AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0533370

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0533370 MtrunA17_Chr4g0006421 71.264 348 65 7 1 321 1 340 1.34e-144 433
Msa0533370 MtrunA17_Chr4g0006861 67.236 351 77 6 1 321 1 343 1.94e-135 409
Msa0533370 MtrunA17_Chr4g0006941 53.988 326 108 10 1 321 13 301 6.38e-83 270
Msa0533370 MtrunA17_Chr4g0006951 64.171 187 52 6 1 182 1 177 1.97e-66 209
Msa0533370 MtrunA17_Chr4g0006881 70.629 143 27 4 1 133 1 138 5.12e-56 179
Msa0533370 MtrunA17_Chr4g0006911 66.912 136 34 5 1 133 1 128 5.39e-49 160
Msa0533370 MtrunA17_Chr2g0283921 33.654 312 177 10 24 321 29 324 6.27e-26 108
Msa0533370 MtrunA17_Chr8g0372861 33.758 314 176 9 24 321 27 324 1.72e-24 104
Msa0533370 MtrunA17_Chr7g0241491 36.441 236 129 10 101 322 242 470 1.53e-17 83.6
Msa0533370 MtrunA17_Chr7g0241491 29.444 360 167 15 49 325 19 374 3.13e-12 67.8
Msa0533370 MtrunA17_Chr5g0429421 30.645 310 175 13 25 322 33 314 4.90e-14 73.2
Msa0533370 MtrunA17_Chr7g0218991 33.333 210 129 6 113 321 159 358 2.69e-13 70.9
Msa0533370 MtrunA17_Chr7g0216261 33.014 209 134 5 114 321 25 228 4.83e-13 69.7
Msa0533370 MtrunA17_Chr7g0217081 34.043 188 121 3 113 300 207 391 6.01e-13 69.7
Msa0533370 MtrunA17_Chr7g0217081 33.488 215 137 5 113 326 183 392 1.01e-11 65.9
Msa0533370 MtrunA17_Chr7g0217081 28.618 304 159 8 65 321 47 339 3.56e-11 64.3
Msa0533370 MtrunA17_Chr3g0144581 34.375 224 139 5 102 325 119 334 1.63e-12 68.6
Msa0533370 MtrunA17_Chr2g0293591 33.175 211 127 5 115 321 246 446 2.00e-12 68.2
Msa0533370 MtrunA17_Chr7g0215631 29.371 286 170 9 48 321 37 302 3.03e-12 67.4
Msa0533370 MtrunA17_Chr6g0455731 28.969 359 175 13 23 321 29 367 3.07e-12 67.4
Msa0533370 MtrunA17_Chr5g0446891 36.019 211 130 3 115 325 297 502 4.27e-12 67.0
Msa0533370 MtrunA17_Chr6g0465181 30.063 316 193 11 25 326 39 340 4.38e-12 67.0
Msa0533370 MtrunA17_Chr7g0215061 29.965 287 172 9 48 321 49 319 4.64e-12 67.0
Msa0533370 MtrunA17_Chr8g0357151 32.877 219 129 5 112 326 411 615 5.62e-12 67.0
Msa0533370 MtrunA17_Chr8g0357191 33.054 239 124 7 113 326 304 531 6.25e-12 66.6
Msa0533370 MtrunA17_Chr7g0219371 37.037 162 98 3 161 321 227 385 7.55e-12 66.2
Msa0533370 MtrunA17_Chr7g0264271 30.806 211 142 4 109 319 173 379 1.28e-11 65.5
Msa0533370 MtrunA17_Chr1g0203251 33.505 194 118 4 114 303 507 693 1.45e-11 65.5
Msa0533370 MtrunA17_Chr2g0316441 29.078 282 122 12 51 300 48 283 2.25e-11 65.1
Msa0533370 MtrunA17_Chr4g0013511 32.353 204 110 5 118 321 103 278 3.17e-11 63.2
Msa0533370 MtrunA17_Chr6g0454621 31.884 276 123 8 113 326 151 423 4.08e-11 64.3
Msa0533370 MtrunA17_Chr2g0314021 28.223 287 182 10 50 319 47 326 4.21e-11 64.3
Msa0533370 MtrunA17_Chr6g0454661 35.028 177 93 3 113 268 151 326 4.55e-11 63.9
Msa0533370 MtrunA17_Chr6g0455771 26.608 342 173 11 25 309 31 351 6.84e-11 63.2
Msa0533370 MtrunA17_Chr8g0363371 33.149 181 118 3 118 298 211 388 7.17e-11 63.2
Msa0533370 MtrunA17_Chr6g0455781 27.679 336 177 12 25 309 31 351 7.74e-11 63.2
Msa0533370 MtrunA17_Chr6g0455671 29.096 354 173 16 21 321 27 355 8.31e-11 63.2
Msa0533370 MtrunA17_Chr7g0232461 32.804 189 124 3 112 300 422 607 8.72e-11 63.2
Msa0533370 MtrunA17_Chr5g0440151 32.864 213 129 6 113 321 295 497 9.03e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0533370 AT1G58190.2 35.608 337 167 7 13 319 16 332 8.20e-42 155
Msa0533370 AT1G74170.2 34.783 322 167 11 10 319 11 301 8.58e-36 137
Msa0533370 AT1G74170.2 36.017 236 127 9 106 321 182 413 1.14e-11 66.2
Msa0533370 AT2G25470.2 36.111 324 157 13 10 321 15 300 2.54e-35 136
Msa0533370 AT2G25470.3 36.111 324 157 13 10 321 15 300 3.18e-35 136
Msa0533370 AT2G25470.1 34.483 319 161 11 14 321 1 282 2.60e-34 133
Msa0533370 AT1G58190.1 34.615 312 177 7 13 318 16 306 9.09e-34 132
Msa0533370 AT5G49290.3 33.436 326 182 13 10 319 11 317 9.61e-31 122
Msa0533370 AT1G74190.1 35.152 330 179 11 10 318 11 326 9.82e-31 123
Msa0533370 AT5G49290.2 33.436 326 182 13 10 319 11 317 9.85e-31 123
Msa0533370 AT5G49290.4 33.540 322 179 13 14 319 1 303 3.02e-30 121
Msa0533370 AT5G49290.6 33.540 322 179 13 14 319 1 303 3.02e-30 121
Msa0533370 AT5G49290.8 33.540 322 179 13 14 319 1 303 3.02e-30 121
Msa0533370 AT1G58190.3 33.115 305 177 8 20 318 32 315 9.59e-29 117
Msa0533370 AT5G49290.1 33.333 309 162 11 14 289 1 298 1.20e-28 117
Msa0533370 AT3G53240.2 34.603 315 169 14 21 318 2 296 9.94e-27 111
Msa0533370 AT1G74180.1 35.220 318 161 10 13 321 15 296 1.15e-25 108
Msa0533370 AT1G74180.2 35.220 318 161 10 13 321 1 282 1.47e-25 107
Msa0533370 AT1G07390.4 29.107 347 210 5 11 324 24 367 5.15e-25 106
Msa0533370 AT1G07390.5 29.107 347 210 5 11 324 24 367 5.99e-25 106
Msa0533370 AT1G54470.1 32.812 320 188 11 10 318 110 413 9.04e-24 101
Msa0533370 AT5G49290.5 33.692 279 154 11 56 319 13 275 1.26e-23 102
Msa0533370 AT1G74170.1 35.294 255 128 7 75 319 6 233 2.83e-23 101
Msa0533370 AT1G74170.1 36.017 236 127 9 106 321 114 345 1.12e-11 66.2
Msa0533370 AT5G49290.7 33.459 266 137 9 56 289 13 270 5.44e-22 97.4
Msa0533370 AT1G07390.3 30.000 300 177 4 31 324 1 273 1.14e-20 93.6
Msa0533370 AT3G53240.1 34.559 272 146 12 64 318 4 260 1.03e-19 90.5
Msa0533370 AT3G53240.3 34.559 272 146 12 64 318 4 260 1.03e-19 90.5
Msa0533370 AT1G07390.1 29.052 327 196 5 31 324 1 324 1.51e-19 90.1
Msa0533370 AT3G11080.2 29.878 328 187 11 25 321 38 353 1.16e-14 75.5
Msa0533370 AT3G11080.1 29.878 328 187 11 25 321 38 353 1.16e-14 75.5
Msa0533370 AT4G04220.1 30.769 299 166 8 25 294 24 310 1.81e-14 74.7
Msa0533370 AT2G32680.1 34.749 259 148 10 73 327 68 309 2.98e-12 68.2
Msa0533370 AT3G25010.1 33.971 209 124 5 115 317 149 349 3.90e-12 67.8
Msa0533370 AT3G11010.3 29.155 343 187 11 25 319 38 372 4.26e-12 67.4
Msa0533370 AT3G25010.2 33.971 209 124 5 115 317 180 380 4.68e-12 67.4
Msa0533370 AT3G11010.5 30.392 306 161 10 58 319 12 309 6.62e-12 67.0
Msa0533370 AT5G40170.1 31.229 301 165 13 33 318 39 312 8.35e-12 66.6
