Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0510480 | XP_013460978.1 | 99.433 | 706 | 4 | 0 | 1 | 706 | 1 | 706 | 0.0 | 1464 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0510480 | sp|Q9SS87|SEOB_ARATH | 40.443 | 722 | 401 | 11 | 4 | 704 | 14 | 727 | 0.0 | 552 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0510480 | A0A072UZM7 | 99.433 | 706 | 4 | 0 | 1 | 706 | 1 | 706 | 0.0 | 1464 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0005890 | Msa0510480 | 0.805249 | 1.462560e-49 | -8.615850e-47 |
| Msa0029970 | Msa0510480 | 0.830670 | 2.576275e-55 | -8.615850e-47 |
| Msa0071850 | Msa0510480 | 0.833125 | 6.383383e-56 | -8.615850e-47 |
| Msa0071860 | Msa0510480 | 0.841760 | 3.907239e-58 | -8.615850e-47 |
| Msa0125210 | Msa0510480 | 0.803477 | 3.422176e-49 | -8.615850e-47 |
| Msa0191020 | Msa0510480 | 0.811630 | 6.359672e-51 | -8.615850e-47 |
| Msa0225860 | Msa0510480 | 0.800625 | 1.319828e-48 | -8.615850e-47 |
| Msa0233320 | Msa0510480 | 0.814724 | 1.331943e-51 | -8.615850e-47 |
| Msa0371170 | Msa0510480 | 0.811868 | 5.644782e-51 | -8.615850e-47 |
| Msa0405680 | Msa0510480 | 0.841520 | 4.522436e-58 | -8.615850e-47 |
| Msa0418970 | Msa0510480 | 0.810550 | 1.090034e-50 | -8.615850e-47 |
| Msa0460550 | Msa0510480 | 0.807281 | 5.456144e-50 | -8.615850e-47 |
| Msa0510480 | Msa0562620 | 0.805457 | 1.322578e-49 | -8.615850e-47 |
| Msa0510480 | Msa0616510 | 0.805000 | 1.648743e-49 | -8.615850e-47 |
| Msa0510480 | Msa0699840 | 0.817523 | 3.155715e-52 | -8.615850e-47 |
| Msa0510480 | Msa0741220 | 0.805565 | 1.255736e-49 | -8.615850e-47 |
| Msa0510480 | Msa0823820 | 0.801012 | 1.100790e-48 | -8.615850e-47 |
| Msa0510480 | Msa1132840 | 0.800670 | 1.292662e-48 | -8.615850e-47 |
| Msa0510480 | Msa1341890 | 0.804431 | 2.167386e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0510480 | MtrunA17_Chr3g0116601 | 99.433 | 706 | 4 | 0 | 1 | 706 | 1 | 706 | 0.0 | 1464 |
| Msa0510480 | MtrunA17_Chr8g0381301 | 52.707 | 702 | 318 | 8 | 15 | 706 | 7 | 704 | 0.0 | 749 |
| Msa0510480 | MtrunA17_Chr7g0226571 | 45.364 | 701 | 367 | 11 | 17 | 704 | 12 | 709 | 0.0 | 600 |
| Msa0510480 | MtrunA17_Chr1g0186841 | 32.040 | 696 | 408 | 18 | 21 | 704 | 19 | 661 | 5.87e-107 | 340 |
| Msa0510480 | MtrunA17_Chr1g0187041 | 32.991 | 682 | 404 | 20 | 30 | 704 | 26 | 661 | 4.60e-103 | 329 |
| Msa0510480 | MtrunA17_Chr1g0186851 | 31.095 | 685 | 417 | 19 | 27 | 704 | 23 | 659 | 1.31e-101 | 325 |
| Msa0510480 | MtrunA17_Chr1g0186861 | 31.304 | 690 | 411 | 21 | 27 | 704 | 23 | 661 | 1.88e-100 | 322 |
| Msa0510480 | MtrunA17_Chr1g0186911 | 32.508 | 606 | 353 | 19 | 108 | 704 | 1 | 559 | 6.14e-95 | 305 |
| Msa0510480 | MtrunA17_Chr1g0165791 | 28.161 | 696 | 429 | 22 | 30 | 704 | 31 | 676 | 3.83e-76 | 258 |
| Msa0510480 | MtrunA17_Chr1g0186981 | 25.360 | 694 | 427 | 24 | 30 | 704 | 40 | 661 | 5.00e-55 | 200 |
| Msa0510480 | MtrunA17_Chr1g0186991 | 26.448 | 639 | 370 | 25 | 100 | 704 | 93 | 665 | 3.62e-52 | 192 |
| Msa0510480 | MtrunA17_Chr1g0187001 | 26.143 | 700 | 412 | 24 | 29 | 704 | 16 | 634 | 4.99e-49 | 182 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0510480 | AT3G01680.1 | 40.443 | 722 | 401 | 11 | 4 | 704 | 14 | 727 | 0.0 | 552 |
| Msa0510480 | AT3G01670.1 | 37.047 | 718 | 399 | 11 | 19 | 706 | 128 | 822 | 3.07e-153 | 465 |
| Msa0510480 | AT3G01670.2 | 37.047 | 718 | 399 | 11 | 19 | 706 | 152 | 846 | 6.57e-153 | 465 |
| Msa0510480 | AT1G67790.1 | 29.529 | 701 | 434 | 21 | 22 | 702 | 4 | 664 | 2.11e-95 | 309 |
Find 145 sgRNAs with CRISPR-Local
Find 216 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTAATTATGTTATATTTAT+AGG | 0.156084 | 3_4:-59532206 | Msa0510480:three_prime_UTR |
| ACTTCTTCATATATTTATTT+AGG | 0.163382 | 3_4:-59532249 | Msa0510480:three_prime_UTR |
| GATATGGATTTGGGGAAATT+TGG | 0.167127 | 3_4:-59533337 | Msa0510480:CDS |
| TCAAGATTTCATCAACAATT+TGG | 0.168351 | 3_4:+59535985 | None:intergenic |
| TGACATCAATTTGGTTCTTT+TGG | 0.182104 | 3_4:-59532878 | Msa0510480:CDS |
| TGGCATTGATCCTGCACTTT+TGG | 0.203402 | 3_4:-59533241 | Msa0510480:CDS |
| TAGATGGAACTACAAAATTA+AGG | 0.217891 | 3_4:-59533829 | Msa0510480:CDS |
| TACTAGCTGGCAAGCTATTA+AGG | 0.226546 | 3_4:-59532101 | Msa0510480:three_prime_UTR |
| CTCTTCACATGATATGGATT+TGG | 0.242306 | 3_4:-59533347 | Msa0510480:CDS |
| AGCATTGAATGATTATATTA+AGG | 0.248515 | 3_4:-59532622 | Msa0510480:CDS |
| TTCCAAACGTGACATCAATT+TGG | 0.261192 | 3_4:-59532887 | Msa0510480:CDS |
| ATATCATGTGAAGAGCATTT+TGG | 0.265496 | 3_4:+59533355 | None:intergenic |
| AAAATGCTCTTCACATGATA+TGG | 0.284577 | 3_4:-59533353 | Msa0510480:CDS |
