AlfalfaGEDB | Msa0970040

M. sativa cultivar zhongmu-4 / Msa0970040

KEGG: K00873
GO: GO:0003674 GO:0003824 GO:0004743 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0006082 GO:0006090 GO:0006091 GO:0006096 GO:0006139 GO:0006163 GO:0006164 GO:0006165 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006754 GO:0006757 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009108 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009132 GO:0009135 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009166 GO:0009167 GO:0009168 GO:0009179 GO:0009185 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009987 GO:0016052 GO:0016053 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0018130 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019439 GO:0019637 GO:0019693 GO:0019752 GO:0032787 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0042866 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046031 GO:0046034 GO:0046390 GO:0046394 GO:0046434 GO:0046483 GO:0046496 GO:0046700 GO:0046939 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072330 GO:0072521 GO:0072522 GO:0072524 GO:0072525 GO:0090407 GO:1901135 GO:1901137 GO:1901292 GO:1901293 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901566 GO:1901575 GO:1901576
PFAM: PF00224.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0970040	XP_013450691.1	99.020	510	5	0	1	510	1	510	0.0	1042

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0970040	sp\|Q42806\|KPYC_SOYBN	92.564	511	37	1	1	510	1	511	0.0	980

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0970040	A0A072U4Q0	99.020	510	5	0	1	510	1	510	0.0	1042

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0006840	Msa0970040	0.814525	1.473914e-51	-8.615850e-47
Msa0010210	Msa0970040	0.824298	8.707502e-54	-8.615850e-47
Msa0021400	Msa0970040	0.809625	1.725246e-50	-8.615850e-47
Msa0026250	Msa0970040	0.853451	2.369493e-61	-8.615850e-47
Msa0035740	Msa0970040	0.850439	1.696414e-60	-8.615850e-47
Msa0036550	Msa0970040	0.835768	1.384376e-56	-8.615850e-47
Msa0039750	Msa0970040	0.807525	4.844860e-50	-8.615850e-47
Msa0043840	Msa0970040	0.834861	2.345744e-56	-8.615850e-47
Msa0044440	Msa0970040	0.811185	7.944334e-51	-8.615850e-47
Msa0045620	Msa0970040	0.805565	1.255411e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0970040	MtrunA17_Chr6g0448901	99.020	510	5	0	1	510	1	510	0.0	1042
Msa0970040	MtrunA17_Chr4g0043311	78.411	491	106	0	20	510	7	497	0.0	818
Msa0970040	MtrunA17_Chr7g0263711	78.004	491	108	0	20	510	10	500	0.0	811
Msa0970040	MtrunA17_Chr4g0043301	79.430	491	101	0	20	510	10	500	0.0	808
Msa0970040	MtrunA17_Chr7g0265591	43.952	496	264	9	22	506	30	522	5.18e-133	395
Msa0970040	MtrunA17_Chr1g0197911	42.828	495	270	7	22	506	30	521	1.57e-131	392
Msa0970040	MtrunA17_Chr1g0179541	43.260	497	252	7	22	506	30	508	1.19e-126	379
Msa0970040	MtrunA17_Chr1g0202291	36.875	480	260	12	21	492	104	548	1.65e-85	275
Msa0970040	MtrunA17_Chr5g0400361	36.709	474	269	11	21	492	78	522	6.54e-85	272
Msa0970040	MtrunA17_Chr6g0463101	35.967	481	263	12	21	492	106	550	5.97e-84	270

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0970040	AT5G08570.1	88.039	510	61	0	1	510	1	510	947
Msa0970040	AT5G08570.2	88.039	510	61	0	1	510	1	510	947
Msa0970040	AT5G08570.3	88.039	510	61	0	1	510	1	510	947
Msa0970040	AT5G63680.3	86.863	510	67	0	1	510	1	510	932
Msa0970040	AT5G63680.1	86.863	510	67	0	1	510	1	510	932
Msa0970040	AT5G63680.2	86.863	510	67	0	1	510	1	510	932
Msa0970040	AT5G56350.1	79.837	491	99	0	20	510	8	498	820
Msa0970040	AT4G26390.1	78.208	491	107	0	20	510	7	497	803
Msa0970040	AT3G04050.1	69.960	506	147	4	6	506	1	506	726
Msa0970040	AT3G55650.1	68.390	503	155	3	12	510	8	510	703

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Find 148 sgRNAs with CRISPR-Local