Msa0533370 AT2G15080.1 29.231 325 188 12 25 321 30 340 9.67e-12 66.6
Msa0533370 AT2G15080.2 29.231 325 188 12 25 321 30 340 9.67e-12 66.6
Msa0533370 AT3G24982.1 33.014 209 126 5 115 317 180 380 1.53e-11 65.9
Msa0533370 AT3G56370.1 34.524 168 107 3 160 327 374 538 3.26e-11 64.7
Msa0533370 AT3G23010.2 28.774 212 116 5 137 319 42 247 4.14e-11 64.3
Msa0533370 AT3G05650.1 29.052 327 202 11 3 317 11 319 4.22e-11 64.3
Msa0533370 AT3G23010.1 28.774 212 116 5 137 319 42 247 4.64e-11 64.3
Msa0533370 AT3G11010.2 28.142 366 185 12 25 319 38 396 5.79e-11 63.9
Msa0533370 AT5G20480.1 31.401 207 139 3 115 321 99 302 7.32e-11 63.9
Msa0533370 AT5G20480.2 31.401 207 139 3 115 321 99 302 7.32e-11 63.9
Msa0533370 AT3G11010.1 29.179 329 159 11 58 319 12 333 9.15e-11 63.5

Find 193 sgRNAs with CRISPR-Local

Find 610 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTGACTTCAATTGAAATTT+AGG 0.134460 4_1:-8266251 None:intergenic
GTGTCTTATAACAACCTTTC+TGG 0.142165 4_1:+8267775 Msa0533370:three_prime_UTR
AGCAAACTGTCTTAAATTAA+AGG 0.152736 4_1:-8268185 None:intergenic
CCCTACAAGACTTACTATTT+TGG 0.163925 4_1:+8257242 Msa0533370:CDS
TCATTCCAAATGACATATTT+TGG 0.176609 4_1:-8267270 None:intergenic
TTTGAATTCCCAATGGAATT+TGG 0.189188 4_1:+8267331 Msa0533370:three_prime_UTR
TTTGGAGATCTCTTGGATTT+TGG 0.190060 4_1:+8267349 Msa0533370:three_prime_UTR
TCTTAGAACTTTCCCATAAT+TGG 0.196784 4_1:+8259990 Msa0533370:CDS
TTGGAGACATTAGATCTTTC+AGG 0.199164 4_1:+8259572 Msa0533370:CDS
CTTTCTCAAAACAAGTTAAA+TGG 0.207551 4_1:+8266941 Msa0533370:three_prime_UTR
ATAAGTCAAGACTCTCTATT+TGG 0.215048 4_1:-8267684 None:intergenic
ATTGACAAGATGCTTCTATT+TGG 0.221833 4_1:-8258257 None:intergenic
TTTATATTTAGTGATGTTAA+TGG 0.226736 4_1:+8257012 Msa0533370:CDS
AATTGCTTTCTCTCTACTTT+AGG 0.233711 4_1:+8260088 Msa0533370:CDS
TGTTGCAGTTTAGCCAATTA+TGG 0.237442 4_1:-8260003 None:intergenic
CATGTCCAGACTTCGAATTT+TGG 0.255080 4_1:+8266916 Msa0533370:three_prime_UTR
GAACATAATGGATGTAAATT+TGG 0.259544 4_1:+8267378 Msa0533370:three_prime_UTR
TTTGCCTGTGATTGAGTTAC+TGG 0.260339 4_1:-8266801 None:intergenic
TCAGTGCCATCTGAACTTTC+TGG 0.260934 4_1:+8267040 Msa0533370:three_prime_UTR
GAGATAGCAATTGTTGTTCT+TGG 0.265382 4_1:+8257170 Msa0533370:CDS
CTCAATAATAACAACTTTAG+TGG 0.269758 4_1:+8266725 Msa0533370:three_prime_UTR
CAATCTGTGGCCAGTTGTTT+AGG 0.283590 4_1:-8266611 None:intergenic
TTGCATGTAATTTCCGTAGA+TGG 0.294759 4_1:-8266117 None:intergenic
CACAACACGAAGGAGATTAT+TGG 0.296660 4_1:+8257107 Msa0533370:CDS
TTTAACTGACACAATTGAAT+TGG 0.301465 4_1:-8267187 None:intergenic
CACATTGAAGGTTGATAAAA+AGG 0.302668 4_1:-8267755 None:intergenic
GGTACCATCCCTTCTCAAAT+TGG 0.302828 4_1:+8267580 Msa0533370:three_prime_UTR
TTGGGTGGTAATCAATTTAC+TGG 0.305300 4_1:+8260228 Msa0533370:CDS
TGCTTCCAAAATATGTCATT+TGG 0.305694 4_1:+8267265 Msa0533370:three_prime_UTR
TGCATGGATTCACATCATTA+AGG 0.305907 4_1:+8260038 Msa0533370:CDS
ATTTAGTCGGCTAGAACTAT+TGG 0.317235 4_1:+8260203 Msa0533370:CDS
TTGAGCTGCAATAAAGGATT+AGG 0.317557 4_1:+8266764 Msa0533370:three_prime_UTR
GTTCAAACCCACTGGACATT+TGG 0.330970 4_1:-8266970 None:intergenic
TTCATATCAATATAATTTGA+TGG 0.331530 4_1:+8266331 Msa0533370:three_prime_UTR
GCAAGATGCTACTATTTAGA+TGG 0.333368 4_1:-8259598 None:intergenic
ACTCTCTATTTGGGTAAGAT+TGG 0.349112 4_1:-8267674 None:intergenic
TGTGATTGAGTTACTGGATA+TGG 0.351848 4_1:-8266795 None:intergenic
ATTGAAGGATTTGGTAGAAC+TGG 0.354399 4_1:+8265954 Msa0533370:CDS
ACTCGACACGTTCACACTTT+CGG 0.355027 4_1:-8267882 None:intergenic
TTATATTTAGTGATGTTAAT+GGG 0.359472 4_1:+8257013 Msa0533370:CDS
TAATGATGGCATACAACATT+TGG 0.362705 4_1:+8266409 Msa0533370:three_prime_UTR
TCCGTTGCATTACAAAATTT+AGG 0.364526 4_1:-8266686 None:intergenic
ATCTTACATAACAATATTGT+TGG 0.364957 4_1:+8267987 Msa0533370:three_prime_UTR
GGCAAAATTCCTAGTTCAAT+CGG 0.372600 4_1:+8266818 Msa0533370:three_prime_UTR
TCAATATAATTTGATGGTTG+TGG 0.378373 4_1:+8266337 Msa0533370:three_prime_UTR
ATTCCGTGAAAAGTTCAAAA+AGG 0.379396 4_1:-8266498 None:intergenic
CTTTCCTAGACTTAAAAGAT+TGG 0.380597 4_1:+8259553 Msa0533370:CDS
AATGGAATTTGGAGATCTCT+TGG 0.382240 4_1:+8267342 Msa0533370:three_prime_UTR
CATTGAGCTTGTTCCGTGAT+AGG 0.383648 4_1:-8267228 None:intergenic
GTTGCAGTTTAGCCAATTAT+GGG 0.384569 4_1:-8260002 None:intergenic
CCTCTCTCATAATCATTTCT+CGG 0.389624 4_1:+8266580 Msa0533370:three_prime_UTR
AGATAGCAATTGTTGTTCTT+GGG 0.394944 4_1:+8257171 Msa0533370:CDS
GAATGAGAGAATAGGGCTGT+TGG 0.397530 4_1:+8257063 Msa0533370:CDS
AGGAATACACCAATATCTTC+TGG 0.399256 4_1:-8266464 None:intergenic
TGCTCTAACAACTTTGAAGT+TGG 0.399375 4_1:+8259640 Msa0533370:CDS
ACTATGCAAATTGAAGGATT+TGG 0.404377 4_1:+8265945 Msa0533370:CDS
GAACACAGTTAGCGAAGAAT+TGG 0.404393 4_1:+8257129 Msa0533370:CDS
AGAGAGCTTATCCATCCAAT+TGG 0.405438 4_1:-8267116 None:intergenic
AAGATCCAAAATTCGAAGTC+TGG 0.406189 4_1:-8266921 None:intergenic
GTCAACTGGGTTAGTTCATA+TGG 0.408059 4_1:-8267733 None:intergenic
GGAAATATACCTTCATCAAT+TGG 0.408994 4_1:+8266530 Msa0533370:three_prime_UTR
AGCATCTTGCCAAGTTTGAA+TGG 0.410211 4_1:+8259611 Msa0533370:CDS
ATCTACAACTTCTTGATTTG+AGG 0.410600 4_1:+8267068 Msa0533370:three_prime_UTR
TCCAAAATAGTAAGTCTTGT+AGG 0.410656 4_1:-8257243 None:intergenic
CTTCAATACAATGGAAAAGT+TGG 0.411026 4_1:-8268093 None:intergenic
GGTTTGAACAAATGTCTCTA+AGG 0.422364 4_1:+8266984 Msa0533370:three_prime_UTR
ATTCCCCTGTAGAAAGTTGT+TGG 0.423136 4_1:-8266660 None:intergenic
TCTACAACTTCTTGATTTGA+GGG 0.428052 4_1:+8267069 Msa0533370:three_prime_UTR
ATGTCTGAAAATATATTAGA+AGG 0.429948 4_1:+8266869 Msa0533370:three_prime_UTR
TTTCAGGTAAAATTCCCAAT+TGG 0.432490 4_1:+8267101 Msa0533370:three_prime_UTR
TTATCATGCAACAAGCTAAC+AGG 0.432790 4_1:+8267559 Msa0533370:three_prime_UTR
GACATGTTGGAAATCTCAAT+AGG 0.434832 4_1:-8266899 None:intergenic
AACAATATTCAAGGTTGGAT+TGG 0.437557 4_1:+8257355 Msa0533370:CDS
GCTTAGAGAATGAGAGAATA+GGG 0.443285 4_1:+8257056 Msa0533370:CDS
CTGACAAGTAATTATGTGAT+AGG 0.444202 4_1:-8267630 None:intergenic