| TTAATTATGTTATATTTATA+GGG | 0.288088 | 3_4:-59532205 | Msa0510480:three_prime_UTR |
| TCTTCACATGATATGGATTT+GGG | 0.291284 | 3_4:-59533346 | Msa0510480:CDS |
| ATATTCCTATTGCTACCTAT+TGG | 0.303164 | 3_4:-59534506 | Msa0510480:CDS |
| TATTGAGGCATTTCTCTATC+TGG | 0.308636 | 3_4:-59533936 | Msa0510480:CDS |
| TGTAATAGGCTTATTCTTCC+TGG | 0.311032 | 3_4:-59532579 | Msa0510480:CDS |
| TATTCCTATTGCTACCTATT+GGG | 0.336914 | 3_4:-59534505 | Msa0510480:CDS |
| AGCAACCACATCATTGTAAT+AGG | 0.338223 | 3_4:-59532593 | Msa0510480:CDS |
| TATACAAAGATGCAAGATCT+AGG | 0.339203 | 3_4:-59533602 | Msa0510480:CDS |
| CATGTGCATTGTTGAATTCA+AGG | 0.348701 | 3_4:-59534586 | Msa0510480:CDS |
| CATGTTGCTTTGTCTACAAC+TGG | 0.349493 | 3_4:+59533549 | None:intergenic |
| AGCCTTGAGTTGCTTGTTGA+TGG | 0.355975 | 3_4:-59533261 | Msa0510480:CDS |
| TCACAAATTGCAAGTCTCAT+AGG | 0.363224 | 3_4:-59534456 | Msa0510480:CDS |
| TTATTGAACCATCAGTGATT+AGG | 0.364636 | 3_4:-59533452 | Msa0510480:CDS |
| AACCAAATTGATGTCACGTT+TGG | 0.365900 | 3_4:+59532885 | None:intergenic |
| ATTGGAAACTGCTGCTGCTT+TGG | 0.367033 | 3_4:-59535579 | Msa0510480:CDS |
| TGTTAGAAGCAGCTGATAAC+TGG | 0.369862 | 3_4:+59536126 | None:intergenic |
| AGATGGAACTACAAAATTAA+GGG | 0.376780 | 3_4:-59533828 | Msa0510480:intron |
| GTTATCTATTTATTTATGTA+AGG | 0.378553 | 3_4:-59532144 | Msa0510480:three_prime_UTR |
| CCTTGTGGAAGCAAGAGATT+TGG | 0.382186 | 3_4:-59533284 | Msa0510480:CDS |
| CTTATTCTTCCTGGGAGTAC+TGG | 0.385929 | 3_4:-59532570 | Msa0510480:CDS |
| CTTAAGGAGAGCCACAGATT+TGG | 0.390898 | 3_4:+59534698 | None:intergenic |
| GCTCTTTGCTACCAAGCTAT+AGG | 0.395639 | 3_4:-59534209 | Msa0510480:intron |
| ATCTATTTATTTATGTAAGG+TGG | 0.397060 | 3_4:-59532141 | Msa0510480:three_prime_UTR |
| TATTTAGGTTTGAATAATGT+TGG | 0.397447 | 3_4:-59532234 | Msa0510480:three_prime_UTR |
| ATTAGCAAGCTTAAAACAAA+TGG | 0.403682 | 3_4:+59532070 | None:intergenic |
| ACTGAATTTCTTGTTGTTGA+AGG | 0.404691 | 3_4:+59532917 | None:intergenic |
| TCATCAACAATTTGGATAAG+TGG | 0.405497 | 3_4:+59535993 | None:intergenic |
| CAATGTCAGGTAGTTGCTTA+AGG | 0.424799 | 3_4:+59534682 | None:intergenic |
| CATGCCATGGATAGCTAGAT+AGG | 0.425221 | 3_4:+59534808 | None:intergenic |
| ACATCGATTTCACGACCATC+AGG | 0.425726 | 3_4:+59536020 | None:intergenic |
| ATGACCCAATAGGTAGCAAT+AGG | 0.437496 | 3_4:+59534501 | None:intergenic |
| TCTATTTATTTATGTAAGGT+GGG | 0.442583 | 3_4:-59532140 | Msa0510480:three_prime_UTR |
| CTGTAGAGGACCATCTGAAA+TGG | 0.452637 | 3_4:-59532730 | Msa0510480:CDS |
| AAATGTTTATGTTTACTAGC+TGG | 0.453019 | 3_4:-59532114 | Msa0510480:three_prime_UTR |
| GTAATAGGCTTATTCTTCCT+GGG | 0.465122 | 3_4:-59532578 | Msa0510480:CDS |
| TAGGATTGAACAAGATGGTT+GGG | 0.467822 | 3_4:-59532649 | Msa0510480:CDS |
| TGCTGAATGTGGTCGTCAAA+TGG | 0.468093 | 3_4:-59532523 | Msa0510480:CDS |
| ACAGAATTCTCTACAATGTC+AGG | 0.472954 | 3_4:+59534669 | None:intergenic |
| CAGCTATCATGCAAATGCTC+TGG | 0.476086 | 3_4:-59534873 | Msa0510480:CDS |
| CACTAGCCATGTTACTGAAA+AGG | 0.478680 | 3_4:+59536159 | None:intergenic |
| TTAATATAATCATTCAATGC+TGG | 0.481704 | 3_4:+59532624 | None:intergenic |
| TCTGAAATGGCTAGGGCTAA+AGG | 0.482330 | 3_4:-59532717 | Msa0510480:CDS |
| CTTCTTTCTCGCTTGTGAAA+GGG | 0.484100 | 3_4:+59533310 | None:intergenic |
| CGACGGTAGTGATCGAGGTT+GGG | 0.484869 | 3_4:-59532760 | Msa0510480:CDS |
| TCTTCTTTCTCGCTTGTGAA+AGG | 0.487906 | 3_4:+59533309 | None:intergenic |
| AATACTTCTGATGACCCAAT+AGG | 0.487922 | 3_4:+59534491 | None:intergenic |
| CACGTACAATTGGTGACTGC+AGG | 0.489917 | 3_4:+59532438 | None:intergenic |
| ATCATTGCTCGAAGTGTTGA+GGG | 0.490421 | 3_4:-59535957 | Msa0510480:CDS |
| CACAAATTGCAAGTCTCATA+GGG | 0.500466 | 3_4:-59534455 | Msa0510480:CDS |
| TTGTAGTTCCATCTATAAGC+GGG | 0.503453 | 3_4:+59533837 | None:intergenic |
| AGGTAAGTCTTGAAGTACTA+AGG | 0.507282 | 3_4:-59533695 | Msa0510480:CDS |
| TCCTTGTTGTAGATGACAGA+AGG | 0.509373 | 3_4:-59533095 | Msa0510480:intron |
| AGACACACTATGAGATGGTA+TGG | 0.509954 | 3_4:-59533575 | Msa0510480:CDS |
| ATACAAAGATGCAAGATCTA+GGG | 0.510637 | 3_4:-59533601 | Msa0510480:CDS |
| TTGATATACCTAATCACTGA+TGG | 0.515681 | 3_4:+59533444 | None:intergenic |
| CTATTTATTTATGTAAGGTG+GGG | 0.517564 | 3_4:-59532139 | Msa0510480:three_prime_UTR |
| ATTGTGTGAACACGTACAAT+TGG | 0.519407 | 3_4:+59532428 | None:intergenic |
| ATCGTCCTTTGCATAAATCA+AGG | 0.519868 | 3_4:+59533865 | None:intergenic |
| TCATGCAAATGCTCTGGAGG+TGG | 0.523089 | 3_4:-59534867 | Msa0510480:CDS |
| AATAACAGCAAATGCTGCTA+AGG | 0.524767 | 3_4:+59534770 | None:intergenic |
