Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0530300 | XP_003604369.1 | 100.000 | 264 | 0 | 0 | 1 | 264 | 1 | 264 | 0.0 | 545 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0530300 | G7JGX3 | 100.000 | 264 | 0 | 0 | 1 | 264 | 1 | 264 | 0.0 | 545 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0122530 | Msa0530300 | 0.800875 | 1.173898e-48 | -8.615850e-47 |
| Msa0318680 | Msa0530300 | 0.800862 | 1.180870e-48 | -8.615850e-47 |
| Msa0336540 | Msa0530300 | 0.814837 | 1.256954e-51 | -8.615850e-47 |
| Msa0527540 | Msa0530300 | 0.809224 | 2.103349e-50 | -8.615850e-47 |
| Msa0530300 | Msa0549450 | 0.805836 | 1.101393e-49 | -8.615850e-47 |
| Msa0530300 | Msa0626920 | 0.816605 | 5.073518e-52 | -8.615850e-47 |
| Msa0530300 | Msa0673160 | 0.808811 | 2.578416e-50 | -8.615850e-47 |
| Msa0530300 | Msa0910960 | 0.812767 | 3.592910e-51 | -8.615850e-47 |
| Msa0530300 | Msa1159160 | 0.800753 | 1.243285e-48 | -8.615850e-47 |
| Msa0530300 | Msa1218620 | 0.814311 | 1.643744e-51 | -8.615850e-47 |
| Msa0530300 | Msa1307140 | 0.826939 | 2.059551e-54 | -8.615850e-47 |
| Msa0530300 | Msa1341060 | 0.835881 | 1.295801e-56 | -8.615850e-47 |
| Msa0530300 | Msa1392980 | 0.814653 | 1.380569e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0530300 | MtrunA17_Chr4g0003181 | 100.000 | 264 | 0 | 0 | 1 | 264 | 1 | 264 | 0.0 | 545 |
| Msa0530300 | MtrunA17_Chr2g0333211 | 67.803 | 264 | 76 | 6 | 1 | 261 | 1 | 258 | 1.04e-115 | 332 |
| Msa0530300 | MtrunA17_Chr8g0379111 | 87.755 | 49 | 6 | 0 | 182 | 230 | 1 | 49 | 3.66e-23 | 89.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0530300 | AT5G32440.1 | 48.699 | 269 | 128 | 4 | 1 | 264 | 1 | 264 | 9.33e-70 | 216 |
| Msa0530300 | AT5G32440.3 | 48.327 | 269 | 130 | 3 | 1 | 264 | 1 | 265 | 2.22e-68 | 213 |
| Msa0530300 | AT1G80040.1 | 40.377 | 265 | 140 | 4 | 1 | 264 | 1 | 248 | 8.35e-56 | 180 |
| Msa0530300 | AT1G80040.4 | 45.324 | 139 | 76 | 0 | 126 | 264 | 37 | 175 | 6.79e-40 | 136 |
| Msa0530300 | AT5G32440.2 | 46.561 | 189 | 91 | 4 | 1 | 184 | 1 | 184 | 9.09e-32 | 116 |
| Msa0530300 | AT5G02510.2 | 32.271 | 251 | 140 | 6 | 20 | 264 | 27 | 253 | 1.23e-30 | 115 |
| Msa0530300 | AT1G80040.2 | 37.097 | 186 | 99 | 4 | 1 | 185 | 1 | 169 | 8.75e-27 | 103 |
| Msa0530300 | AT5G02510.1 | 39.568 | 139 | 77 | 3 | 128 | 264 | 46 | 179 | 1.33e-26 | 102 |
| Msa0530300 | AT5G02510.3 | 39.568 | 139 | 77 | 3 | 128 | 264 | 55 | 188 | 2.22e-26 | 102 |
| Msa0530300 | AT1G80040.3 | 35.025 | 197 | 99 | 5 | 1 | 185 | 1 | 180 | 1.08e-23 | 95.1 |
Find 98 sgRNAs with CRISPR-Local
Find 299 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTGAACTTGGATGAAATT+AGG | 0.107120 | 4_1:+4347228 | None:intergenic |
| GGGTTAGGGTTTAGAGAAAT+TGG | 0.219430 | 4_1:+4347249 | None:intergenic |
| ACTAGTTGCTGCCTTTATTA+TGG | 0.227028 | 4_1:+4343232 | None:intergenic |
| CTAGATCGTTGTCACATTCT+TGG | 0.233336 | 4_1:+4345570 | None:intergenic |
| ATTGAACTTGGATGAAATTA+GGG | 0.253778 | 4_1:+4347229 | None:intergenic |
| GGAGCTGCAGGTGGGAATTC+TGG | 0.255949 | 4_1:-4345512 | Msa0530300:CDS |
| TTTAGAGAAATTGGGGATTC+TGG | 0.259513 | 4_1:+4347258 | None:intergenic |
| AATAATAGGCAATATATATA+TGG | 0.265461 | 4_1:+4343040 | None:intergenic |
| CTGTCAAATTCTATCTATAT+CGG | 0.283077 | 4_1:+4343084 | None:intergenic |
| ACAAATAAAAGCGGAATAAT+AGG | 0.284748 | 4_1:+4343026 | None:intergenic |
| GAGGAAAAGGAGGAGGAAAT+TGG | 0.306131 | 4_1:-4347170 | Msa0530300:five_prime_UTR |
| ATATTATCACTGTTGACTAT+TGG | 0.311734 | 4_1:-4342964 | Msa0530300:three_prime_UTR |
| TGATTTAATTAGAAGATATC+AGG | 0.319834 | 4_1:+4343267 | None:intergenic |
| ATATATATGGGAATGACTTA+TGG | 0.338317 | 4_1:+4343053 | None:intergenic |
| GGTTAGGGTTTAGAGAAATT+GGG | 0.346096 | 4_1:+4347250 | None:intergenic |
| GCAAATCGAAGTGCTGATTA+AGG | 0.357388 | 4_1:-4344127 | Msa0530300:CDS |
| TAATTTCATCCAAGTTCAAT+TGG | 0.375651 | 4_1:-4347226 | Msa0530300:five_prime_UTR |
| CCGTAATCTCTTCCCTCATA+TGG | 0.383614 | 4_1:-4346967 | Msa0530300:CDS |
| ACTTGGATGAAATTAGGGTT+AGG | 0.389192 | 4_1:+4347234 | None:intergenic |
| ATCTATATTCCAATTGAACT+TGG | 0.402541 | 4_1:+4347217 | None:intergenic |
| GAGCCTGAATGAGCTTTACT+TGG | 0.410114 | 4_1:-4345534 | Msa0530300:CDS |
| CTCCCAAGTAAAGCTCATTC+AGG | 0.411818 | 4_1:+4345531 | None:intergenic |
| GTTATAGTTTGTGTAGCTTC+TGG | 0.415440 | 4_1:-4343160 | Msa0530300:three_prime_UTR |
| CTTCTCCTCCCTTATCTAAG+AGG | 0.420316 | 4_1:-4347055 | Msa0530300:CDS |
| CTTGGATGAAATTAGGGTTA+GGG | 0.421309 | 4_1:+4347235 | None:intergenic |
| CCATATGAGGGAAGAGATTA+CGG | 0.421515 | 4_1:+4346967 | None:intergenic |
| ATCCATTCGGCTCCATCTGC+AGG | 0.436105 | 4_1:+4344792 | None:intergenic |
| GAGCTTTACTTGGGAGCTGC+AGG | 0.442768 | 4_1:-4345524 | Msa0530300:CDS |
| CGAGAAATCAATCAGTGAAC+GGG | 0.443703 | 4_1:-4344688 | Msa0530300:CDS |
