 359 9 346 1.96e-65 211
Msa0509640 MtrunA17_Chr8g0383731 34.770 348 213 4 13 354 1 340 3.56e-65 210
Msa0509640 MtrunA17_Chr1g0164831 33.642 324 204 4 18 337 4 320 4.82e-62 202
Msa0509640 MtrunA17_Chr2g0278561 32.143 364 232 5 7 358 5 365 4.17e-60 198
Msa0509640 MtrunA17_Chr3g0129581 35.241 332 205 6 13 337 1 329 1.98e-59 196
Msa0509640 MtrunA17_Chr7g0271561 31.118 331 219 2 18 341 8 336 3.71e-59 196
Msa0509640 MtrunA17_Chr8g0334761 34.085 355 215 5 18 363 11 355 3.68e-58 192
Msa0509640 MtrunA17_Chr2g0290611 34.030 335 215 3 13 344 8 339 1.47e-57 191
Msa0509640 MtrunA17_Chr3g0126101 34.421 337 203 5 34 366 23 345 1.54e-57 190
Msa0509640 MtrunA17_Chr4g0073241 32.295 353 219 9 18 361 9 350 1.43e-56 189
Msa0509640 MtrunA17_Chr2g0278551 33.523 352 224 5 18 366 13 357 3.77e-56 188
Msa0509640 MtrunA17_Chr2g0278541 32.000 350 216 6 11 346 6 347 2.48e-55 186
Msa0509640 MtrunA17_Chr5g0413921 33.841 328 210 6 23 347 13 336 5.45e-54 181
Msa0509640 MtrunA17_Chr8g0334771 34.012 344 218 3 18 357 11 349 9.90e-54 181
Msa0509640 MtrunA17_Chr5g0413941 33.945 327 200 6 23 342 13 330 1.94e-53 180
Msa0509640 MtrunA17_Chr2g0332001 31.288 326 204 3 21 337 42 356 3.22e-53 181
Msa0509640 MtrunA17_Chr4g0059311 32.770 296 195 3 43 337 38 330 4.84e-53 179
Msa0509640 MtrunA17_Chr5g0413961 34.545 330 204 4 11 337 8 328 2.13e-52 177
Msa0509640 MtrunA17_Chr2g0310441 33.230 322 210 3 18 337 11 329 2.32e-52 177
Msa0509640 MtrunA17_Chr4g0050891 32.110 327 215 3 11 332 7 331 2.29e-50 172
Msa0509640 MtrunA17_Chr1g0160111 28.775 351 225 6 26 358 16 359 3.06e-50 172
Msa0509640 MtrunA17_Chr5g0413951 33.030 330 211 6 13 337 1 325 3.60e-50 171
Msa0509640 MtrunA17_Chr1g0150151 30.678 339 221 6 18 346 12 346 5.28e-48 166
Msa0509640 MtrunA17_Chr5g0413931 30.857 350 232 6 13 357 2 346 4.88e-47 163
Msa0509640 MtrunA17_Chr8g0334751 31.389 360 237 6 10 365 4 357 3.74e-46 161
Msa0509640 MtrunA17_Chr5g0408001 31.790 324 201 5 30 337 23 342 5.86e-46 161
Msa0509640 MtrunA17_Chr7g0227921 34.551 301 182 5 43 337 37 328 1.07e-45 160
Msa0509640 MtrunA17_Chr5g0407971 31.231 333 209 5 30 346 24 352 1.14e-44 158
Msa0509640 MtrunA17_Chr4g0051021 28.746 327 229 2 13 337 10 334 1.39e-44 157
Msa0509640 MtrunA17_Chr5g0441761 29.360 344 222 6 25 365 22 347 1.19e-43 154
Msa0509640 MtrunA17_Chr4g0050941 31.304 345 217 7 11 342 6 343 5.28e-43 153
Msa0509640 MtrunA17_Chr5g0408031 31.627 332 207 6 23 337 16 344 2.52e-42 151
Msa0509640 MtrunA17_Chr5g0428881 27.988 343 230 5 31 366 32 364 1.07e-41 150
Msa0509640 MtrunA17_Chr5g0407991 30.086 349 212 6 10 337 4 341 1.76e-41 149
Msa0509640 MtrunA17_Chr5g0408041 30.606 330 209 5 25 337 19 345 3.15e-41 149
Msa0509640 MtrunA17_Chr8g0369841 29.254 335 216 6 29 346 20 350 4.60e-39 143
Msa0509640 MtrunA17_Chr6g0451201 32.278 316 206 5 34 349 30 337 6.70e-39 142
Msa0509640 MtrunA17_Chr6g0451211 31.546 317 205 6 38 349 33 342 2.20e-38 140
Msa0509640 MtrunA17_Chr1g0211801 31.429 245 151 4 11 247 5 240 1.35e-37 136
Msa0509640 MtrunA17_Chr3g0126091 26.611 357 243 5 18 366 12 357 4.14e-37 137
Msa0509640 MtrunA17_Chr3g0084091 29.845 258 163 4 97 349 10 254 1.07e-36 134
Msa0509640 MtrunA17_Chr4g0050931 29.042 334 189 5 11 337 6 298 1.58e-36 134
Msa0509640 MtrunA17_Chr6g0451261 29.043 303 209 5 18 318 12 310 1.59e-34 134
Msa0509640 MtrunA17_Chr4g0051001 28.155 309 201 4 18 315 32 330 6.67e-34 128
Msa0509640 MtrunA17_Chr6g0451171 29.377 337 223 7 18 349 13 339 8.51e-34 128
Msa0509640 MtrunA17_Chr6g0451251 32.573 307 196 6 34 337 30 328 6.55e-33 126
Msa0509640 MtrunA17_Chr5g0404811 31.718 227 142 4 130 348 6 227 1.26e-32 122
Msa0509640 MtrunA17_Chr1g0182261 41.549 142 80 3 204 343 76 216 1.12e-30 116
Msa0509640 MtrunA17_Chr4g0056081 28.571 329 222 8 23 343 20 343 3.02e-30 118
Msa0509640 MtrunA17_Chr5g0429001 25.874 286 191 4 97 365 31 312 2.14e-29 115
Msa0509640 MtrunA17_Chr2g0278021 31.250 224 145 4 131 347 1 222 1.04e-28 112
Msa0509640 MtrunA17_Chr6g0451191 30.357 224 141 3 131 349 1 214 5.56e-28 109
Msa0509640 MtrunA17_Chr5g0399281 27.829 327 220 7 23 341 14 332 8.70e-28 111
Msa0509640 MtrunA17_Chr1g0172881 40.146 137 69 3 130 264 23 148 6.89e-27 104
Msa0509640 MtrunA17_Chr1g0177231 47.748 111 42 3 257 361 17 117 1.27e-24 97.4
Msa0509640 MtrunA17_Chr8g0334711 31.122 196 129 2 18 210 11 203 5.77e-24 98.2
Msa0509640 MtrunA17_Chr5g0404801 41.026 117 69 0 14 130 4 120 1.79e-22 91.7
Msa0509640 MtrunA17_Chr1g0172891 45.631 103 41 3 264 361 3 95 1.65e-20 85.9
Msa0509640 MtrunA17_Chr8g0334721 31.852 135 90 1 227 361 1 133 1.21e-18 82.4
Msa0509640 MtrunA17_Chr8g0334731 35.897 117 73 1 96 210 71 187 1.24e-15 74.7
Msa0509640 MtrunA17_Chr2g0278031 34.545 110 72 0 18 127 15 124 2.21e-13 66.6
Msa0509640 MtrunA17_Chr6g0451241 43.939 66 37 0 284 349 26 91 5.43e-13 65.1
Msa0509640 MtrunA17_Chr4g0050911 35.714 84 54 0 102 185 16 99 8.53e-13 65.9
Msa0509640 MtrunA17_Chr4g0050921 34.615 104 66 1 215 318 3 104 9.79e-13 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0509640 AT4G08290.1 57.627 354 139 5 13 363 8 353 6.78e-147 421
Msa0509640 AT4G08300.1 50.000 362 162 4 10 365 3 351 5.75e-125 364