CTATCACATAATTACTTGTC+AGG 0.445494 4_1:+8267631 Msa0533370:three_prime_UTR
AATCCAAGTTATTATGACTA+AGG 0.447578 4_1:-8258313 None:intergenic
GTTAAACAAGATCGACATAA+TGG 0.448441 4_1:+8267204 Msa0533370:three_prime_UTR
CGTAGATGGACAAGTATGTC+AGG 0.454370 4_1:-8266103 None:intergenic
CAATATAATTTGATGGTTGT+GGG 0.454737 4_1:+8266338 Msa0533370:three_prime_UTR
TTCAACGAATTTACATCCAA+TGG 0.459261 4_1:-8267445 None:intergenic
ACTGGTTCTCTACATGTTGA+AGG 0.464202 4_1:+8260246 Msa0533370:CDS
GTGATGTTAATGGGAAATCA+AGG 0.464987 4_1:+8257022 Msa0533370:CDS
TTGCAACAAAATGATCTCTC+TGG 0.465833 4_1:+8267016 Msa0533370:three_prime_UTR
CACTTCCTTTGTCCTTGTTG+AGG 0.466374 4_1:-8266292 None:intergenic
TATTTGGATGGTTCAATGAA+AGG 0.466391 4_1:-8258241 None:intergenic
ATCCAATGACAATGGAGAAA+AGG 0.468182 4_1:+8267921 Msa0533370:three_prime_UTR
TCATTATGCATCAACCAACT+TGG 0.468438 4_1:-8266392 None:intergenic
AAGTGCTCTAACTTCTCTTC+TGG 0.469309 4_1:+8257202 Msa0533370:intron
AGAGGTAATCCCGGTCTTTG+TGG 0.472068 4_1:+8267847 Msa0533370:three_prime_UTR
TTCATCTTACCAATTGATGA+AGG 0.474690 4_1:-8266539 None:intergenic
GAGGAGTGGTCCACAAAGAC+CGG 0.476467 4_1:-8267857 None:intergenic
TCTAGAGAATATGACTGGAT+TGG 0.476647 4_1:+8267534 Msa0533370:three_prime_UTR
TTGTCCGACAACAATATTCA+AGG 0.477413 4_1:+8257346 Msa0533370:CDS
TGGAGACATTAGATCTTTCA+GGG 0.480082 4_1:+8259573 Msa0533370:CDS
GCTCTCCAACAACTTTCTAC+AGG 0.480294 4_1:+8266655 Msa0533370:three_prime_UTR
TCGGCTAGAACTATTGGACT+TGG 0.481181 4_1:+8260209 Msa0533370:CDS
AGGTAAAATTCCCAATTGGA+TGG 0.485609 4_1:+8267105 Msa0533370:three_prime_UTR
GACAGGACTATGCAAATTGA+AGG 0.486845 4_1:+8265939 Msa0533370:intron
TATTGATATGAAAGAAAAGT+AGG 0.487615 4_1:-8266320 None:intergenic
CATCAATGCACGTTGGCGTA+TGG 0.488060 4_1:+8268029 Msa0533370:three_prime_UTR
AGCAGGCGTAGCTCTTCAAA+TGG 0.488511 4_1:-8257319 None:intergenic
TTTGTCGATTGAACCTCCAT+TGG 0.489366 4_1:+8267429 Msa0533370:three_prime_UTR
AATGTATAGATGCTGAAGAT+TGG 0.490279 4_1:-8266174 None:intergenic
TTCGAGATCAAAGGAGTTGG+AGG 0.491908 4_1:+8259967 Msa0533370:CDS
CCAAAATAGTAAGTCTTGTA+GGG 0.493966 4_1:-8257242 None:intergenic
ATGCACGTTGGCGTATGGCC+TGG 0.494295 4_1:+8268034 Msa0533370:three_prime_UTR
GAAAACATCCCGATTGAACT+AGG 0.495043 4_1:-8266827 None:intergenic
GTTGCAAACTGTCCTGTACT+AGG 0.495258 4_1:-8267805 None:intergenic
CACGTTCACACTTTCGGTCG+AGG 0.495338 4_1:-8267876 None:intergenic
GTACCTTAGTCATAATAACT+TGG 0.496870 4_1:+8258310 Msa0533370:CDS
GATTATAACTTCTTCGCTCA+AGG 0.497894 4_1:+8258332 Msa0533370:CDS
GGGTGAGATACCTAAACAAC+TGG 0.498668 4_1:+8266601 Msa0533370:three_prime_UTR
ACATGTTGGAAATCTCAATA+GGG 0.498813 4_1:-8266898 None:intergenic
ATGCTGAAGATTGGAGTGAT+TGG 0.498849 4_1:-8266165 None:intergenic
CTCTCTCATAATCATTTCTC+GGG 0.498909 4_1:+8266581 Msa0533370:three_prime_UTR
TAAGTCAAGACTCTCTATTT+GGG 0.500651 4_1:-8267683 None:intergenic
CTGACATACTTGTCCATCTA+CGG 0.502732 4_1:+8266104 Msa0533370:three_prime_UTR
AAGAGATCTCCAAATTCCAT+TGG 0.505386 4_1:-8267340 None:intergenic
ACAAGATGCTTCTATTTGGA+TGG 0.505387 4_1:-8258253 None:intergenic
TGCTTAGAGAATGAGAGAAT+AGG 0.506081 4_1:+8257055 Msa0533370:CDS
CCAACCTTGAATATTGTTGT+CGG 0.506727 4_1:-8257350 None:intergenic
GATGCAAAGCACTGTTATGA+AGG 0.509097 4_1:-8268010 None:intergenic
CCGACAACAATATTCAAGGT+TGG 0.511445 4_1:+8257350 Msa0533370:CDS
AGACATTTGTTCAAACCCAC+TGG 0.514235 4_1:-8266978 None:intergenic
GAGAGCTTATCCATCCAATT+GGG 0.515649 4_1:-8267115 None:intergenic
TAGTTGAATCATTCCCAAGT+TGG 0.517732 4_1:+8266378 Msa0533370:three_prime_UTR
GTAATTATGTGATAGGTTCA+AGG 0.519609 4_1:-8267623 None:intergenic
AGAGATCTCCAAATTCCATT+GGG 0.524035 4_1:-8267339 None:intergenic
AATTCGAAGTCTGGACATGT+TGG 0.524441 4_1:-8266912 None:intergenic
TTCAGTTTCAATGTGTACTC+CGG 0.526618 4_1:-8266213 None:intergenic
GTTGTTATAAGACACATTGA+AGG 0.531039 4_1:-8267767 None:intergenic
TGCAGTTGTCCAATTTGAGA+AGG 0.539870 4_1:-8267589 None:intergenic
TGAAGATCTACAATTTGAAG+TGG 0.540872 4_1:+8267468 Msa0533370:three_prime_UTR
AAAGTTCTAGAGAATATGAC+TGG 0.541784 4_1:+8267529 Msa0533370:three_prime_UTR
GCAAAATTCCTAGTTCAATC+GGG 0.544087 4_1:+8266819 Msa0533370:three_prime_UTR
CTCTCCAACAACTTTCTACA+GGG 0.544575 4_1:+8266656 Msa0533370:three_prime_UTR
GTTAAGTTGCTTAAACACTC+AGG 0.544694 4_1:-8266005 None:intergenic
AACCTCAGAGTTCTTGACCT+TGG 0.547207 4_1:+8266029 Msa0533370:three_prime_UTR
TACTAGGTGGTGTTCCAGAA+AGG 0.549629 4_1:-8267789 None:intergenic
GTGAGATTGCTAATGAAGGA+TGG 0.554603 4_1:-8266077 None:intergenic
GACAGCTATAGAGGTAATCC+CGG 0.557765 4_1:+8267838 Msa0533370:three_prime_UTR
CACTGAATAGATTACTGCCA+AGG 0.560230 4_1:-8266046 None:intergenic
GCAGTCAATCCATTCAAACT+TGG 0.561555 4_1:-8259620 None:intergenic
TTGTCCAATTTGAGAAGGGA+TGG 0.562552 4_1:-8267584 None:intergenic
CATAAGAAGGACACCCATAG+TGG 0.564969 4_1:-8266849 None:intergenic
TAGCGAAGAATTGGTCTCAT+GGG 0.565496 4_1:+8257138 Msa0533370:CDS
CATTATGCATCAACCAACTT+GGG 0.569222 4_1:-8266391 None:intergenic
CAAGGTTGGATTGGCATCGA+AGG 0.570042 4_1:+8257364 Msa0533370:CDS
ATTGATACTCTTCAATACAA+TGG 0.574306 4_1:-8268102 None:intergenic
TTCGTTGAGGACAGCTATAG+AGG 0.574512 4_1:+8267829 Msa0533370:three_prime_UTR
ATGGAAAACTTCTCTGCTCA+AGG 0.575312 4_1:+8259674 Msa0533370:CDS
ATATCCAGTAACTCAATCAC+AGG 0.576752 4_1:+8266797 Msa0533370:three_prime_UTR
TCTGGAACACCACCTAGTAC+AGG 0.578898 4_1:+8267793 Msa0533370:three_prime_UTR
TTAGCGAAGAATTGGTCTCA+TGG 0.578995 4_1:+8257137 Msa0533370:CDS
TGTTGTCGGACAAGTCGAGC+AGG 0.584262 4_1:-8257336 None:intergenic
AACATCATAACAAGTTTGCA+TGG 0.586338 4_1:+8260022 Msa0533370:CDS
TCTCCACATAAAAGTTTCAG+AGG 0.588270 4_1:-8268136 None:intergenic
TCGACATAATGGACCTATCA+CGG 0.588274 4_1:+8267215 Msa0533370:three_prime_UTR
ATTGGAGTGATTGGCCAAAG+TGG 0.591663 4_1:-8266156 None:intergenic
GGCGTAGCTCTTCAAATGGA+CGG 0.592271 4_1:-8257315 None:intergenic
CCGAGAAATGATTATGAGAG+AGG 0.592887 4_1:-8266580 None:intergenic
TTGTAAATTATCACAATCTG+TGG 0.593069 4_1:-8266624 None:intergenic
ATCTACGGAAATTACATGCA+AGG 0.593455 4_1:+8266119 Msa0533370:three_prime_UTR