| TTCTATCTATATCGGGTTGA+CGG | 0.443884 | 4_1:+4343092 | None:intergenic |
| CAACAGAGCAACGGATTTCA+AGG | 0.451603 | 4_1:-4343300 | Msa0530300:CDS |
| ACAGATGAATAACTATGCTT+TGG | 0.452596 | 4_1:-4343343 | Msa0530300:intron |
| TCTATATCATAGTAAATTTG+AGG | 0.453555 | 4_1:+4342925 | None:intergenic |
| TGTGTAGAATGCCATAATAA+AGG | 0.460100 | 4_1:-4343243 | Msa0530300:three_prime_UTR |
| GAGAGAAGGGTTGAAAATTG+AGG | 0.463970 | 4_1:+4347299 | None:intergenic |
| TCAAAGAGAGAAGGAATAGT+TGG | 0.466372 | 4_1:+4346996 | None:intergenic |
| AATCAACGAAGAAGAGGAAA+AGG | 0.466917 | 4_1:-4347183 | Msa0530300:five_prime_UTR |
| ATAATAGGCAATATATATAT+GGG | 0.470356 | 4_1:+4343041 | None:intergenic |
| TTTGGCAATGCATTTGAAGC+AGG | 0.476717 | 4_1:-4343325 | Msa0530300:CDS |
| AGTACCAACTGGTCCATATG+AGG | 0.477018 | 4_1:+4346954 | None:intergenic |
| ATTGGGGATTCTGGTGATGA+TGG | 0.481354 | 4_1:+4347267 | None:intergenic |
| TGTCAAATTCTATCTATATC+GGG | 0.485077 | 4_1:+4343085 | None:intergenic |
| CAGTGAACGGGCAAGGGCTG+AGG | 0.489984 | 4_1:-4344676 | Msa0530300:CDS |
| GGAATAGTTGGAAAACGAAT+CGG | 0.490884 | 4_1:+4347008 | None:intergenic |
| AGCCCGTGCTGCTAGAATGC+TGG | 0.490982 | 4_1:-4344718 | Msa0530300:CDS |
| TCTATCTATATCGGGTTGAC+GGG | 0.492502 | 4_1:+4343093 | None:intergenic |
| TCAGGAAAATTTGATGCTGA+AGG | 0.495369 | 4_1:-4344151 | Msa0530300:intron |
| CTCTTAGATAAGGGAGGAGA+AGG | 0.496101 | 4_1:+4347056 | None:intergenic |
| GTTAGGGTTTAGAGAAATTG+GGG | 0.497691 | 4_1:+4347251 | None:intergenic |
| ATGGTGGAAAAGAGAGAGAA+GGG | 0.501045 | 4_1:+4347286 | None:intergenic |
| ATTGCAGCATTTGAAGCAGT+TGG | 0.502947 | 4_1:-4344031 | Msa0530300:CDS |
| ACAACGAAGCCTCTTAGATA+AGG | 0.503637 | 4_1:+4347046 | None:intergenic |
| CTCCAGCATTCTAGCAGCAC+GGG | 0.511638 | 4_1:+4344716 | None:intergenic |
| TTGAACAGCCTTCCTGCAGA+TGG | 0.513895 | 4_1:-4344804 | Msa0530300:CDS |
| AATCAGAAAGACGCTCGTGC+TGG | 0.519052 | 4_1:+4344073 | None:intergenic |
| CAACGAAGCCTCTTAGATAA+GGG | 0.519298 | 4_1:+4347047 | None:intergenic |
| AAACTGATATTGAACATTGT+GGG | 0.521362 | 4_1:+4342988 | None:intergenic |
| CAAGAGTTCTGATCTGCTCC+TGG | 0.529738 | 4_1:+4343998 | None:intergenic |
| CTTTACTTGGGAGCTGCAGG+TGG | 0.530988 | 4_1:-4345521 | Msa0530300:CDS |
| ATTGGAATATAGATCGAAGA+AGG | 0.532334 | 4_1:-4347208 | Msa0530300:five_prime_UTR |
| ATCAATCAGTGAACGGGCAA+GGG | 0.532900 | 4_1:-4344682 | Msa0530300:CDS |
| AATCAATCAGTGAACGGGCA+AGG | 0.533202 | 4_1:-4344683 | Msa0530300:CDS |
| GCAGTTGGCGTCTCAATACC+AGG | 0.534548 | 4_1:-4344016 | Msa0530300:CDS |
| GCAGGTAAATTGGAGAATGA+TGG | 0.544065 | 4_1:-4344858 | Msa0530300:intron |
| TGACGGGATAGAATCACTCT+TGG | 0.545475 | 4_1:+4343109 | None:intergenic |
| AAGGAAAATCAACGAAGAAG+AGG | 0.549122 | 4_1:-4347189 | Msa0530300:five_prime_UTR |
| CAAACTGATATTGAACATTG+TGG | 0.551797 | 4_1:+4342987 | None:intergenic |
| TTAGATAAGGGAGGAGAAGG+AGG | 0.552484 | 4_1:+4347059 | None:intergenic |
| GGGGATTCTGGTGATGATGG+TGG | 0.557644 | 4_1:+4347270 | None:intergenic |
| CGAAGAAGAGGAAAAGGAGG+AGG | 0.558785 | 4_1:-4347177 | Msa0530300:five_prime_UTR |
| GATGGTGGAAAAGAGAGAGA+AGG | 0.559696 | 4_1:+4347285 | None:intergenic |
| ATCCACATTGACATCAATCT+CGG | 0.564292 | 4_1:+4345475 | None:intergenic |
| CAACGAAGAAGAGGAAAAGG+AGG | 0.569382 | 4_1:-4347180 | Msa0530300:five_prime_UTR |
| TTTAATTAGAAGATATCAGG+TGG | 0.570495 | 4_1:+4343270 | None:intergenic |
| CTTCCCTCATATGGACCAGT+TGG | 0.575644 | 4_1:-4346958 | Msa0530300:intron |
| ATTGATGTCAATGTGGATGC+AGG | 0.578194 | 4_1:-4345470 | Msa0530300:intron |
| AGCCTGAATGAGCTTTACTT+GGG | 0.578573 | 4_1:-4345533 | Msa0530300:CDS |
| CGGAGCTGATCAAAGAGAGA+AGG | 0.579956 | 4_1:+4346987 | None:intergenic |
| CAGGTAAATTGGAGAATGAT+GGG | 0.588643 | 4_1:-4344857 | Msa0530300:CDS |
| TCGAGAAATCAATCAGTGAA+CGG | 0.595325 | 4_1:-4344689 | Msa0530300:CDS |
| ACGAATCGGAGAAGTAGAAG+AGG | 0.605128 | 4_1:+4347022 | None:intergenic |
| CCTCCAGCATTCTAGCAGCA+CGG | 0.612473 | 4_1:+4344715 | None:intergenic |
| GGCAACAGATGCTCTTCAGA+AGG | 0.617799 | 4_1:-4344655 | Msa0530300:intron |
| GTAGAGACAACAAATAAAAG+CGG | 0.618569 | 4_1:+4343017 | None:intergenic |
| AAGCAGGCTCAACAGAGCAA+CGG | 0.619847 | 4_1:-4343309 | Msa0530300:CDS |
| ATTCGGCTCCATCTGCAGGA+AGG | 0.623660 | 4_1:+4344796 | None:intergenic |
| CCGTGCTGCTAGAATGCTGG+AGG | 0.628538 | 4_1:-4344715 | Msa0530300:CDS |
| GGCTCTAGCATCATCAACAC+TGG | 0.633203 | 4_1:+4344737 | None:intergenic |
| TTAATTAGAAGATATCAGGT+GGG | 0.635471 | 4_1:+4343271 | None:intergenic |
| TTTACTTGGGAGCTGCAGGT+GGG | 0.636819 | 4_1:-4345520 | Msa0530300:CDS |
| ACGATGTCTGCTGCTGTGTG+CGG | 0.637537 | 4_1:-4347113 | Msa0530300:CDS |
| GGAGCAGATCAGAACTCTTG+AGG | 0.638754 | 4_1:-4343995 | Msa0530300:intron |
| GTACCAACTGGTCCATATGA+GGG | 0.643655 | 4_1:+4346955 | None:intergenic |