Msa0509640 AT1G44800.1 50.140 357 164 5 10 363 3 348 1.97e-124 363
Msa0509640 AT1G21890.1 49.724 362 165 4 13 359 6 365 4.61e-122 358
Msa0509640 AT2G37460.1 46.686 347 180 3 11 356 8 350 7.33e-116 342
Msa0509640 AT1G21890.2 50.000 312 145 2 13 315 6 315 9.07e-108 320
Msa0509640 AT2G39510.1 44.000 350 184 4 18 366 8 346 7.28e-107 318
Msa0509640 AT4G08290.2 59.766 256 97 4 13 265 8 260 1.15e-106 315
Msa0509640 AT5G07050.1 43.768 345 182 4 1 337 3 343 3.84e-102 307
Msa0509640 AT2G40900.1 43.478 345 187 3 10 353 2 339 8.63e-101 303
Msa0509640 AT2G37450.2 44.380 347 167 4 13 358 4 325 1.74e-93 283
Msa0509640 AT3G56620.1 43.252 326 178 3 10 334 2 321 5.20e-92 280
Msa0509640 AT5G13670.1 38.393 336 202 4 12 344 2 335 1.44e-82 256
Msa0509640 AT2G37450.3 47.471 257 130 3 103 358 1 253 4.38e-76 236
Msa0509640 AT1G75500.1 38.037 326 193 3 19 337 21 344 4.25e-74 235
Msa0509640 AT1G75500.2 38.037 326 193 3 19 337 21 344 4.25e-74 235
Msa0509640 AT3G18200.2 34.783 368 227 7 2 365 22 380 3.13e-71 227
Msa0509640 AT5G64700.1 34.535 333 209 2 12 337 2 332 6.27e-66 213
Msa0509640 AT3G53210.1 37.195 328 193 4 14 335 6 326 6.88e-65 211
Msa0509640 AT3G30340.1 35.161 310 196 4 40 347 33 339 9.79e-63 205
Msa0509640 AT2G37450.1 45.217 230 121 3 130 358 61 286 1.67e-61 199
Msa0509640 AT4G30420.2 34.043 329 212 2 12 337 3 329 2.62e-58 194
Msa0509640 AT1G09380.1 32.308 325 206 4 18 334 8 326 7.31e-58 192
Msa0509640 AT4G30420.1 34.810 316 201 2 25 337 6 319 2.25e-57 191
Msa0509640 AT1G43650.1 34.921 315 200 2 23 337 12 321 2.71e-56 187
Msa0509640 AT1G25270.1 34.104 346 212 7 23 361 8 344 3.17e-54 182
Msa0509640 AT1G68170.1 34.286 350 222 3 23 366 8 355 1.74e-52 178
Msa0509640 AT1G68170.2 34.286 350 222 3 23 366 18 365 2.56e-52 178
Msa0509640 AT4G28040.1 31.953 338 211 5 12 345 2 324 3.04e-51 175
Msa0509640 AT4G28040.5 31.953 338 211 5 12 345 2 324 3.04e-51 175
Msa0509640 AT4G28040.3 31.953 338 211 5 12 345 2 324 3.04e-51 175
Msa0509640 AT4G28040.4 31.953 338 211 5 12 345 2 324 3.04e-51 175
Msa0509640 AT4G28040.2 31.953 338 211 5 12 345 2 324 3.04e-51 175
Msa0509640 AT1G01070.1 32.335 334 218 4 13 342 11 340 1.70e-50 173
Msa0509640 AT3G53210.2 39.516 248 137 4 94 335 29 269 2.83e-48 166
Msa0509640 AT5G40230.1 32.081 346 212 6 18 348 21 358 4.21e-48 167
Msa0509640 AT4G01440.1 27.457 346 236 2 15 360 7 337 5.54e-48 166
Msa0509640 AT3G53210.3 37.209 258 149 4 14 265 6 256 8.84e-48 163
Msa0509640 AT1G11450.3 31.250 336 223 4 13 345 11 341 4.32e-47 164
Msa0509640 AT4G01430.1 33.115 305 194 7 39 337 30 330 9.20e-46 160
Msa0509640 AT5G40240.1 31.003 329 220 4 18 342 20 345 5.68e-45 159
Msa0509640 AT5G40240.3 31.003 329 220 4 18 342 20 345 5.68e-45 159
Msa0509640 AT5G40240.2 31.003 329 220 4 18 342 34 359 1.01e-44 158
Msa0509640 AT3G28130.2 31.250 304 201 6 38 337 33 332 2.74e-44 156
Msa0509640 AT1G11450.5 32.997 297 191 4 52 345 6 297 5.35e-44 154
Msa0509640 AT3G28130.5 33.333 240 156 3 100 337 9 246 2.40e-43 151
Msa0509640 AT3G28130.1 33.333 240 156 3 100 337 9 246 2.40e-43 151
Msa0509640 AT1G11460.1 31.818 330 212 6 14 337 12 334 2.58e-43 153
Msa0509640 AT3G18200.1 32.812 256 162 6 114 365 1 250 6.60e-43 150
Msa0509640 AT1G01070.2 33.099 284 182 4 63 342 14 293 7.08e-43 152
Msa0509640 AT1G11450.2 32.765 293 189 4 56 345 3 290 8.60e-43 151
Msa0509640 AT3G28080.5 33.473 239 155 3 101 337 8 244 1.11e-42 150
Msa0509640 AT3G28080.7 33.473 239 155 3 101 337 8 244 1.11e-42 150
Msa0509640 AT3G28080.8 33.473 239 155 3 101 337 8 244 1.11e-42 150
Msa0509640 AT3G28080.6 33.473 239 155 3 101 337 8 244 1.11e-42 150
Msa0509640 AT3G28080.1 32.836 268 171 5 74 337 71 333 1.33e-42 152
Msa0509640 AT4G01440.3 27.907 301 215 1 15 315 7 305 2.78e-42 150
Msa0509640 AT3G28070.2 31.111 270 168 5 100 359 7 268 3.58e-42 148
Msa0509640 AT5G64700.2 31.923 260 168 2 12 264 2 259 6.10e-42 147
Msa0509640 AT3G28080.2 33.473 239 155 3 101 337 89 325 7.47e-42 150
Msa0509640 AT3G28100.1 30.408 319 214 6 23 337 19 333 1.78e-41 149
Msa0509640 AT3G28070.1 31.061 264 176 4 100 359 99 360 3.06e-41 148
Msa0509640 AT3G45870.1 29.538 325 215 3 19 332 13 334 8.30e-41 148
Msa0509640 AT1G70260.1 28.402 338 224 4 12 337 6 337 1.22e-40 147
Msa0509640 AT3G28050.1 32.353 306 197 6 34 337 29 326 2.22e-40 146
Msa0509640 AT5G40210.1 28.869 336 214 10 10 341 4 318 5.92e-40 144
Msa0509640 AT5G45370.1 28.662 314 208 4 31 342 33 332 2.12e-39 143
Msa0509640 AT3G30340.2 32.365 241 157 3 40 279 33 268 2.40e-39 141
Msa0509640 AT4G15540.1 28.655 342 230 4 18 358 17 345 6.55e-39 142
Msa0509640 AT4G15540.2 28.655 342 230 4 18 358 17 345 6.55e-39 142
Msa0509640 AT4G01430.2 32.862 283 180 7 39 315 30 308 2.48e-38 139
Msa0509640 AT5G45370.2 28.012 332 211 5 31 342 33 356 2.49e-38 141
Msa0509640 AT5G45370.4 28.012 332 211 5 31 342 33 356 2.49e-38 141
Msa0509640 AT4G19185.1 28.324 346 222 4 30 356 33 371 5.85e-38 140
Msa0509640 AT1G11450.4 30.392 306 205 4 13 315 11 311 1.46e-37 137
Msa0509640 AT4G01450.2 30.872 298 200 3 40 337 32 323 5.53e-37 137
Msa0509640 AT4G01450.1 32.906 234 151 3 40 273 32 259 8.69e-37 136
Msa0509640 AT4G01450.4 35.377 212 131 3 40 251 32 237 1.06e-36 134