ATGGGAAATCAAGGATGTAA+CGG 0.594838 4_1:+8257031 Msa0533370:CDS
TTTGAGCCAGAAAGTTCAGA+TGG 0.596026 4_1:-8267046 None:intergenic
CTTGGCAGTAATCTATTCAG+TGG 0.598196 4_1:+8266047 Msa0533370:three_prime_UTR
TGGAGAAAAGGAAACTGTTG+TGG 0.599113 4_1:+8267933 Msa0533370:three_prime_UTR
CGGCTAGAACTATTGGACTT+GGG 0.601856 4_1:+8260210 Msa0533370:CDS
TCATCACAATCCAATGACAA+TGG 0.607774 4_1:+8267913 Msa0533370:three_prime_UTR
TCACACTTTCGGTCGAGGAG+TGG 0.608203 4_1:-8267871 None:intergenic
AACGAATTTACATCCAATGG+AGG 0.610169 4_1:-8267442 None:intergenic
TTATCATACAATAACTTGAG+TGG 0.611254 4_1:+8267703 Msa0533370:three_prime_UTR
GCAGTTGTCCAATTTGAGAA+GGG 0.611837 4_1:-8267588 None:intergenic
TGCAACCTCAACAAGGACAA+AGG 0.616701 4_1:+8266287 Msa0533370:three_prime_UTR
CTTACTGATGTAATAAAACC+AGG 0.618779 4_1:-8268052 None:intergenic
GGATGTGAGATTGCTAATGA+AGG 0.619050 4_1:-8266081 None:intergenic
GATCATTCCAAATGTCCAGT+GGG 0.623856 4_1:+8266963 Msa0533370:three_prime_UTR
AGGAGTGGTCCACAAAGACC+GGG 0.623874 4_1:-8267856 None:intergenic
AAGTTGCTTAAACACTCAGG+AGG 0.636561 4_1:-8266002 None:intergenic
AAATAATTGCAACCTCAACA+AGG 0.642865 4_1:+8266280 Msa0533370:three_prime_UTR
TCTATAGCTGTCCTCAACGA+AGG 0.648459 4_1:-8267827 None:intergenic
AGTTGGTTGATGCATAATGA+TGG 0.653384 4_1:+8266395 Msa0533370:three_prime_UTR
GGATCATTCCAAATGTCCAG+TGG 0.655178 4_1:+8266962 Msa0533370:three_prime_UTR
CTAGAACTATTGGACTTGGG+TGG 0.661185 4_1:+8260213 Msa0533370:CDS
GTAGATGGACAAGTATGTCA+GGG 0.661412 4_1:-8266102 None:intergenic
TGCTTTGCATCAATGCACGT+TGG 0.666614 4_1:+8268022 Msa0533370:three_prime_UTR
ACAGTTTGCAACCTTCGTTG+AGG 0.677988 4_1:+8267816 Msa0533370:three_prime_UTR
TACTTCTTGTCACAACACGA+AGG 0.691019 4_1:+8257097 Msa0533370:CDS
TCTCCAACAACTTTCTACAG+GGG 0.713385 4_1:+8266657 Msa0533370:three_prime_UTR
TGCCAAGGTCAAGAACTCTG+AGG 0.714376 4_1:-8266031 None:intergenic
GCAAACTGTCCTGTACTAGG+TGG 0.719090 4_1:-8267802 None:intergenic
GTTCATGATGATGATTACGA+CGG 0.737369 4_1:+8267301 Msa0533370:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATATATATATATATA+GGG - chr4_1:8263702-8263721 None:intergenic 0.0%
!! ATATATATATATATATATAT+AGG - chr4_1:8263703-8263722 None:intergenic 0.0%
!!! TTAAAGAAATTTTATATACA+AGG - chr4_1:8257402-8257421 None:intergenic 10.0%
!!! TTTATAAATGCTTTAATTTT+AGG + chr4_1:8257941-8257960 Msa0533370:intron 10.0%
!!! TTTGTTAATTTTGATTTTTT+TGG + chr4_1:8258498-8258517 Msa0533370:intron 10.0%
!! CTCAAATATTAATATTATTT+AGG + chr4_1:8259116-8259135 Msa0533370:intron 10.0%
!! TTGTTTCAATAATTTATTTA+TGG + chr4_1:8259703-8259722 Msa0533370:intron 10.0%
!!! TAAAAATTAATATTTTCTTG+GGG - chr4_1:8259773-8259792 None:intergenic 10.0%
!!! GTTAAAAATTAATATTTTCT+TGG - chr4_1:8259775-8259794 None:intergenic 10.0%
!!! TCATTTTCATTTTTTAAAAA+AGG + chr4_1:8260147-8260166 Msa0533370:intron 10.0%
!!! TATAAATCAAAGAAATTTTT+TGG - chr4_1:8260556-8260575 None:intergenic 10.0%
!! TATATGAAATAAAAATATTG+TGG + chr4_1:8261263-8261282 Msa0533370:intron 10.0%
!! TCAAAAAAAAAAAAAAACAT+TGG - chr4_1:8261787-8261806 None:intergenic 10.0%
!! TTTGAAAATTTATATGTAAA+CGG + chr4_1:8262131-8262150 Msa0533370:intron 10.0%
!!! ATTAAGAATAATATTTTACT+TGG - chr4_1:8262317-8262336 None:intergenic 10.0%
!! AATACTATTAAAATTAAGTA+GGG - chr4_1:8262919-8262938 None:intergenic 10.0%
!! AAATACTATTAAAATTAAGT+AGG - chr4_1:8262920-8262939 None:intergenic 10.0%
!!! TAAGTAAATTTTTTTTTTGT+AGG + chr4_1:8263465-8263484 Msa0533370:intron 10.0%
!!! AAGTAAATTTTTTTTTTGTA+GGG + chr4_1:8263466-8263485 Msa0533370:intron 10.0%
!! TATATATATATATATATAGG+GGG - chr4_1:8263700-8263719 None:intergenic 10.0%
!! TTTCTTCAAAAAAAAAAAAA+AGG - chr4_1:8263881-8263900 None:intergenic 10.0%
!!! AAAAAAAAGTATAAAATAGA+AGG - chr4_1:8263977-8263996 None:intergenic 10.0%
!!! TCTATTTTATACTTTTTTTT+CGG + chr4_1:8263977-8263996 Msa0533370:intron 10.0%
!! AATAAAATGCAATATATAAT+AGG - chr4_1:8264155-8264174 None:intergenic 10.0%
!! TAATATACATGTATATATAT+GGG - chr4_1:8265186-8265205 None:intergenic 10.0%
!! ATAATATACATGTATATATA+TGG - chr4_1:8265187-8265206 None:intergenic 10.0%
!! TTTATATTTAGTGATGTTAA+TGG + chr4_1:8257012-8257031 Msa0533370:CDS 15.0%
!! TTATATTTAGTGATGTTAAT+GGG + chr4_1:8257013-8257032 Msa0533370:CDS 15.0%
!! AAGTAAATAAATGAAGAATA+AGG - chr4_1:8258905-8258924 None:intergenic 15.0%
!!! TTCATAAACTCTTTAATTTT+AGG + chr4_1:8259285-8259304 Msa0533370:intron 15.0%
!! CTTTAATTAAAATGAAAAAG+TGG + chr4_1:8259807-8259826 Msa0533370:intron 15.0%
!!! ATTTTTATTACTACTATTGA+TGG + chr4_1:8260314-8260333 Msa0533370:intron 15.0%
!! TGCTAAGTAAATTAATTAAA+AGG + chr4_1:8260479-8260498 Msa0533370:intron 15.0%
!!! GAAAACTTGTTATATTTATA+GGG - chr4_1:8260521-8260540 None:intergenic 15.0%
!!! AAAAAGTTGGTATATTTATA+AGG + chr4_1:8260952-8260971 Msa0533370:intron 15.0%
!! TAAACAATATATAAGTTACT+AGG + chr4_1:8261016-8261035 Msa0533370:intron 15.0%
!!! ATTTTTAGAAGAATTCTAAA+AGG - chr4_1:8261207-8261226 None:intergenic 15.0%
!! TTAATTATTGAAAACTTTCT+TGG + chr4_1:8261488-8261507 Msa0533370:intron 15.0%
!! ATATGAAAAAAGTTAAACTA+AGG - chr4_1:8261718-8261737 None:intergenic 15.0%
!! AAAAAAAAAAAAAACATTGG+AGG - chr4_1:8261784-8261803 None:intergenic 15.0%
!! GTATATTGGAATTATATATA+TGG - chr4_1:8262088-8262107 None:intergenic 15.0%
!!! CATATAAATTTTCAAAATTC+AGG - chr4_1:8262127-8262146 None:intergenic 15.0%
!! AAGCATAAATTAAACAAATT+TGG - chr4_1:8262603-8262622 None:intergenic 15.0%
!! AGATATAAGTAACAAAAATA+TGG - chr4_1:8262722-8262741 None:intergenic 15.0%
!! AAAGAATCGTTAAAAAATTT+AGG + chr4_1:8262844-8262863 Msa0533370:intron 15.0%
!! AAGAATCGTTAAAAAATTTA+GGG + chr4_1:8262845-8262864 Msa0533370:intron 15.0%
!! TTCAAAAATTTAAGAGTTTA+AGG - chr4_1:8263009-8263028 None:intergenic 15.0%
!! AGATAAAAAGTAATAAAATC+TGG + chr4_1:8263140-8263159 Msa0533370:intron 15.0%
!! AAATGCTATTAAAATTAAGT+AGG + chr4_1:8263331-8263350 Msa0533370:intron 15.0%
!! AATGCTATTAAAATTAAGTA+GGG + chr4_1:8263332-8263351 Msa0533370:intron 15.0%