| TTCCTGCAGATGGAGCCGAA+TGG | 0.648905 | 4_1:-4344794 | Msa0530300:CDS |
| AACAGAGCAACGGATTTCAA+GGG | 0.652217 | 4_1:-4343299 | Msa0530300:CDS |
| TCGAATTCGATAGTCAGCAT+CGG | 0.654412 | 4_1:-4347140 | Msa0530300:five_prime_UTR |
| CGAAGCCTCTTAGATAAGGG+AGG | 0.663561 | 4_1:+4347050 | None:intergenic |
| ATCCGAGATTGATGTCAATG+TGG | 0.731294 | 4_1:-4345477 | Msa0530300:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCAAAATTCAAAAAATAAAA+AGG | + | chr4_1:4343307-4343326 | None:intergenic | 10.0% |
| !!! | TTGTTTTATTATTTGAATTT+GGG | - | chr4_1:4343609-4343628 | Msa0530300:intron | 10.0% |
| !!! | TAATTGTTGTTTTTTTAATA+AGG | - | chr4_1:4344356-4344375 | Msa0530300:intron | 10.0% |
| !!! | AATTGTTGTTTTTTTAATAA+GGG | - | chr4_1:4344357-4344376 | Msa0530300:intron | 10.0% |
| !! | AAAGTTAAAATATTAATACA+CGG | + | chr4_1:4344605-4344624 | None:intergenic | 10.0% |
| !! | TCAAAAAATAAAAAGGAAAA+TGG | + | chr4_1:4343300-4343319 | None:intergenic | 15.0% |
| !!! | GTTGTTTTATTATTTGAATT+TGG | - | chr4_1:4343608-4343627 | Msa0530300:intron | 15.0% |
| !!! | GTTTAGTTGTTATTTAATTT+CGG | - | chr4_1:4343776-4343795 | Msa0530300:intron | 15.0% |
| !!! | TTTAGTTGTTATTTAATTTC+GGG | - | chr4_1:4343777-4343796 | Msa0530300:intron | 15.0% |
| !! | AAGTTAAAATATTAATACAC+GGG | + | chr4_1:4344604-4344623 | None:intergenic | 15.0% |
| !!! | GTATTAATATTTTAACTTTC+AGG | - | chr4_1:4344606-4344625 | Msa0530300:intron | 15.0% |
| !! | ATAATAGGCAATATATATAT+GGG | + | chr4_1:4347177-4347196 | None:intergenic | 15.0% |
| !! | AATAATAGGCAATATATATA+TGG | + | chr4_1:4347178-4347197 | None:intergenic | 15.0% |
| !!! | TTTATGTTTAGTTTAATGCA+TGG | - | chr4_1:4343417-4343436 | Msa0530300:intron | 20.0% |
| !!! | TAATTGTTGTTTTTCTAACA+AGG | - | chr4_1:4343519-4343538 | Msa0530300:intron | 20.0% |
| !!! | AATTGTTGTTTTTCTAACAA+GGG | - | chr4_1:4343520-4343539 | Msa0530300:intron | 20.0% |
| !! | TGCAAAAATAATTTGAATTG+AGG | - | chr4_1:4343652-4343671 | Msa0530300:intron | 20.0% |
| !!! | TGAAGATGTTTTTTTTATGA+GGG | - | chr4_1:4343710-4343729 | Msa0530300:intron | 20.0% |
| !!! | ATGTGCTTTTTTTTTTTTTG+TGG | + | chr4_1:4345057-4345076 | None:intergenic | 20.0% |
| !!! | TGTATTACTATTTTGTGATA+TGG | - | chr4_1:4345219-4345238 | Msa0530300:intron | 20.0% |
| !! | CTAAATATGTGTTTATAAGT+GGG | - | chr4_1:4345894-4345913 | Msa0530300:intron | 20.0% |
| !! | TAAATATGTGTTTATAAGTG+GGG | - | chr4_1:4345895-4345914 | Msa0530300:intron | 20.0% |
| !!! | ATTCTTTTAAAAACGCATTT+AGG | - | chr4_1:4346117-4346136 | Msa0530300:intron | 20.0% |
| !!! | TGTGTGAATTTTTTAAAGAT+AGG | - | chr4_1:4346323-4346342 | Msa0530300:intron | 20.0% |
| !! | TGATTTAATTAGAAGATATC+AGG | + | chr4_1:4346951-4346970 | None:intergenic | 20.0% |
| !! | AAAAAGAGAACATAATTAAC+TGG | + | chr4_1:4347014-4347033 | None:intergenic | 20.0% |
| !! | TCTATATCATAGTAAATTTG+AGG | + | chr4_1:4347293-4347312 | None:intergenic | 20.0% |
| ! | ATTGAACTTGGATGAAATTA+GGG | + | chr4_1:4342989-4343008 | None:intergenic | 25.0% |
| ! | AATTGAACTTGGATGAAATT+AGG | + | chr4_1:4342990-4343009 | None:intergenic | 25.0% |
| ! | TAATTTCATCCAAGTTCAAT+TGG | - | chr4_1:4342989-4343008 | Msa0530300:three_prime_UTR | 25.0% |
| ! | ATCTATATTCCAATTGAACT+TGG | + | chr4_1:4343001-4343020 | None:intergenic | 25.0% |
| !!! | CTGAAGATGTTTTTTTTATG+AGG | - | chr4_1:4343709-4343728 | Msa0530300:intron | 25.0% |
| ! | GACAATTTGAATTGAGTAAT+TGG | - | chr4_1:4343874-4343893 | Msa0530300:intron | 25.0% |
| !!! | GTGATTGTTGTTTTCTAATA+AGG | - | chr4_1:4343948-4343967 | Msa0530300:intron | 25.0% |
| !! | AAAAAAGACCTGATTTTGAA+TGG | - | chr4_1:4344118-4344137 | Msa0530300:CDS | 25.0% |
| ! | AGTCCATACAAGTTAATAAA+AGG | + | chr4_1:4344160-4344179 | None:intergenic | 25.0% |
| ! | GTTTGACGGTAATTAAATAA+CGG | - | chr4_1:4344181-4344200 | Msa0530300:intron | 25.0% |
| !! | GTTTGTTTGTTTCTTATGAA+GGG | - | chr4_1:4344379-4344398 | Msa0530300:intron | 25.0% |
| !! | TGAATGAGATATTTTGTGTT+TGG | - | chr4_1:4344450-4344469 | Msa0530300:intron | 25.0% |
| !!! | CTACTCTTTTTATTTAGTTC+AGG | - | chr4_1:4344494-4344513 | Msa0530300:intron | 25.0% |
| !!! | TCTTTTTATTTAGTTCAGGA+GGG | - | chr4_1:4344498-4344517 | Msa0530300:intron | 25.0% |
| ! | GTAATGAAAGAGATATTTGA+TGG | - | chr4_1:4344520-4344539 | Msa0530300:intron | 25.0% |
| ! | CAAATAAATGTTTGGCTAAT+TGG | - | chr4_1:4344783-4344802 | Msa0530300:CDS | 25.0% |
| !! | TTTCATATTTTGCGAAACAA+TGG | - | chr4_1:4344847-4344866 | Msa0530300:CDS | 25.0% |
| ! | AGAGGATGAAAGAAATAAAA+GGG | + | chr4_1:4344968-4344987 | None:intergenic | 25.0% |
| ! | AAGAGGATGAAAGAAATAAA+AGG | + | chr4_1:4344969-4344988 | None:intergenic | 25.0% |
| !!! | TTTTTTGTGGTAAATAGAGA+GGG | + | chr4_1:4345044-4345063 | None:intergenic | 25.0% |
| !!! | TTTTTTTGTGGTAAATAGAG+AGG | + | chr4_1:4345045-4345064 | None:intergenic | 25.0% |
