AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0258910

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0258910 MtrunA17_Chr2g0321741 85.821 402 11 3 1 402 1 356 0.0 695
Msa0258910 MtrunA17_Chr3g0128111 51.705 176 78 5 14 184 36 209 1.25e-53 178
Msa0258910 MtrunA17_Chr5g0433781 51.829 164 77 2 13 174 1 164 1.53e-53 188
Msa0258910 MtrunA17_Chr3g0128151 52.326 172 78 4 1 168 4 175 2.28e-53 186
Msa0258910 MtrunA17_Chr5g0428991 54.777 157 68 3 10 163 16 172 3.23e-53 187
Msa0258910 MtrunA17_Chr2g0309891 52.532 158 72 2 13 167 1 158 4.61e-53 180
Msa0258910 MtrunA17_Chr3g0109821 50.279 179 76 5 13 179 1 178 1.12e-51 183
Msa0258910 MtrunA17_Chr6g0481091 47.674 172 83 3 13 182 1 167 2.33e-51 172
Msa0258910 MtrunA17_Chr5g0400461 46.032 189 80 4 13 181 1 187 3.21e-50 172
Msa0258910 MtrunA17_Chr4g0054791 48.023 177 82 4 13 184 1 172 8.90e-50 170
Msa0258910 MtrunA17_Chr3g0130101 49.324 148 73 2 18 163 7 154 1.50e-48 168
Msa0258910 MtrunA17_Chr2g0318081 43.407 182 99 3 3 182 1 180 8.39e-48 166
Msa0258910 MtrunA17_Chr1g0201021 53.595 153 60 3 11 162 13 155 1.00e-46 168
Msa0258910 MtrunA17_Chr4g0042561 49.057 159 75 2 12 165 3 160 2.85e-46 160
Msa0258910 MtrunA17_Chr4g0017921 48.780 164 79 3 11 171 1 162 2.91e-46 162
Msa0258910 MtrunA17_Chr8g0359921 47.170 159 79 3 13 167 9 166 1.11e-45 160
Msa0258910 MtrunA17_Chr4g0060931 41.709 199 107 3 20 215 19 211 1.91e-45 160
Msa0258910 MtrunA17_Chr8g0364791 46.405 153 80 2 13 163 1 153 2.13e-45 162
Msa0258910 MtrunA17_Chr7g0252971 40.580 207 101 7 11 200 1 202 3.02e-45 159
Msa0258910 MtrunA17_Chr2g0318101 46.875 160 70 4 20 165 17 175 3.10e-45 159
Msa0258910 MtrunA17_Chr3g0091921 44.444 180 86 3 20 186 18 196 3.64e-45 158
Msa0258910 MtrunA17_Chr5g0417791 44.134 179 93 4 20 192 5 182 1.80e-44 155
Msa0258910 MtrunA17_Chr4g0018391 48.630 146 72 2 20 163 9 153 5.11e-44 156
Msa0258910 MtrunA17_Chr3g0139331 42.222 180 96 4 17 190 10 187 8.18e-44 155
Msa0258910 MtrunA17_Chr1g0197361 47.945 146 74 2 20 163 10 155 1.13e-43 160
Msa0258910 MtrunA17_Chr8g0372121 38.889 198 102 6 13 201 1 188 2.75e-43 153
Msa0258910 MtrunA17_Chr8g0384201 44.444 153 83 2 13 163 1 153 3.26e-43 157
Msa0258910 MtrunA17_Chr6g0484441 47.917 144 73 2 20 163 7 148 4.12e-43 153
Msa0258910 MtrunA17_Chr3g0130731 52.027 148 65 5 20 163 9 154 5.43e-43 152
Msa0258910 MtrunA17_Chr8g0384721 37.354 257 142 9 14 262 3 248 5.78e-43 151
Msa0258910 MtrunA17_Chr2g0309331 50.327 153 70 4 20 167 12 163 6.63e-43 153
Msa0258910 MtrunA17_Chr4g0056541 47.945 146 73 2 20 163 9 153 7.15e-43 153
Msa0258910 MtrunA17_Chr5g0405211 40.513 195 95 5 11 186 1 193 9.30e-43 153
Msa0258910 MtrunA17_Chr7g0217711 50.000 134 66 1 21 154 22 154 1.09e-42 147
Msa0258910 MtrunA17_Chr3g0124761 47.973 148 71 3 20 163 9 154 1.27e-42 150
Msa0258910 MtrunA17_Chr1g0147421 46.784 171 80 6 4 165 7 175 1.43e-42 152
Msa0258910 MtrunA17_Chr7g0263931 46.405 153 74 3 20 165 13 164 2.26e-42 151
Msa0258910 MtrunA17_Chr2g0316971 49.032 155 71 4 20 167 25 178 3.03e-42 152
Msa0258910 MtrunA17_Chr3g0092671 47.260 146 75 2 20 163 7 152 4.75e-42 155
Msa0258910 MtrunA17_Chr8g0345671 52.381 147 61 5 21 163 14 155 1.14e-41 151
Msa0258910 MtrunA17_Chr2g0326361 45.399 163 80 4 20 175 16 176 2.26e-41 148
Msa0258910 MtrunA17_Chr1g0200561 47.586 145 73 2 20 162 21 164 3.26e-41 149
Msa0258910 MtrunA17_Chr8g0346001 44.048 168 79 3 11 163 5 172 4.29e-41 150
Msa0258910 MtrunA17_Chr1g0197351 54.688 128 57 1 16 142 40 167 5.68e-41 151
Msa0258910 MtrunA17_Chr4g0047841 41.860 172 73 4 20 165 17 187 7.96e-41 147
Msa0258910 MtrunA17_Chr7g0217721 49.254 134 67 1 21 154 22 154 1.45e-40 147
Msa0258910 MtrunA17_Chr7g0253011 43.094 181 91 5 3 175 5 181 5.38e-40 146
Msa0258910 MtrunA17_Chr6g0453451 50.376 133 65 1 20 152 22 153 1.13e-39 144
Msa0258910 MtrunA17_Chr7g0214071 47.260 146 70 3 20 163 17 157 1.64e-39 141
Msa0258910 MtrunA17_Chr4g0076731 50.794 126 60 2 18 142 54 178 1.89e-39 146
Msa0258910 MtrunA17_Chr5g0398971 45.578 147 77 2 20 163 9 155 2.80e-39 144
Msa0258910 MtrunA17_Chr8g0345691 45.625 160 70 6 16 163 2 156 3.43e-39 145
Msa0258910 MtrunA17_Chr6g0453131 42.236 161 81 4 18 167 15 174 6.12e-39 144
Msa0258910 MtrunA17_Chr8g0345711 51.471 136 61 4 11 142 5 139 1.49e-38 136
Msa0258910 MtrunA17_Chr8g0361731 42.286 175 84 6 18 180 14 183 1.77e-38 142
Msa0258910 MtrunA17_Chr6g0461661 46.853 143 67 4 3 142 7 143 1.92e-38 142
Msa0258910 MtrunA17_Chr2g0311661 34.649 228 122 5 19 219 22 249 7.37e-38 138
Msa0258910 MtrunA17_Chr5g0417001 40.805 174 87 5 18 180 14 182 1.47e-37 140
Msa0258910 MtrunA17_Chr2g0312321 42.675 157 85 4 9 163 2 155 6.16e-37 136
Msa0258910 MtrunA17_Chr2g0311651 45.312 128 66 1 19 142 23 150 7.05e-37 136
Msa0258910 MtrunA17_Chr3g0144271 52.381 126 56 3 20 142 25 149 4.13e-36 137
Msa0258910 MtrunA17_Chr4g0038751 40.667 150 81 3 19 165 16 160 1.07e-34 130
Msa0258910 MtrunA17_Chr7g0261411 48.462 130 64 2 15 142 7 135 2.49e-34 129
Msa0258910 MtrunA17_Chr2g0321631 43.506 154 77 5 20 163 6 159 3.30e-34 127
Msa0258910 MtrunA17_Chr5g0442771 42.446 139 76 2 18 153 18 155 5.65e-34 128
Msa0258910 MtrunA17_Chr8g0385991 40.506 158 83 3 14 163 10 164 7.27e-34 125
Msa0258910 MtrunA17_Chr1g0183741 46.565 131 67 2 14 142 6 135 7.36e-34 127
Msa0258910 MtrunA17_Chr8g0345741 51.695 118 52 5 29 142 2 118 2.32e-33 122