!!! TAAACAAAATTTATTTTAGC+AGG + chr4_1:8263431-8263450 Msa0533370:intron 15.0%
!!! AAACAAAATTTATTTTAGCA+GGG + chr4_1:8263432-8263451 Msa0533370:intron 15.0%
!!! AATTACTACTTTTTAGATTT+GGG - chr4_1:8263569-8263588 None:intergenic 15.0%
!!! AAATTACTACTTTTTAGATT+TGG - chr4_1:8263570-8263589 None:intergenic 15.0%
!! CGTAACAAAATTAATAAATA+AGG - chr4_1:8263754-8263773 None:intergenic 15.0%
!! GTAAATTATGTTATTAGTAA+AGG - chr4_1:8265073-8265092 None:intergenic 15.0%
!! ACTAATAACATAATTTACAT+AGG + chr4_1:8265075-8265094 Msa0533370:intron 15.0%
!! ACTATAAATAGCTAAAAAAA+TGG + chr4_1:8265414-8265433 Msa0533370:intron 15.0%
!!! AGATAGCTTTAATAATATAA+TGG - chr4_1:8265638-8265657 None:intergenic 15.0%
!! TTCATATCAATATAATTTGA+TGG + chr4_1:8266331-8266350 Msa0533370:three_prime_UTR 15.0%
!! TCATAATTAGCAATAATTGA+CGG + chr4_1:8257501-8257520 Msa0533370:intron 20.0%
!! ATAAGTCTTACTAAATTTAG+TGG + chr4_1:8257606-8257625 Msa0533370:intron 20.0%
!! TAAGTCTTACTAAATTTAGT+GGG + chr4_1:8257607-8257626 Msa0533370:intron 20.0%
!!! AAGAGAGATATTTTTCTTAT+AGG + chr4_1:8257709-8257728 Msa0533370:intron 20.0%
!! CTATTTACAACACTATAAAA+AGG - chr4_1:8257760-8257779 None:intergenic 20.0%
!! TGATTAATTTCTCTATTCTA+TGG + chr4_1:8257996-8258015 Msa0533370:intron 20.0%
!!! GTCAATTTTAAATGGATTAA+CGG + chr4_1:8258274-8258293 Msa0533370:CDS 20.0%
!!! AGTCTTATATATAAGTACTA+AGG - chr4_1:8258458-8258477 None:intergenic 20.0%
!! TATTTACAATATCTTGCATA+TGG + chr4_1:8258601-8258620 Msa0533370:intron 20.0%
!! TAGTTATCTAGTATATCAAT+AGG + chr4_1:8258657-8258676 Msa0533370:intron 20.0%
!!! TCAATAGGTCTTATTAAATT+TGG + chr4_1:8258672-8258691 Msa0533370:intron 20.0%
!! TATATTTCTCCCTTTATAAA+AGG - chr4_1:8258815-8258834 None:intergenic 20.0%
!! CAAATAGTCATTAAAATTCA+TGG + chr4_1:8259019-8259038 Msa0533370:intron 20.0%
!!! TTGTTTTTTATTGACCAATT+CGG + chr4_1:8259201-8259220 Msa0533370:intron 20.0%
!! GTTTGTCTAAAAAATTACAT+AGG - chr4_1:8259316-8259335 None:intergenic 20.0%
!! ATCATTATGTATTATGTTCA+AGG + chr4_1:8259941-8259960 Msa0533370:intron 20.0%
!! ATTTCATTCAGTTTAATTGA+AGG - chr4_1:8260457-8260476 None:intergenic 20.0%
!!! CGAAAACTTGTTATATTTAT+AGG - chr4_1:8260522-8260541 None:intergenic 20.0%
!!! AATCAAAGAAATTTTTTGGA+TGG - chr4_1:8260552-8260571 None:intergenic 20.0%
!!! ACATGAATTGACTTAAAAAT+AGG + chr4_1:8260856-8260875 Msa0533370:intron 20.0%
!!! CATGAATTGACTTAAAAATA+GGG + chr4_1:8260857-8260876 Msa0533370:intron 20.0%
!!! TTTCATTATCTGTCATTTAA+GGG - chr4_1:8260995-8261014 None:intergenic 20.0%
!!! TTTTCATTATCTGTCATTTA+AGG - chr4_1:8260996-8261015 None:intergenic 20.0%
!! AAACTTCTAAACATTAGAAA+GGG - chr4_1:8261177-8261196 None:intergenic 20.0%
!! TTCATATAAATAAACTTTCG+TGG - chr4_1:8261251-8261270 None:intergenic 20.0%
!! TAAATAAAACTTCAATTGGT+TGG - chr4_1:8261325-8261344 None:intergenic 20.0%
!! ATATTTAGTTGGCAAAAATA+CGG - chr4_1:8261372-8261391 None:intergenic 20.0%
!!! TGAAAATGATGTTATTTGTT+CGG - chr4_1:8261449-8261468 None:intergenic 20.0%
!!! TATCTTTTTCACATATCTAA+CGG - chr4_1:8261958-8261977 None:intergenic 20.0%
!! TATTGGAATTATATATATGG+TGG - chr4_1:8262085-8262104 None:intergenic 20.0%
!! AAGTTTAAGAAACAATCAAA+TGG + chr4_1:8262489-8262508 Msa0533370:intron 20.0%
!! TAGGAAAATATATTTGTGTT+TGG - chr4_1:8262542-8262561 None:intergenic 20.0%
!! GTGTTAATAACGTTATTAAA+AGG + chr4_1:8262657-8262676 Msa0533370:intron 20.0%
!!! AATTTTGCAATAAGTTTTTG+CGG + chr4_1:8263175-8263194 Msa0533370:intron 20.0%
!! TAAACAAATTTGAATTGAGT+AGG + chr4_1:8263269-8263288 Msa0533370:intron 20.0%
!! AAACAAATTTGAATTGAGTA+GGG + chr4_1:8263270-8263289 Msa0533370:intron 20.0%
!!! CCTTAAACTCTTAAATTTTT+GGG - chr4_1:8263006-8263025 None:intergenic 20.0%
!!! TCCTTAAACTCTTAAATTTT+TGG - chr4_1:8263005-8263024 None:intergenic 20.0%
!! GAAGCTATTAAAATTAAGTA+AGG + chr4_1:8263495-8263514 Msa0533370:intron 20.0%
!!! ATTTGGGTTAAATATGTTTT+TGG - chr4_1:8263553-8263572 None:intergenic 20.0%
!! ATCTAAAAAGTAGTAATTTC+AGG + chr4_1:8263571-8263590 Msa0533370:intron 20.0%
!!! AACCACTTATTTTAATCAAA+TGG + chr4_1:8263640-8263659 Msa0533370:intron 20.0%
!! AAAAAAAAAAAAAAGGCAAG+AGG - chr4_1:8263874-8263893 None:intergenic 20.0%
!! CCAAATTTACATTGAAATTA+GGG - chr4_1:8264006-8264025 None:intergenic 20.0%
!! ACCAAATTTACATTGAAATT+AGG - chr4_1:8264007-8264026 None:intergenic 20.0%
!! ATATATACCTGAATATTGAT+AGG + chr4_1:8264028-8264047 Msa0533370:intron 20.0%
!!! GTATTTTATTTTGTCTACTA+TGG + chr4_1:8264101-8264120 Msa0533370:intron 20.0%
!! ATGCAATATATAATAGGTAA+CGG - chr4_1:8264149-8264168 None:intergenic 20.0%
!! ACTCTTTGTCAAAAATAAAA+CGG + chr4_1:8264529-8264548 Msa0533370:intron 20.0%
!!! TGCAAAAAAAAACTTAGTTT+TGG + chr4_1:8264563-8264582 Msa0533370:intron 20.0%
!!! GTGGTTAGTTTTTTTTTTTT+TGG + chr4_1:8264734-8264753 Msa0533370:intron 20.0%
!!! TTTTTGGTTACATAAAGTTT+AGG + chr4_1:8264750-8264769 Msa0533370:intron 20.0%
!! ATAATTTACATAGGTAGAAT+TGG + chr4_1:8265084-8265103 Msa0533370:intron 20.0%
!! TAATTTACATAGGTAGAATT+GGG + chr4_1:8265085-8265104 Msa0533370:intron 20.0%
!!! AAATTTGCTTATAATGTGAT+CGG + chr4_1:8265326-8265345 Msa0533370:intron 20.0%
!! TAATGGAATATCATGAAAAT+AGG - chr4_1:8265621-8265640 None:intergenic 20.0%
!! ATGTTAAATTATGCAAAGTT+GGG - chr4_1:8265795-8265814 None:intergenic 20.0%
!! AAAGTATATATTTCACAAGA+TGG + chr4_1:8265878-8265897 Msa0533370:intron 20.0%
!! TATTGATATGAAAGAAAAGT+AGG - chr4_1:8266323-8266342 None:intergenic 20.0%
!!! ATATCAAACAACAATTTTAG+TGG + chr4_1:8266434-8266453 Msa0533370:three_prime_UTR 20.0%
!!! ATATATTTTCAGACATAAGA+AGG - chr4_1:8266865-8266884 None:intergenic 20.0%
!! ATGTCTGAAAATATATTAGA+AGG + chr4_1:8266869-8266888 Msa0533370:three_prime_UTR 20.0%
!! ATCTTACATAACAATATTGT+TGG + chr4_1:8267987-8268006 Msa0533370:three_prime_UTR 20.0%
!!! CAAGAGAGATATTTTTAATG+AGG + chr4_1:8257734-8257753 Msa0533370:intron 25.0%
! TTATAGTGTTGTAAATAGTG+AGG + chr4_1:8257762-8257781 Msa0533370:intron 25.0%
!! TGTCTTTTTATCCATCAATT+TGG + chr4_1:8257830-8257849 Msa0533370:intron 25.0%