Msa0509640 AT1G11450.1 32.806 253 162 4 96 345 2 249 1.07e-36 134
Msa0509640 AT5G47470.1 28.483 323 218 4 23 341 35 348 1.12e-35 134
Msa0509640 AT5G47470.2 28.483 323 218 4 23 341 63 376 1.76e-35 134
Msa0509640 AT5G47470.3 28.483 323 218 4 23 341 63 376 2.08e-35 133
Msa0509640 AT4G01440.4 29.870 231 162 0 15 245 7 237 2.41e-35 130
Msa0509640 AT3G45870.8 27.922 308 208 3 19 315 13 317 1.22e-33 127
Msa0509640 AT1G60050.1 27.401 354 245 5 18 361 13 364 1.60e-33 128
Msa0509640 AT4G01450.3 35.176 199 125 2 40 238 32 226 1.86e-32 122
Msa0509640 AT3G28070.3 32.110 218 144 3 100 315 99 314 4.05e-32 123
Msa0509640 AT4G24980.1 29.052 327 160 7 39 364 8 263 4.73e-32 122
Msa0509640 AT1G43650.2 32.677 254 165 3 23 275 12 260 5.98e-31 119
Msa0509640 AT3G28130.3 30.493 223 145 4 131 345 1 221 2.24e-30 116
Msa0509640 AT3G45870.9 30.126 239 156 1 19 246 13 251 2.30e-30 117
Msa0509640 AT3G28080.9 30.622 209 141 3 131 337 1 207 8.59e-30 114
Msa0509640 AT3G28070.5 28.870 239 152 5 131 359 1 231 3.35e-29 113
Msa0509640 AT4G01440.5 25.620 242 165 2 119 360 3 229 3.81e-29 114
Msa0509640 AT4G01440.2 25.620 242 165 2 119 360 3 229 3.81e-29 114
Msa0509640 AT4G19185.2 27.046 281 179 4 95 356 20 293 1.76e-27 110
Msa0509640 AT3G28130.4 30.973 226 149 5 38 259 33 255 1.52e-26 107
Msa0509640 AT3G28080.3 29.851 268 125 7 74 337 71 279 4.13e-25 103
Msa0509640 AT3G28080.4 30.126 239 109 5 101 337 8 190 5.35e-25 101
Msa0509640 AT4G16620.1 25.150 334 240 4 26 358 20 344 2.92e-24 102
Msa0509640 AT3G28100.3 29.876 241 162 5 23 259 19 256 3.24e-24 100
Msa0509640 AT5G45370.6 26.848 257 160 5 101 337 1 249 9.53e-24 99.8
Msa0509640 AT5G45370.5 26.848 257 160 5 101 337 1 249 9.53e-24 99.8
Msa0509640 AT3G45870.5 29.461 241 153 5 103 332 25 259 8.89e-21 92.0
Msa0509640 AT4G01430.3 29.442 197 130 6 146 337 1 193 2.45e-18 83.6
Msa0509640 AT3G28130.6 35.036 137 85 3 38 172 33 167 3.66e-18 82.8
Msa0509640 AT4G16620.4 26.953 256 178 3 103 358 1 247 1.11e-17 82.4
Msa0509640 AT4G16620.2 26.953 256 178 3 103 358 1 247 1.11e-17 82.4
Msa0509640 AT3G28100.2 30.729 192 127 4 23 210 19 208 2.41e-17 81.3
Msa0509640 AT5G45370.3 25.108 231 145 5 132 342 74 296 2.41e-15 76.6
Msa0509640 AT4G16620.3 27.014 211 151 3 26 235 20 228 2.50e-15 75.9
Msa0509640 AT3G45870.6 28.431 204 129 5 103 295 25 222 3.21e-14 72.4
Msa0509640 AT3G45870.7 28.431 204 129 5 103 295 25 222 3.21e-14 72.4
Msa0509640 AT3G45870.2 26.882 186 122 3 158 332 1 183 2.77e-12 66.2
Msa0509640 AT3G45870.3 30.323 155 94 3 103 246 25 176 4.83e-11 62.0

Find 91 sgRNAs with CRISPR-Local

Find 247 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAATAGGTGTTTCTAATTT+TGG 0.097188 3_4:-58106235 Msa0509640:CDS
TCAACCTTAATATGCTTAAT+TGG 0.206118 3_4:-58103338 Msa0509640:CDS
GATCAAGGATTTACTTTCTT+GGG 0.226580 3_4:-58103974 Msa0509640:CDS
ATGATCATCACTTGTGCTTT+AGG 0.227026 3_4:-58102256 Msa0509640:CDS
GTCACTCTGGTCTTGAGGTT+TGG 0.247478 3_4:-58103277 Msa0509640:CDS
GCACTTCAATTTGGGTTTGC+AGG 0.256620 3_4:-58106172 Msa0509640:CDS
TACAACTTTGCAGGAAAATT+AGG 0.260312 3_4:-58105611 Msa0509640:intron
GGCACCAATTAAGCATATTA+AGG 0.276307 3_4:+58103334 None:intergenic
GGTTGGGACTTTAGACTATA+TGG 0.302017 3_4:-58103248 Msa0509640:CDS
GGTCTTGAGGTTTGGGCCAT+TGG 0.308784 3_4:-58103269 Msa0509640:CDS
TCACTCTGGTCTTGAGGTTT+GGG 0.309943 3_4:-58103276 Msa0509640:CDS
TTAACGGTGGCACTTCAATT+TGG 0.325006 3_4:-58106181 Msa0509640:CDS
GGGACATTAGTAACCTTTGC+AGG 0.325264 3_4:-58103673 Msa0509640:CDS
AAGACACCCATTGTCATCTT+TGG 0.325604 3_4:+58105588 None:intergenic
TAGACATCAGATGAAGTAAT+TGG 0.329648 3_4:+58101845 None:intergenic
TTTGTTGATTACAGTATCAT+TGG 0.334370 3_4:-58101989 Msa0509640:intron
TGAGGTTTGGGCCATTGGTT+GGG 0.351081 3_4:-58103264 Msa0509640:CDS
TTGAGGTTTGGGCCATTGGT+TGG 0.352099 3_4:-58103265 Msa0509640:CDS
AGATCAAGGATTTACTTTCT+TGG 0.355086 3_4:-58103975 Msa0509640:CDS
TCAGTTTGCTTCATTGCAAC+TGG 0.357064 3_4:+58101878 None:intergenic
ATAGACCCACTGCAATAATC+AGG 0.361308 3_4:+58101963 None:intergenic
TAACGGTGGCACTTCAATTT+GGG 0.361637 3_4:-58106180 Msa0509640:CDS
AGTGGAGTTGCTCTGCAAAA+AGG 0.371654 3_4:+58102227 None:intergenic
ATTTGGTTACCTGAAAATTA+CGG 0.378910 3_4:+58103880 None:intergenic
TTAAATGCTGTATAAAATAC+TGG 0.379245 3_4:+58102289 None:intergenic
AGGAACACTCTTTCTAATGA+TGG 0.410004 3_4:-58103539 Msa0509640:CDS
ACTCTCAAACATTGGGTCTC+AGG 0.410947 3_4:-58103559 Msa0509640:CDS
GGTAATAAAATGAATAAGGC+AGG 0.427576 3_4:-58106214 Msa0509640:CDS
GGGTCTATATTCTGTGGTGT+GGG 0.434106 3_4:-58101948 Msa0509640:CDS
CGAAGCATAGCAAAAGTGAT+TGG 0.452310 3_4:-58103694 Msa0509640:CDS
TTTAGGCCAGTGATAGATCA+AGG 0.452691 3_4:-58103989 Msa0509640:intron
ACACGCAAACTCTCAAACAT+TGG 0.463592 3_4:-58103567 Msa0509640:CDS
GGGTGTCTTTGTGCGGATAA+TGG 0.463680 3_4:-58105574 Msa0509640:CDS
GTTGATAGTGACATTTCTGC+TGG 0.464929 3_4:+58103356 None:intergenic
TAATGATGGGTTGTGTGGCT+TGG 0.467472 3_4:-58103525 Msa0509640:CDS
GGCAGGGCCTTATGTGTTAA+CGG 0.467713 3_4:-58106197 Msa0509640:CDS
TGGGTCTATATTCTGTGGTG+TGG 0.473719 3_4:-58101949 Msa0509640:CDS
TGCTTCATTGCAACTGGTGA+TGG 0.475348 3_4:+58101884 None:intergenic
CACGCAAACTCTCAAACATT+GGG 0.482922 3_4:-58103566 Msa0509640:CDS