| GAGAGCCTTGATTTATGCAA+AGG | 0.526390 | 3_4:-59533870 | Msa0510480:CDS |
| ATTTGATATGCTAGATGCGC+TGG | 0.526565 | 3_4:-59535552 | Msa0510480:CDS |
| GAGGACCATCTGAAATGGCT+AGG | 0.526776 | 3_4:-59532725 | Msa0510480:CDS |
| ATTCTTCCTGGGAGTACTGG+TGG | 0.530375 | 3_4:-59532567 | Msa0510480:CDS |
| AATCATTGCTCGAAGTGTTG+AGG | 0.530438 | 3_4:-59535958 | Msa0510480:CDS |
| GAGTTAGAGATGGTCTATGT+AGG | 0.535445 | 3_4:-59532981 | Msa0510480:CDS |
| TCGACGGTAGTGATCGAGGT+TGG | 0.535798 | 3_4:-59532761 | Msa0510480:CDS |
| TAAACATGAGCAAGATACAT+TGG | 0.541591 | 3_4:-59535597 | Msa0510480:CDS |
| CATTAACAAAATTTCGTGTG+AGG | 0.543920 | 3_4:-59535522 | Msa0510480:intron |
| TTTCATCAGCCTCAGAAGCA+TGG | 0.544045 | 3_4:-59534292 | Msa0510480:CDS |
| CAATCCACTCATGCCCCTGA+TGG | 0.545575 | 3_4:-59536035 | Msa0510480:CDS |
| TGGGAAGACAATCTTCCTTG+TGG | 0.546787 | 3_4:+59533375 | None:intergenic |
| TTCATCAGCCTCAGAAGCAT+GGG | 0.546942 | 3_4:-59534291 | Msa0510480:CDS |
| TGAGCACTTGCAACAGACAT+AGG | 0.550601 | 3_4:+59534528 | None:intergenic |
| ACGACCATCAGGGGCATGAG+TGG | 0.554798 | 3_4:+59536031 | None:intergenic |
| GGATTGAACTTGTTTCGTCA+TGG | 0.555715 | 3_4:+59536052 | None:intergenic |
| TGCAGGGAATCACGATTCGA+CGG | 0.556317 | 3_4:+59532455 | None:intergenic |
| AGCTTCGACGGTAGTGATCG+AGG | 0.558589 | 3_4:-59532765 | Msa0510480:CDS |
| CCAAATCTCTTGCTTCCACA+AGG | 0.558786 | 3_4:+59533284 | None:intergenic |
| TAATGAACTCACCTATAGCT+TGG | 0.559354 | 3_4:+59534198 | None:intergenic |
| TTGGGTCATCAGAAGTATTG+TGG | 0.562834 | 3_4:-59534487 | Msa0510480:CDS |
| ATAGGATTGAACAAGATGGT+TGG | 0.565947 | 3_4:-59532650 | Msa0510480:CDS |
| ACTGATGGTTCAATAATGAA+AGG | 0.569731 | 3_4:+59533459 | None:intergenic |
| AGATAACTCCCATGCTTCTG+AGG | 0.570568 | 3_4:+59534283 | None:intergenic |
| TTAGCCCTAGCCATTTCAGA+TGG | 0.573010 | 3_4:+59532720 | None:intergenic |
| TGCCATCAACAAGCAACTCA+AGG | 0.577841 | 3_4:+59533259 | None:intergenic |
| CTTGGTAGCAAAGAGCAAGT+TGG | 0.579238 | 3_4:+59534216 | None:intergenic |
| CTATCATGCAAATGCTCTGG+AGG | 0.582216 | 3_4:-59534870 | Msa0510480:CDS |
| TTTCTCGCTTGTGAAAGGGA+AGG | 0.583515 | 3_4:+59533314 | None:intergenic |
| CATCGATTTCACGACCATCA+GGG | 0.587965 | 3_4:+59536021 | None:intergenic |
| CATACCCAGTCCAAAAGTGC+AGG | 0.589037 | 3_4:+59533231 | None:intergenic |
| AAACACACTTGCCAAATCTG+TGG | 0.591889 | 3_4:-59534709 | Msa0510480:CDS |
| GCAGGGAATCACGATTCGAC+GGG | 0.592383 | 3_4:+59532456 | None:intergenic |
| AGGACCATCTGAAATGGCTA+GGG | 0.600106 | 3_4:-59532724 | Msa0510480:CDS |
| ATGACAGTGCTTAGCTTCGA+CGG | 0.600515 | 3_4:-59532777 | Msa0510480:CDS |
| CTTGAATTCAACAATGCACA+TGG | 0.609877 | 3_4:+59534587 | None:intergenic |
| ATTACCTATCTAGCTATCCA+TGG | 0.610258 | 3_4:-59534812 | Msa0510480:CDS |
| ACTCAAAACTACAACATGGT+AGG | 0.611324 | 3_4:-59532833 | Msa0510480:CDS |
| AGATGAAAAGAAGCATATTG+AGG | 0.611744 | 3_4:-59533951 | Msa0510480:CDS |
| TAGCAACTTCGAGTTAGAGA+TGG | 0.613468 | 3_4:-59532991 | Msa0510480:CDS |
| TTAGGTATATCAAAGAAGTG+TGG | 0.615080 | 3_4:-59533434 | Msa0510480:CDS |
| CTAGTAGCTCTTGATCCACA+AGG | 0.616181 | 3_4:-59533390 | Msa0510480:CDS |
| TGCACTCAATAAGCTAGTGA+AGG | 0.616891 | 3_4:-59534625 | Msa0510480:CDS |
| TCAGCACAAACAACTTTCTG+AGG | 0.617186 | 3_4:+59532540 | None:intergenic |
| ATCTTCAATCAACAATGCCA+TGG | 0.617760 | 3_4:-59533497 | Msa0510480:CDS |
| TACAAAGATGCAAGATCTAG+GGG | 0.620217 | 3_4:-59533600 | Msa0510480:CDS |
| ATCGATTTCACGACCATCAG+GGG | 0.621216 | 3_4:+59536022 | None:intergenic |
| CAGTTGTAGACAAAGCAACA+TGG | 0.623036 | 3_4:-59533548 | Msa0510480:CDS |
| GGTATTCCACCAGTACTCCC+AGG | 0.624299 | 3_4:+59532561 | None:intergenic |
| TTTGTAGTTCCATCTATAAG+CGG | 0.628312 | 3_4:+59533836 | None:intergenic |
| TCTTCTGAAATATATTCAGA+TGG | 0.628420 | 3_4:+59534558 | None:intergenic |
| ACGTACAATTGGTGACTGCA+GGG | 0.629728 | 3_4:+59532439 | None:intergenic |
| ATGGAGGCGAAGATCTAGAG+TGG | 0.631690 | 3_4:-59533055 | Msa0510480:CDS |
| ATAAGCCTATTACAATGATG+TGG | 0.632932 | 3_4:+59532588 | None:intergenic |
| TGTAGTTCCATCTATAAGCG+GGG | 0.634747 | 3_4:+59533838 | None:intergenic |
| GGTTGGGCAATATTCTGTAG+AGG | 0.638960 | 3_4:-59532744 | Msa0510480:CDS |
| GGGTGAGACACACTATGAGA+TGG | 0.639752 | 3_4:-59533580 | Msa0510480:CDS |
| GGATCACGAACACTGTGCCA+TGG | 0.642952 | 3_4:+59533480 | None:intergenic |
| AAAGTTGTTTGTGCTGAATG+TGG | 0.644249 | 3_4:-59532534 | Msa0510480:CDS |
| AAAATCATATGTCTATATGG+AGG | 0.645145 | 3_4:-59533071 | Msa0510480:CDS |
| GCGAGAAAGAAGAATCCTTG+TGG | 0.645436 | 3_4:-59533299 | Msa0510480:CDS |