| !! | ATTTTATATACACTCCTCTT+TGG | - | chr4_1:4345138-4345157 | Msa0530300:intron | 25.0% |
| ! | AACAAAAAAGTCAATCCATT+CGG | + | chr4_1:4345439-4345458 | None:intergenic | 25.0% |
| ! | CCACTTATAAACACATATTT+AGG | + | chr4_1:4345896-4345915 | None:intergenic | 25.0% |
| ! | CCTAAATATGTGTTTATAAG+TGG | - | chr4_1:4345893-4345912 | Msa0530300:intron | 25.0% |
| ! | AAATATGTGTTTATAAGTGG+GGG | - | chr4_1:4345896-4345915 | Msa0530300:intron | 25.0% |
| !! | CCATTAATAGTGTTGAAATT+GGG | + | chr4_1:4345964-4345983 | None:intergenic | 25.0% |
| !! | ACCATTAATAGTGTTGAAAT+TGG | + | chr4_1:4345965-4345984 | None:intergenic | 25.0% |
| ! | TTCAACACTATTAATGGTTT+AGG | - | chr4_1:4345967-4345986 | Msa0530300:intron | 25.0% |
| !! | CACAAGATGTTTAAATTTTC+AGG | - | chr4_1:4346046-4346065 | Msa0530300:intron | 25.0% |
| ! | AATTTGACAGTGAACAAAAA+AGG | + | chr4_1:4346262-4346281 | None:intergenic | 25.0% |
| ! | AAAATTCACACAAAGTTACA+AGG | + | chr4_1:4346315-4346334 | None:intergenic | 25.0% |
| ! | TTTGTAGATTTAAAAGTGAG+TGG | - | chr4_1:4346571-4346590 | Msa0530300:intron | 25.0% |
| ! | TTGTAGATTTAAAAGTGAGT+GGG | - | chr4_1:4346572-4346591 | Msa0530300:intron | 25.0% |
| ! | TTAATTAGAAGATATCAGGT+GGG | + | chr4_1:4346947-4346966 | None:intergenic | 25.0% |
| ! | TTTAATTAGAAGATATCAGG+TGG | + | chr4_1:4346948-4346967 | None:intergenic | 25.0% |
| ! | TGTCAAATTCTATCTATATC+GGG | + | chr4_1:4347133-4347152 | None:intergenic | 25.0% |
| ! | CTGTCAAATTCTATCTATAT+CGG | + | chr4_1:4347134-4347153 | None:intergenic | 25.0% |
| ! | ATATATATGGGAATGACTTA+TGG | + | chr4_1:4347165-4347184 | None:intergenic | 25.0% |
| ! | ACAAATAAAAGCGGAATAAT+AGG | + | chr4_1:4347192-4347211 | None:intergenic | 25.0% |
| ! | AAACTGATATTGAACATTGT+GGG | + | chr4_1:4347230-4347249 | None:intergenic | 25.0% |
| !! | ATATTATCACTGTTGACTAT+TGG | - | chr4_1:4347251-4347270 | Msa0530300:five_prime_UTR | 25.0% |
| ATTGGAATATAGATCGAAGA+AGG | - | chr4_1:4343007-4343026 | Msa0530300:three_prime_UTR | 30.0% | |
| AAATGAAAATGAGTACCAAC+TGG | + | chr4_1:4343275-4343294 | None:intergenic | 30.0% | |
| AGTTGTATCTGAGTTTAAGA+TGG | - | chr4_1:4343487-4343506 | Msa0530300:intron | 30.0% | |
| ! | TGAGTTTAAGATGGTTAGAT+TGG | - | chr4_1:4343496-4343515 | Msa0530300:intron | 30.0% |
| TTGAAGATGGTTAGATTAGA+TGG | - | chr4_1:4343925-4343944 | Msa0530300:intron | 30.0% | |
| TGAAGATGGTTAGATTAGAT+GGG | - | chr4_1:4343926-4343945 | Msa0530300:intron | 30.0% | |
| TACAATTTCAGAGTGCAAAT+TGG | + | chr4_1:4344059-4344078 | None:intergenic | 30.0% | |
| !! | AATTTGCACTCTGAAATTGT+AGG | - | chr4_1:4344058-4344077 | Msa0530300:CDS | 30.0% |
| !!! | GGTCCTTTTATTAACTTGTA+TGG | - | chr4_1:4344154-4344173 | Msa0530300:intron | 30.0% |
| TTGCCTATTTGCAAATTTCA+AGG | - | chr4_1:4344210-4344229 | Msa0530300:intron | 30.0% | |
| ! | GGTTTGTTTGTTTCTTATGA+AGG | - | chr4_1:4344378-4344397 | Msa0530300:intron | 30.0% |
| ! | ATATTTTGTGTTTGGTTGAG+CGG | - | chr4_1:4344458-4344477 | Msa0530300:intron | 30.0% |
| !! | CTCTTTTTATTTAGTTCAGG+AGG | - | chr4_1:4344497-4344516 | Msa0530300:intron | 30.0% |
| ATGAAAGAGATATTTGATGG+AGG | - | chr4_1:4344523-4344542 | Msa0530300:intron | 30.0% | |
| TGAAAGAGATATTTGATGGA+GGG | - | chr4_1:4344524-4344543 | Msa0530300:intron | 30.0% | |
| AGCTACAAGATTGAAAACAT+TGG | + | chr4_1:4344913-4344932 | None:intergenic | 30.0% | |
| ! | AATGTTTTCAATCTTGTAGC+TGG | - | chr4_1:4344912-4344931 | Msa0530300:intron | 30.0% |
| GAGGATGAAAGAAATAAAAG+GGG | + | chr4_1:4344967-4344986 | None:intergenic | 30.0% | |
| TATAAAATGTGCATGTGTGT+GGG | + | chr4_1:4345126-4345145 | None:intergenic | 30.0% | |
| ATATAAAATGTGCATGTGTG+TGG | + | chr4_1:4345127-4345146 | None:intergenic | 30.0% | |
| ! | ATAAAAAAGTGTGACCAAAG+AGG | + | chr4_1:4345155-4345174 | None:intergenic | 30.0% |
| ! | ACTATTTTGTGATATGGACA+AGG | - | chr4_1:4345225-4345244 | Msa0530300:intron | 30.0% |
| ! | CTATTTTGTGATATGGACAA+GGG | - | chr4_1:4345226-4345245 | Msa0530300:intron | 30.0% |
| AATGATCTGTTGACAAGTAA+TGG | - | chr4_1:4345274-4345293 | Msa0530300:intron | 30.0% | |
| !!! | CTTTTTTGTTCGAGAAATGA+TGG | - | chr4_1:4345449-4345468 | Msa0530300:intron | 30.0% |
| !! | TTAAAACTGTTTTTCCTAGC+AGG | - | chr4_1:4345613-4345632 | Msa0530300:intron | 30.0% |
| AACAAGGATTGTTGAACTAT+CGG | - | chr4_1:4345661-4345680 | Msa0530300:intron | 30.0% | |
| !!! | TTTTGAGACTTGTTTGTTTG+AGG | - | chr4_1:4345701-4345720 | Msa0530300:intron | 30.0% |
| TATTTGTGAAGATAATACCG+TGG | - | chr4_1:4345812-4345831 | Msa0530300:intron | 30.0% | |
| ATTTGTGAAGATAATACCGT+GGG | - | chr4_1:4345813-4345832 | Msa0530300:intron | 30.0% | |
| CCCAATTTCAACACTATTAA+TGG | - | chr4_1:4345961-4345980 | Msa0530300:intron | 30.0% | |
| TTAAGATACATACTCAACTG+AGG | + | chr4_1:4346023-4346042 | None:intergenic | 30.0% | |