! AGAGAAATTAATCACTCAAT+TGG - chr4_1:8257990-8258009 None:intergenic 25.0%
! AGTGAAAGAGAACAAAAAAA+CGG - chr4_1:8258026-8258045 None:intergenic 25.0%
!! ACTTATTATGCTTCTTTTGA+AGG + chr4_1:8258185-8258204 Msa0533370:intron 25.0%
! CTTAAAAAGTTGGAGAAATT+AGG + chr4_1:8258218-8258237 Msa0533370:CDS 25.0%
!! AGCATCTTGTCAATTTTAAA+TGG + chr4_1:8258266-8258285 Msa0533370:CDS 25.0%
! AATCCAAGTTATTATGACTA+AGG - chr4_1:8258316-8258335 None:intergenic 25.0%
!!! ATAGGTCTTATTAAATTTGG+TGG + chr4_1:8258675-8258694 Msa0533370:intron 25.0%
!!! TAGGTCTTATTAAATTTGGT+GGG + chr4_1:8258676-8258695 Msa0533370:intron 25.0%
!!! TACAACACTTGTTTTTGTAT+TGG - chr4_1:8258719-8258738 None:intergenic 25.0%
!! AACAAGTGTTGTAAATAGTA+CGG + chr4_1:8258726-8258745 Msa0533370:intron 25.0%
! TTCCATAAATGTAACTCAAT+TGG + chr4_1:8258842-8258861 Msa0533370:intron 25.0%
! ATAAATGTAACTCAATTGGT+CGG + chr4_1:8258846-8258865 Msa0533370:intron 25.0%
! CTTCATTTATTTACTTCAAG+AGG + chr4_1:8258909-8258928 Msa0533370:intron 25.0%
! AAAAAAATCTTCATGAACGT+GGG - chr4_1:8259047-8259066 None:intergenic 25.0%
! AAAAAAAATCTTCATGAACG+TGG - chr4_1:8259048-8259067 None:intergenic 25.0%
! TAAAAGTCACGAAAAATGAA+GGG - chr4_1:8259383-8259402 None:intergenic 25.0%
! ATAAAAGTCACGAAAAATGA+AGG - chr4_1:8259384-8259403 None:intergenic 25.0%
! AAGATTGTGTAGAAAGTAAA+TGG + chr4_1:8259463-8259482 Msa0533370:intron 25.0%
!! GCTTATTATGTTTCTTTTGA+AGG + chr4_1:8259530-8259549 Msa0533370:intron 25.0%
! AAAAAGTGGTTATGAATCAT+TGG + chr4_1:8259821-8259840 Msa0533370:intron 25.0%
!!! ATGATGATTAGTTTTAACTG+TGG - chr4_1:8259926-8259945 None:intergenic 25.0%
!! CAGATTTTGTCAAATTTAGT+CGG + chr4_1:8260190-8260209 Msa0533370:intron 25.0%
! ATAAATCATATTCTCGATAG+AGG + chr4_1:8260409-8260428 Msa0533370:intron 25.0%
!! TGAAGATGGAAAACTTTTAT+GGG - chr4_1:8260581-8260600 None:intergenic 25.0%
! AAATTCTCAATCAACATTGT+TGG - chr4_1:8260884-8260903 None:intergenic 25.0%
!!! TGAGAGCATTTTAAAGAATA+TGG + chr4_1:8261096-8261115 Msa0533370:intron 25.0%
! GAAACTTCTAAACATTAGAA+AGG - chr4_1:8261178-8261197 None:intergenic 25.0%
! TCGCTAAATAAAACTTCAAT+TGG - chr4_1:8261329-8261348 None:intergenic 25.0%
!! TTTATTTAGCGAAGTTTGTT+TGG + chr4_1:8261337-8261356 Msa0533370:intron 25.0%
! TTTGCCAACTAAATATATAG+TGG + chr4_1:8261376-8261395 Msa0533370:intron 25.0%
! AACACCACTATATATTTAGT+TGG - chr4_1:8261383-8261402 None:intergenic 25.0%
! AACTAAATATATAGTGGTGT+TGG + chr4_1:8261382-8261401 Msa0533370:intron 25.0%
!! GAAAATGATGTTATTTGTTC+GGG - chr4_1:8261448-8261467 None:intergenic 25.0%
! TCAATAATTAACATTGACGT+TGG - chr4_1:8261479-8261498 None:intergenic 25.0%
! ATTATTGAAAACTTTCTTGG+AGG + chr4_1:8261491-8261510 Msa0533370:intron 25.0%
! TTATTGAAAACTTTCTTGGA+GGG + chr4_1:8261492-8261511 Msa0533370:intron 25.0%
!! TTTCTTTTTCTATCCATATG+AGG + chr4_1:8261755-8261774 Msa0533370:intron 25.0%
!! TTTCTATGTCTAATTTGTAC+TGG + chr4_1:8261911-8261930 Msa0533370:intron 25.0%
!! TTCTATGTCTAATTTGTACT+GGG + chr4_1:8261912-8261931 Msa0533370:intron 25.0%
!!! TTTGCTGTTGTTTTGTATAT+TGG - chr4_1:8262102-8262121 None:intergenic 25.0%
!!! TCATGTCATTTTTATCCTTT+TGG - chr4_1:8262158-8262177 None:intergenic 25.0%
!!! GAATAATATTTTACTTGGTG+TGG - chr4_1:8262312-8262331 None:intergenic 25.0%
! TTAAGAAACAATCAAATGGA+CGG + chr4_1:8262493-8262512 Msa0533370:intron 25.0%
! AAACAAATTTGGATTGAGTA+AGG - chr4_1:8262592-8262611 None:intergenic 25.0%
!!! AATCAAACTTTGTTTTAGCA+GGG - chr4_1:8262980-8262999 None:intergenic 25.0%
!!! TAATCAAACTTTGTTTTAGC+AGG - chr4_1:8262981-8263000 None:intergenic 25.0%
! AGTGCAGAAAAACAAAATTA+GGG + chr4_1:8263303-8263322 Msa0533370:intron 25.0%
! CCCAAAAATTTAAGAGTTTA+AGG + chr4_1:8263403-8263422 Msa0533370:intron 25.0%
! AAGTAAGGATTATACTTAGA+AGG + chr4_1:8263510-8263529 Msa0533370:intron 25.0%
!! AAAGTAGTAATTTCAGGTAT+TGG + chr4_1:8263577-8263596 Msa0533370:intron 25.0%
!! AAGTAGTAATTTCAGGTATT+GGG + chr4_1:8263578-8263597 Msa0533370:intron 25.0%
! AGCCATTTGATTAAAATAAG+TGG - chr4_1:8263645-8263664 None:intergenic 25.0%
! CCCTAATTTCAATGTAAATT+TGG + chr4_1:8264003-8264022 Msa0533370:intron 25.0%
! TTTACTAAAAAGCCTACTTA+CGG + chr4_1:8264310-8264329 Msa0533370:intron 25.0%
!!! GTTTTATTTTTGACAAAGAG+TGG - chr4_1:8264530-8264549 None:intergenic 25.0%
! CATTCAATAAATGATGTATG+TGG + chr4_1:8265253-8265272 Msa0533370:intron 25.0%
! TGTTAAATTATGCAAAGTTG+GGG - chr4_1:8265794-8265813 None:intergenic 25.0%
! GATGTTAAATTATGCAAAGT+TGG - chr4_1:8265796-8265815 None:intergenic 25.0%
! ATGACATAGTTAATTATGAC+AGG + chr4_1:8265922-8265941 Msa0533370:intron 25.0%
! ATTTCACAGAAAAATAGTAC+CGG + chr4_1:8266194-8266213 Msa0533370:three_prime_UTR 25.0%
! TTGAAACTGAAAAAACAAAG+TGG + chr4_1:8266225-8266244 Msa0533370:three_prime_UTR 25.0%
! AGTGACTTCAATTGAAATTT+AGG - chr4_1:8266254-8266273 None:intergenic 25.0%
!! TCAATATAATTTGATGGTTG+TGG + chr4_1:8266337-8266356 Msa0533370:three_prime_UTR 25.0%
!! CAATATAATTTGATGGTTGT+GGG + chr4_1:8266338-8266357 Msa0533370:three_prime_UTR 25.0%
!! TTACCTTTTTGAACTTTTCA+CGG + chr4_1:8266495-8266514 Msa0533370:three_prime_UTR 25.0%
! TTGTAAATTATCACAATCTG+TGG - chr4_1:8266627-8266646 None:intergenic 25.0%
!! TCCTAAATTTTGTAATGCAA+CGG + chr4_1:8266685-8266704 Msa0533370:three_prime_UTR 25.0%
! CTCAATAATAACAACTTTAG+TGG + chr4_1:8266725-8266744 Msa0533370:three_prime_UTR 25.0%
! CTTTCTCAAAACAAGTTAAA+TGG + chr4_1:8266941-8266960 Msa0533370:three_prime_UTR 25.0%
! TTTAACTGACACAATTGAAT+TGG - chr4_1:8267190-8267209 None:intergenic 25.0%
!! TCATTCCAAATGACATATTT+TGG - chr4_1:8267273-8267292 None:intergenic 25.0%
!!! GAACATAATGGATGTAAATT+TGG + chr4_1:8267378-8267397 Msa0533370:three_prime_UTR 25.0%
!! CACAATGAATACTTTTACAA+AGG + chr4_1:8267505-8267524 Msa0533370:three_prime_UTR 25.0%
! TTATCATACAATAACTTGAG+TGG + chr4_1:8267703-8267722 Msa0533370:three_prime_UTR 25.0%
!! TGGACATGATAACATTTTAT+TGG + chr4_1:8267953-8267972 Msa0533370:three_prime_UTR 25.0%
! ATTGATACTCTTCAATACAA+TGG - chr4_1:8268105-8268124 None:intergenic 25.0%