| CTTCACATGATATGGATTTG+GGG | 0.646725 | 3_4:-59533345 | Msa0510480:CDS |
| AAGCATAGGATTGAACAAGA+TGG | 0.647135 | 3_4:-59532654 | Msa0510480:CDS |
| TCATGCAGTCAACACATCGA+TGG | 0.651245 | 3_4:+59532335 | None:intergenic |
| TAAGTCTTGAAGTACTAAGG+AGG | 0.653213 | 3_4:-59533692 | Msa0510480:CDS |
| GAAGCAGCTGATAACTGGCG+AGG | 0.655882 | 3_4:+59536131 | None:intergenic |
| GTAGTTCCATCTATAAGCGG+GGG | 0.657696 | 3_4:+59533839 | None:intergenic |
| GCACTTGCAACAGACATAGG+AGG | 0.680826 | 3_4:+59534531 | None:intergenic |
| TTATTGAGTGCATCAAACTG+TGG | 0.686554 | 3_4:+59534636 | None:intergenic |
| TCACACAATCAGCGCATCAG+TGG | 0.704079 | 3_4:-59532414 | Msa0510480:three_prime_UTR |
| TTGTACTCAAAACTACAACA+TGG | 0.705926 | 3_4:-59532837 | Msa0510480:CDS |
| AGATGCACATGCATCAACAA+TGG | 0.729582 | 3_4:-59534844 | Msa0510480:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATCAATAAATTAGTAATA+TGG | + | chr3_4:59533089-59533108 | None:intergenic | 10.0% |
| !! | GTTAATTATGTTATATTTAT+AGG | - | chr3_4:59536006-59536025 | Msa0510480:CDS | 10.0% |
| !! | ATAAACTGATTAAAAACAAA+TGG | + | chr3_4:59532534-59532553 | None:intergenic | 15.0% |
| !!! | ACATATTTTTTGAGTTATTT+AGG | + | chr3_4:59532808-59532827 | None:intergenic | 15.0% |
| !! | TGATCAATAATAAATACAAA+AGG | - | chr3_4:59533111-59533130 | Msa0510480:intron | 15.0% |
| !! | AGATAACTAACTATAATTAT+TGG | - | chr3_4:59533178-59533197 | Msa0510480:intron | 15.0% |
| !! | ATCAATTGGAAAAATTATAT+TGG | - | chr3_4:59533312-59533331 | Msa0510480:CDS | 15.0% |
| !!! | ACATAATTTGAAACTTAATT+TGG | - | chr3_4:59534043-59534062 | Msa0510480:intron | 15.0% |
| !! | ACTTCTTCATATATTTATTT+AGG | - | chr3_4:59535963-59535982 | Msa0510480:CDS | 15.0% |
| !! | GTTATCTATTTATTTATGTA+AGG | - | chr3_4:59536068-59536087 | Msa0510480:CDS | 15.0% |
| !!! | GTGTTTTTTTTTTTTTTTGA+AGG | - | chr3_4:59536170-59536189 | Msa0510480:five_prime_UTR | 15.0% |
| !!! | ATTGTTTTTTATGTTCCATT+TGG | - | chr3_4:59532587-59532606 | Msa0510480:CDS | 20.0% |
| !!! | AATCTCTAAACTTTTATGAA+AGG | - | chr3_4:59532729-59532748 | Msa0510480:CDS | 20.0% |
| !!! | TTTAGTTATTACTGTTGTTT+AGG | - | chr3_4:59532769-59532788 | Msa0510480:CDS | 20.0% |
| !!! | ACTAACTATAATTATTGGTT+TGG | - | chr3_4:59533183-59533202 | Msa0510480:intron | 20.0% |
| !!! | CAATTGATCATTTTCATTTT+AGG | + | chr3_4:59533300-59533319 | None:intergenic | 20.0% |
| !! | CTAAAATGAAAATGATCAAT+TGG | - | chr3_4:59533298-59533317 | Msa0510480:CDS | 20.0% |
| !! | ATTAAGTTTCACAAACAAAA+GGG | + | chr3_4:59534443-59534462 | None:intergenic | 20.0% |
| !! | AATTAAGTTTCACAAACAAA+AGG | + | chr3_4:59534444-59534463 | None:intergenic | 20.0% |
| !!! | CAATATTTTAATTAACCATG+CGG | + | chr3_4:59534478-59534497 | None:intergenic | 20.0% |
| !! | TTAATATAATCATTCAATGC+TGG | + | chr3_4:59535591-59535610 | None:intergenic | 20.0% |
| !!! | AGCATTGAATGATTATATTA+AGG | - | chr3_4:59535590-59535609 | Msa0510480:CDS | 20.0% |
| !!! | TATTTAGGTTTGAATAATGT+TGG | - | chr3_4:59535978-59535997 | Msa0510480:CDS | 20.0% |
| !! | ATCTATTTATTTATGTAAGG+TGG | - | chr3_4:59536071-59536090 | Msa0510480:CDS | 20.0% |
| !! | TCTATTTATTTATGTAAGGT+GGG | - | chr3_4:59536072-59536091 | Msa0510480:CDS | 20.0% |
| !!! | ACAACAGGGAAAATATTTTT+TGG | + | chr3_4:59532022-59532041 | None:intergenic | 25.0% |
| ! | TCAAGATTTCATCAACAATT+TGG | + | chr3_4:59532230-59532249 | None:intergenic | 25.0% |
| !! | AGTTTGACCAATGATTATTT+TGG | - | chr3_4:59532439-59532458 | Msa0510480:three_prime_UTR | 25.0% |
| ! | TATACTTATCTTTGATTCCA+AGG | - | chr3_4:59532891-59532910 | Msa0510480:CDS | 25.0% |
| !!! | TCGTCTTCTTTATTTTCATA+TGG | + | chr3_4:59533155-59533174 | None:intergenic | 25.0% |
| ! | GATTCTTGTGAATGTATAAA+AGG | - | chr3_4:59533235-59533254 | Msa0510480:intron | 25.0% |
| ! | ATTGGAAAAATTATATTGGC+TGG | - | chr3_4:59533316-59533335 | Msa0510480:CDS | 25.0% |
| !!! | CTGTTATTTTTGGAGAATTT+TGG | - | chr3_4:59533457-59533476 | Msa0510480:CDS | 25.0% |
| !!! | TCTTCTGAAATATATTCAGA+TGG | + | chr3_4:59533657-59533676 | None:intergenic | 25.0% |
| ! | GCAATAAGAATCTTTAATTC+AGG | + | chr3_4:59534166-59534185 | None:intergenic | 25.0% |
| ! | TAGATGGAACTACAAAATTA+AGG | - | chr3_4:59534383-59534402 | Msa0510480:intron | 25.0% |
| ! | AGATGGAACTACAAAATTAA+GGG | - | chr3_4:59534384-59534403 | Msa0510480:intron | 25.0% |
| ! | GACACTTAATAATATGACAT+AGG | + | chr3_4:59535022-59535041 | None:intergenic | 25.0% |
| ! | GGAAAAATCATATGTCTATA+TGG | - | chr3_4:59535138-59535157 | Msa0510480:intron | 25.0% |
| ! | AAAATCATATGTCTATATGG+AGG | - | chr3_4:59535141-59535160 | Msa0510480:intron | 25.0% |