| ACAGTGAACAAAAAAGGATA+AGG | + | chr4_1:4346256-4346275 | None:intergenic | 30.0% | |
| !!! | TATTGACTCCTTTTAACCAA+GGG | + | chr4_1:4346290-4346309 | None:intergenic | 30.0% |
| !!! | ATATTGACTCCTTTTAACCA+AGG | + | chr4_1:4346291-4346310 | None:intergenic | 30.0% |
| !! | ATTTTGACACCGTTCTTTAA+CGG | - | chr4_1:4346351-4346370 | Msa0530300:intron | 30.0% |
| CTTCATGATGATAATTTCAG+AGG | - | chr4_1:4346419-4346438 | Msa0530300:intron | 30.0% | |
| TTGCTTGTCTGAATATAACA+AGG | + | chr4_1:4346740-4346759 | None:intergenic | 30.0% | |
| ACAAGCAAATTAGTTAAGTG+TGG | - | chr4_1:4346752-4346771 | Msa0530300:intron | 30.0% | |
| CAAGCAAATTAGTTAAGTGT+GGG | - | chr4_1:4346753-4346772 | Msa0530300:intron | 30.0% | |
| ACAGATGAATAACTATGCTT+TGG | - | chr4_1:4346872-4346891 | Msa0530300:intron | 30.0% | |
| TGTGTAGAATGCCATAATAA+AGG | - | chr4_1:4346972-4346991 | Msa0530300:CDS | 30.0% | |
| ! | GTTCTCTTTTTATCACGAAA+AGG | - | chr4_1:4347023-4347042 | Msa0530300:CDS | 30.0% |
| GTAGAGACAACAAATAAAAG+CGG | + | chr4_1:4347201-4347220 | None:intergenic | 30.0% | |
| CAAACTGATATTGAACATTG+TGG | + | chr4_1:4347231-4347250 | None:intergenic | 30.0% | |
| TTTAGAGAAATTGGGGATTC+TGG | + | chr4_1:4342960-4342979 | None:intergenic | 35.0% | |
| GTTAGGGTTTAGAGAAATTG+GGG | + | chr4_1:4342967-4342986 | None:intergenic | 35.0% | |
| GGTTAGGGTTTAGAGAAATT+GGG | + | chr4_1:4342968-4342987 | None:intergenic | 35.0% | |
| CTTGGATGAAATTAGGGTTA+GGG | + | chr4_1:4342983-4343002 | None:intergenic | 35.0% | |
| ACTTGGATGAAATTAGGGTT+AGG | + | chr4_1:4342984-4343003 | None:intergenic | 35.0% | |
| AAGGAAAATCAACGAAGAAG+AGG | - | chr4_1:4343026-4343045 | Msa0530300:three_prime_UTR | 35.0% | |
| AATCAACGAAGAAGAGGAAA+AGG | - | chr4_1:4343032-4343051 | Msa0530300:three_prime_UTR | 35.0% | |
| GGAATAGTTGGAAAACGAAT+CGG | + | chr4_1:4343210-4343229 | None:intergenic | 35.0% | |
| TCAAAGAGAGAAGGAATAGT+TGG | + | chr4_1:4343222-4343241 | None:intergenic | 35.0% | |
| ! | AGTTGTATCTGAGTTGAAGA+TGG | - | chr4_1:4343912-4343931 | Msa0530300:intron | 35.0% |
| !! | ACTTGTATGGACTAGTTTGA+CGG | - | chr4_1:4344167-4344186 | Msa0530300:intron | 35.0% |
| CCACCTTGAAATTTGCAAAT+AGG | + | chr4_1:4344216-4344235 | None:intergenic | 35.0% | |
| CCTATTTGCAAATTTCAAGG+TGG | - | chr4_1:4344213-4344232 | Msa0530300:intron | 35.0% | |
| TTGTCTACTTGCAAAGTTCA+AGG | - | chr4_1:4344257-4344276 | Msa0530300:intron | 35.0% | |
| ! | TTGTTTCTTATGAAGGGAAG+AGG | - | chr4_1:4344385-4344404 | Msa0530300:intron | 35.0% |
| TGTTTCTTATGAAGGGAAGA+GGG | - | chr4_1:4344386-4344405 | Msa0530300:intron | 35.0% | |
| !!! | TGAGAGGTATTTTTGATGGA+GGG | - | chr4_1:4344409-4344428 | Msa0530300:intron | 35.0% |
| ATCCACATTGACATCAATCT+CGG | + | chr4_1:4344743-4344762 | None:intergenic | 35.0% | |
| !! | GGTGTTGGCAAATAAATGTT+TGG | - | chr4_1:4344775-4344794 | Msa0530300:CDS | 35.0% |
| TTTGTTGACCATTTGGACTT+TGG | - | chr4_1:4344811-4344830 | Msa0530300:CDS | 35.0% | |
| TGAAAACTCCAAAGTCCAAA+TGG | + | chr4_1:4344822-4344841 | None:intergenic | 35.0% | |
| ATAAAATGTGCATGTGTGTG+GGG | + | chr4_1:4345125-4345144 | None:intergenic | 35.0% | |
| GAAAAACTGTGCAGGTAAAT+TGG | - | chr4_1:4345347-4345366 | Msa0530300:intron | 35.0% | |
| CAGGTAAATTGGAGAATGAT+GGG | - | chr4_1:4345358-4345377 | Msa0530300:intron | 35.0% | |
| TCGAGAAATCAATCAGTGAA+CGG | - | chr4_1:4345526-4345545 | Msa0530300:CDS | 35.0% | |
| AATGTCCTTTGTGAAGAACA+AGG | - | chr4_1:4345645-4345664 | Msa0530300:intron | 35.0% | |
| ACAATCCTTGTTCTTCACAA+AGG | + | chr4_1:4345653-4345672 | None:intergenic | 35.0% | |
| TTTGTGAAGATAATACCGTG+GGG | - | chr4_1:4345814-4345833 | Msa0530300:intron | 35.0% | |
| CTAACTCATCCTTACAAAAC+TGG | + | chr4_1:4345940-4345959 | None:intergenic | 35.0% | |
| !! | CAGTTTTGTAAGGATGAGTT+AGG | - | chr4_1:4345938-4345957 | Msa0530300:intron | 35.0% |
| ATACTCAACTGAGGATAACA+GGG | + | chr4_1:4346014-4346033 | None:intergenic | 35.0% | |
| TCAGGAAAATTTGATGCTGA+AGG | - | chr4_1:4346064-4346083 | Msa0530300:intron | 35.0% | |
| ATTGTTCACCCTTGGTTAAA+AGG | - | chr4_1:4346279-4346298 | Msa0530300:intron | 35.0% | |
| ! | TTTTGACACCGTTCTTTAAC+GGG | - | chr4_1:4346352-4346371 | Msa0530300:intron | 35.0% |
| AAAGAGTGATGTGACTACAT+AGG | - | chr4_1:4346384-4346403 | Msa0530300:intron | 35.0% | |
| !! | CAGAGGTTCATATTGATTCT+CGG | - | chr4_1:4346436-4346455 | Msa0530300:intron | 35.0% |
| !! | GGTTCTGAAGAACATTTGAT+AGG | - | chr4_1:4346457-4346476 | Msa0530300:intron | 35.0% |
| AATGTACAAAAGCTGAAGCT+TGG | + | chr4_1:4346804-4346823 | None:intergenic | 35.0% | |
| ACTAGTTGCTGCCTTTATTA+TGG | + | chr4_1:4346986-4347005 | None:intergenic | 35.0% | |
| ! | GTTATAGTTTGTGTAGCTTC+TGG | - | chr4_1:4347055-4347074 | Msa0530300:CDS | 35.0% |
| !! | TTCTATCTATATCGGGTTGA+CGG | + | chr4_1:4347126-4347145 | None:intergenic | 35.0% |