TTTCAGGGAATAATTACCTC+AGG 0.490153 3_4:-58102355 Msa0509640:intron
ATTCATTCCCATGTTGAGAC+TGG 0.492222 3_4:+58106129 None:intergenic
ATTAGGCCAAAGATGACAAT+GGG 0.506829 3_4:-58105594 Msa0509640:CDS
CTCCATGGCCAGTCTCAACA+TGG 0.517219 3_4:-58106137 Msa0509640:CDS
GGAACACTCTTTCTAATGAT+GGG 0.519597 3_4:-58103538 Msa0509640:CDS
TGGAGCCCTGATTATTGCAG+TGG 0.520137 3_4:-58101969 Msa0509640:CDS
GAAGCATAGCAAAAGTGATT+GGG 0.521865 3_4:-58103693 Msa0509640:CDS
GTAAATCCTTGATCTATCAC+TGG 0.527191 3_4:+58103983 None:intergenic
ACAAGTGATGATCATACAAA+GGG 0.529299 3_4:+58102264 None:intergenic
TCCCATGTTGAGACTGGCCA+TGG 0.532428 3_4:+58106135 None:intergenic
TTCATTGCTGAGCGTCACTC+TGG 0.533655 3_4:-58103290 Msa0509640:CDS
CTTTCTAATGATGGGTTGTG+TGG 0.538049 3_4:-58103530 Msa0509640:CDS
AGTGCCACCGTTAACACATA+AGG 0.539701 3_4:+58106190 None:intergenic
GAATAGAAAAGGTGAATTTG+TGG 0.542285 3_4:+58103622 None:intergenic
ATCAAGGATTTACTTTCTTG+GGG 0.542739 3_4:-58103973 Msa0509640:CDS
AGCGTATTATGTGCAAGGAT+TGG 0.543440 3_4:-58102329 Msa0509640:CDS
AATAGAAAAGGTGAATTTGT+GGG 0.544421 3_4:+58103623 None:intergenic
CTTGGGGATGCAATATACAT+CGG 0.549174 3_4:-58103957 Msa0509640:CDS
TGCCACCACACTAGTTTGCA+TGG 0.549697 3_4:+58103313 None:intergenic
TGAGCGTCACTCTGGTCTTG+AGG 0.557312 3_4:-58103282 Msa0509640:CDS
CAGAGCAACTCCACTTGGGA+AGG 0.561936 3_4:-58102219 Msa0509640:intron
GGACATTAGTAACCTTTGCA+GGG 0.563644 3_4:-58103672 Msa0509640:CDS
TTCATTGCAACTGGTGATGG+TGG 0.573404 3_4:+58101887 None:intergenic
GGAGCCCTGATTATTGCAGT+GGG 0.579920 3_4:-58101968 Msa0509640:CDS
GGTCTATATTCTGTGGTGTG+GGG 0.589276 3_4:-58101947 Msa0509640:CDS
GCAACTGGTGATGGTGGCAT+AGG 0.594061 3_4:+58101893 None:intergenic
CACAAGTGATGATCATACAA+AGG 0.594526 3_4:+58102263 None:intergenic
TTTGCAGAGCAACTCCACTT+GGG 0.594536 3_4:-58102223 Msa0509640:CDS
GGAATAGCGTATTATGTGCA+AGG 0.597413 3_4:-58102334 Msa0509640:CDS
AATTAGGCCAAAGATGACAA+TGG 0.598592 3_4:-58105595 Msa0509640:CDS
CATCATCAATGCCCCTGCAA+AGG 0.600667 3_4:+58103660 None:intergenic
TAGTCTAAAGTCCCAACCAA+TGG 0.609672 3_4:+58103253 None:intergenic
GTAATAAAATGAATAAGGCA+GGG 0.617635 3_4:-58106213 Msa0509640:CDS
GAAAATTACGGCTAGCACAA+AGG 0.618070 3_4:+58103892 None:intergenic
TTAGAAGTTACCTTCCCAAG+TGG 0.619720 3_4:+58102209 None:intergenic
TAGACCCACTGCAATAATCA+GGG 0.620855 3_4:+58101964 None:intergenic
TGCAGTGGGTCTATATTCTG+TGG 0.631521 3_4:-58101954 Msa0509640:CDS
GGATTGGTATTTCAAAGCAG+AGG 0.631848 3_4:-58102313 Msa0509640:CDS
AGGAGCATACATATTCTCCA+TGG 0.632777 3_4:-58106152 Msa0509640:CDS
GCTAGCACAAAGGTAACAGA+AGG 0.636570 3_4:+58103902 None:intergenic
GACATTAGTAACCTTTGCAG+GGG 0.641806 3_4:-58103671 Msa0509640:CDS
ACTATATGGTCCTCTCTACA+CGG 0.654238 3_4:-58103234 Msa0509640:intron
ATAGAGGGTACCGTGTAGAG+AGG 0.656220 3_4:+58103224 None:intergenic
TCCATGGCCAGTCTCAACAT+GGG 0.656868 3_4:-58106136 Msa0509640:CDS
TTGATGATGATACTTTACAA+AGG 0.659362 3_4:-58103646 Msa0509640:CDS
CACATAATACGCTATTCCTG+AGG 0.664509 3_4:+58102339 None:intergenic
TGCCATGCAAACTAGTGTGG+TGG 0.675189 3_4:-58103315 Msa0509640:CDS
TGGTGCCATGCAAACTAGTG+TGG 0.679552 3_4:-58103318 Msa0509640:CDS
TGACAATGGGTGTCTTTGTG+CGG 0.682941 3_4:-58105581 Msa0509640:CDS
AAGTGATGATCATACAAAGG+GGG 0.720906 3_4:+58102266 None:intergenic
CAAGTGATGATCATACAAAG+GGG 0.746307 3_4:+58102265 None:intergenic
AGGGCCTTATGTGTTAACGG+TGG 0.764572 3_4:-58106194 Msa0509640:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTAAAATAATTTTTTATT+AGG - chr3_4:58103700-58103719 Msa0509640:CDS 0.0%
!!! TTTTTCTTTAAAGATATTTA+AGG - chr3_4:58102409-58102428 Msa0509640:intron 10.0%
!!! TTTTCTTTAAAGATATTTAA+GGG - chr3_4:58102410-58102429 Msa0509640:intron 10.0%
!!! TCATTTTCTTTATAAAATTT+TGG - chr3_4:58103597-58103616 Msa0509640:CDS 10.0%
!! AAAACAATTAAATATAATGT+GGG + chr3_4:58103929-58103948 None:intergenic 10.0%
!! AAAAACAATTAAATATAATG+TGG + chr3_4:58103930-58103949 None:intergenic 10.0%
!! TCCTAATATATTAAAATTAA+AGG - chr3_4:58104237-58104256 Msa0509640:intron 10.0%
!!! ACCTTTAATTTTAATATATT+AGG + chr3_4:58104241-58104260 None:intergenic 10.0%
!! TATATATATGAAAAAAGTTA+GGG + chr3_4:58104899-58104918 None:intergenic 10.0%
!! ATATATATATGAAAAAAGTT+AGG + chr3_4:58104900-58104919 None:intergenic 10.0%
!!! ATTAAATAATTGTTGATTTT+TGG - chr3_4:58105142-58105161 Msa0509640:intron 10.0%
!!! TTATGCTTTATTTTAATATA+TGG - chr3_4:58105479-58105498 Msa0509640:intron 10.0%
!!! TATGCTTTATTTTAATATAT+GGG - chr3_4:58105480-58105499 Msa0509640:intron 10.0%
!! TGTAATTAAGATTATAAATT+TGG + chr3_4:58105526-58105545 None:intergenic 10.0%
!!! TTTTGGTAATAAAATGAATA+AGG - chr3_4:58101867-58101886 Msa0509640:CDS 15.0%
!!! TACTATCCATATTTTTTTTA+GGG + chr3_4:58102759-58102778 None:intergenic 15.0%
!! TTGAATTACTAACAAAAATT+AGG - chr3_4:58102936-58102955 Msa0509640:intron 15.0%
!! TGAATTACTAACAAAAATTA+GGG - chr3_4:58102937-58102956 Msa0509640:intron 15.0%
!! ATGCAAAAATAGTAAATAAT+TGG - chr3_4:58103668-58103687 Msa0509640:CDS 15.0%
!! TGCAAAAATAGTAAATAATT+GGG - chr3_4:58103669-58103688 Msa0509640:CDS 15.0%
!! TTATACATTTAAATAAGTGT+AGG + chr3_4:58103899-58103918 None:intergenic 15.0%
!! TATATTAAAATTAAAGGTCT+TGG - chr3_4:58104243-58104262 Msa0509640:intron 15.0%