Find 205 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCTATTCAACTCAAAGA+AGG	0.544786	6_4:+1474678	Msa0970040:CDS
AACCTTGGTGTCGAGCATGA+CGG	0.653974	6_4:-1473944	None:intergenic
AACTGAATATGCTTAGCATG+TGG	0.639472	6_4:-1475071	None:intergenic
AAGGAAGATATTCTTGAATG+GGG	0.623075	6_4:+1474966	Msa0970040:CDS
AAGTACTGATTATGAAATCA+AGG	0.465812	6_4:+1474716	Msa0970040:CDS
AAGTCTGCTATGCATTCTAC+TGG	0.527158	6_4:+1473910	Msa0970040:CDS
AATACCATTCTATGCTCGGA+TGG	0.643051	6_4:+1474798	Msa0970040:CDS
AATACGATGAAGAGCAACAA+CGG	0.684681	6_4:-1476154	None:intergenic
AATCCATGATCAAGTCTCCT+CGG	0.597161	6_4:+1475587	Msa0970040:CDS
AATCTTGTCTGTGGTAGTTC+CGG	0.438220	6_4:+1475939	Msa0970040:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GACCAAAATTGTTTGTACTT+TGG	+	chr6_4:1473768-1473787	Msa0970040:CDS	30.0%
ATAGAAACAAGAACAAACCT+TGG	-	chr6_4:1473962-1473981	None:intergenic	30.0%
AAGAGAATCATAACTGTACA+AGG	-	chr6_4:1474535-1474554	None:intergenic	30.0%
AAACCTATTCAACTCAAAGA+AGG	+	chr6_4:1474678-1474697	Msa0970040:CDS	30.0%
TAACTCATTGATATCATCTC+TGG	-	chr6_4:1474747-1474766	None:intergenic	30.0%
AAGGAAGATATTCTTGAATG+GGG	+	chr6_4:1474966-1474985	Msa0970040:CDS	30.0%
ATCACCATTTCATTTGTTTG+TGG	+	chr6_4:1475152-1475171	Msa0970040:intron	30.0%
AACACCACAAACAAATGAAA+TGG	-	chr6_4:1475159-1475178	None:intergenic	30.0%
TGCAATTCATTAATGGTGAA+GGG	-	chr6_4:1475191-1475210	None:intergenic	30.0%
ATGCAATTCATTAATGGTGA+AGG	-	chr6_4:1475192-1475211	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_4	gene	1473470	1476505	1473470	ID=Msa0970040;Name=Msa0970040
chr6_4	mRNA	1473470	1476505	1473470	ID=Msa0970040-mRNA-1;Parent=Msa0970040;Name=Msa0970040-mRNA-1;_AED=0.01;_eAED=0.01;_QI=140\|1\|1\|1\|0.66\|0.5\|4\|290\|510
chr6_4	exon	1473470	1473527	1473470	ID=Msa0970040-mRNA-1:exon:733;Parent=Msa0970040-mRNA-1
chr6_4	exon	1473624	1473963	1473624	ID=Msa0970040-mRNA-1:exon:734;Parent=Msa0970040-mRNA-1
chr6_4	exon	1474642	1475103	1474642	ID=Msa0970040-mRNA-1:exon:735;Parent=Msa0970040-mRNA-1
chr6_4	exon	1475403	1476505	1475403	ID=Msa0970040-mRNA-1:exon:736;Parent=Msa0970040-mRNA-1
chr6_4	five_prime_UTR	1473470	1473527	1473470	ID=Msa0970040-mRNA-1:five_prime_utr;Parent=Msa0970040-mRNA-1
chr6_4	five_prime_UTR	1473624	1473705	1473624	ID=Msa0970040-mRNA-1:five_prime_utr;Parent=Msa0970040-mRNA-1
chr6_4	CDS	1473706	1473963	1473706	ID=Msa0970040-mRNA-1:cds;Parent=Msa0970040-mRNA-1
chr6_4	CDS	1474642	1475103	1474642	ID=Msa0970040-mRNA-1:cds;Parent=Msa0970040-mRNA-1
chr6_4	CDS	1475403	1476215	1475403	ID=Msa0970040-mRNA-1:cds;Parent=Msa0970040-mRNA-1
chr6_4	three_prime_UTR	1476216	1476505	1476216	ID=Msa0970040-mRNA-1:three_prime_utr;Parent=Msa0970040-mRNA-1