| GAGAGAAGGGTTGAAAATTG+AGG | + | chr4_1:4342919-4342938 | None:intergenic | 40.0% | |
| ! | ATGGTGGAAAAGAGAGAGAA+GGG | + | chr4_1:4342932-4342951 | None:intergenic | 40.0% |
| GGGTTAGGGTTTAGAGAAAT+TGG | + | chr4_1:4342969-4342988 | None:intergenic | 40.0% | |
| TCGAATTCGATAGTCAGCAT+CGG | - | chr4_1:4343075-4343094 | Msa0530300:three_prime_UTR | 40.0% | |
| CAACGAAGCCTCTTAGATAA+GGG | + | chr4_1:4343171-4343190 | None:intergenic | 40.0% | |
| ACAACGAAGCCTCTTAGATA+AGG | + | chr4_1:4343172-4343191 | None:intergenic | 40.0% | |
| CCATATGAGGGAAGAGATTA+CGG | + | chr4_1:4343251-4343270 | None:intergenic | 40.0% | |
| TTGCTAATCAACGATGACGA+CGG | - | chr4_1:4343803-4343822 | Msa0530300:intron | 40.0% | |
| ! | ACGACGGTGATGTATTTTTC+TGG | - | chr4_1:4343819-4343838 | Msa0530300:intron | 40.0% |
| ! | CGACGGTGATGTATTTTTCT+GGG | - | chr4_1:4343820-4343839 | Msa0530300:intron | 40.0% |
| ! | TCTGGGATAGACGAATTTGT+CGG | - | chr4_1:4343837-4343856 | Msa0530300:intron | 40.0% |
| TTGCCTATTCGCAACTTTCA+GGG | + | chr4_1:4344100-4344119 | None:intergenic | 40.0% | |
| TTTGCCTATTCGCAACTTTC+AGG | + | chr4_1:4344101-4344120 | None:intergenic | 40.0% | |
| ! | GACCTGATTTTGAATGGTGT+CGG | - | chr4_1:4344124-4344143 | Msa0530300:CDS | 40.0% |
| ! | ACCTGATTTTGAATGGTGTC+GGG | - | chr4_1:4344125-4344144 | Msa0530300:CDS | 40.0% |
| CAAGGTGGCAATTCAAAATC+AGG | - | chr4_1:4344228-4344247 | Msa0530300:intron | 40.0% | |
| !!! | AGGGTGAGAGGTATTTTTGA+TGG | - | chr4_1:4344405-4344424 | Msa0530300:intron | 40.0% |
| !!! | GTGAGAGGTATTTTTGATGG+AGG | - | chr4_1:4344408-4344427 | Msa0530300:intron | 40.0% |
| !!! | GAGAGGTATTTTTGATGGAG+GGG | - | chr4_1:4344410-4344429 | Msa0530300:intron | 40.0% |
| !!! | AGAGGTATTTTTGATGGAGG+GGG | - | chr4_1:4344411-4344430 | Msa0530300:intron | 40.0% |
| CTAGATCGTTGTCACATTCT+TGG | + | chr4_1:4344648-4344667 | None:intergenic | 40.0% | |
| AGCCTGAATGAGCTTTACTT+GGG | - | chr4_1:4344682-4344701 | Msa0530300:CDS | 40.0% | |
| ATCCGAGATTGATGTCAATG+TGG | - | chr4_1:4344738-4344757 | Msa0530300:CDS | 40.0% | |
| ATTGATGTCAATGTGGATGC+AGG | - | chr4_1:4344745-4344764 | Msa0530300:CDS | 40.0% | |
| AATGTGGATGCAGGTATGAT+TGG | - | chr4_1:4344754-4344773 | Msa0530300:CDS | 40.0% | |
| ! | GGATGTGTTTGTTGACCATT+TGG | - | chr4_1:4344804-4344823 | Msa0530300:CDS | 40.0% |
| CGAAACAATGGTCTCAGATT+TGG | - | chr4_1:4344859-4344878 | Msa0530300:intron | 40.0% | |
| ! | GGTCTCAGATTTGGTAGTAT+TGG | - | chr4_1:4344868-4344887 | Msa0530300:intron | 40.0% |
| ! | GTTTTCAATCTTGTAGCTGG+AGG | - | chr4_1:4344915-4344934 | Msa0530300:intron | 40.0% |
| GAGAGAGATAGGTTACTAAG+AGG | + | chr4_1:4344986-4345005 | None:intergenic | 40.0% | |
| TAAAATGTGCATGTGTGTGG+GGG | + | chr4_1:4345124-4345143 | None:intergenic | 40.0% | |
| ACACTAGTAATGTGCTCATG+AGG | + | chr4_1:4345202-4345221 | None:intergenic | 40.0% | |
| CGTGTCAAGTGTCAATATCT+CGG | + | chr4_1:4345322-4345341 | None:intergenic | 40.0% | |
| ACGTGTTTGAAAAACTGTGC+AGG | - | chr4_1:4345339-4345358 | Msa0530300:intron | 40.0% | |
| GCAGGTAAATTGGAGAATGA+TGG | - | chr4_1:4345357-4345376 | Msa0530300:intron | 40.0% | |
| CGAGAAATCAATCAGTGAAC+GGG | - | chr4_1:4345527-4345546 | Msa0530300:CDS | 40.0% | |
| AGGATTGTTGAACTATCGGT+AGG | - | chr4_1:4345665-4345684 | Msa0530300:intron | 40.0% | |
| AAGAATGTACTGTTGAGTGC+TGG | - | chr4_1:4345724-4345743 | Msa0530300:intron | 40.0% | |
| ACCTCACATCAGATAAGAGA+TGG | - | chr4_1:4345870-4345889 | Msa0530300:intron | 40.0% | |
| CATACTCAACTGAGGATAAC+AGG | + | chr4_1:4346015-4346034 | None:intergenic | 40.0% | |
| !! | GCAAATCGAAGTGCTGATTA+AGG | - | chr4_1:4346088-4346107 | Msa0530300:intron | 40.0% |
| ! | ATTGCAGCATTTGAAGCAGT+TGG | - | chr4_1:4346184-4346203 | Msa0530300:intron | 40.0% |
| ACTGTCAAATTGTTCACCCT+TGG | - | chr4_1:4346271-4346290 | Msa0530300:intron | 40.0% | |
| CCTTCTATCCCGTTAAAGAA+CGG | + | chr4_1:4346363-4346382 | None:intergenic | 40.0% | |
| CGTTCTTTAACGGGATAGAA+GGG | - | chr4_1:4346361-4346380 | Msa0530300:intron | 40.0% | |
| ATTCAGAGAAGACCAGCAAA+TGG | + | chr4_1:4346604-4346623 | None:intergenic | 40.0% | |
| TTCTGCTTTGGTTGAAAACG+AGG | - | chr4_1:4346649-4346668 | Msa0530300:intron | 40.0% | |
| CAGATGCAATAACTGAGCAT+TGG | + | chr4_1:4346680-4346699 | None:intergenic | 40.0% | |
| ! | TTTGGCAATGCATTTGAAGC+AGG | - | chr4_1:4346890-4346909 | Msa0530300:intron | 40.0% |
| ! | AACAGAGCAACGGATTTCAA+GGG | - | chr4_1:4346916-4346935 | Msa0530300:intron | 40.0% |
| !! | TCTATCTATATCGGGTTGAC+GGG | + | chr4_1:4347125-4347144 | None:intergenic | 40.0% |
| !! | GATGGTGGAAAAGAGAGAGA+AGG | + | chr4_1:4342933-4342952 | None:intergenic | 45.0% |
| ! | ATTGGGGATTCTGGTGATGA+TGG | + | chr4_1:4342951-4342970 | None:intergenic | 45.0% |
| CAACGAAGAAGAGGAAAAGG+AGG | - | chr4_1:4343035-4343054 | Msa0530300:three_prime_UTR | 45.0% | |