| !!! | GTTTGAGAGATTTTGATAAA+TGG | - | chr3_4:59535535-59535554 | Msa0510480:CDS | 25.0% |
| !!! | ATTTTGATAAATGGAAGCAT+AGG | - | chr3_4:59535544-59535563 | Msa0510480:CDS | 25.0% |
| ! | CTATTTATTTATGTAAGGTG+GGG | - | chr3_4:59536073-59536092 | Msa0510480:CDS | 25.0% |
| ! | AAATGTTTATGTTTACTAGC+TGG | - | chr3_4:59536098-59536117 | Msa0510480:CDS | 25.0% |
| ! | ATTAGCAAGCTTAAAACAAA+TGG | + | chr3_4:59536145-59536164 | None:intergenic | 25.0% |
| ! | TTTTTGCCTTTTCAGTAACA+TGG | - | chr3_4:59532047-59532066 | Msa0510480:intron | 30.0% |
| TCATCAACAATTTGGATAAG+TGG | + | chr3_4:59532222-59532241 | None:intergenic | 30.0% | |
| ACTCTGACCAAAATAATCAT+TGG | + | chr3_4:59532449-59532468 | None:intergenic | 30.0% | |
| !!! | TTTTTTATGTTCCATTTGGC+AGG | - | chr3_4:59532591-59532610 | Msa0510480:CDS | 30.0% |
| TAAACATGAGCAAGATACAT+TGG | - | chr3_4:59532615-59532634 | Msa0510480:CDS | 30.0% | |
| CATTAACAAAATTTCGTGTG+AGG | - | chr3_4:59532690-59532709 | Msa0510480:CDS | 30.0% | |
| ATCAAAAGCTAAGTTAAGAG+AGG | + | chr3_4:59532867-59532886 | None:intergenic | 30.0% | |
| ! | TGTCATTTCTGTCGAAATTT+CGG | - | chr3_4:59533265-59533284 | Msa0510480:CDS | 30.0% |
| ATATTCCTATTGCTACCTAT+TGG | - | chr3_4:59533706-59533725 | Msa0510480:intron | 30.0% | |
| TATTCCTATTGCTACCTATT+GGG | - | chr3_4:59533707-59533726 | Msa0510480:intron | 30.0% | |
| ! | AACACGATATCTCTTTAAAG+TGG | + | chr3_4:59534097-59534116 | None:intergenic | 30.0% |
| AGATATCGTGTTTAGCAATA+CGG | - | chr3_4:59534105-59534124 | Msa0510480:intron | 30.0% | |
| ! | TTTAGCAATACGGAACTTTT+TGG | - | chr3_4:59534115-59534134 | Msa0510480:intron | 30.0% |
| ! | AGATGAAAAGAAGCATATTG+AGG | - | chr3_4:59534261-59534280 | Msa0510480:CDS | 30.0% |
| TTTGTAGTTCCATCTATAAG+CGG | + | chr3_4:59534379-59534398 | None:intergenic | 30.0% | |
| AATTATTCTATTCTACCGCA+TGG | - | chr3_4:59534460-59534479 | Msa0510480:CDS | 30.0% | |
| TATACAAAGATGCAAGATCT+AGG | - | chr3_4:59534610-59534629 | Msa0510480:CDS | 30.0% | |
| ATACAAAGATGCAAGATCTA+GGG | - | chr3_4:59534611-59534630 | Msa0510480:CDS | 30.0% | |
| ACTGATGGTTCAATAATGAA+AGG | + | chr3_4:59534756-59534775 | None:intergenic | 30.0% | |
| TTATTGAACCATCAGTGATT+AGG | - | chr3_4:59534760-59534779 | Msa0510480:CDS | 30.0% | |
| TTGATATACCTAATCACTGA+TGG | + | chr3_4:59534771-59534790 | None:intergenic | 30.0% | |
| TTAGGTATATCAAAGAAGTG+TGG | - | chr3_4:59534778-59534797 | Msa0510480:CDS | 30.0% | |
| !!! | TATCATGTGAAGAGCATTTT+GGG | + | chr3_4:59534859-59534878 | None:intergenic | 30.0% |
| !!! | ATATCATGTGAAGAGCATTT+TGG | + | chr3_4:59534860-59534879 | None:intergenic | 30.0% |
| AAAATGCTCTTCACATGATA+TGG | - | chr3_4:59534859-59534878 | Msa0510480:CDS | 30.0% | |
| TCTTCACATGATATGGATTT+GGG | - | chr3_4:59534866-59534885 | Msa0510480:CDS | 30.0% | |
| !! | ACTGAATTTCTTGTTGTTGA+AGG | + | chr3_4:59535298-59535317 | None:intergenic | 30.0% |
| !!! | TGACATCAATTTGGTTCTTT+TGG | - | chr3_4:59535334-59535353 | Msa0510480:intron | 30.0% |
| !!! | GACATCAATTTGGTTCTTTT+GGG | - | chr3_4:59535335-59535354 | Msa0510480:intron | 30.0% |
| TTGTACTCAAAACTACAACA+TGG | - | chr3_4:59535375-59535394 | Msa0510480:intron | 30.0% | |
| ATAAGCCTATTACAATGATG+TGG | + | chr3_4:59535627-59535646 | None:intergenic | 30.0% | |
| !! | CATTTGGTCTTAATCATCCT+AGG | - | chr3_4:59532394-59532413 | Msa0510480:three_prime_UTR | 35.0% |
| ! | GTCAAACTTTACTTAGCTCT+CGG | + | chr3_4:59532427-59532446 | None:intergenic | 35.0% |
| ! | TTTTGGTCAGAGTTCAAACT+CGG | - | chr3_4:59532456-59532475 | Msa0510480:three_prime_UTR | 35.0% |
| CAGTTAAGGTCATATCAATC+AGG | + | chr3_4:59532487-59532506 | None:intergenic | 35.0% | |
| TGGTTAACGAGATTCAGTTA+AGG | + | chr3_4:59532501-59532520 | None:intergenic | 35.0% | |
| ATGTAATGTAAAGCTGTCCT+TGG | + | chr3_4:59532911-59532930 | None:intergenic | 35.0% | |
| !! | AGCTTTAAGAAAGAATGCAG+TGG | - | chr3_4:59533044-59533063 | Msa0510480:CDS | 35.0% |
| AATTTCGACAGAAATGACAC+AGG | + | chr3_4:59533264-59533283 | None:intergenic | 35.0% | |
| ATTACCTATCTAGCTATCCA+TGG | - | chr3_4:59533400-59533419 | Msa0510480:CDS | 35.0% | |
| AATAACAGCAAATGCTGCTA+AGG | + | chr3_4:59533445-59533464 | None:intergenic | 35.0% | |
| !!! | GCAGCATTTGCTGTTATTTT+TGG | - | chr3_4:59533447-59533466 | Msa0510480:CDS | 35.0% |
| ACAGAATTCTCTACAATGTC+AGG | + | chr3_4:59533546-59533565 | None:intergenic | 35.0% | |
| TTATTGAGTGCATCAAACTG+TGG | + | chr3_4:59533579-59533598 | None:intergenic | 35.0% | |
| CTTGAATTCAACAATGCACA+TGG | + | chr3_4:59533628-59533647 | None:intergenic | 35.0% | |