Msa0258910 MtrunA17_Chr7g0266701 33.840 263 142 11 17 262 3 250 4.51e-33 124
Msa0258910 MtrunA17_Chr8g0345731 47.656 128 61 4 21 142 27 154 1.01e-32 121
Msa0258910 MtrunA17_Chr4g0026141 44.444 153 76 6 20 163 7 159 3.66e-32 122
Msa0258910 MtrunA17_Chr8g0345721 41.176 170 66 6 6 142 23 191 3.92e-32 120
Msa0258910 MtrunA17_Chr3g0131911 37.267 161 87 4 14 163 10 167 7.01e-30 115
Msa0258910 MtrunA17_Chr8g0345701 43.537 147 62 6 14 142 3 146 1.77e-28 110
Msa0258910 MtrunA17_Chr3g0113001 40.945 127 68 2 72 191 18 144 8.66e-27 108
Msa0258910 MtrunA17_Chr4g0050701 37.600 125 67 3 20 142 13 128 1.17e-22 94.7
Msa0258910 MtrunA17_Chr3g0113031 51.389 72 35 0 83 154 4 75 4.52e-21 92.0
Msa0258910 MtrunA17_Chr7g0243371 47.945 73 36 1 72 142 17 89 1.08e-17 78.6
Msa0258910 MtrunA17_Chr8g0384351 35.616 146 70 8 20 163 12 135 1.67e-16 77.0
Msa0258910 MtrunA17_Chr3g0130321 31.496 127 78 3 20 144 9 128 2.63e-14 71.6
Msa0258910 MtrunA17_Chr7g0251661 33.333 126 79 5 21 144 13 135 2.65e-14 70.1
Msa0258910 MtrunA17_Chr7g0251651 32.540 126 80 5 21 144 21 143 2.66e-13 68.2
Msa0258910 MtrunA17_Chr7g0274971 28.302 159 91 8 24 168 11 160 3.62e-11 62.4
Msa0258910 MtrunA17_Chr3g0113011 57.143 49 20 1 19 66 19 67 5.07e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0258910 AT2G27300.1 46.562 320 98 8 5 321 1 250 4.10e-86 265
Msa0258910 AT3G44290.1 48.311 296 96 9 14 309 10 248 1.72e-80 251
Msa0258910 AT5G22290.1 66.061 165 51 1 5 169 8 167 3.07e-79 248
Msa0258910 AT3G44290.2 68.153 157 44 2 14 170 10 160 3.43e-77 239
Msa0258910 AT4G35580.1 55.758 165 71 2 12 174 3 167 3.34e-57 196
Msa0258910 AT4G35580.3 55.758 165 71 2 12 174 3 167 3.40e-57 196
Msa0258910 AT4G35580.2 55.758 165 71 2 12 174 3 167 3.62e-57 196
Msa0258910 AT3G49530.2 53.750 160 71 3 13 169 8 167 6.44e-56 189
Msa0258910 AT3G49530.1 44.292 219 112 4 13 221 8 226 1.83e-55 190
Msa0258910 AT1G33060.1 54.938 162 69 3 4 163 12 171 2.12e-55 193
Msa0258910 AT1G33060.2 54.938 162 69 3 4 163 12 171 2.44e-55 193
Msa0258910 AT5G24590.2 50.838 179 80 4 7 182 2 175 4.84e-55 188
Msa0258910 AT5G17260.1 57.143 154 63 2 13 163 1 154 9.49e-55 188
Msa0258910 AT3G03200.1 55.844 154 65 2 13 163 1 154 1.01e-53 186
Msa0258910 AT1G65910.1 40.711 253 122 4 13 263 1 227 2.04e-53 187
Msa0258910 AT3G17730.1 54.140 157 69 3 13 166 1 157 2.32e-53 178
Msa0258910 AT5G46590.1 47.701 174 87 3 13 182 1 174 8.40e-52 175
Msa0258910 AT4G17980.1 50.000 162 75 4 13 168 1 162 1.45e-49 169
Msa0258910 AT4G17980.2 50.000 162 75 4 13 168 1 162 2.95e-49 169
Msa0258910 AT1G54330.1 51.572 159 73 4 13 169 1 157 9.63e-49 167
Msa0258910 AT4G10350.1 47.778 180 84 4 20 194 11 185 4.26e-48 167
Msa0258910 AT4G27410.2 48.077 156 79 2 13 167 9 163 9.64e-48 165
Msa0258910 AT5G46590.2 49.383 162 73 4 13 170 1 157 1.17e-47 164
Msa0258910 AT3G10480.2 49.351 154 76 2 12 163 21 174 3.21e-47 167
Msa0258910 AT3G10490.1 49.020 153 75 2 14 163 23 175 4.83e-47 161
Msa0258910 AT3G10480.1 49.032 155 76 2 12 163 21 175 5.17e-47 167
Msa0258910 AT1G33280.1 46.893 177 88 4 11 183 1 175 8.63e-47 162
Msa0258910 AT5G09330.5 50.327 153 74 2 13 163 1 153 9.99e-47 167
Msa0258910 AT5G09330.2 50.327 153 74 2 13 163 1 153 9.99e-47 167
Msa0258910 AT5G09330.4 50.327 153 74 2 13 163 1 153 9.99e-47 167
Msa0258910 AT5G09330.3 50.327 153 74 2 13 163 1 153 9.99e-47 167
Msa0258910 AT5G09330.1 50.327 153 74 2 13 163 1 153 9.99e-47 167
Msa0258910 AT3G10500.1 50.658 152 73 2 14 163 5 156 1.66e-46 167
Msa0258910 AT3G15500.1 48.052 154 78 2 13 165 9 161 1.75e-46 162
Msa0258910 AT1G69490.1 48.408 157 75 2 14 165 5 160 2.18e-46 160
Msa0258910 AT5G04410.1 50.658 152 73 2 14 163 5 156 9.28e-46 166
Msa0258910 AT1G71930.2 42.051 195 91 4 12 187 3 194 1.90e-45 159
Msa0258910 AT1G71930.1 42.051 195 91 4 12 187 3 194 1.90e-45 159
Msa0258910 AT2G24430.2 48.701 154 76 2 17 168 15 167 1.96e-45 159
Msa0258910 AT2G24430.1 48.701 154 76 2 17 168 15 167 1.96e-45 159
Msa0258910 AT3G10490.2 49.020 153 75 2 14 163 23 175 2.09e-45 162
Msa0258910 AT5G64060.1 42.286 175 94 3 13 185 1 170 2.54e-45 160
Msa0258910 AT3G18400.1 48.611 144 73 1 20 163 7 149 6.04e-45 158
Msa0258910 AT1G32510.1 44.974 189 87 5 13 184 1 189 6.53e-45 157
Msa0258910 AT4G27410.3 44.767 172 78 3 13 167 9 180 7.61e-45 157
Msa0258910 AT1G52890.1 48.000 150 76 2 17 165 13 161 1.11e-44 157
Msa0258910 AT5G07680.2 49.007 151 73 2 20 167 5 154 6.63e-44 155
Msa0258910 AT5G07680.1 49.007 151 73 2 20 167 19 168 7.10e-44 155
Msa0258910 AT3G15170.1 49.673 153 71 3 16 163 18 169 1.30e-43 154
Msa0258910 AT5G39610.1 41.579 190 101 4 20 206 22 204 1.47e-43 153
Msa0258910 AT5G61430.1 46.250 160 77 3 7 163 10 163 2.11e-43 154
Msa0258910 AT3G29035.1 52.632 133 62 1 20 152 26 157 2.85e-43 154
Msa0258910 AT3G04070.2 47.273 165 73 5 16 167 8 171 8.15e-43 153
Msa0258910 AT1G34190.1 52.344 128 60 1 20 146 18 145 2.52e-42 156
Msa0258910 AT1G61110.1 51.562 128 60 2 20 146 18 144 5.02e-42 150
Msa0258910 AT1G79580.3 46.369 179 79 7 1 170 1 171 5.18e-42 152
Msa0258910 AT1G79580.5 46.369 179 79 7 1 170 1 171 5.18e-42 152
Msa0258910 AT1G79580.4 46.369 179 79 7 1 170 1 171 5.18e-42 152
Msa0258910 AT1G79580.2 46.369 179 79 7 1 170 1 171 5.18e-42 152
Msa0258910 AT1G79580.1 46.369 179 79 7 1 170 1 171 5.18e-42 152
Msa0258910 AT5G08790.1 48.993 149 68 4 21 163 10 156 5.22e-42 149