!! AAACACTTTCATAAAAAAAA+GGG + chr3_4:58104620-58104639 None:intergenic 15.0%
!! AAAACACTTTCATAAAAAAA+AGG + chr3_4:58104621-58104640 None:intergenic 15.0%
!!! AAATAAAGCATAATTTTGAT+TGG + chr3_4:58105472-58105491 None:intergenic 15.0%
!!! ATGCTTTATTTTAATATATG+GGG - chr3_4:58105481-58105500 Msa0509640:intron 15.0%
!!! TCAATGAATTTAAAATTTTC+AGG - chr3_4:58105714-58105733 Msa0509640:intron 15.0%
!!! CAATGAATTTAAAATTTTCA+GGG - chr3_4:58105715-58105734 Msa0509640:intron 15.0%
!! GTCATTTATCAAATTATTAT+TGG + chr3_4:58106043-58106062 None:intergenic 15.0%
!!! AAAATAGGTGTTTCTAATTT+TGG - chr3_4:58101850-58101869 Msa0509640:CDS 20.0%
!! TTGTAAAACAGAATAAGTAA+GGG + chr3_4:58102065-58102084 None:intergenic 20.0%
!! ATTGTAAAACAGAATAAGTA+AGG + chr3_4:58102066-58102085 None:intergenic 20.0%
!! GTATGGAATTAAAATATTGA+CGG - chr3_4:58102154-58102173 Msa0509640:intron 20.0%
!! ATCATTCGATTAAGATTTAA+TGG + chr3_4:58102307-58102326 None:intergenic 20.0%
!! TTTCTAACACTTTATAAGTA+TGG - chr3_4:58102727-58102746 Msa0509640:intron 20.0%
!!! ACTATCCATATTTTTTTTAG+GGG + chr3_4:58102758-58102777 None:intergenic 20.0%
!!! CTACTATCCATATTTTTTTT+AGG + chr3_4:58102760-58102779 None:intergenic 20.0%
!! TAAGAGAAATAAGTATTTCA+AGG - chr3_4:58102805-58102824 Msa0509640:intron 20.0%
!! AAGAGAAATAAGTATTTCAA+GGG - chr3_4:58102806-58102825 Msa0509640:intron 20.0%
!! ATGTTAGAAATCACAAAATT+AGG - chr3_4:58103169-58103188 Msa0509640:intron 20.0%
!! TGTAGGTCTATTATTAAAAA+GGG + chr3_4:58103852-58103871 None:intergenic 20.0%
!!! TTTTTTTGGCATTAATTCTT+CGG + chr3_4:58104302-58104321 None:intergenic 20.0%
!!! ATGGTAGTATAAGATTTTTT+TGG + chr3_4:58104316-58104335 None:intergenic 20.0%
!! TTGATTATAACACAAGTTAA+TGG + chr3_4:58104335-58104354 None:intergenic 20.0%
!! AACACTTTCATAAAAAAAAG+GGG + chr3_4:58104619-58104638 None:intergenic 20.0%
!! TTATATAACCCGAAAAAAAT+AGG + chr3_4:58105232-58105251 None:intergenic 20.0%
!! AGTTTACAAAAATATGGTTT+GGG + chr3_4:58105397-58105416 None:intergenic 20.0%
!! TAGTTTACAAAAATATGGTT+TGG + chr3_4:58105398-58105417 None:intergenic 20.0%
!!! AAACCATATTTTTGTAAACT+AGG - chr3_4:58105397-58105416 Msa0509640:intron 20.0%
!! TTAAATGCTGTATAAAATAC+TGG + chr3_4:58105799-58105818 None:intergenic 20.0%
!!! AAACTTTTATAAGAAAGAAG+AGG + chr3_4:58105906-58105925 None:intergenic 20.0%
!! ACATAATTAAATGTAATCAG+AGG - chr3_4:58106061-58106080 Msa0509640:CDS 20.0%
! GTAATAAAATGAATAAGGCA+GGG - chr3_4:58101872-58101891 Msa0509640:CDS 25.0%
! AATGATTATCAATGTTTCCA+AGG - chr3_4:58102321-58102340 Msa0509640:CDS 25.0%
!! TCTTTAAAGATATTTAAGGG+TGG - chr3_4:58102413-58102432 Msa0509640:intron 25.0%
! ATAGTCCCCTAAAAAAAATA+TGG - chr3_4:58102750-58102769 Msa0509640:intron 25.0%
! AAAACACTTATCGATAGAAT+TGG + chr3_4:58102981-58103000 None:intergenic 25.0%
!!! CTATCGATAAGTGTTTTTTT+TGG - chr3_4:58102984-58103003 Msa0509640:intron 25.0%
! TTACATCTAAAGAGAATAAG+TGG + chr3_4:58103115-58103134 None:intergenic 25.0%
! TTAAACACACAAAATTGAGT+CGG - chr3_4:58103267-58103286 Msa0509640:CDS 25.0%
!! TATCATTTCTCTTTTGCATA+GGG + chr3_4:58103472-58103491 None:intergenic 25.0%
!! ATATCATTTCTCTTTTGCAT+AGG + chr3_4:58103473-58103492 None:intergenic 25.0%
! TTTCTCTTTCTCTATTACTT+TGG - chr3_4:58103558-58103577 Msa0509640:CDS 25.0%
! TCCAAAAGTTGTCATATAAA+TGG - chr3_4:58103624-58103643 Msa0509640:CDS 25.0%
!! TCCATTTATATGACAACTTT+TGG + chr3_4:58103628-58103647 None:intergenic 25.0%
! AAAAGGGAAATGTTAAGAAA+AGG + chr3_4:58103836-58103855 None:intergenic 25.0%
! GTGTAGGTCTATTATTAAAA+AGG + chr3_4:58103853-58103872 None:intergenic 25.0%
!! TTAAGTTCGAAAAAAAGTGT+AGG + chr3_4:58103869-58103888 None:intergenic 25.0%
! CGTAAAAAATTTGTCTCAAT+TGG - chr3_4:58104027-58104046 Msa0509640:intron 25.0%
!! GTACCATTTGGTATTATTTT+AGG - chr3_4:58104079-58104098 Msa0509640:intron 25.0%
! ATTTGGTTACCTGAAAATTA+CGG + chr3_4:58104208-58104227 None:intergenic 25.0%
!!! TTTTCAGGTAACCAAATTAT+AGG - chr3_4:58104211-58104230 Msa0509640:intron 25.0%
! TATTAGGAGAACCTATAATT+TGG + chr3_4:58104225-58104244 None:intergenic 25.0%
! TGTGTTATAATCAATGTATC+AGG - chr3_4:58104341-58104360 Msa0509640:intron 25.0%
!!! TTGATGATGATACTTTACAA+AGG - chr3_4:58104439-58104458 Msa0509640:intron 25.0%
! AATAGAAAAGGTGAATTTGT+GGG + chr3_4:58104465-58104484 None:intergenic 25.0%
! TCAACCTTAATATGCTTAAT+TGG - chr3_4:58104747-58104766 Msa0509640:intron 25.0%
!! TTTTTCATTGCATTTGCAAT+AGG + chr3_4:58105114-58105133 None:intergenic 25.0%
! ATTTAAACAGCTACTTCATT+TGG + chr3_4:58105370-58105389 None:intergenic 25.0%
! ATGAAGTAGCTGTTTAAATT+AGG - chr3_4:58105371-58105390 Msa0509640:intron 25.0%
!! TTTGTTGATTACAGTATCAT+TGG - chr3_4:58106096-58106115 Msa0509640:CDS 25.0%
GGTAATAAAATGAATAAGGC+AGG - chr3_4:58101871-58101890 Msa0509640:CDS 30.0%
TTTCAAAAATGAGTGCAAAG+GGG + chr3_4:58102032-58102051 None:intergenic 30.0%
CTTTCAAAAATGAGTGCAAA+GGG + chr3_4:58102033-58102052 None:intergenic 30.0%
ACATGTTTCATTCACTAACT+TGG - chr3_4:58102104-58102123 Msa0509640:intron 30.0%
AGAAAAGTGGTAATTAGCAT+AGG + chr3_4:58102454-58102473 None:intergenic 30.0%
TACAACTTTGCAGGAAAATT+AGG - chr3_4:58102474-58102493 Msa0509640:intron 30.0%