| CATGTGCATTGTTGAATTCA+AGG | - | chr3_4:59533626-59533645 | Msa0510480:CDS | 35.0% | |
| AATACTTCTGATGACCCAAT+AGG | + | chr3_4:59533724-59533743 | None:intergenic | 35.0% | |
| TCACAAATTGCAAGTCTCAT+AGG | - | chr3_4:59533756-59533775 | Msa0510480:intron | 35.0% | |
| CACAAATTGCAAGTCTCATA+GGG | - | chr3_4:59533757-59533776 | Msa0510480:intron | 35.0% | |
| AAATAGCCCTGCAAAAAGAA+GGG | + | chr3_4:59533903-59533922 | None:intergenic | 35.0% | |
| TAATGAACTCACCTATAGCT+TGG | + | chr3_4:59534017-59534036 | None:intergenic | 35.0% | |
| ! | TTTTCATCTGTACCAGAGTA+AGG | + | chr3_4:59534250-59534269 | None:intergenic | 35.0% |
| ! | TATTGAGGCATTTCTCTATC+TGG | - | chr3_4:59534276-59534295 | Msa0510480:CDS | 35.0% |
| ATCGTCCTTTGCATAAATCA+AGG | + | chr3_4:59534350-59534369 | None:intergenic | 35.0% | |
| TTGTAGTTCCATCTATAAGC+GGG | + | chr3_4:59534378-59534397 | None:intergenic | 35.0% | |
| ! | AGGTAAGTCTTGAAGTACTA+AGG | - | chr3_4:59534517-59534536 | Msa0510480:CDS | 35.0% |
| ! | TAAGTCTTGAAGTACTAAGG+AGG | - | chr3_4:59534520-59534539 | Msa0510480:CDS | 35.0% |
| TACAAAGATGCAAGATCTAG+GGG | - | chr3_4:59534612-59534631 | Msa0510480:CDS | 35.0% | |
| ATCTTCAATCAACAATGCCA+TGG | - | chr3_4:59534715-59534734 | Msa0510480:CDS | 35.0% | |
| CTCTTCACATGATATGGATT+TGG | - | chr3_4:59534865-59534884 | Msa0510480:CDS | 35.0% | |
| CTTCACATGATATGGATTTG+GGG | - | chr3_4:59534867-59534886 | Msa0510480:CDS | 35.0% | |
| GATATGGATTTGGGGAAATT+TGG | - | chr3_4:59534875-59534894 | Msa0510480:intron | 35.0% | |
| TTCCAAACGTGACATCAATT+TGG | - | chr3_4:59535325-59535344 | Msa0510480:intron | 35.0% | |
| AACCAAATTGATGTCACGTT+TGG | + | chr3_4:59535330-59535349 | None:intergenic | 35.0% | |
| ACTCAAAACTACAACATGGT+AGG | - | chr3_4:59535379-59535398 | Msa0510480:intron | 35.0% | |
| AAGCATAGGATTGAACAAGA+TGG | - | chr3_4:59535558-59535577 | Msa0510480:CDS | 35.0% | |
| ATAGGATTGAACAAGATGGT+TGG | - | chr3_4:59535562-59535581 | Msa0510480:CDS | 35.0% | |
| TAGGATTGAACAAGATGGTT+GGG | - | chr3_4:59535563-59535582 | Msa0510480:CDS | 35.0% | |
| AGCAACCACATCATTGTAAT+AGG | - | chr3_4:59535619-59535638 | Msa0510480:intron | 35.0% | |
| TGTAATAGGCTTATTCTTCC+TGG | - | chr3_4:59535633-59535652 | Msa0510480:intron | 35.0% | |
| GTAATAGGCTTATTCTTCCT+GGG | - | chr3_4:59535634-59535653 | Msa0510480:intron | 35.0% | |
| AAAGTTGTTTGTGCTGAATG+TGG | - | chr3_4:59535678-59535697 | Msa0510480:intron | 35.0% | |
| ATTGTGTGAACACGTACAAT+TGG | + | chr3_4:59535787-59535806 | None:intergenic | 35.0% | |
| AGGCAAAAACGAACACAACA+GGG | + | chr3_4:59532036-59532055 | None:intergenic | 40.0% | |
| AAGGCAAAAACGAACACAAC+AGG | + | chr3_4:59532037-59532056 | None:intergenic | 40.0% | |
| CACTAGCCATGTTACTGAAA+AGG | + | chr3_4:59532056-59532075 | None:intergenic | 40.0% | |
| TGTTAGAAGCAGCTGATAAC+TGG | + | chr3_4:59532089-59532108 | None:intergenic | 40.0% | |
| ! | GGATTGAACTTGTTTCGTCA+TGG | + | chr3_4:59532163-59532182 | None:intergenic | 40.0% |
| !! | AATCATTGCTCGAAGTGTTG+AGG | - | chr3_4:59532254-59532273 | Msa0510480:three_prime_UTR | 40.0% |
| !! | ATCATTGCTCGAAGTGTTGA+GGG | - | chr3_4:59532255-59532274 | Msa0510480:three_prime_UTR | 40.0% |
| AAACAAATGGCACATGAGAG+TGG | + | chr3_4:59532521-59532540 | None:intergenic | 40.0% | |
| CTCATGTTTAACCTGCCAAA+TGG | + | chr3_4:59532605-59532624 | None:intergenic | 40.0% | |
| ATTTGATATGCTAGATGCGC+TGG | - | chr3_4:59532660-59532679 | Msa0510480:CDS | 40.0% | |
| AGATGCACATGCATCAACAA+TGG | - | chr3_4:59533368-59533387 | Msa0510480:CDS | 40.0% | |
| ! | AACACAACTTTTGCATGCCA+TGG | + | chr3_4:59533420-59533439 | None:intergenic | 40.0% |
| AAACACACTTGCCAAATCTG+TGG | - | chr3_4:59533503-59533522 | Msa0510480:CDS | 40.0% | |
| CAATGTCAGGTAGTTGCTTA+AGG | + | chr3_4:59533533-59533552 | None:intergenic | 40.0% | |
| TGCACTCAATAAGCTAGTGA+AGG | - | chr3_4:59533587-59533606 | Msa0510480:CDS | 40.0% | |
| ATGACCCAATAGGTAGCAAT+AGG | + | chr3_4:59533714-59533733 | None:intergenic | 40.0% | |
| !! | TTGGGTCATCAGAAGTATTG+TGG | - | chr3_4:59533725-59533744 | Msa0510480:intron | 40.0% |
| TGAGAAATGAGTAAGCTAGC+TGG | - | chr3_4:59533781-59533800 | Msa0510480:intron | 40.0% | |
| ! | ATGATGACCCTTCTTTTTGC+AGG | - | chr3_4:59533893-59533912 | Msa0510480:CDS | 40.0% |
| ! | TGATGACCCTTCTTTTTGCA+GGG | - | chr3_4:59533894-59533913 | Msa0510480:CDS | 40.0% |
| GAAATAGCCCTGCAAAAAGA+AGG | + | chr3_4:59533904-59533923 | None:intergenic | 40.0% | |
| ! | GGTTAAAGACAGCTCTTTTC+AGG | + | chr3_4:59534145-59534164 | None:intergenic | 40.0% |
| !! | TCTGGTACATCTTTTCGAGA+CGG | - | chr3_4:59534294-59534313 | Msa0510480:CDS | 40.0% |