Msa0258910 AT1G01720.1 46.980 149 72 3 20 163 9 155 7.27e-42 149
Msa0258910 AT3G04070.1 52.206 136 59 3 16 146 8 142 7.29e-42 151
Msa0258910 AT2G02450.1 53.175 126 57 2 18 142 51 175 7.63e-42 151
Msa0258910 AT1G34180.3 52.344 128 60 1 20 146 18 145 9.01e-42 153
Msa0258910 AT2G02450.2 53.175 126 57 2 18 142 51 175 1.08e-41 152
Msa0258910 AT5G66300.1 46.452 155 79 2 17 167 11 165 1.12e-41 149
Msa0258910 AT4G36160.2 48.322 149 72 3 17 162 13 159 1.78e-41 150
Msa0258910 AT4G36160.1 48.322 149 72 3 17 162 9 155 1.84e-41 150
Msa0258910 AT4G36160.3 48.322 149 72 3 17 162 9 155 1.84e-41 150
Msa0258910 AT2G18060.3 45.752 153 78 3 13 162 4 154 2.98e-41 149
Msa0258910 AT2G18060.1 45.752 153 78 3 13 162 4 154 2.98e-41 149
Msa0258910 AT1G34180.1 52.344 128 60 1 20 146 18 145 3.01e-41 153
Msa0258910 AT1G32770.1 40.722 194 98 5 4 181 1 193 4.58e-41 149
Msa0258910 AT3G10480.3 40.957 188 75 3 12 163 21 208 4.93e-41 152
Msa0258910 AT3G15510.1 45.122 164 74 5 22 170 21 183 7.11e-41 149
Msa0258910 AT2G46770.1 41.117 197 97 5 4 181 1 197 1.02e-40 148
Msa0258910 AT1G12260.2 44.521 146 78 2 20 163 9 153 5.77e-40 145
Msa0258910 AT5G53950.1 57.143 126 49 4 20 142 19 142 7.08e-40 146
Msa0258910 AT1G76420.1 44.253 174 94 2 1 172 5 177 7.46e-40 145
Msa0258910 AT1G26870.1 43.293 164 76 4 18 167 16 176 8.41e-40 147
Msa0258910 AT5G18270.2 47.297 148 73 3 20 163 23 169 9.89e-40 145
Msa0258910 AT2G33480.1 47.619 147 68 3 20 163 17 157 1.23e-39 142
Msa0258910 AT1G77450.1 46.622 148 73 3 20 163 12 157 1.28e-39 142
Msa0258910 AT1G12260.1 44.521 146 78 2 20 163 9 153 1.38e-39 145
Msa0258910 AT1G62700.1 45.333 150 79 2 16 163 5 153 1.56e-39 145
Msa0258910 AT1G62700.2 45.333 150 79 2 16 163 5 153 1.56e-39 145
Msa0258910 AT5G63790.1 44.444 162 77 5 8 163 45 199 2.23e-39 143
Msa0258910 AT3G61910.1 35.266 207 111 3 1 191 1 200 2.29e-39 144
Msa0258910 AT5G63790.2 44.444 162 77 5 8 163 55 209 2.64e-39 143
Msa0258910 AT2G17040.1 46.000 150 73 3 19 165 7 151 4.06e-39 141
Msa0258910 AT5G18270.1 46.622 148 74 3 20 163 23 169 4.94e-39 143
Msa0258910 AT3G04060.1 47.297 148 73 3 20 163 22 168 6.83e-39 142
Msa0258910 AT2G33480.2 47.222 144 71 2 20 163 17 155 8.86e-39 140
Msa0258910 AT1G52880.1 47.134 157 69 4 22 165 21 176 1.04e-38 142
Msa0258910 AT1G34180.4 47.857 140 60 2 20 146 18 157 1.35e-38 144
Msa0258910 AT1G34180.2 47.857 140 60 2 20 146 18 157 3.53e-38 145
Msa0258910 AT5G62380.2 44.138 145 78 2 20 162 9 152 7.34e-38 140
Msa0258910 AT5G62380.1 44.138 145 78 2 20 162 9 152 7.34e-38 140
Msa0258910 AT5G04395.1 44.966 149 67 2 12 145 22 170 1.08e-37 135
Msa0258910 AT1G32870.3 43.023 172 89 4 3 167 28 197 1.14e-37 143
Msa0258910 AT2G43000.1 47.581 124 64 1 19 142 19 141 1.60e-37 137
Msa0258910 AT1G32870.2 51.111 135 63 2 11 144 3 135 1.62e-37 142
Msa0258910 AT1G32870.1 51.111 135 63 2 11 144 3 135 1.62e-37 142
Msa0258910 AT5G13180.1 45.890 146 73 2 20 163 16 157 1.62e-37 136
Msa0258910 AT3G12977.1 38.922 167 95 3 1 163 1 164 2.27e-37 137
Msa0258910 AT1G56010.2 39.881 168 94 5 7 168 8 174 5.33e-37 137
Msa0258910 AT5G39820.1 47.244 127 64 2 18 142 20 145 3.34e-36 135
Msa0258910 AT3G12910.1 47.143 140 63 5 19 153 22 155 3.06e-33 126
Msa0258910 AT1G02230.1 41.379 174 88 7 21 188 6 171 3.86e-33 127
Msa0258910 AT5G22290.2 73.611 72 14 1 98 169 2 68 1.17e-31 120
Msa0258910 AT4G01550.1 45.385 130 66 3 21 145 7 136 2.44e-29 119
Msa0258910 AT4G01540.4 40.805 174 91 7 21 188 7 174 4.85e-29 117
Msa0258910 AT4G01520.1 39.655 174 93 7 21 188 7 174 6.32e-29 115
Msa0258910 AT4G01540.2 33.955 268 142 12 21 270 7 257 7.05e-29 117
Msa0258910 AT4G01540.3 40.805 174 91 7 21 188 7 174 1.28e-28 116
Msa0258910 AT4G01540.1 40.805 174 91 7 21 188 7 174 1.31e-28 117
Msa0258910 AT4G10350.2 45.600 125 60 3 73 194 19 138 1.69e-28 113
Msa0258910 AT4G28530.1 41.096 146 67 3 15 142 7 151 1.04e-27 112
Msa0258910 AT5G22380.1 38.462 156 87 4 21 167 8 163 5.81e-27 107
Msa0258910 AT3G44350.2 40.000 150 83 5 21 163 8 157 4.30e-26 105
Msa0258910 AT3G04420.2 41.600 125 70 2 21 142 6 130 4.71e-26 107
Msa0258910 AT3G04420.1 41.600 125 70 2 21 142 6 130 6.83e-26 107
Msa0258910 AT5G61430.2 46.316 95 48 1 72 163 6 100 8.27e-26 105
Msa0258910 AT3G44350.1 44.094 127 66 4 21 142 8 134 1.46e-25 102
Msa0258910 AT1G02250.1 38.506 174 92 8 21 188 6 170 5.19e-25 105
Msa0258910 AT3G12977.2 44.681 94 46 2 74 163 20 111 7.34e-24 99.4
Msa0258910 AT1G02220.1 38.400 125 71 3 21 142 6 127 1.39e-22 99.0
Msa0258910 AT1G56010.1 43.000 100 52 3 74 168 8 107 1.40e-21 93.6
Msa0258910 AT1G01010.1 32.636 239 130 12 21 245 6 227 1.78e-21 96.3
Msa0258910 AT2G33480.3 46.316 95 46 2 72 163 8 100 1.93e-21 92.0
Msa0258910 AT5G64530.2 37.209 129 66 5 20 146 5 120 3.09e-20 87.4
Msa0258910 AT5G64530.1 35.659 129 68 4 20 146 5 120 1.58e-19 86.3
Msa0258910 AT3G10490.4 50.685 73 34 1 93 163 3 75 2.23e-17 83.2
Msa0258910 AT3G10490.3 50.685 73 34 1 93 163 3 75 2.23e-17 83.2
Msa0258910 AT4G28530.2 40.179 112 48 3 15 109 7 116 2.44e-17 82.8
Msa0258910 AT3G55210.1 29.697 165 100 3 12 163 5 166 2.76e-17 82.0
Msa0258910 AT3G04430.1 35.878 131 71 4 24 142 6 135 7.99e-17 79.0
Msa0258910 AT3G56530.1 30.137 146 99 2 20 163 54 198 2.95e-16 79.7
Msa0258910 AT2G43000.2 48.387 62 32 0 81 142 2 63 5.34e-14 70.9
Msa0258910 AT5G50820.1 32.283 127 73 4 20 142 19 136 2.08e-12 66.2
Msa0258910 AT2G18060.2 44.776 67 34 2 97 162 2 66 4.12e-12 66.6