!! ATTGATAACTAGCTCTACAT+AGG + chr3_4:58102568-58102587 None:intergenic 30.0%
TCACGTTAATATAACTCAGT+TGG - chr3_4:58103038-58103057 Msa0509640:intron 30.0%
TTATTAGGTTTAAACCCACT+TGG - chr3_4:58103715-58103734 Msa0509640:CDS 30.0%
TATTAGGTTTAAACCCACTT+GGG - chr3_4:58103716-58103735 Msa0509640:CDS 30.0%
ATGTATTGTAACGTACCATT+TGG - chr3_4:58104067-58104086 Msa0509640:intron 30.0%
TGGCCTAAAATAATACCAAA+TGG + chr3_4:58104085-58104104 None:intergenic 30.0%
AGATCAAGGATTTACTTTCT+TGG - chr3_4:58104110-58104129 Msa0509640:intron 30.0%
GATCAAGGATTTACTTTCTT+GGG - chr3_4:58104111-58104130 Msa0509640:intron 30.0%
ATCAAGGATTTACTTTCTTG+GGG - chr3_4:58104112-58104131 Msa0509640:intron 30.0%
GAATAGAAAAGGTGAATTTG+TGG + chr3_4:58104466-58104485 None:intergenic 30.0%
!!! CTGTTTTTGGAGAATAGAAA+AGG + chr3_4:58104477-58104496 None:intergenic 30.0%
! GTCATCTTTCTTCATTTTAC+AGG - chr3_4:58104582-58104601 Msa0509640:intron 30.0%
! GGGTATTTGAGATTAATAGA+GGG + chr3_4:58104879-58104898 None:intergenic 30.0%
! AGGGTATTTGAGATTAATAG+AGG + chr3_4:58104880-58104899 None:intergenic 30.0%
AAAGAATAGAATGTCTACCA+AGG - chr3_4:58104974-58104993 Msa0509640:intron 30.0%
ATATCTGATACGTCTCAAAT+AGG - chr3_4:58105063-58105082 Msa0509640:intron 30.0%
ATACGTCTCAAATAGGAAAT+AGG - chr3_4:58105070-58105089 Msa0509640:intron 30.0%
!!! ATTGCGTGTCCTATTTTTTT+CGG - chr3_4:58105220-58105239 Msa0509640:intron 30.0%
! TTCGGGTTATATAATTCGAA+CGG - chr3_4:58105238-58105257 Msa0509640:intron 30.0%
CAAAACACGTTAGAATGTTT+CGG - chr3_4:58105283-58105302 Msa0509640:intron 30.0%
!!! TCGGATTTTAGAATCTGAAT+AGG - chr3_4:58105302-58105321 Msa0509640:intron 30.0%
!!! CGGATTTTAGAATCTGAATA+GGG - chr3_4:58105303-58105322 Msa0509640:intron 30.0%
GTGCCTAGTTTACAAAAATA+TGG + chr3_4:58105403-58105422 None:intergenic 30.0%
ACAAGTGATGATCATACAAA+GGG + chr3_4:58105824-58105843 None:intergenic 30.0%
! TGATTTTATCAAACTCGTGA+TGG + chr3_4:58105976-58105995 None:intergenic 30.0%
CGAGTTTGATAAAATCAAGA+TGG - chr3_4:58105979-58105998 Msa0509640:intron 30.0%
TAGACATCAGATGAAGTAAT+TGG + chr3_4:58106243-58106262 None:intergenic 30.0%
TTCAAAAATGAGTGCAAAGG+GGG + chr3_4:58102031-58102050 None:intergenic 35.0%
CCTTTCAAAAATGAGTGCAA+AGG + chr3_4:58102034-58102053 None:intergenic 35.0%
!! CCTTTGCACTCATTTTTGAA+AGG - chr3_4:58102031-58102050 Msa0509640:intron 35.0%
TAACTTGGATTCCATGTAGT+TGG - chr3_4:58102119-58102138 Msa0509640:intron 35.0%
AACTTGGATTCCATGTAGTT+GGG - chr3_4:58102120-58102139 Msa0509640:intron 35.0%
AATAAGTATATCCCGTTGTC+GGG + chr3_4:58102363-58102382 None:intergenic 35.0%
CAATAAGTATATCCCGTTGT+CGG + chr3_4:58102364-58102383 None:intergenic 35.0%
CTGCAAAGTTGTAAGAAAAG+TGG + chr3_4:58102467-58102486 None:intergenic 35.0%
! CACTTTTCTTACAACTTTGC+AGG - chr3_4:58102465-58102484 Msa0509640:intron 35.0%
AATTAGGCCAAAGATGACAA+TGG - chr3_4:58102490-58102509 Msa0509640:intron 35.0%
ATTAGGCCAAAGATGACAAT+GGG - chr3_4:58102491-58102510 Msa0509640:intron 35.0%
! TTTTGCATAGGGTCATAAGA+GGG + chr3_4:58103461-58103480 None:intergenic 35.0%
GAATCAAATATGAGACCATG+AGG + chr3_4:58103784-58103803 None:intergenic 35.0%
GTCTCATATTTGATTCTCTC+TGG - chr3_4:58103788-58103807 Msa0509640:intron 35.0%
!! TTACTGATTCACTTTGTGTC+TGG + chr3_4:58103977-58103996 None:intergenic 35.0%
GTAAATCCTTGATCTATCAC+TGG + chr3_4:58104105-58104124 None:intergenic 35.0%
GAAGCATAGCAAAAGTGATT+GGG - chr3_4:58104392-58104411 Msa0509640:intron 35.0%
!!! CCAGAATTATGTGCTGTTTT+TGG + chr3_4:58104490-58104509 None:intergenic 35.0%
CCAAAAACAGCACATAATTC+TGG - chr3_4:58104487-58104506 Msa0509640:intron 35.0%
AGGAACACTCTTTCTAATGA+TGG - chr3_4:58104546-58104565 Msa0509640:intron 35.0%
GGAACACTCTTTCTAATGAT+GGG - chr3_4:58104547-58104566 Msa0509640:intron 35.0%
GGCACCAATTAAGCATATTA+AGG + chr3_4:58104754-58104773 None:intergenic 35.0%
AAGTCTAAACTCAATCTCCT+TGG + chr3_4:58104994-58105013 None:intergenic 35.0%
TTCACAACATGACAGACAAA+TGG - chr3_4:58105012-58105031 Msa0509640:intron 35.0%
GACGTATCAGATATTAACTG+TGG + chr3_4:58105057-58105076 None:intergenic 35.0%
GGACACGCAATAAATCAATA+GGG + chr3_4:58105211-58105230 None:intergenic 35.0%
AGGACACGCAATAAATCAAT+AGG + chr3_4:58105212-58105231 None:intergenic 35.0%
!!! TTGCGTGTCCTATTTTTTTC+GGG - chr3_4:58105221-58105240 Msa0509640:intron 35.0%
!!! CGTGTTTTGGAGGTTTTTAT+AGG + chr3_4:58105272-58105291 None:intergenic 35.0%
!! AACATTCTAACGTGTTTTGG+AGG + chr3_4:58105282-58105301 None:intergenic 35.0%
! CGAAACATTCTAACGTGTTT+TGG + chr3_4:58105285-58105304 None:intergenic 35.0%
ACAGCTACTTCATTTGGAAA+AGG + chr3_4:58105364-58105383 None:intergenic 35.0%
TTTCAGGGAATAATTACCTC+AGG - chr3_4:58105730-58105749 Msa0509640:intron 35.0%
AAGTGATGATCATACAAAGG+GGG + chr3_4:58105822-58105841 None:intergenic 35.0%
CAAGTGATGATCATACAAAG+GGG + chr3_4:58105823-58105842 None:intergenic 35.0%
CACAAGTGATGATCATACAA+AGG + chr3_4:58105825-58105844 None:intergenic 35.0%
ATGATCATCACTTGTGCTTT+AGG - chr3_4:58105829-58105848 Msa0509640:intron 35.0%
TAGTGATCATCACTTGTGTT+CGG - chr3_4:58105934-58105953 Msa0509640:intron 35.0%
TTAACGGTGGCACTTCAATT+TGG - chr3_4:58101904-58101923 Msa0509640:CDS 40.0%
TAACGGTGGCACTTCAATTT+GGG - chr3_4:58101905-58101924 Msa0509640:CDS 40.0%