Gene Sequence

>Msa0970040

ATGTCGAACATAGACATTGAAGGGATCTTGAACCAACTACCAAACGATGGTCGTGTTCCTAAGACCAAAATTGTTTGTACTTTGGGTCCTGCTTCGAGATCTGTTGAGATGATTCAAAAACTTCTTAAAGCTGGCATGAATGTTGCTCGTTTCAATTTTTCACATGGTACTCATGAATATCATCAGGAAACCCTCGATAATCTCAAGTCTGCTATGCATTCTACTGGTATTCTCTGTGCCGTCATGCTCGACACCAAGGGGCCTGAGATTCGGACTGGCTTTCTGAAAGATGGAAAACCTATTCAACTCAAAGAAGGACAAGAAATCACCATAAGTACTGATTATGAAATCAAGGGAGATCCAGAGATGATATCAATGAGTTACAAGAAACTGCCTGTCCACTTGAAGCCTGGAAATACCATTCTATGCTCGGATGGAACAATCAGTCTCACTGTTTTGTCCTGTGATCAAGAAGCCGGTACTGTTAGATGTCGCTGTCAAAACTCTGCAATGTTGGGTGAGAGGAAAAATGTCAATCTCCCTGGTGTTGTGGTGGATCTTCCCACTCTTACTGACAAGGATAAGGAAGATATTCTTGAATGGGGTGTCCCTAACAATATTGATATGATTGCTCTTTCATTTGTTCGTAAGGGCTCTGATCTTGTTAATGTCCGCAAGGTTCTCGGGCCACATGCTAAGCATATTCAGTTGATGTCAAAGGTTGAGAATCAGGAGGGAGTCATGAACTTTGATGAGATCCTGCGTGAGACTGATGCGTTCATGGTGGCCCGTGGTGATCTTGGAATGGAAATCCCAGTTGAGAAGATTTTCCTGGCACAGAAAATGATGATTTATAAGTGTAATCTTGTTGGCAAGCCTGTGGTGACTGCTACCCAGATGCTTGAATCCATGATCAAGTCTCCTCGGCCAACCCGAGCCGAAGCAACTGATGTAGCCAATGCAGTTCTTGATGGAACCGACTGTGTCATGCTTAGTGGTGAAAGTGCTGCTGGAGCATACCCTGAACTTGCTGTCAAAATCATGGCTCGCATTTGTGTTGAAGCAGAATCATCCCTTGATTATGGTGCTATATTCAAAGAGATGATAAGGTCTACTCCATTGCCTATGAGTCCATTGGAAAGTCTTGCATCATCTGCTGTACGCACAGCCAATAAGGCCAGAGCGAAACTCATTGTCGTGCTGACACGAGGTGGGAGTACTGCCAAGTTAGTTGCTAAGTATAGGCCAGCAGTTCCAATCTTGTCTGTGGTAGTTCCGGTTTTGACCACAGACTCATTTGATTGGACCTGCAGTGATGAGGCACCAGCAAGGCACAGCTTAATATACAGAGGCTTGATTCCTATATTGGCAGAAGGATCTGCAAGAGCTACTGATGCAGAATCTACAGATGCAATTCTGGAAGCTTCTCTTAAGTCAGCAACACAAAAGGGGCTTTGTAAACCTGGTGACGCCGTTGTTGCTCTTCATCGTATTGGAGCTGCTTCTGTTATAAAGATCTGCATAGTGAAGTGA

Protein sequence

>Msa0970040

MSNIDIEGILNQLPNDGRVPKTKIVCTLGPASRSVEMIQKLLKAGMNVARFNFSHGTHEYHQETLDNLKSAMHSTGILCAVMLDTKGPEIRTGFLKDGKPIQLKEGQEITISTDYEIKGDPEMISMSYKKLPVHLKPGNTILCSDGTISLTVLSCDQEAGTVRCRCQNSAMLGERKNVNLPGVVVDLPTLTDKDKEDILEWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKHIQLMSKVENQEGVMNFDEILRETDAFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPELAVKIMARICVEAESSLDYGAIFKEMIRSTPLPMSPLESLASSAVRTANKARAKLIVVLTRGGSTAKLVAKYRPAVPILSVVVPVLTTDSFDWTCSDEAPARHSLIYRGLIPILAEGSARATDAESTDAILEASLKSATQKGLCKPGDAVVALHRIGAASVIKICIVK*