Msa0258910 AT5G14000.2 30.709 127 83 2 21 145 18 141 5.01e-12 63.9
Msa0258910 AT5G14000.1 29.078 141 94 3 8 145 4 141 1.80e-11 63.5

Find 111 sgRNAs with CRISPR-Local

Find 208 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTCACGGCTATATTATTT+TGG 0.224338 2_2:+55594718 Msa0258910:CDS
AAATATTGTAGGAAAATTTC+AGG 0.231634 2_2:+55594770 Msa0258910:CDS
AGAATCTAAATTCACTAAAC+TGG 0.256195 2_2:+55594863 Msa0258910:three_prime_UTR
TGAGAATGTGCAAGGTTATT+TGG 0.272129 2_2:-55594534 None:intergenic
TCACTTTCATGTGAATTTAC+TGG 0.288594 2_2:-55594028 None:intergenic
TCACTTTCATGTGAATTTAC+TGG 0.288594 2_2:-55594070 None:intergenic
ATCTAGCTAGGGTTTAATTA+AGG 0.289248 2_2:-55592417 None:intergenic
CACAACGGAGAATACGATTA+AGG 0.296370 2_2:+55594574 Msa0258910:CDS
TCTACTTGACGTTTATGATA+TGG 0.301749 2_2:+55594922 Msa0258910:three_prime_UTR
CATTCTGTCCTTTCACCCTT+AGG 0.318522 2_2:-55593739 None:intergenic
CATCAAACGATTGGTCATTC+TGG 0.319286 2_2:-55594673 None:intergenic
AAAAGAGCGCAACGTGAAAT+CGG 0.320485 2_2:+55593663 Msa0258910:CDS
ATGTATGTTTCAGGATTCTT+TGG 0.329361 2_2:+55593886 Msa0258910:intron
GATTGTTCTTTGCTTGGTTA+AGG 0.331262 2_2:-55592350 None:intergenic
TTCACTAAACTGGGTTTAAG+AGG 0.351295 2_2:+55594873 Msa0258910:three_prime_UTR
ATAACTGCTGCTTCCCCGTT+TGG 0.351801 2_2:-55594170 None:intergenic
ATTGTTCTTTGCTTGGTTAA+GGG 0.353309 2_2:-55592349 None:intergenic
AAAGATGGTACCAACCAAAA+AGG 0.372767 2_2:+55595078 Msa0258910:three_prime_UTR
CAGTTATGGTTCAGCTTCAA+TGG 0.373075 2_2:+55594186 Msa0258910:CDS
ATCACAATCACCTTTGCAAC+AGG 0.382519 2_2:+55592370 Msa0258910:five_prime_UTR
GAGCTACTGACTGTGGCTAT+TGG 0.383824 2_2:+55593629 Msa0258910:CDS
GATGGAGATAGTTGTTTCAA+AGG 0.388699 2_2:+55592503 Msa0258910:exon
TCACTTAGGTCGTGCACCTA+AGG 0.393121 2_2:+55593723 Msa0258910:CDS
ATCTGATTGAATGAATGATT+TGG 0.404293 2_2:-55593545 None:intergenic
GATTGTGATTGTTCTTTGCT+TGG 0.406414 2_2:-55592356 None:intergenic
CACTTTCATGTGAATTTACT+GGG 0.413731 2_2:-55594027 None:intergenic
CACTTTCATGTGAATTTACT+GGG 0.413731 2_2:-55594069 None:intergenic
TTCTCCGTTGTGCAGTGCCT+TGG 0.417997 2_2:-55594563 None:intergenic
AGCAATGGAATTTAGAAACT+TGG 0.428246 2_2:-55594817 None:intergenic
AAAGAGAGGTGGGAAGAAGA+TGG 0.435629 2_2:+55592485 Msa0258910:exon
AAACAAGTTAGAAATATTGT+AGG 0.438564 2_2:+55594759 Msa0258910:CDS
GCTTTGTAAATATGAACCTT+GGG 0.442017 2_2:+55592665 Msa0258910:CDS
AAATCGGGTTCTAATGTCAT+AGG 0.442652 2_2:+55593679 Msa0258910:CDS
GGGTGGCAAGGTAAGGCAAG+TGG 0.449987 2_2:-55592329 None:intergenic
AAAGAGCGCAACGTGAAATC+GGG 0.454109 2_2:+55593664 Msa0258910:CDS
AGCTTTGTAAATATGAACCT+TGG 0.454874 2_2:+55592664 Msa0258910:CDS
GCTGCTTCGTCTATGTTCCC+TGG 0.458229 2_2:+55592543 Msa0258910:CDS
CGAACTTTGGTGTTTCACTT+AGG 0.463686 2_2:+55593709 Msa0258910:CDS
ATTGTTATGCTGAGATACTA+AGG 0.473886 2_2:+55594457 Msa0258910:CDS
GCAGGTCTCCTAACCTCAAA+AGG 0.475688 2_2:+55595112 Msa0258910:three_prime_UTR
GGTTGATGGTAGTTCCAAAC+GGG 0.476342 2_2:+55594156 Msa0258910:CDS
AGCAAATATCATCAAACGAT+TGG 0.476940 2_2:-55594682 None:intergenic
TACTGGAGGTTCTAGAAAGA+TGG 0.477224 2_2:+55595063 Msa0258910:three_prime_UTR
GTGGCAAGGTAAGGCAAGTG+GGG 0.480931 2_2:-55592327 None:intergenic
AAACGGGGAAGCAGCAGTTA+TGG 0.485441 2_2:+55594172 Msa0258910:CDS
ATCAAAACTGATTCTGTGAG+AGG 0.493317 2_2:+55594995 Msa0258910:three_prime_UTR
TGACGTTTATGATATGGCTC+TGG 0.497614 2_2:+55594928 Msa0258910:three_prime_UTR
TGGTTAAGGGTGGCAAGGTA+AGG 0.499345 2_2:-55592336 None:intergenic
TCTGGCAAAGAAGCTACTCT+TGG 0.501988 2_2:-55594655 None:intergenic
ACAACGGAGAATACGATTAA+GGG 0.503506 2_2:+55594575 Msa0258910:CDS
GGTGGCAAGGTAAGGCAAGT+GGG 0.504045 2_2:-55592328 None:intergenic
ATATAATAAAGAATCTAGCT+AGG 0.506079 2_2:-55592429 None:intergenic
GAACAAGAAAAGGAGGTTGA+TGG 0.507935 2_2:+55594142 Msa0258910:CDS
CGGTACTGATCATAGAGAAA+GGG 0.508013 2_2:+55594111 Msa0258910:CDS
AGACTCTTCGGGCCAGCTAA+AGG 0.513022 2_2:+55594267 Msa0258910:CDS
TGGCAAGGTAAGGCAAGTGG+GGG 0.514151 2_2:-55592326 None:intergenic
GGGTGTCTGCGAACAAGAAA+AGG 0.514695 2_2:+55594132 Msa0258910:CDS
CATAGGTACAAAGCGAACTT+TGG 0.517811 2_2:+55593696 Msa0258910:CDS
CACTTAGGTCGTGCACCTAA+GGG 0.525784 2_2:+55593724 Msa0258910:CDS
AATGAGTAAAGACAAAGAAG+TGG 0.532475 2_2:-55592283 None:intergenic
TCACTTTCATGTGAATGTAC+AGG 0.533418 2_2:-55593986 None:intergenic
GCGGTACTGATCATAGAGAA+AGG 0.535249 2_2:+55594110 Msa0258910:CDS
CTGTGTCAGTGACAGGTCTC+CGG 0.535633 2_2:+55593777 Msa0258910:CDS
CGTTGTGCAGTGCCTTGGCA+TGG 0.537314 2_2:-55594558 None:intergenic
TGGTTGTTTGTCGTCTCAAG+AGG 0.540094 2_2:+55593906 Msa0258910:CDS
GTTCTTTGCTTGGTTAAGGG+TGG 0.542208 2_2:-55592346 None:intergenic
CGTGGAAGAAAATATCCAAA+TGG 0.543612 2_2:+55593592 Msa0258910:CDS
AGGTTGATGGTAGTTCCAAA+CGG 0.545938 2_2:+55594155 Msa0258910:CDS
GAATCTAAATTCACTAAACT+GGG 0.548189 2_2:+55594864 Msa0258910:three_prime_UTR
ACGAGTACTGTGTCAGTGAC+AGG 0.551156 2_2:+55593770 Msa0258910:CDS
TTGCTTGGTTAAGGGTGGCA+AGG 0.552854 2_2:-55592341 None:intergenic
TGTCAGTGACAGGTCTCCGG+TGG 0.553996 2_2:+55593780 Msa0258910:CDS
GAAATCAACTCTTCATCAGT+AGG 0.554061 2_2:-55592579 None:intergenic
TGTGGCTATTGGAAAGCCAC+TGG 0.560417 2_2:+55593640 Msa0258910:CDS
CAAAGAAGCTACTCTTGGAC+TGG 0.563143 2_2:-55594650 None:intergenic
TATAATAAAGAATCTAGCTA+GGG 0.563714 2_2:-55592428 None:intergenic
TATGAACCTTGGGATTTACC+AGG 0.564230 2_2:+55592675 Msa0258910:CDS