! AGATAGCAATTGTTGTTCTT+GGG + chr4_1:8257171-8257190 Msa0533370:CDS 30.0%
! CCAAAATAGTAAGTCTTGTA+GGG - chr4_1:8257245-8257264 None:intergenic 30.0%
! TCCAAAATAGTAAGTCTTGT+AGG - chr4_1:8257246-8257265 None:intergenic 30.0%
!! TTACTATTTTGGACTGTTCT+TGG + chr4_1:8257253-8257272 Msa0533370:CDS 30.0%
AACAATATTCAAGGTTGGAT+TGG + chr4_1:8257355-8257374 Msa0533370:CDS 30.0%
TACAACACTTATGTTTGTAC+TGG - chr4_1:8257650-8257669 None:intergenic 30.0%
TATCTTAGAGACCAAATTGA+TGG - chr4_1:8257844-8257863 None:intergenic 30.0%
!!! ATCGAGCTCTGTAATTTTTT+AGG + chr4_1:8257964-8257983 Msa0533370:intron 30.0%
! AAAGATTGTGTAGAAAGTAC+TGG + chr4_1:8258118-8258137 Msa0533370:intron 30.0%
! AGTTAGTTTCAAAGAAACAG+AGG - chr4_1:8258168-8258187 None:intergenic 30.0%
! TTTTCCAGGACTTAAAAAGT+TGG + chr4_1:8258208-8258227 Msa0533370:CDS 30.0%
TATTTGGATGGTTCAATGAA+AGG - chr4_1:8258244-8258263 None:intergenic 30.0%
ATTGACAAGATGCTTCTATT+TGG - chr4_1:8258260-8258279 None:intergenic 30.0%
GTACCTTAGTCATAATAACT+TGG + chr4_1:8258310-8258329 Msa0533370:CDS 30.0%
!! CAAGACAGATAATTTTAACG+AGG + chr4_1:8258789-8258808 Msa0533370:intron 30.0%
! TTTAACGAGGCCTTTTATAA+AGG + chr4_1:8258802-8258821 Msa0533370:intron 30.0%
! TTAACGAGGCCTTTTATAAA+GGG + chr4_1:8258803-8258822 Msa0533370:intron 30.0%
GACCAATTGAGTTACATTTA+TGG - chr4_1:8258847-8258866 None:intergenic 30.0%
CTTTCCTAGACTTAAAAGAT+TGG + chr4_1:8259553-8259572 Msa0533370:CDS 30.0%
!!! GAAGTTGGATTTTAATTCGA+TGG + chr4_1:8259655-8259674 Msa0533370:CDS 30.0%
TTCATTACGAGGAAAGAAAT+CGG + chr4_1:8259873-8259892 Msa0533370:intron 30.0%
TCTTAGAACTTTCCCATAAT+TGG + chr4_1:8259990-8260009 Msa0533370:CDS 30.0%
AACATCATAACAAGTTTGCA+TGG + chr4_1:8260022-8260041 Msa0533370:CDS 30.0%
AATTGCTTTCTCTCTACTTT+AGG + chr4_1:8260088-8260107 Msa0533370:CDS 30.0%
ATTTGACAAAATCTGTTGCA+AGG - chr4_1:8260185-8260204 None:intergenic 30.0%
TTGATGGAAAAACAGCTTAT+AGG + chr4_1:8260330-8260349 Msa0533370:intron 30.0%
! GAGTATTTCAGACTTTGTTT+AGG + chr4_1:8260369-8260388 Msa0533370:intron 30.0%
! GTGAAGATGGAAAACTTTTA+TGG - chr4_1:8260582-8260601 None:intergenic 30.0%
! AAGTTTTCCATCTTCACTTT+TGG + chr4_1:8260585-8260604 Msa0533370:intron 30.0%
! AAGTCGAACGATAATTTTAG+AGG + chr4_1:8260920-8260939 Msa0533370:intron 30.0%
! AGTCGAACGATAATTTTAGA+GGG + chr4_1:8260921-8260940 Msa0533370:intron 30.0%
GAGGGACTAAAATAAAAAGT+TGG + chr4_1:8260939-8260958 Msa0533370:intron 30.0%
ATGCTCTCAACAACAAAATT+AGG - chr4_1:8261085-8261104 None:intergenic 30.0%
! GAAGAATTCTAAAAGGAGAA+TGG - chr4_1:8261200-8261219 None:intergenic 30.0%
! GTGGTTGTCATTTATTTATG+TGG + chr4_1:8261282-8261301 Msa0533370:intron 30.0%
GAATCATCAAGCTAAAAAGA+TGG - chr4_1:8261413-8261432 None:intergenic 30.0%
TATTGAAAACTTTCTTGGAG+GGG + chr4_1:8261493-8261512 Msa0533370:intron 30.0%
! TTGCATCAATTTTTGATGCA+TGG + chr4_1:8261640-8261659 Msa0533370:intron 30.0%
ATCTACATGGGCAAATAAAA+GGG - chr4_1:8261670-8261689 None:intergenic 30.0%
ATCCATATAGATAACATTGG+AGG - chr4_1:8261816-8261835 None:intergenic 30.0%
TCCAATGTTATCTATATGGA+TGG + chr4_1:8261815-8261834 Msa0533370:intron 30.0%
TCCATCCATATAGATAACAT+TGG - chr4_1:8261819-8261838 None:intergenic 30.0%
AATGTTATCTATATGGATGG+AGG + chr4_1:8261818-8261837 Msa0533370:intron 30.0%
ATGTTATCTATATGGATGGA+GGG + chr4_1:8261819-8261838 Msa0533370:intron 30.0%
! CTTTTAACGATGAGAACAAA+TGG + chr4_1:8261869-8261888 Msa0533370:intron 30.0%
! TTTTCACATATCTAACGGTA+TGG - chr4_1:8261953-8261972 None:intergenic 30.0%
!!! ACAATTCCCATCTTTTTTCT+CGG + chr4_1:8262053-8262072 Msa0533370:intron 30.0%
GGAATTATATATATGGTGGT+TGG - chr4_1:8262081-8262100 None:intergenic 30.0%
TTATATGTAAACGGACCAAA+AGG + chr4_1:8262140-8262159 Msa0533370:intron 30.0%
! AGAGACAACATGAGTAATTT+TGG + chr4_1:8262208-8262227 Msa0533370:intron 30.0%
! TTTCAGAGCATTTATCGATA+AGG - chr4_1:8262284-8262303 None:intergenic 30.0%
! CAAGTTTAGAACACTATGAA+AGG - chr4_1:8262819-8262838 None:intergenic 30.0%
!! TACAAGGTCGCTATTTTATA+GGG - chr4_1:8263363-8263382 None:intergenic 30.0%
!! TTACAAGGTCGCTATTTTAT+AGG - chr4_1:8263362-8263381 None:intergenic 30.0%
CAAGATTAGAACACTATGAA+AGG + chr4_1:8263043-8263062 Msa0533370:intron 30.0%
GAGTGCAGAAAAACAAAATT+AGG + chr4_1:8263302-8263321 Msa0533370:intron 30.0%
!! TTACAAGGTCGCTATTTTAT+AGG + chr4_1:8263362-8263381 Msa0533370:intron 30.0%
!! TACAAGGTCGCTATTTTATA+GGG + chr4_1:8263363-8263382 Msa0533370:intron 30.0%
! TTAGAAGGTCGCAATTTTAT+AGG + chr4_1:8263525-8263544 Msa0533370:intron 30.0%
! TAGAAGGTCGCAATTTTATA+GGG + chr4_1:8263526-8263545 Msa0533370:intron 30.0%
AACCTAATAAAGCAAATGAG+CGG - chr4_1:8263804-8263823 None:intergenic 30.0%
AAAAAAAAAGGCAAGAGGAT+AGG - chr4_1:8263869-8263888 None:intergenic 30.0%
! CAATATATAATAGGTAACGG+TGG - chr4_1:8264146-8264165 None:intergenic 30.0%
! ACTTACTCCTTCATGTTTTT+AGG - chr4_1:8264266-8264285 None:intergenic 30.0%
!! GCTTTTTAGTAAATAGCAAG+TGG - chr4_1:8264303-8264322 None:intergenic 30.0%
TCAAACTCTCTCTAAATGTA+AGG + chr4_1:8264337-8264356 Msa0533370:intron 30.0%
CAAACTCTCTCTAAATGTAA+GGG + chr4_1:8264338-8264357 Msa0533370:intron 30.0%
!!! TTATTTTTGACAAAGAGTGG+AGG - chr4_1:8264527-8264546 None:intergenic 30.0%
! TCTATTACGTTTTTCTCTTC+TGG + chr4_1:8264618-8264637 Msa0533370:intron 30.0%
GAGAATAAACAAGAACACAT+AGG + chr4_1:8264712-8264731 Msa0533370:intron 30.0%
AATAAACAAGAACACATAGG+TGG + chr4_1:8264715-8264734 Msa0533370:intron 30.0%
TTGGTTACATAAAGTTTAGG+TGG + chr4_1:8264753-8264772 Msa0533370:intron 30.0%
TGGTTACATAAAGTTTAGGT+GGG + chr4_1:8264754-8264773 Msa0533370:intron 30.0%
!!! GTTTTTGGTAAATAGCAACT+GGG + chr4_1:8265107-8265126 Msa0533370:intron 30.0%
CCTTCAAAAAATGATGTATG+TGG - chr4_1:8265292-8265311 None:intergenic 30.0%
!!! CCACATACATCATTTTTTGA+AGG + chr4_1:8265289-8265308 Msa0533370:intron 30.0%
!!! CAACGTCATTTTTAACTGAA+AGG - chr4_1:8265741-8265760 None:intergenic 30.0%
AGTTAAAAATGACGTTGTGA+AGG + chr4_1:8265744-8265763 Msa0533370:intron 30.0%