| GAGAGCCTTGATTTATGCAA+AGG | - | chr3_4:59534342-59534361 | Msa0510480:intron | 40.0% | |
| TGTAGTTCCATCTATAAGCG+GGG | + | chr3_4:59534377-59534396 | None:intergenic | 40.0% | |
| GACTTATACGCATGACAAAC+AGG | - | chr3_4:59534497-59534516 | Msa0510480:CDS | 40.0% | |
| AGACACACTATGAGATGGTA+TGG | - | chr3_4:59534637-59534656 | Msa0510480:CDS | 40.0% | |
| !! | CATGTTGCTTTGTCTACAAC+TGG | + | chr3_4:59534666-59534685 | None:intergenic | 40.0% |
| CAGTTGTAGACAAAGCAACA+TGG | - | chr3_4:59534664-59534683 | Msa0510480:CDS | 40.0% | |
| CTTCTTTCTCGCTTGTGAAA+GGG | + | chr3_4:59534905-59534924 | None:intergenic | 40.0% | |
| TCTTCTTTCTCGCTTGTGAA+AGG | + | chr3_4:59534906-59534925 | None:intergenic | 40.0% | |
| ! | TCCTTGTTGTAGATGACAGA+AGG | - | chr3_4:59535117-59535136 | Msa0510480:intron | 40.0% |
| TCCTTCTGTCATCTACAACA+AGG | + | chr3_4:59535121-59535140 | None:intergenic | 40.0% | |
| ! | TAGCAACTTCGAGTTAGAGA+TGG | - | chr3_4:59535221-59535240 | Msa0510480:intron | 40.0% |
| GAGTTAGAGATGGTCTATGT+AGG | - | chr3_4:59535231-59535250 | Msa0510480:intron | 40.0% | |
| TCAGCACAAACAACTTTCTG+AGG | + | chr3_4:59535675-59535694 | None:intergenic | 40.0% | |
| TACTAGCTGGCAAGCTATTA+AGG | - | chr3_4:59536111-59536130 | Msa0510480:CDS | 40.0% | |
| ! | ATCGATTTCACGACCATCAG+GGG | + | chr3_4:59532193-59532212 | None:intergenic | 45.0% |
| !! | CATCGATTTCACGACCATCA+GGG | + | chr3_4:59532194-59532213 | None:intergenic | 45.0% |
| !! | ACATCGATTTCACGACCATC+AGG | + | chr3_4:59532195-59532214 | None:intergenic | 45.0% |
| ! | GCATGCATGCATGTGTCATT+TGG | - | chr3_4:59532378-59532397 | Msa0510480:three_prime_UTR | 45.0% |
| ! | ATTGGAAACTGCTGCTGCTT+TGG | - | chr3_4:59532633-59532652 | Msa0510480:CDS | 45.0% |
| CAGCTATCATGCAAATGCTC+TGG | - | chr3_4:59533339-59533358 | Msa0510480:CDS | 45.0% | |
| CTATCATGCAAATGCTCTGG+AGG | - | chr3_4:59533342-59533361 | Msa0510480:CDS | 45.0% | |
| CATGCCATGGATAGCTAGAT+AGG | + | chr3_4:59533407-59533426 | None:intergenic | 45.0% | |
| CTTAAGGAGAGCCACAGATT+TGG | + | chr3_4:59533517-59533536 | None:intergenic | 45.0% | |
| TGAGCACTTGCAACAGACAT+AGG | + | chr3_4:59533687-59533706 | None:intergenic | 45.0% | |
| TTTCATCAGCCTCAGAAGCA+TGG | - | chr3_4:59533920-59533939 | Msa0510480:CDS | 45.0% | |
| ! | TTCATCAGCCTCAGAAGCAT+GGG | - | chr3_4:59533921-59533940 | Msa0510480:CDS | 45.0% |
| AGATAACTCCCATGCTTCTG+AGG | + | chr3_4:59533932-59533951 | None:intergenic | 45.0% | |
| ! | CTTGGTAGCAAAGAGCAAGT+TGG | + | chr3_4:59533999-59534018 | None:intergenic | 45.0% |
| GCTCTTTGCTACCAAGCTAT+AGG | - | chr3_4:59534003-59534022 | Msa0510480:intron | 45.0% | |
| TAACAATCGCGTCCTTACTC+TGG | - | chr3_4:59534235-59534254 | Msa0510480:CDS | 45.0% | |
| GATATTCCCCCGCTTATAGA+TGG | - | chr3_4:59534367-59534386 | Msa0510480:intron | 45.0% | |
| GTAGTTCCATCTATAAGCGG+GGG | + | chr3_4:59534376-59534395 | None:intergenic | 45.0% | |
| CTAGTAGCTCTTGATCCACA+AGG | - | chr3_4:59534822-59534841 | Msa0510480:CDS | 45.0% | |
| TGGGAAGACAATCTTCCTTG+TGG | + | chr3_4:59534840-59534859 | None:intergenic | 45.0% | |
| TTTCTCGCTTGTGAAAGGGA+AGG | + | chr3_4:59534901-59534920 | None:intergenic | 45.0% | |
| GCGAGAAAGAAGAATCCTTG+TGG | - | chr3_4:59534913-59534932 | Msa0510480:intron | 45.0% | |
| CCAAATCTCTTGCTTCCACA+AGG | + | chr3_4:59534931-59534950 | None:intergenic | 45.0% | |
| CCTTGTGGAAGCAAGAGATT+TGG | - | chr3_4:59534928-59534947 | Msa0510480:intron | 45.0% | |
| ! | AGCCTTGAGTTGCTTGTTGA+TGG | - | chr3_4:59534951-59534970 | Msa0510480:intron | 45.0% |
| TGCCATCAACAAGCAACTCA+AGG | + | chr3_4:59534956-59534975 | None:intergenic | 45.0% | |
| !!! | TGGCATTGATCCTGCACTTT+TGG | - | chr3_4:59534971-59534990 | Msa0510480:intron | 45.0% |
| ! | TTGATCCTGCACTTTTGGAC+TGG | - | chr3_4:59534976-59534995 | Msa0510480:intron | 45.0% |
| ! | TGATCCTGCACTTTTGGACT+GGG | - | chr3_4:59534977-59534996 | Msa0510480:intron | 45.0% |
| ATGACAGTGCTTAGCTTCGA+CGG | - | chr3_4:59535435-59535454 | Msa0510480:intron | 45.0% | |
| GGTTGGGCAATATTCTGTAG+AGG | - | chr3_4:59535468-59535487 | Msa0510480:intron | 45.0% | |
| CTGTAGAGGACCATCTGAAA+TGG | - | chr3_4:59535482-59535501 | Msa0510480:intron | 45.0% | |
| ! | AGGACCATCTGAAATGGCTA+GGG | - | chr3_4:59535488-59535507 | Msa0510480:intron | 45.0% |
| TTAGCCCTAGCCATTTCAGA+TGG | + | chr3_4:59535495-59535514 | None:intergenic | 45.0% | |
| ! | TCTGAAATGGCTAGGGCTAA+AGG | - | chr3_4:59535495-59535514 | Msa0510480:intron | 45.0% |
| ! | CTTATTCTTCCTGGGAGTAC+TGG | - | chr3_4:59535642-59535661 | Msa0510480:intron | 45.0% |