TGTTATGTAGATGGATGAAG+AGG 0.570365 2_2:+55594434 Msa0258910:intron
TCTTTGACTTACATTTCAGA+AGG 0.572409 2_2:-55595026 None:intergenic
TCAAAACTGATTCTGTGAGA+GGG 0.579783 2_2:+55594996 Msa0258910:three_prime_UTR
AGTGATTGTGCTATCTCAGA+AGG 0.585022 2_2:+55594088 Msa0258910:CDS
GTCGTGCACCTAAGGGTGAA+AGG 0.588146 2_2:+55593731 Msa0258910:CDS
CTAAGGGTGAAAGGACAGAA+TGG 0.589250 2_2:+55593740 Msa0258910:CDS
AAGTGTTCAAGTTATTTCTG+AGG 0.592202 2_2:+55592638 Msa0258910:CDS
ATATACAAAACCTGTTGCAA+AGG 0.595051 2_2:-55592380 None:intergenic
GATGAATCATCAATGTCTCA+AGG 0.597395 2_2:+55594498 Msa0258910:CDS
TTAGGAGACCTGCAACTGAA+AGG 0.601077 2_2:-55595102 None:intergenic
ACATTCAGATTATTACCCAC+CGG 0.609190 2_2:-55593796 None:intergenic
TGGTTCTTCTTCTCTCCCCG+TGG 0.613681 2_2:+55593574 Msa0258910:CDS
TCACATGAAAGTGATTGTGC+TGG 0.615457 2_2:+55594037 Msa0258910:CDS
GCTGCGCGGTACAACAGCAA+TGG 0.617053 2_2:-55594832 None:intergenic
TAGGACAGAATCTAAAACCA+GGG 0.617924 2_2:-55592560 None:intergenic
ATATCATAAACGTCAAGTAG+AGG 0.618734 2_2:-55594920 None:intergenic
ACCTTACCTGGTAAATCCCA+AGG 0.619123 2_2:-55592681 None:intergenic
GCACATTCTCATCCATGCCA+AGG 0.629279 2_2:+55594546 Msa0258910:CDS
GCTCCTGGTTGAGAATGTGT+TGG 0.632511 2_2:-55594606 None:intergenic
GTAGGACAGAATCTAAAACC+AGG 0.635124 2_2:-55592561 None:intergenic
TCATTCAATCAGATAACGAG+TGG 0.635826 2_2:+55593554 Msa0258910:CDS
ATTGCTGTTGTACCGCGCAG+CGG 0.645129 2_2:+55594834 Msa0258910:three_prime_UTR
GTCAGTGACAGGTCTCCGGT+GGG 0.645594 2_2:+55593781 Msa0258910:CDS
AATCAGCGACCAGCTAATGA+CGG 0.647955 2_2:+55594235 Msa0258910:CDS
AGTAAAAGAGCTACTGACTG+TGG 0.648863 2_2:+55593622 Msa0258910:CDS
GGTACTGATCATAGAGAAAG+GGG 0.649597 2_2:+55594112 Msa0258910:CDS
TCACATGAAAGTGATTGTGC+TGG 0.661055 2_2:+55593995 Msa0258910:CDS
AAACCAACACATTCTCAACC+AGG 0.668307 2_2:+55594603 Msa0258910:CDS
GATTCTCTATGTCCGCTGCG+CGG 0.682997 2_2:-55594846 None:intergenic
TGTCTGCGAACAAGAAAAGG+AGG 0.695006 2_2:+55594135 Msa0258910:CDS
GATTGTGCTATCTCAGAAGG+CGG 0.697615 2_2:+55594091 Msa0258910:CDS
GGCATGGATGAGAATGTGCA+AGG 0.698005 2_2:-55594542 None:intergenic
CATGCCAAGGCACTGCACAA+CGG 0.707247 2_2:+55594559 Msa0258910:CDS
GTTGATGGTAGTTCCAAACG+GGG 0.760252 2_2:+55594157 Msa0258910:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGTTTTTAGTTTTAAATATT+TGG + chr2_2:55592728-55592747 Msa0258910:intron 10.0%
!! TTATTACCTTAGAAAAAAAT+TGG + chr2_2:55592602-55592621 Msa0258910:CDS 15.0%
!!! ATACTTAGAATAGTTTTTTT+TGG + chr2_2:55592807-55592826 Msa0258910:intron 15.0%
!! TATAATAAAGAATCTAGCTA+GGG - chr2_2:55592431-55592450 None:intergenic 20.0%
!! ATATAATAAAGAATCTAGCT+AGG - chr2_2:55592432-55592451 None:intergenic 20.0%
!!! ATAGTTTTTTTTGGCATATT+TGG + chr2_2:55592816-55592835 Msa0258910:intron 20.0%
!!! ATTTTTCATATGTTGAAACT+TGG - chr2_2:55593044-55593063 None:intergenic 20.0%
!! AACATTTCTCAAATTATTAC+CGG - chr2_2:55593412-55593431 None:intergenic 20.0%
!!! CTTGTTTTTTAACATTCATA+GGG - chr2_2:55593833-55593852 None:intergenic 20.0%
!!! TCTTGTTTTTTAACATTCAT+AGG - chr2_2:55593834-55593853 None:intergenic 20.0%
!! CATAACAATATCATCATAAA+AGG - chr2_2:55594421-55594440 None:intergenic 20.0%
!!! ATATTATTTTGGTCTTCATT+TGG + chr2_2:55594729-55594748 Msa0258910:CDS 20.0%
!! AAACAAGTTAGAAATATTGT+AGG + chr2_2:55594759-55594778 Msa0258910:CDS 20.0%
!! AAATATTGTAGGAAAATTTC+AGG + chr2_2:55594770-55594789 Msa0258910:CDS 20.0%
!!! TATTTTTGGATGATATTTTG+TGG + chr2_2:55594956-55594975 Msa0258910:three_prime_UTR 20.0%
! TACCTTAGAAAAAAATTGGA+TGG + chr2_2:55592606-55592625 Msa0258910:CDS 25.0%
!!! TTTTTTTTGGCATATTTGGA+AGG + chr2_2:55592820-55592839 Msa0258910:intron 25.0%
!!! CATCATTTTAATCATGCTTT+TGG + chr2_2:55592925-55592944 Msa0258910:intron 25.0%
!!! TGAGCATTGAAAATGTTATT+TGG + chr2_2:55593076-55593095 Msa0258910:intron 25.0%
! CATTGTATGAATTTCATGTA+GGG + chr2_2:55593240-55593259 Msa0258910:intron 25.0%
!! ATAATAATGAGAGGCATAAA+TGG - chr2_2:55593267-55593286 None:intergenic 25.0%
!! AAATTTTCTGCTGAGTTAAT+TGG - chr2_2:55593491-55593510 None:intergenic 25.0%
! ATCTGATTGAATGAATGATT+TGG - chr2_2:55593548-55593567 None:intergenic 25.0%
!!! TTGTTTGTTATGTATGTTTC+AGG + chr2_2:55593877-55593896 Msa0258910:intron 25.0%
!! ATCAATTTTATACCTTTAGC+TGG - chr2_2:55594282-55594301 None:intergenic 25.0%
! TGATGATATTGTTATGTAGA+TGG + chr2_2:55594425-55594444 Msa0258910:intron 25.0%
! AGAATCTAAATTCACTAAAC+TGG + chr2_2:55594863-55594882 Msa0258910:three_prime_UTR 25.0%
! GAATCTAAATTCACTAAACT+GGG + chr2_2:55594864-55594883 Msa0258910:three_prime_UTR 25.0%
AATGAGTAAAGACAAAGAAG+TGG - chr2_2:55592286-55592305 None:intergenic 30.0%
ATTGTTCTTTGCTTGGTTAA+GGG - chr2_2:55592352-55592371 None:intergenic 30.0%
ATATACAAAACCTGTTGCAA+AGG - chr2_2:55592383-55592402 None:intergenic 30.0%
ATCTAGCTAGGGTTTAATTA+AGG - chr2_2:55592420-55592439 None:intergenic 30.0%
!!! GACCATCCAATTTTTTTCTA+AGG - chr2_2:55592611-55592630 None:intergenic 30.0%
!! AAGTGTTCAAGTTATTTCTG+AGG + chr2_2:55592638-55592657 Msa0258910:CDS 30.0%
! AGCTTTGTAAATATGAACCT+TGG + chr2_2:55592664-55592683 Msa0258910:CDS 30.0%
GCTTTGTAAATATGAACCTT+GGG + chr2_2:55592665-55592684 Msa0258910:CDS 30.0%
! CAACATACATATTTTCTGTG+TGG - chr2_2:55593104-55593123 None:intergenic 30.0%
CACACAGAAAATATGTATGT+TGG + chr2_2:55593102-55593121 Msa0258910:intron 30.0%
ACAGAAAATATGTATGTTGG+TGG + chr2_2:55593105-55593124 Msa0258910:intron 30.0%