| GAGGAAAAGGAGGAGGAAAT+TGG | - | chr4_1:4343045-4343064 | Msa0530300:three_prime_UTR | 45.0% | |
| TTAGATAAGGGAGGAGAAGG+AGG | + | chr4_1:4343159-4343178 | None:intergenic | 45.0% | |
| CTCTTAGATAAGGGAGGAGA+AGG | + | chr4_1:4343162-4343181 | None:intergenic | 45.0% | |
| CTTCTCCTCCCTTATCTAAG+AGG | - | chr4_1:4343160-4343179 | Msa0530300:three_prime_UTR | 45.0% | |
| ACGAATCGGAGAAGTAGAAG+AGG | + | chr4_1:4343196-4343215 | None:intergenic | 45.0% | |
| CCGTAATCTCTTCCCTCATA+TGG | - | chr4_1:4343248-4343267 | Msa0530300:three_prime_UTR | 45.0% | |
| GTACCAACTGGTCCATATGA+GGG | + | chr4_1:4343263-4343282 | None:intergenic | 45.0% | |
| AGTACCAACTGGTCCATATG+AGG | + | chr4_1:4343264-4343283 | None:intergenic | 45.0% | |
| !! | CACTCTGAAATTGTAGGCGT+CGG | - | chr4_1:4344064-4344083 | Msa0530300:CDS | 45.0% |
| ! | GCAACTTTCAGGGGTGTAAA+TGG | + | chr4_1:4344090-4344109 | None:intergenic | 45.0% |
| TGCCTATTCGCAACTTTCAG+GGG | + | chr4_1:4344099-4344118 | None:intergenic | 45.0% | |
| ! | TTGAATGGTGTCGGGCAATT+TGG | - | chr4_1:4344133-4344152 | Msa0530300:CDS | 45.0% |
| AATTCGTCCCCTGAAGTTGT+AGG | + | chr4_1:4344298-4344317 | None:intergenic | 45.0% | |
| TACAACTTCAGGGGACGAAT+TGG | - | chr4_1:4344297-4344316 | Msa0530300:intron | 45.0% | |
| ACAACTTCAGGGGACGAATT+GGG | - | chr4_1:4344298-4344317 | Msa0530300:intron | 45.0% | |
| GAGCCTGAATGAGCTTTACT+TGG | - | chr4_1:4344681-4344700 | Msa0530300:CDS | 45.0% | |
| CTCCCAAGTAAAGCTCATTC+AGG | + | chr4_1:4344687-4344706 | None:intergenic | 45.0% | |
| GATGCAGGTATGATTGGTGT+TGG | - | chr4_1:4344760-4344779 | Msa0530300:CDS | 45.0% | |
| AATCAATCAGTGAACGGGCA+AGG | - | chr4_1:4345532-4345551 | Msa0530300:CDS | 45.0% | |
| ATCAATCAGTGAACGGGCAA+GGG | - | chr4_1:4345533-4345552 | Msa0530300:CDS | 45.0% | |
| ACATTCACTTGTGACCTGCT+AGG | + | chr4_1:4345630-4345649 | None:intergenic | 45.0% | |
| !! | GTTGAGTGCTGGTTTAGTTG+AGG | - | chr4_1:4345735-4345754 | Msa0530300:intron | 45.0% |
| AAGATAATACCGTGGGGAGA+GGG | - | chr4_1:4345820-4345839 | Msa0530300:intron | 45.0% | |
| CTCTTATCTGATGTGAGGTG+AGG | + | chr4_1:4345869-4345888 | None:intergenic | 45.0% | |
| GCCATCTCTTATCTGATGTG+AGG | + | chr4_1:4345874-4345893 | None:intergenic | 45.0% | |
| !! | CCTTACAAAACTGGCTTGTG+AGG | + | chr4_1:4345931-4345950 | None:intergenic | 45.0% |
| !! | CCTCACAAGCCAGTTTTGTA+AGG | - | chr4_1:4345928-4345947 | Msa0530300:intron | 45.0% |
| CCGTTCTTTAACGGGATAGA+AGG | - | chr4_1:4346360-4346379 | Msa0530300:intron | 45.0% | |
| GTCGTGTATTTCTCTCCCTT+CGG | - | chr4_1:4346514-4346533 | Msa0530300:intron | 45.0% | |
| TCGTGTATTTCTCTCCCTTC+GGG | - | chr4_1:4346515-4346534 | Msa0530300:intron | 45.0% | |
| AGTGGGAAGTTTCCATTTGC+TGG | - | chr4_1:4346589-4346608 | Msa0530300:intron | 45.0% | |
| ! | CTGAATCTCCTTCCTTTTGC+CGG | - | chr4_1:4346618-4346637 | Msa0530300:intron | 45.0% |
| ! | TGAATCTCCTTCCTTTTGCC+GGG | - | chr4_1:4346619-4346638 | Msa0530300:intron | 45.0% |
| CTTTGGTTGAAAACGAGGAG+AGG | - | chr4_1:4346654-4346673 | Msa0530300:intron | 45.0% | |
| ! | CAACAGAGCAACGGATTTCA+AGG | - | chr4_1:4346915-4346934 | Msa0530300:intron | 45.0% |
| TGACGGGATAGAATCACTCT+TGG | + | chr4_1:4347109-4347128 | None:intergenic | 45.0% | |
| !!! | TTTTACATATAAAATAAATT+TGG | - | chr4_1:4346712-4346731 | Msa0530300:intron | 5.0% |
| CGAAGAAGAGGAAAAGGAGG+AGG | - | chr4_1:4343038-4343057 | Msa0530300:three_prime_UTR | 50.0% | |
| CGAAGCCTCTTAGATAAGGG+AGG | + | chr4_1:4343168-4343187 | None:intergenic | 50.0% | |
| CGGAGCTGATCAAAGAGAGA+AGG | + | chr4_1:4343231-4343250 | None:intergenic | 50.0% | |
| CTTCCCTCATATGGACCAGT+TGG | - | chr4_1:4343257-4343276 | Msa0530300:exon | 50.0% | |
| CACCCCTGAAAGTTGCGAAT+AGG | - | chr4_1:4344094-4344113 | Msa0530300:CDS | 50.0% | |
| GCCCGACACCATTCAAAATC+AGG | + | chr4_1:4344129-4344148 | None:intergenic | 50.0% | |
| CAACTTCAGGGGACGAATTG+GGG | - | chr4_1:4344299-4344318 | Msa0530300:intron | 50.0% | |
| TATGAAGGGAAGAGGGTGAG+AGG | - | chr4_1:4344393-4344412 | Msa0530300:intron | 50.0% | |
| ! | TTTTGATGGAGGGGGTGAGT+AGG | - | chr4_1:4344419-4344438 | Msa0530300:intron | 50.0% |
| TTTACTTGGGAGCTGCAGGT+GGG | - | chr4_1:4344695-4344714 | Msa0530300:CDS | 50.0% | |
| GCAGAGAGAGAGAGAGAGAT+AGG | + | chr4_1:4344997-4345016 | None:intergenic | 50.0% | |
| GGACAAGGGCTGTGAAGTAT+AGG | - | chr4_1:4345240-4345259 | Msa0530300:intron | 50.0% | |
| TTGAACAGCCTTCCTGCAGA+TGG | - | chr4_1:4345411-4345430 | Msa0530300:intron | 50.0% | |
| ! | GGCTCTAGCATCATCAACAC+TGG | + | chr4_1:4345481-4345500 | None:intergenic | 50.0% |
| GGCAACAGATGCTCTTCAGA+AGG | - | chr4_1:4345560-4345579 | Msa0530300:CDS | 50.0% | |
| GAAGATAATACCGTGGGGAG+AGG | - | chr4_1:4345819-4345838 | Msa0530300:intron | 50.0% | |
| !! | CAAAACTGGCTTGTGAGGTG+AGG | + | chr4_1:4345926-4345945 | None:intergenic | 50.0% |