! AGGAGCATACATATTCTCCA+TGG - chr3_4:58101933-58101952 Msa0509640:CDS 40.0%
ATTCATTCCCATGTTGAGAC+TGG + chr3_4:58101959-58101978 None:intergenic 40.0%
! TGTAGAGTATCCCAACTACA+TGG + chr3_4:58102133-58102152 None:intergenic 40.0%
GTTGGGATACTCTACATGTA+TGG - chr3_4:58102137-58102156 Msa0509640:intron 40.0%
CAATGTTTCCAAGGAGTGAA+TGG - chr3_4:58102330-58102349 Msa0509640:CDS 40.0%
AAGACACCCATTGTCATCTT+TGG + chr3_4:58102500-58102519 None:intergenic 40.0%
!! GATAATGGCGCTTGCATTTT+TGG - chr3_4:58102526-58102545 Msa0509640:intron 40.0%
! CTTTTGCATAGGGTCATAAG+AGG + chr3_4:58103462-58103481 None:intergenic 40.0%
!!! AGTTTTAAGTCAACACCACG+AGG + chr3_4:58103746-58103765 None:intergenic 40.0%
TTTGAGTGTGTTCATCCTCA+TGG - chr3_4:58103766-58103785 Msa0509640:intron 40.0%
TTTAGGCCAGTGATAGATCA+AGG - chr3_4:58104096-58104115 Msa0509640:intron 40.0%
CTTGGGGATGCAATATACAT+CGG - chr3_4:58104128-58104147 Msa0509640:intron 40.0%
GAAAATTACGGCTAGCACAA+AGG + chr3_4:58104196-58104215 None:intergenic 40.0%
! TTGTGCTAGCCGTAATTTTC+AGG - chr3_4:58104196-58104215 Msa0509640:intron 40.0%
!! TCTTGGTAACGTGTGTTCTA+AGG - chr3_4:58104260-58104279 Msa0509640:intron 40.0%
CGAAGCATAGCAAAAGTGAT+TGG - chr3_4:58104391-58104410 Msa0509640:intron 40.0%
GGACATTAGTAACCTTTGCA+GGG - chr3_4:58104413-58104432 Msa0509640:intron 40.0%
GACATTAGTAACCTTTGCAG+GGG - chr3_4:58104414-58104433 Msa0509640:intron 40.0%
ACACGCAAACTCTCAAACAT+TGG - chr3_4:58104518-58104537 Msa0509640:intron 40.0%
CACGCAAACTCTCAAACATT+GGG - chr3_4:58104519-58104538 Msa0509640:intron 40.0%
!! CTTTCTAATGATGGGTTGTG+TGG - chr3_4:58104555-58104574 Msa0509640:intron 40.0%
!! GTTGATAGTGACATTTCTGC+TGG + chr3_4:58104732-58104751 None:intergenic 40.0%
! TAGTCTAAAGTCCCAACCAA+TGG + chr3_4:58104835-58104854 None:intergenic 40.0%
GGTTGGGACTTTAGACTATA+TGG - chr3_4:58104837-58104856 Msa0509640:intron 40.0%
ACTATATGGTCCTCTCTACA+CGG - chr3_4:58104851-58104870 Msa0509640:intron 40.0%
CACGCAATAAATCAATAGGG+TGG + chr3_4:58105208-58105227 None:intergenic 40.0%
TGCGCGAGAAACTTATAAAG+TGG - chr3_4:58105326-58105345 Msa0509640:intron 40.0%
CACATAATACGCTATTCCTG+AGG + chr3_4:58105749-58105768 None:intergenic 40.0%
GGAATAGCGTATTATGTGCA+AGG - chr3_4:58105751-58105770 Msa0509640:intron 40.0%
AGCGTATTATGTGCAAGGAT+TGG - chr3_4:58105756-58105775 Msa0509640:intron 40.0%
! GGATTGGTATTTCAAAGCAG+AGG - chr3_4:58105772-58105791 Msa0509640:intron 40.0%
TTAGAAGTTACCTTCCCAAG+TGG + chr3_4:58105879-58105898 None:intergenic 40.0%
GAACACAAGTGATGATCACT+AGG + chr3_4:58105935-58105954 None:intergenic 40.0%
TAGACCCACTGCAATAATCA+GGG + chr3_4:58106124-58106143 None:intergenic 40.0%
ATAGACCCACTGCAATAATC+AGG + chr3_4:58106125-58106144 None:intergenic 40.0%
! TCAGTTTGCTTCATTGCAAC+TGG + chr3_4:58106210-58106229 None:intergenic 40.0%
AGTGCCACCGTTAACACATA+AGG + chr3_4:58101898-58101917 None:intergenic 45.0%
! GCACTTCAATTTGGGTTTGC+AGG - chr3_4:58101913-58101932 Msa0509640:CDS 45.0%
GATTCTCACCATTCACTCCT+TGG + chr3_4:58102341-58102360 None:intergenic 45.0%
AATGGTGAGAATCCCGACAA+CGG - chr3_4:58102348-58102367 Msa0509640:CDS 45.0%
TGACAATGGGTGTCTTTGTG+CGG - chr3_4:58102504-58102523 Msa0509640:intron 45.0%
AGGTTTAAACCCACTTGGGT+TGG - chr3_4:58103720-58103739 Msa0509640:CDS 45.0%
GCTAGCACAAAGGTAACAGA+AGG + chr3_4:58104186-58104205 None:intergenic 45.0%
GGGACATTAGTAACCTTTGC+AGG - chr3_4:58104412-58104431 Msa0509640:intron 45.0%
ACTCTCAAACATTGGGTCTC+AGG - chr3_4:58104526-58104545 Msa0509640:intron 45.0%
!! TAATGATGGGTTGTGTGGCT+TGG - chr3_4:58104560-58104579 Msa0509640:intron 45.0%
!! TCACTCTGGTCTTGAGGTTT+GGG - chr3_4:58104809-58104828 Msa0509640:intron 45.0%
GGAAATAGGATGACCTCCAA+CGG - chr3_4:58105084-58105103 Msa0509640:intron 45.0%
GAAATAGGATGACCTCCAAC+GGG - chr3_4:58105085-58105104 Msa0509640:intron 45.0%
AAATAGGATGACCTCCAACG+GGG - chr3_4:58105086-58105105 Msa0509640:intron 45.0%
GAGTTGCTCTGCAAAAAGGA+AGG + chr3_4:58105857-58105876 None:intergenic 45.0%
AGTGGAGTTGCTCTGCAAAA+AGG + chr3_4:58105861-58105880 None:intergenic 45.0%
! TTTTGCAGAGCAACTCCACT+TGG - chr3_4:58105861-58105880 Msa0509640:intron 45.0%
TTTGCAGAGCAACTCCACTT+GGG - chr3_4:58105862-58105881 Msa0509640:intron 45.0%
TGCAGTGGGTCTATATTCTG+TGG - chr3_4:58106131-58106150 Msa0509640:CDS 45.0%
TGGGTCTATATTCTGTGGTG+TGG - chr3_4:58106136-58106155 Msa0509640:CDS 45.0%
GGGTCTATATTCTGTGGTGT+GGG - chr3_4:58106137-58106156 Msa0509640:CDS 45.0%
GGTCTATATTCTGTGGTGTG+GGG - chr3_4:58106138-58106157 Msa0509640:CDS 45.0%
!! TTCATTGCAACTGGTGATGG+TGG + chr3_4:58106201-58106220 None:intergenic 45.0%
TGCTTCATTGCAACTGGTGA+TGG + chr3_4:58106204-58106223 None:intergenic 45.0%
!! TTACATTATATATATATATA+TGG - chr3_4:58103069-58103088 Msa0509640:intron 5.0%
! GGCAGGGCCTTATGTGTTAA+CGG - chr3_4:58101888-58101907 Msa0509640:CDS 50.0%
! AGGGCCTTATGTGTTAACGG+TGG - chr3_4:58101891-58101910 Msa0509640:CDS 50.0%
TCCATGGCCAGTCTCAACAT+GGG - chr3_4:58101949-58101968 Msa0509640:CDS 50.0%
AATGAGTGCAAAGGGGGCAA+GGG + chr3_4:58102025-58102044 None:intergenic 50.0%
AAATGAGTGCAAAGGGGGCA+AGG + chr3_4:58102026-58102045 None:intergenic 50.0%
ATGGTGAGAATCCCGACAAC+GGG - chr3_4:58102349-58102368 Msa0509640:CDS 50.0%