| TGCTGAATGTGGTCGTCAAA+TGG | - | chr3_4:59535689-59535708 | Msa0510480:intron | 45.0% | |
| ! | ACGTACAATTGGTGACTGCA+GGG | + | chr3_4:59535776-59535795 | None:intergenic | 45.0% |
| TCATGCAGTCAACACATCGA+TGG | + | chr3_4:59535880-59535899 | None:intergenic | 45.0% | |
| !!! | TTTTTTTTAAATGATAATTA+AGG | - | chr3_4:59533862-59533881 | Msa0510480:CDS | 5.0% |
| !! | TTAATTATGTTATATTTATA+GGG | - | chr3_4:59536007-59536026 | Msa0510480:CDS | 5.0% |
| !! | TCATGCAAATGCTCTGGAGG+TGG | - | chr3_4:59533345-59533364 | Msa0510480:CDS | 50.0% |
| GCACTTGCAACAGACATAGG+AGG | + | chr3_4:59533684-59533703 | None:intergenic | 50.0% | |
| GGGTGAGACACACTATGAGA+TGG | - | chr3_4:59534632-59534651 | Msa0510480:CDS | 50.0% | |
| ! | CATACCCAGTCCAAAAGTGC+AGG | + | chr3_4:59534984-59535003 | None:intergenic | 50.0% |
| ATGGAGGCGAAGATCTAGAG+TGG | - | chr3_4:59535157-59535176 | Msa0510480:intron | 50.0% | |
| ! | GAGGACCATCTGAAATGGCT+AGG | - | chr3_4:59535487-59535506 | Msa0510480:intron | 50.0% |
| !! | ATTCTTCCTGGGAGTACTGG+TGG | - | chr3_4:59535645-59535664 | Msa0510480:intron | 50.0% |
| TGCAGGGAATCACGATTCGA+CGG | + | chr3_4:59535760-59535779 | None:intergenic | 50.0% | |
| ! | CACGTACAATTGGTGACTGC+AGG | + | chr3_4:59535777-59535796 | None:intergenic | 50.0% |
| TCACACAATCAGCGCATCAG+TGG | - | chr3_4:59535798-59535817 | Msa0510480:intron | 50.0% | |
| GAAGCAGCTGATAACTGGCG+AGG | + | chr3_4:59532084-59532103 | None:intergenic | 55.0% | |
| CAATCCACTCATGCCCCTGA+TGG | - | chr3_4:59532177-59532196 | Msa0510480:three_prime_UTR | 55.0% | |
| TAGCTCTCGGCTGAACTCCT+AGG | + | chr3_4:59532414-59532433 | None:intergenic | 55.0% | |
| GGATCACGAACACTGTGCCA+TGG | + | chr3_4:59534735-59534754 | None:intergenic | 55.0% | |
| AGCTTCGACGGTAGTGATCG+AGG | - | chr3_4:59535447-59535466 | Msa0510480:intron | 55.0% | |
| TCGACGGTAGTGATCGAGGT+TGG | - | chr3_4:59535451-59535470 | Msa0510480:intron | 55.0% | |
| CGACGGTAGTGATCGAGGTT+GGG | - | chr3_4:59535452-59535471 | Msa0510480:intron | 55.0% | |
| GGTATTCCACCAGTACTCCC+AGG | + | chr3_4:59535654-59535673 | None:intergenic | 55.0% | |
| GCAGGGAATCACGATTCGAC+GGG | + | chr3_4:59535759-59535778 | None:intergenic | 55.0% | |
| ! | ACGACCATCAGGGGCATGAG+TGG | + | chr3_4:59532184-59532203 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 59532017 | 59536217 | 59532017 | ID=Msa0510480;Name=Msa0510480 |
| chr3_4 | mRNA | 59532017 | 59536217 | 59532017 | ID=Msa0510480-mRNA-1;Parent=Msa0510480;Name=Msa0510480-mRNA-1;_AED=0.08;_eAED=0.08;_QI=49|1|1|1|0.85|0.75|8|439|706 |
| chr3_4 | exon | 59532017 | 59532039 | 59532017 | ID=Msa0510480-mRNA-1:exon:14052;Parent=Msa0510480-mRNA-1 |
| chr3_4 | exon | 59532072 | 59533105 | 59532072 | ID=Msa0510480-mRNA-1:exon:14051;Parent=Msa0510480-mRNA-1 |
| chr3_4 | exon | 59533236 | 59533715 | 59533236 | ID=Msa0510480-mRNA-1:exon:14050;Parent=Msa0510480-mRNA-1 |
| chr3_4 | exon | 59533829 | 59533971 | 59533829 | ID=Msa0510480-mRNA-1:exon:14049;Parent=Msa0510480-mRNA-1 |
| chr3_4 | exon | 59534210 | 59534319 | 59534210 | ID=Msa0510480-mRNA-1:exon:14048;Parent=Msa0510480-mRNA-1 |
| chr3_4 | exon | 59534444 | 59534892 | 59534444 | ID=Msa0510480-mRNA-1:exon:14047;Parent=Msa0510480-mRNA-1 |
| chr3_4 | exon | 59535523 | 59535621 | 59535523 | ID=Msa0510480-mRNA-1:exon:14046;Parent=Msa0510480-mRNA-1 |
| chr3_4 | exon | 59535947 | 59536217 | 59535947 | ID=Msa0510480-mRNA-1:exon:14045;Parent=Msa0510480-mRNA-1 |
| chr3_4 | five_prime_UTR | 59536169 | 59536217 | 59536169 | ID=Msa0510480-mRNA-1:five_prime_utr;Parent=Msa0510480-mRNA-1 |
| chr3_4 | CDS | 59535947 | 59536168 | 59535947 | ID=Msa0510480-mRNA-1:cds;Parent=Msa0510480-mRNA-1 |
| chr3_4 | CDS | 59535523 | 59535621 | 59535523 | ID=Msa0510480-mRNA-1:cds;Parent=Msa0510480-mRNA-1 |
| chr3_4 | CDS | 59534444 | 59534892 | 59534444 | ID=Msa0510480-mRNA-1:cds;Parent=Msa0510480-mRNA-1 |
| chr3_4 | CDS | 59534210 | 59534319 | 59534210 | ID=Msa0510480-mRNA-1:cds;Parent=Msa0510480-mRNA-1 |
| chr3_4 | CDS | 59533829 | 59533971 | 59533829 | ID=Msa0510480-mRNA-1:cds;Parent=Msa0510480-mRNA-1 |
| chr3_4 | CDS | 59533236 | 59533715 | 59533236 | ID=Msa0510480-mRNA-1:cds;Parent=Msa0510480-mRNA-1 |
| chr3_4 | CDS | 59532488 | 59533105 | 59532488 | ID=Msa0510480-mRNA-1:cds;Parent=Msa0510480-mRNA-1 |
| chr3_4 | three_prime_UTR | 59532072 | 59532487 | 59532072 | ID=Msa0510480-mRNA-1:three_prime_utr;Parent=Msa0510480-mRNA-1 |
| chr3_4 | three_prime_UTR | 59532017 | 59532039 | 59532017 | ID=Msa0510480-mRNA-1:three_prime_utr;Parent=Msa0510480-mRNA-1 |
| Gene Sequence |
| Protein sequence |