CAGAAAATATGTATGTTGGT+GGG + chr2_2:55593106-55593125 Msa0258910:intron 30.0%
CAATATAAGTGTACAAACAG+AGG + chr2_2:55593187-55593206 Msa0258910:intron 30.0%
GCATTGTATGAATTTCATGT+AGG + chr2_2:55593239-55593258 Msa0258910:intron 30.0%
! ATATGTGTAGGTTTTTCATG+GGG - chr2_2:55593297-55593316 None:intergenic 30.0%
! CATATGTGTAGGTTTTTCAT+GGG - chr2_2:55593298-55593317 None:intergenic 30.0%
! ACATATGTGTAGGTTTTTCA+TGG - chr2_2:55593299-55593318 None:intergenic 30.0%
! ATTTGGATATTTTCTTCCAC+GGG - chr2_2:55593593-55593612 None:intergenic 30.0%
! CATTTGGATATTTTCTTCCA+CGG - chr2_2:55593594-55593613 None:intergenic 30.0%
! CTTTTACTTTGTGAACCATT+TGG - chr2_2:55593610-55593629 None:intergenic 30.0%
! TTTTTAACATTCATAGGGAG+AGG - chr2_2:55593828-55593847 None:intergenic 30.0%
ATGTATGTTTCAGGATTCTT+TGG + chr2_2:55593886-55593905 Msa0258910:intron 30.0%
CACTTTCATGTGAATTTACT+GGG - chr2_2:55594030-55594049 None:intergenic 30.0%
TCACTTTCATGTGAATTTAC+TGG - chr2_2:55594031-55594050 None:intergenic 30.0%
CACTTTCATGTGAATTTACT+GGG - chr2_2:55594030-55594049 None:intergenic 30.0%
TCACTTTCATGTGAATTTAC+TGG - chr2_2:55594031-55594050 None:intergenic 30.0%
ATTGTTATGCTGAGATACTA+AGG + chr2_2:55594457-55594476 Msa0258910:CDS 30.0%
AGCAAATATCATCAAACGAT+TGG - chr2_2:55594685-55594704 None:intergenic 30.0%
! TTTCTTCATTTTCACTCTCA+CGG + chr2_2:55594704-55594723 Msa0258910:CDS 30.0%
!!! TTATTTTGGTCTTCATTTGG+TGG + chr2_2:55594732-55594751 Msa0258910:CDS 30.0%
AGCAATGGAATTTAGAAACT+TGG - chr2_2:55594820-55594839 None:intergenic 30.0%
ATATCATAAACGTCAAGTAG+AGG - chr2_2:55594923-55594942 None:intergenic 30.0%
TCTACTTGACGTTTATGATA+TGG + chr2_2:55594922-55594941 Msa0258910:three_prime_UTR 30.0%
! TCTTTGACTTACATTTCAGA+AGG - chr2_2:55595029-55595048 None:intergenic 30.0%
! AGATGACTGATATTTTGTAC+TGG + chr2_2:55595046-55595065 Msa0258910:three_prime_UTR 30.0%
GATTGTTCTTTGCTTGGTTA+AGG - chr2_2:55592353-55592372 None:intergenic 35.0%
GATTGTGATTGTTCTTTGCT+TGG - chr2_2:55592359-55592378 None:intergenic 35.0%
GTGTTGAGAAGAAAAAAGAG+AGG + chr2_2:55592471-55592490 Msa0258910:five_prime_UTR 35.0%
TTGAGAAGAAAAAAGAGAGG+TGG + chr2_2:55592474-55592493 Msa0258910:five_prime_UTR 35.0%
TGAGAAGAAAAAAGAGAGGT+GGG + chr2_2:55592475-55592494 Msa0258910:five_prime_UTR 35.0%
! GATGGAGATAGTTGTTTCAA+AGG + chr2_2:55592503-55592522 Msa0258910:exon 35.0%
! TAGGACAGAATCTAAAACCA+GGG - chr2_2:55592563-55592582 None:intergenic 35.0%
GAAATCAACTCTTCATCAGT+AGG - chr2_2:55592582-55592601 None:intergenic 35.0%
GTGTGGGATTGTGAATTATT+GGG + chr2_2:55592842-55592861 Msa0258910:intron 35.0%
! ATTAGCTTAGCTGGAATTGT+TGG + chr2_2:55592868-55592887 Msa0258910:intron 35.0%
! CATTTTCAATGCTCAAAACG+TGG - chr2_2:55593071-55593090 None:intergenic 35.0%
! TATGTGTAGGTTTTTCATGG+GGG - chr2_2:55593296-55593315 None:intergenic 35.0%
TAGTGATAAGGAAACTACTC+AGG - chr2_2:55593323-55593342 None:intergenic 35.0%
! GATTGAATGAATGATTTGGC+TGG - chr2_2:55593544-55593563 None:intergenic 35.0%
TCATTCAATCAGATAACGAG+TGG + chr2_2:55593554-55593573 Msa0258910:CDS 35.0%
! TTTGGATATTTTCTTCCACG+GGG - chr2_2:55593592-55593611 None:intergenic 35.0%
CGTGGAAGAAAATATCCAAA+TGG + chr2_2:55593592-55593611 Msa0258910:CDS 35.0%
! AAATCGGGTTCTAATGTCAT+AGG + chr2_2:55593679-55593698 Msa0258910:CDS 35.0%
ACATTCAGATTATTACCCAC+CGG - chr2_2:55593799-55593818 None:intergenic 35.0%
TCACTTTCATGTGAATGTAC+AGG - chr2_2:55593989-55594008 None:intergenic 35.0%
CGTGTAATGTACTCATTCTA+CGG - chr2_2:55594335-55594354 None:intergenic 35.0%
! CTAGATTCAGCTTTTTGCAT+CGG + chr2_2:55594367-55594386 Msa0258910:intron 35.0%
TGTTATGTAGATGGATGAAG+AGG + chr2_2:55594434-55594453 Msa0258910:intron 35.0%
GATGAATCATCAATGTCTCA+AGG + chr2_2:55594498-55594517 Msa0258910:CDS 35.0%
TGAGAATGTGCAAGGTTATT+TGG - chr2_2:55594537-55594556 None:intergenic 35.0%
ACAACGGAGAATACGATTAA+GGG + chr2_2:55594575-55594594 Msa0258910:CDS 35.0%
! CTCTCACGGCTATATTATTT+TGG + chr2_2:55594718-55594737 Msa0258910:CDS 35.0%
TTCACTAAACTGGGTTTAAG+AGG + chr2_2:55594873-55594892 Msa0258910:three_prime_UTR 35.0%
! ATCAAAACTGATTCTGTGAG+AGG + chr2_2:55594995-55595014 Msa0258910:three_prime_UTR 35.0%
! TCAAAACTGATTCTGTGAGA+GGG + chr2_2:55594996-55595015 Msa0258910:three_prime_UTR 35.0%
! TGACTGATATTTTGTACTGG+AGG + chr2_2:55595049-55595068 Msa0258910:three_prime_UTR 35.0%
AAAGATGGTACCAACCAAAA+AGG + chr2_2:55595078-55595097 Msa0258910:three_prime_UTR 35.0%
ATCACAATCACCTTTGCAAC+AGG + chr2_2:55592370-55592389 Msa0258910:five_prime_UTR 40.0%
! GTAGGACAGAATCTAAAACC+AGG - chr2_2:55592564-55592583 None:intergenic 40.0%
TATGAACCTTGGGATTTACC+AGG + chr2_2:55592675-55592694 Msa0258910:CDS 40.0%
AAAGAAAGAGACACCTTACC+TGG - chr2_2:55592696-55592715 None:intergenic 40.0%
TTTCATGTGTTGTGTGTCGT+TGG + chr2_2:55592777-55592796 Msa0258910:intron 40.0%
TTTGGCATATTTGGAAGGTG+TGG + chr2_2:55592825-55592844 Msa0258910:intron 40.0%
! TTGGCATATTTGGAAGGTGT+GGG + chr2_2:55592826-55592845 Msa0258910:intron 40.0%
GGTGTGGGATTGTGAATTAT+TGG + chr2_2:55592841-55592860 Msa0258910:intron 40.0%
!! ATTGGGTTGATTAGCTTAGC+TGG + chr2_2:55592859-55592878 Msa0258910:intron 40.0%
CATATGTTGAAACTTGGCAC+AGG - chr2_2:55593038-55593057 None:intergenic 40.0%
ACAGAAATAAGAATCTCCCC+AGG - chr2_2:55593133-55593152 None:intergenic 40.0%
GTACAAACAGAGGACTTTCT+TGG + chr2_2:55593197-55593216 Msa0258910:intron 40.0%