GGGTGTCTTTGTGCGGATAA+TGG - chr3_4:58102511-58102530 Msa0509640:intron 50.0%
GAGGGACTCAATTAGACGCT+TGG + chr3_4:58103443-58103462 None:intergenic 50.0%
CATCATCAATGCCCCTGCAA+AGG + chr3_4:58104428-58104447 None:intergenic 50.0%
!! TGGTGCCATGCAAACTAGTG+TGG - chr3_4:58104767-58104786 Msa0509640:intron 50.0%
TGCCATGCAAACTAGTGTGG+TGG - chr3_4:58104770-58104789 Msa0509640:intron 50.0%
! TGCCACCACACTAGTTTGCA+TGG + chr3_4:58104775-58104794 None:intergenic 50.0%
TTCATTGCTGAGCGTCACTC+TGG - chr3_4:58104795-58104814 Msa0509640:intron 50.0%
!! GTCACTCTGGTCTTGAGGTT+TGG - chr3_4:58104808-58104827 Msa0509640:intron 50.0%
TTGAGGTTTGGGCCATTGGT+TGG - chr3_4:58104820-58104839 Msa0509640:intron 50.0%
! TGAGGTTTGGGCCATTGGTT+GGG - chr3_4:58104821-58104840 Msa0509640:intron 50.0%
!! ATAGAGGGTACCGTGTAGAG+AGG + chr3_4:58104864-58104883 None:intergenic 50.0%
ATTTGCAATAGGCTCCCCGT+TGG + chr3_4:58105103-58105122 None:intergenic 50.0%
AGATGGTCCTGTCACAGACA+CGG - chr3_4:58105996-58106015 Msa0509640:intron 50.0%
TCAATGTCCGTGTCTGTGAC+AGG + chr3_4:58106006-58106025 None:intergenic 50.0%
TGGAGCCCTGATTATTGCAG+TGG - chr3_4:58106116-58106135 Msa0509640:CDS 50.0%
GGAGCCCTGATTATTGCAGT+GGG - chr3_4:58106117-58106136 Msa0509640:CDS 50.0%
CTCCATGGCCAGTCTCAACA+TGG - chr3_4:58101948-58101967 Msa0509640:CDS 55.0%
! TCCCATGTTGAGACTGGCCA+TGG + chr3_4:58101953-58101972 None:intergenic 55.0%
!! TGAGCGTCACTCTGGTCTTG+AGG - chr3_4:58104803-58104822 Msa0509640:intron 55.0%
GGTCTTGAGGTTTGGGCCAT+TGG - chr3_4:58104816-58104835 Msa0509640:intron 55.0%
CAGAGCAACTCCACTTGGGA+AGG - chr3_4:58105866-58105885 Msa0509640:intron 55.0%
!! GCAACTGGTGATGGTGGCAT+AGG + chr3_4:58106195-58106214 None:intergenic 55.0%
ACCACGAGGCCAACCCAAGT+GGG + chr3_4:58103732-58103751 None:intergenic 60.0%
TGCAATAGGCTCCCCGTTGG+AGG + chr3_4:58105100-58105119 None:intergenic 60.0%
!! ACCCACTTGGGTTGGCCTCG+TGG - chr3_4:58103728-58103747 Msa0509640:intron 65.0%
CACCACGAGGCCAACCCAAG+TGG + chr3_4:58103733-58103752 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 58101844 58106263 58101844 ID=Msa0509640;Name=Msa0509640
chr3_4 mRNA 58101844 58106263 58101844 ID=Msa0509640-mRNA-1;Parent=Msa0509640;Name=Msa0509640-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|1|1|1|7|0|366
chr3_4 exon 58106055 58106263 58106055 ID=Msa0509640-mRNA-1:exon:13453;Parent=Msa0509640-mRNA-1
chr3_4 exon 58105558 58105620 58105558 ID=Msa0509640-mRNA-1:exon:13452;Parent=Msa0509640-mRNA-1
chr3_4 exon 58103890 58104006 58103890 ID=Msa0509640-mRNA-1:exon:13451;Parent=Msa0509640-mRNA-1
chr3_4 exon 58103504 58103744 58103504 ID=Msa0509640-mRNA-1:exon:13450;Parent=Msa0509640-mRNA-1
chr3_4 exon 58103235 58103399 58103235 ID=Msa0509640-mRNA-1:exon:13449;Parent=Msa0509640-mRNA-1
chr3_4 exon 58102220 58102371 58102220 ID=Msa0509640-mRNA-1:exon:13448;Parent=Msa0509640-mRNA-1
chr3_4 exon 58101844 58101997 58101844 ID=Msa0509640-mRNA-1:exon:13447;Parent=Msa0509640-mRNA-1
chr3_4 CDS 58106055 58106263 58106055 ID=Msa0509640-mRNA-1:cds;Parent=Msa0509640-mRNA-1
chr3_4 CDS 58105558 58105620 58105558 ID=Msa0509640-mRNA-1:cds;Parent=Msa0509640-mRNA-1
chr3_4 CDS 58103890 58104006 58103890 ID=Msa0509640-mRNA-1:cds;Parent=Msa0509640-mRNA-1
chr3_4 CDS 58103504 58103744 58103504 ID=Msa0509640-mRNA-1:cds;Parent=Msa0509640-mRNA-1
chr3_4 CDS 58103235 58103399 58103235 ID=Msa0509640-mRNA-1:cds;Parent=Msa0509640-mRNA-1
chr3_4 CDS 58102220 58102371 58102220 ID=Msa0509640-mRNA-1:cds;Parent=Msa0509640-mRNA-1
chr3_4 CDS 58101844 58101997 58101844 ID=Msa0509640-mRNA-1:cds;Parent=Msa0509640-mRNA-1
Gene Sequence

>Msa0509640

ATGGAAAAAATAGGTGTTTCTAATTTTGGTAATAAAATGAATAAGGCAGGGCCTTATGTGTTAACGGTGGCACTTCAATTTGGGTTTGCAGGAGCATACATATTCTCCATGGCCAGTCTCAACATGGGAATGAATCGTTTTGTGTTCATTGTTTATCGTAATCTCATTGCTGCAATTGCCCTTGCCCCCTTTGCACTCATTTTTGAAAGGAAAATTAGGCCAAAGATGACAATGGGTGTCTTTGTGCGGATAATGGCGCTTGCATTTTTGGAGCCAGTGATAGATCAAGGATTTACTTTCTTGGGGATGCAATATACATCGGCTTCATTTGCTTCTGCTTTGATGAATGCTGTTCCTTCTGTTACCTTTGTGCTAGCCGTAATTTTCAGGATTGAACGTGTAAATATGAAAGAGATACGAAGCATAGCAAAAGTGATTGGGACATTAGTAACCTTTGCAGGGGCATTGATGATGATACTTTACAAAGGCCCACAAATTCACCTTTTCTATTCTCCAAAAACAGCACATAATTCTGGAAGTCACGACACGCAAACTCTCAAACATTGGGTCTCAGGAACACTCTTTCTAATGATGGGTTGTGTGGCTTGGTCATCTTTCTTCATTTTACAGTCAGTAACGTTGAAAAAGTATCCAGCAGAAATGTCACTATCAACCTTAATATGCTTAATTGGTGCCATGCAAACTAGTGTGGTGGCATTCATTGCTGAGCGTCACTCTGGTCTTGAGGTTTGGGCCATTGGTTGGGACTTTAGACTATATGGTCCTCTCTACACGGGAATAATTACCTCAGGAATAGCGTATTATGTGCAAGGATTGGTATTTCAAAGCAGAGGACCAGTATTTTATACAGCATTTAACCCCCTTTGTATGATCATCACTTGTGCTTTAGGTTCCTTCCTTTTTGCAGAGCAACTCCACTTGGGAAGTATCATTGGAGCCCTGATTATTGCAGTGGGTCTATATTCTGTGGTGTGGGGTAAAGCAAAAGACTATTCATCAGACACTACTCCTATGCCACCATCACCAGTTGCAATGAAGCAAACTGAGAAACAACTTCCAATTACTTCATCTGATGTCTAA
Protein sequence

>Msa0509640

MEKIGVSNFGNKMNKAGPYVLTVALQFGFAGAYIFSMASLNMGMNRFVFIVYRNLIAAIALAPFALIFERKIRPKMTMGVFVRIMALAFLEPVIDQGFTFLGMQYTSASFASALMNAVPSVTFVLAVIFRIERVNMKEIRSIAKVIGTLVTFAGALMMILYKGPQIHLFYSPKTAHNSGSHDTQTLKHWVSGTLFLMMGCVAWSSFFILQSVTLKKYPAEMSLSTLICLIGAMQTSVVAFIAERHSGLEVWAIGWDFRLYGPLYTGIITSGIAYYVQGLVFQSRGPVFYTAFNPLCMIITCALGSFLFAEQLHLGSIIGALIIAVGLYSVVWGKAKDYSSDTTPMPPSPVAMKQTEKQLPITSSDV*