| AATCAGAAAGACGCTCGTGC+TGG | + | chr4_1:4346145-4346164 | None:intergenic | 50.0% | |
| ! | CAAGAGTTCTGATCTGCTCC+TGG | + | chr4_1:4346220-4346239 | None:intergenic | 50.0% |
| GGAGCAGATCAGAACTCTTG+AGG | - | chr4_1:4346220-4346239 | Msa0530300:intron | 50.0% | |
| CGTGTATTTCTCTCCCTTCG+GGG | - | chr4_1:4346516-4346535 | Msa0530300:intron | 50.0% | |
| AAATAACTCCCAGCCCCGAA+GGG | + | chr4_1:4346532-4346551 | None:intergenic | 50.0% | |
| AAAATAACTCCCAGCCCCGA+AGG | + | chr4_1:4346533-4346552 | None:intergenic | 50.0% | |
| ! | TTCGGGGCTGGGAGTTATTT+TGG | - | chr4_1:4346532-4346551 | Msa0530300:intron | 50.0% |
| AGAATTGAGTGCCCGGCAAA+AGG | + | chr4_1:4346633-4346652 | None:intergenic | 50.0% | |
| CCAAAGCAGAATTGAGTGCC+CGG | + | chr4_1:4346640-4346659 | None:intergenic | 50.0% | |
| AAGCAGGCTCAACAGAGCAA+CGG | - | chr4_1:4346906-4346925 | Msa0530300:intron | 50.0% | |
| !! | GGGGATTCTGGTGATGATGG+TGG | + | chr4_1:4342948-4342967 | None:intergenic | 55.0% |
| ACGATGTCTGCTGCTGTGTG+CGG | - | chr4_1:4343102-4343121 | Msa0530300:three_prime_UTR | 55.0% | |
| TCCCCTGAAGTTGTAGGCGT+CGG | + | chr4_1:4344292-4344311 | None:intergenic | 55.0% | |
| GAGCTTTACTTGGGAGCTGC+AGG | - | chr4_1:4344691-4344710 | Msa0530300:CDS | 55.0% | |
| CTTTACTTGGGAGCTGCAGG+TGG | - | chr4_1:4344694-4344713 | Msa0530300:CDS | 55.0% | |
| ATTCGGCTCCATCTGCAGGA+AGG | + | chr4_1:4345422-4345441 | None:intergenic | 55.0% | |
| TTCCTGCAGATGGAGCCGAA+TGG | - | chr4_1:4345421-4345440 | Msa0530300:intron | 55.0% | |
| ATCCATTCGGCTCCATCTGC+AGG | + | chr4_1:4345426-4345445 | None:intergenic | 55.0% | |
| CTCCAGCATTCTAGCAGCAC+GGG | + | chr4_1:4345502-4345521 | None:intergenic | 55.0% | |
| CCTCCAGCATTCTAGCAGCA+CGG | + | chr4_1:4345503-4345522 | None:intergenic | 55.0% | |
| ATAATACCGTGGGGAGAGGG+TGG | - | chr4_1:4345823-4345842 | Msa0530300:intron | 55.0% | |
| ! | TTTTCTCCACCCTCTCCCCA+CGG | + | chr4_1:4345832-4345851 | None:intergenic | 55.0% |
| GCAGTTGGCGTCTCAATACC+AGG | - | chr4_1:4346199-4346218 | Msa0530300:intron | 55.0% | |
| TATTTCTCTCCCTTCGGGGC+TGG | - | chr4_1:4346520-4346539 | Msa0530300:intron | 55.0% | |
| ATTTCTCTCCCTTCGGGGCT+GGG | - | chr4_1:4346521-4346540 | Msa0530300:intron | 55.0% | |
| TTGAGTGCCCGGCAAAAGGA+AGG | + | chr4_1:4346629-4346648 | None:intergenic | 55.0% | |
| CCGGGCACTCAATTCTGCTT+TGG | - | chr4_1:4346637-4346656 | Msa0530300:intron | 55.0% | |
| TGCCCGACGCCTACAACTTC+AGG | - | chr4_1:4344286-4344305 | Msa0530300:intron | 60.0% | |
| GCCCGACGCCTACAACTTCA+GGG | - | chr4_1:4344287-4344306 | Msa0530300:intron | 60.0% | |
| CCCCTGAAGTTGTAGGCGTC+GGG | + | chr4_1:4344291-4344310 | None:intergenic | 60.0% | |
| CCCGACGCCTACAACTTCAG+GGG | - | chr4_1:4344288-4344307 | Msa0530300:intron | 60.0% | |
| GGAGCTGCAGGTGGGAATTC+TGG | - | chr4_1:4344703-4344722 | Msa0530300:CDS | 60.0% | |
| TGGGGGTGAGAGAGAGTCGA+TGG | + | chr4_1:4345107-4345126 | None:intergenic | 60.0% | |
| ! | AGCCCGTGCTGCTAGAATGC+TGG | - | chr4_1:4345497-4345516 | Msa0530300:CDS | 60.0% |
| ! | CCGTGCTGCTAGAATGCTGG+AGG | - | chr4_1:4345500-4345519 | Msa0530300:CDS | 60.0% |
| CAGTGAACGGGCAAGGGCTG+AGG | - | chr4_1:4345539-4345558 | Msa0530300:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 4342906 | 4347331 | 4342906 | ID=Msa0530300;Name=Msa0530300 |
| chr4_1 | mRNA | 4342906 | 4347331 | 4342906 | ID=Msa0530300-mRNA-1;Parent=Msa0530300;Name=Msa0530300-mRNA-1;_AED=0.07;_eAED=0.07;_QI=199|1|1|1|1|1|5|369|264 |
| chr4_1 | exon | 4342906 | 4343361 | 4342906 | ID=Msa0530300-mRNA-1:exon:1311;Parent=Msa0530300-mRNA-1 |
| chr4_1 | exon | 4343996 | 4344169 | 4343996 | ID=Msa0530300-mRNA-1:exon:1310;Parent=Msa0530300-mRNA-1 |
| chr4_1 | exon | 4344656 | 4344876 | 4344656 | ID=Msa0530300-mRNA-1:exon:1309;Parent=Msa0530300-mRNA-1 |
| chr4_1 | exon | 4345471 | 4345609 | 4345471 | ID=Msa0530300-mRNA-1:exon:1308;Parent=Msa0530300-mRNA-1 |
| chr4_1 | exon | 4346959 | 4347331 | 4346959 | ID=Msa0530300-mRNA-1:exon:1307;Parent=Msa0530300-mRNA-1 |
| chr4_1 | five_prime_UTR | 4347133 | 4347331 | 4347133 | ID=Msa0530300-mRNA-1:five_prime_utr;Parent=Msa0530300-mRNA-1 |
| chr4_1 | CDS | 4346959 | 4347132 | 4346959 | ID=Msa0530300-mRNA-1:cds;Parent=Msa0530300-mRNA-1 |
| chr4_1 | CDS | 4345471 | 4345609 | 4345471 | ID=Msa0530300-mRNA-1:cds;Parent=Msa0530300-mRNA-1 |
| chr4_1 | CDS | 4344656 | 4344876 | 4344656 | ID=Msa0530300-mRNA-1:cds;Parent=Msa0530300-mRNA-1 |
| chr4_1 | CDS | 4343996 | 4344169 | 4343996 | ID=Msa0530300-mRNA-1:cds;Parent=Msa0530300-mRNA-1 |
| chr4_1 | CDS | 4343275 | 4343361 | 4343275 | ID=Msa0530300-mRNA-1:cds;Parent=Msa0530300-mRNA-1 |
| chr4_1 | three_prime_UTR | 4342906 | 4343274 | 4342906 | ID=Msa0530300-mRNA-1:three_prime_utr;Parent=Msa0530300-mRNA-1 |
| Gene Sequence |
| Protein sequence |