GGGGTCAACATAATAATGAG+AGG - chr2_2:55593276-55593295 None:intergenic 40.0%
! ATGTGTAGGTTTTTCATGGG+GGG - chr2_2:55593295-55593314 None:intergenic 40.0%
! TGTTAACGCATTTAGGGTGA+GGG - chr2_2:55593350-55593369 None:intergenic 40.0%
!! TGTCGGTGTTAACGCATTTA+GGG - chr2_2:55593356-55593375 None:intergenic 40.0%
TCGTGTCTATGTCAATGTGT+CGG - chr2_2:55593373-55593392 None:intergenic 40.0%
CGATAGTCATACATTGACAC+CGG + chr2_2:55593390-55593409 Msa0258910:intron 40.0%
! AGTAAAAGAGCTACTGACTG+TGG + chr2_2:55593622-55593641 Msa0258910:CDS 40.0%
! AAAAGAGCGCAACGTGAAAT+CGG + chr2_2:55593663-55593682 Msa0258910:CDS 40.0%
CATAGGTACAAAGCGAACTT+TGG + chr2_2:55593696-55593715 Msa0258910:CDS 40.0%
!! CGAACTTTGGTGTTTCACTT+AGG + chr2_2:55593709-55593728 Msa0258910:CDS 40.0%
TAACATTCATAGGGAGAGGA+AGG - chr2_2:55593824-55593843 None:intergenic 40.0%
TCACATGAAAGTGATTGTGC+TGG + chr2_2:55593995-55594014 Msa0258910:CDS 40.0%
TCACATGAAAGTGATTGTGC+TGG + chr2_2:55593995-55594014 Msa0258910:CDS 40.0%
AGTGATTGTGCTATCTCAGA+AGG + chr2_2:55594088-55594107 Msa0258910:CDS 40.0%
!! CGGTACTGATCATAGAGAAA+GGG + chr2_2:55594111-55594130 Msa0258910:CDS 40.0%
!! GGTACTGATCATAGAGAAAG+GGG + chr2_2:55594112-55594131 Msa0258910:CDS 40.0%
GAACAAGAAAAGGAGGTTGA+TGG + chr2_2:55594142-55594161 Msa0258910:CDS 40.0%
!! AGGTTGATGGTAGTTCCAAA+CGG + chr2_2:55594155-55594174 Msa0258910:CDS 40.0%
CAGTTATGGTTCAGCTTCAA+TGG + chr2_2:55594186-55594205 Msa0258910:CDS 40.0%
GTCAAAAAACCGTCATTAGC+TGG - chr2_2:55594247-55594266 None:intergenic 40.0%
!!! CGGTTTTTTGACAGACTCTT+CGG + chr2_2:55594255-55594274 Msa0258910:CDS 40.0%
!!! GGTTTTTTGACAGACTCTTC+GGG + chr2_2:55594256-55594275 Msa0258910:CDS 40.0%
CACAACGGAGAATACGATTA+AGG + chr2_2:55594574-55594593 Msa0258910:CDS 40.0%
AAACCAACACATTCTCAACC+AGG + chr2_2:55594603-55594622 Msa0258910:CDS 40.0%
! CATCAAACGATTGGTCATTC+TGG - chr2_2:55594676-55594695 None:intergenic 40.0%
TGACGTTTATGATATGGCTC+TGG + chr2_2:55594928-55594947 Msa0258910:three_prime_UTR 40.0%
!!! TGGCTCTGGAAGTGTATTTT+TGG + chr2_2:55594942-55594961 Msa0258910:three_prime_UTR 40.0%
!! TACTGGAGGTTCTAGAAAGA+TGG + chr2_2:55595063-55595082 Msa0258910:three_prime_UTR 40.0%
!! ACTGAAAGGTCCTTTTTGGT+TGG - chr2_2:55595091-55595110 None:intergenic 40.0%
! TGCAACTGAAAGGTCCTTTT+TGG - chr2_2:55595095-55595114 None:intergenic 40.0%
AAAAAGGACCTTTCAGTTGC+AGG + chr2_2:55595094-55595113 Msa0258910:three_prime_UTR 40.0%
GTTCTTTGCTTGGTTAAGGG+TGG - chr2_2:55592349-55592368 None:intergenic 45.0%
AAAGAGAGGTGGGAAGAAGA+TGG + chr2_2:55592485-55592504 Msa0258910:exon 45.0%
ACCTTGGGATTTACCAGGTA+AGG + chr2_2:55592680-55592699 Msa0258910:intron 45.0%
ACCTTACCTGGTAAATCCCA+AGG - chr2_2:55592684-55592703 None:intergenic 45.0%
ATTGAAACCCTAGCCTGTGT+TGG + chr2_2:55592950-55592969 Msa0258910:intron 45.0%
TCATTCCGTGATACCAACAC+AGG - chr2_2:55592966-55592985 None:intergenic 45.0%
! TTGGCACAGGTTTGGTATCA+CGG - chr2_2:55593025-55593044 None:intergenic 45.0%
GTTGAAACTTGGCACAGGTT+TGG - chr2_2:55593033-55593052 None:intergenic 45.0%
! ATATGTATGTTGGTGGGACC+TGG + chr2_2:55593112-55593131 Msa0258910:intron 45.0%
! TATGTATGTTGGTGGGACCT+GGG + chr2_2:55593113-55593132 Msa0258910:intron 45.0%
CTACTCAGGCACATATGTGT+AGG - chr2_2:55593309-55593328 None:intergenic 45.0%
GGTGAGGGGATTTAGTGATA+AGG - chr2_2:55593335-55593354 None:intergenic 45.0%
! GTTAACGCATTTAGGGTGAG+GGG - chr2_2:55593349-55593368 None:intergenic 45.0%
! GTGTTAACGCATTTAGGGTG+AGG - chr2_2:55593351-55593370 None:intergenic 45.0%
!! GTGTCGGTGTTAACGCATTT+AGG - chr2_2:55593357-55593376 None:intergenic 45.0%
! AAAGAGCGCAACGTGAAATC+GGG + chr2_2:55593664-55593683 Msa0258910:CDS 45.0%
CATTCTGTCCTTTCACCCTT+AGG - chr2_2:55593742-55593761 None:intergenic 45.0%
CTAAGGGTGAAAGGACAGAA+TGG + chr2_2:55593740-55593759 Msa0258910:CDS 45.0%
TGGTTGTTTGTCGTCTCAAG+AGG + chr2_2:55593906-55593925 Msa0258910:CDS 45.0%
GATTGTGCTATCTCAGAAGG+CGG + chr2_2:55594091-55594110 Msa0258910:CDS 45.0%
!! GCGGTACTGATCATAGAGAA+AGG + chr2_2:55594110-55594129 Msa0258910:CDS 45.0%
TGTCTGCGAACAAGAAAAGG+AGG + chr2_2:55594135-55594154 Msa0258910:CDS 45.0%
!! GGTTGATGGTAGTTCCAAAC+GGG + chr2_2:55594156-55594175 Msa0258910:CDS 45.0%
!! GTTGATGGTAGTTCCAAACG+GGG + chr2_2:55594157-55594176 Msa0258910:CDS 45.0%
AATCAGCGACCAGCTAATGA+CGG + chr2_2:55594235-55594254 Msa0258910:CDS 45.0%
!! GTTTTTGAGAAACGAGCTCC+TGG - chr2_2:55594624-55594643 None:intergenic 45.0%
CAAAGAAGCTACTCTTGGAC+TGG - chr2_2:55594653-55594672 None:intergenic 45.0%
TCTGGCAAAGAAGCTACTCT+TGG - chr2_2:55594658-55594677 None:intergenic 45.0%
TTAGGAGACCTGCAACTGAA+AGG - chr2_2:55595105-55595124 None:intergenic 45.0%
TGGTTAAGGGTGGCAAGGTA+AGG - chr2_2:55592339-55592358 None:intergenic 50.0%
TTGCTTGGTTAAGGGTGGCA+AGG - chr2_2:55592344-55592363 None:intergenic 50.0%
CGTGATACCAACACAGGCTA+GGG - chr2_2:55592960-55592979 None:intergenic 50.0%
! CCTAGCCTGTGTTGGTATCA+CGG + chr2_2:55592958-55592977 Msa0258910:intron 50.0%
! ATGTATGTTGGTGGGACCTG+GGG + chr2_2:55593114-55593133 Msa0258910:intron 50.0%
! GAGCTACTGACTGTGGCTAT+TGG + chr2_2:55593629-55593648 Msa0258910:CDS 50.0%
TGTGGCTATTGGAAAGCCAC+TGG + chr2_2:55593640-55593659 Msa0258910:CDS 50.0%
TCACTTAGGTCGTGCACCTA+AGG + chr2_2:55593723-55593742 Msa0258910:CDS 50.0%
CACTTAGGTCGTGCACCTAA+GGG + chr2_2:55593724-55593743 Msa0258910:CDS 50.0%
! ACGAGTACTGTGTCAGTGAC+AGG + chr2_2:55593770-55593789 Msa0258910:CDS 50.0%
GGGTGTCTGCGAACAAGAAA+AGG + chr2_2:55594132-55594151 Msa0258910:CDS 50.0%
! ATAACTGCTGCTTCCCCGTT+TGG - chr2_2:55594173-55594192 None:intergenic 50.0%
AAACGGGGAAGCAGCAGTTA+TGG + chr2_2:55594172-55594191 Msa0258910:CDS 50.0%
GGCATGGATGAGAATGTGCA+AGG - chr2_2:55594545-55594564 None:intergenic 50.0%
GCACATTCTCATCCATGCCA+AGG + chr2_2:55594546-55594565 Msa0258910:CDS 50.0%
GCTCCTGGTTGAGAATGTGT+TGG - chr2_2:55594609-55594628 None:intergenic 50.0%
! GGTAAGGCAAGTGGGGGTAT+GGG - chr2_2:55592323-55592342 None:intergenic 55.0%
AGGTAAGGCAAGTGGGGGTA+TGG - chr2_2:55592324-55592343 None:intergenic 55.0%
TGGCAAGGTAAGGCAAGTGG+GGG - chr2_2:55592329-55592348 None:intergenic 55.0%
GTGGCAAGGTAAGGCAAGTG+GGG - chr2_2:55592330-55592349 None:intergenic 55.0%
GGTGGCAAGGTAAGGCAAGT+GGG - chr2_2:55592331-55592350 None:intergenic 55.0%
GCTGCTTCGTCTATGTTCCC+TGG + chr2_2:55592543-55592562 Msa0258910:CDS 55.0%
CCGTGATACCAACACAGGCT+AGG - chr2_2:55592961-55592980 None:intergenic 55.0%
! GCACAGGTTTGGTATCACGG+TGG - chr2_2:55593022-55593041 None:intergenic 55.0%
TGGTTCTTCTTCTCTCCCCG+TGG + chr2_2:55593574-55593593 Msa0258910:CDS 55.0%
! CACGTTGCGCTCTTTTCCAG+TGG - chr2_2:55593659-55593678 None:intergenic 55.0%
GTCGTGCACCTAAGGGTGAA+AGG + chr2_2:55593731-55593750 Msa0258910:CDS 55.0%
CTGTGTCAGTGACAGGTCTC+CGG + chr2_2:55593777-55593796 Msa0258910:CDS 55.0%
AGACTCTTCGGGCCAGCTAA+AGG + chr2_2:55594267-55594286 Msa0258910:CDS 55.0%
!! CATGCCAAGGCACTGCACAA+CGG + chr2_2:55594559-55594578 Msa0258910:CDS 55.0%
TTCTCCGTTGTGCAGTGCCT+TGG - chr2_2:55594566-55594585 None:intergenic 55.0%
! ATTGCTGTTGTACCGCGCAG+CGG + chr2_2:55594834-55594853 Msa0258910:three_prime_UTR 55.0%
GATTCTCTATGTCCGCTGCG+CGG - chr2_2:55594849-55594868 None:intergenic 55.0%
! AGTGGGGGTATGGGAAGGGT+CGG - chr2_2:55592314-55592333 None:intergenic 60.0%
! GGCAAGTGGGGGTATGGGAA+GGG - chr2_2:55592318-55592337 None:intergenic 60.0%
! AGGCAAGTGGGGGTATGGGA+AGG - chr2_2:55592319-55592338 None:intergenic 60.0%
GGGTGGCAAGGTAAGGCAAG+TGG - chr2_2:55592332-55592351 None:intergenic 60.0%
TGTCAGTGACAGGTCTCCGG+TGG + chr2_2:55593780-55593799 Msa0258910:CDS 60.0%
GTCAGTGACAGGTCTCCGGT+GGG + chr2_2:55593781-55593800 Msa0258910:CDS 60.0%
CGTTGTGCAGTGCCTTGGCA+TGG - chr2_2:55594561-55594580 None:intergenic 60.0%
GCTGCGCGGTACAACAGCAA+TGG - chr2_2:55594835-55594854 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 55592283 55595132 55592283 ID=Msa0258910;Name=Msa0258910
chr2_2 mRNA 55592283 55595132 55592283 ID=Msa0258910-mRNA-1;Parent=Msa0258910;Name=Msa0258910-mRNA-1;_AED=0.21;_eAED=0.21;_QI=221|0.66|0.5|1|1|1|4|335|402
chr2_2 exon 55592283 55592696 55592283 ID=Msa0258910-mRNA-1:exon:16807;Parent=Msa0258910-mRNA-1
chr2_2 exon 55593545 55593816 55593545 ID=Msa0258910-mRNA-1:exon:16808;Parent=Msa0258910-mRNA-1
chr2_2 exon 55593899 55594288 55593899 ID=Msa0258910-mRNA-1:exon:16809;Parent=Msa0258910-mRNA-1
chr2_2 exon 55594444 55595132 55594444 ID=Msa0258910-mRNA-1:exon:16810;Parent=Msa0258910-mRNA-1
chr2_2 five_prime_UTR 55592283 55592503 55592283 ID=Msa0258910-mRNA-1:five_prime_utr;Parent=Msa0258910-mRNA-1
chr2_2 CDS 55592504 55592696 55592504 ID=Msa0258910-mRNA-1:cds;Parent=Msa0258910-mRNA-1
chr2_2 CDS 55593545 55593816 55593545 ID=Msa0258910-mRNA-1:cds;Parent=Msa0258910-mRNA-1
chr2_2 CDS 55593899 55594288 55593899 ID=Msa0258910-mRNA-1:cds;Parent=Msa0258910-mRNA-1
chr2_2 CDS 55594444 55594797 55594444 ID=Msa0258910-mRNA-1:cds;Parent=Msa0258910-mRNA-1
chr2_2 three_prime_UTR 55594798 55595132 55594798 ID=Msa0258910-mRNA-1:three_prime_utr;Parent=Msa0258910-mRNA-1
Gene Sequence

>Msa0258910

ATGGAGATAGTTGTTTCAAAGGAAGCTCAGATGTCTATTGCTGCTTCGTCTATGTTCCCTGGTTTTAGATTCTGTCCTACTGATGAAGAGTTGATTTCTTATTACCTTAGAAAAAAATTGGATGGTCATGAAGAAAGTGTTCAAGTTATTTCTGAGGTTGAGCTTTGTAAATATGAACCTTGGGATTTACCAGCCAAATCATTCATTCAATCAGATAACGAGTGGTTCTTCTTCTCTCCCCGTGGAAGAAAATATCCAAATGGTTCACAAAGTAAAAGAGCTACTGACTGTGGCTATTGGAAAGCCACTGGAAAAGAGCGCAACGTGAAATCGGGTTCTAATGTCATAGGTACAAAGCGAACTTTGGTGTTTCACTTAGGTCGTGCACCTAAGGGTGAAAGGACAGAATGGATTATGCACGAGTACTGTGTCAGTGACAGGTCTCCGGTGGGTAATAATCTGAATGATTCTTTGGTTGTTTGTCGTCTCAAGAGGAACACAGAGTTTCGTGTTAACGATGTTTCAAATAGAGCATCTTCAAGTCAAATAAATCCTGTACATTCACATGAAAGTGATTGTGCTGGTCAAATAAACCCAGTAAATTCACATGAAAGTGATTGTGCTGGTCAAATAAACCCAGTAAATTCACATGAAAGTGATTGTGCTATCTCAGAAGGCGGTACTGATCATAGAGAAAGGGGTGTCTGCGAACAAGAAAAGGAGGTTGATGGTAGTTCCAAACGGGGAAGCAGCAGTTATGGTTCAGCTTCAATGGAACAAATCGATTCTGTGTCTGAATCAAATCAGCGACCAGCTAATGACGGTTTTTTGACAGACTCTTCGGGCCAGCTAAAGATGGATGAAGAGGATTGTTATGCTGAGATACTAAGGAATGATATCATAAAATTAGATGAATCATCAATGTCTCAAGGAGCTCAAACAAGACCAAATAACCTTGCACATTCTCATCCATGCCAAGGCACTGCACAACGGAGAATACGATTAAGGGTTGCGAAACCAACACATTCTCAACCAGGAGCTCGTTTCTCAAAAACAAAGCACCAGTCCAAGAGTAGCTTCTTTGCCAGAATGACCAATCGTTTGATGATATTTGCTTTCTTCATTTTCACTCTCACGGCTATATTATTTTGGTCTTCATTTGGTGGTCACAAACAAGTTAGAAATATTGTAGGAAAATTTCAGGTGTAA
Protein sequence

>Msa0258910

MEIVVSKEAQMSIAASSMFPGFRFCPTDEELISYYLRKKLDGHEESVQVISEVELCKYEPWDLPAKSFIQSDNEWFFFSPRGRKYPNGSQSKRATDCGYWKATGKERNVKSGSNVIGTKRTLVFHLGRAPKGERTEWIMHEYCVSDRSPVGNNLNDSLVVCRLKRNTEFRVNDVSNRASSSQINPVHSHESDCAGQINPVNSHESDCAGQINPVNSHESDCAISEGGTDHRERGVCEQEKEVDGSSKRGSSSYGSASMEQIDSVSESNQRPANDGFLTDSSGQLKMDEEDCYAEILRNDIIKLDESSMSQGAQTRPNNLAHSHPCQGTAQRRIRLRVAKPTHSQPGARFSKTKHQSKSSFFARMTNRLMIFAFFIFTLTAILFWSSFGGHKQVRNIVGKFQV*