CTTTGATAAATGCAAAGTTG+TGG - chr4_1:8265862-8265881 None:intergenic 30.0%
ACTATGCAAATTGAAGGATT+TGG + chr4_1:8265945-8265964 Msa0533370:CDS 30.0%
! ATCATTTTCATTGACCACTT+TGG + chr4_1:8266142-8266161 Msa0533370:three_prime_UTR 30.0%
AATGTATAGATGCTGAAGAT+TGG - chr4_1:8266177-8266196 None:intergenic 30.0%
AAATAATTGCAACCTCAACA+AGG + chr4_1:8266280-8266299 Msa0533370:three_prime_UTR 30.0%
! TGATTCAACTATTTTGTTGC+TGG - chr4_1:8266369-8266388 None:intergenic 30.0%
TAATGATGGCATACAACATT+TGG + chr4_1:8266409-8266428 Msa0533370:three_prime_UTR 30.0%
AAGTTCAAAAAGGTAACTCT+GGG - chr4_1:8266491-8266510 None:intergenic 30.0%
AAAGTTCAAAAAGGTAACTC+TGG - chr4_1:8266492-8266511 None:intergenic 30.0%
ATTCCGTGAAAAGTTCAAAA+AGG - chr4_1:8266501-8266520 None:intergenic 30.0%
GGAAATATACCTTCATCAAT+TGG + chr4_1:8266530-8266549 Msa0533370:three_prime_UTR 30.0%
TTCATCTTACCAATTGATGA+AGG - chr4_1:8266542-8266561 None:intergenic 30.0%
GATGAAAAAACTTGAGTACT+TGG + chr4_1:8266556-8266575 Msa0533370:three_prime_UTR 30.0%
TCCGTTGCATTACAAAATTT+AGG - chr4_1:8266689-8266708 None:intergenic 30.0%
! ATTTTGTAATGCAACGGATA+TGG + chr4_1:8266691-8266710 Msa0533370:three_prime_UTR 30.0%
ACATGTTGGAAATCTCAATA+GGG - chr4_1:8266901-8266920 None:intergenic 30.0%
! ATCTACAACTTCTTGATTTG+AGG + chr4_1:8267068-8267087 Msa0533370:three_prime_UTR 30.0%
! TCTACAACTTCTTGATTTGA+GGG + chr4_1:8267069-8267088 Msa0533370:three_prime_UTR 30.0%
! TTTCAGGTAAAATTCCCAAT+TGG + chr4_1:8267101-8267120 Msa0533370:three_prime_UTR 30.0%
! GAGTTACGTGTTCTTTTATT+AGG + chr4_1:8267139-8267158 Msa0533370:three_prime_UTR 30.0%
! TTACGTGTTCTTTTATTAGG+AGG + chr4_1:8267142-8267161 Msa0533370:three_prime_UTR 30.0%
! TACGTGTTCTTTTATTAGGA+GGG + chr4_1:8267143-8267162 Msa0533370:three_prime_UTR 30.0%
! TTAGGAGGGAATAATTTTGA+AGG + chr4_1:8267157-8267176 Msa0533370:three_prime_UTR 30.0%
GTTAAACAAGATCGACATAA+TGG + chr4_1:8267204-8267223 Msa0533370:three_prime_UTR 30.0%
TGCTTCCAAAATATGTCATT+TGG + chr4_1:8267265-8267284 Msa0533370:three_prime_UTR 30.0%
!! TCGTATTTTTGAATTCCCAA+TGG + chr4_1:8267324-8267343 Msa0533370:three_prime_UTR 30.0%
TTTGAATTCCCAATGGAATT+TGG + chr4_1:8267331-8267350 Msa0533370:three_prime_UTR 30.0%
!! TTTTGGTAACTCGAACATAA+TGG + chr4_1:8267366-8267385 Msa0533370:three_prime_UTR 30.0%
TTCAACGAATTTACATCCAA+TGG - chr4_1:8267448-8267467 None:intergenic 30.0%
TGAAGATCTACAATTTGAAG+TGG + chr4_1:8267468-8267487 Msa0533370:three_prime_UTR 30.0%
!! AAAGTTCTAGAGAATATGAC+TGG + chr4_1:8267529-8267548 Msa0533370:three_prime_UTR 30.0%
GTAATTATGTGATAGGTTCA+AGG - chr4_1:8267626-8267645 None:intergenic 30.0%
CTGACAAGTAATTATGTGAT+AGG - chr4_1:8267633-8267652 None:intergenic 30.0%
CTATCACATAATTACTTGTC+AGG + chr4_1:8267631-8267650 Msa0533370:three_prime_UTR 30.0%
TTGGAAAAAGTGATTGGAAT+GGG - chr4_1:8267658-8267677 None:intergenic 30.0%
ATTGGAAAAAGTGATTGGAA+TGG - chr4_1:8267659-8267678 None:intergenic 30.0%
GTAAGATTGGAAAAAGTGAT+TGG - chr4_1:8267664-8267683 None:intergenic 30.0%
TAAGTCAAGACTCTCTATTT+GGG - chr4_1:8267686-8267705 None:intergenic 30.0%
ATAAGTCAAGACTCTCTATT+TGG - chr4_1:8267687-8267706 None:intergenic 30.0%
!! CACATTGAAGGTTGATAAAA+AGG - chr4_1:8267758-8267777 None:intergenic 30.0%
GTTGTTATAAGACACATTGA+AGG - chr4_1:8267770-8267789 None:intergenic 30.0%
CTTACTGATGTAATAAAACC+AGG - chr4_1:8268055-8268074 None:intergenic 30.0%
CTTCAATACAATGGAAAAGT+TGG - chr4_1:8268096-8268115 None:intergenic 30.0%
! GAAACTTTTATGTGGAGAAT+TGG + chr4_1:8268141-8268160 Msa0533370:three_prime_UTR 30.0%
GTGATGTTAATGGGAAATCA+AGG + chr4_1:8257022-8257041 Msa0533370:CDS 35.0%
ATGGGAAATCAAGGATGTAA+CGG + chr4_1:8257031-8257050 Msa0533370:CDS 35.0%
TGCTTAGAGAATGAGAGAAT+AGG + chr4_1:8257055-8257074 Msa0533370:CDS 35.0%
GCTTAGAGAATGAGAGAATA+GGG + chr4_1:8257056-8257075 Msa0533370:CDS 35.0%
! GAGATAGCAATTGTTGTTCT+TGG + chr4_1:8257170-8257189 Msa0533370:CDS 35.0%
! CCCTACAAGACTTACTATTT+TGG + chr4_1:8257242-8257261 Msa0533370:CDS 35.0%
TTGTCCGACAACAATATTCA+AGG + chr4_1:8257346-8257365 Msa0533370:CDS 35.0%
CCAACCTTGAATATTGTTGT+CGG - chr4_1:8257353-8257372 None:intergenic 35.0%
! ACAGAGGAAGTTAGTTTCAA+AGG - chr4_1:8258152-8258171 None:intergenic 35.0%
!!! TTCTCCAACTTTTTAAGTCC+TGG - chr4_1:8258215-8258234 None:intergenic 35.0%
ACAAGATGCTTCTATTTGGA+TGG - chr4_1:8258256-8258275 None:intergenic 35.0%
GATTATAACTTCTTCGCTCA+AGG + chr4_1:8258332-8258351 Msa0533370:CDS 35.0%
AAGAGATTCACCAGTTGATT+TGG + chr4_1:8259075-8259094 Msa0533370:intron 35.0%
! AGAGATTCACCAGTTGATTT+GGG + chr4_1:8259076-8259095 Msa0533370:intron 35.0%
CTTCAAATTCCCAAATCAAC+TGG - chr4_1:8259088-8259107 None:intergenic 35.0%
GACTATCTTAAAGACCGAAT+TGG - chr4_1:8259218-8259237 None:intergenic 35.0%
!! GTCTCCAATCTTTTAAGTCT+AGG - chr4_1:8259560-8259579 None:intergenic 35.0%
TTGGAGACATTAGATCTTTC+AGG + chr4_1:8259572-8259591 Msa0533370:CDS 35.0%
TGGAGACATTAGATCTTTCA+GGG + chr4_1:8259573-8259592 Msa0533370:CDS 35.0%
GCAAGATGCTACTATTTAGA+TGG - chr4_1:8259601-8259620 None:intergenic 35.0%
!! TGCTCTAACAACTTTGAAGT+TGG + chr4_1:8259640-8259659 Msa0533370:CDS 35.0%
AGTGGTTATGAATCATTGGT+AGG + chr4_1:8259825-8259844 Msa0533370:intron 35.0%
! GACAAAAGCTTTTCATTACG+AGG + chr4_1:8259862-8259881 Msa0533370:intron 35.0%
!! TCAAGGATTTTCGAGATCAA+AGG + chr4_1:8259958-8259977 Msa0533370:intron 35.0%
!! ATTTTCGAGATCAAAGGAGT+TGG + chr4_1:8259964-8259983 Msa0533370:CDS 35.0%
GTTGCAGTTTAGCCAATTAT+GGG - chr4_1:8260005-8260024 None:intergenic 35.0%
TGTTGCAGTTTAGCCAATTA+TGG - chr4_1:8260006-8260025 None:intergenic 35.0%
TGCATGGATTCACATCATTA+AGG + chr4_1:8260038-8260057 Msa0533370:CDS 35.0%
ATTTAGTCGGCTAGAACTAT+TGG + chr4_1:8260203-8260222 Msa0533370:CDS 35.0%
TTGGGTGGTAATCAATTTAC+TGG + chr4_1:8260228-8260247 Msa0533370:CDS 35.0%
GAAGAAACCAAAAGTGAAGA+TGG - chr4_1:8260595-8260614 None:intergenic 35.0%
CATTTCGTGATGATTAGTAG+TGG + chr4_1:8261050-8261069 Msa0533370:intron 35.0%
! ATGCTCCCTAATTTTGCTTT+CGG + chr4_1:8261121-8261140 Msa0533370:intron 35.0%
TGTTCCCGAAAGCAAAATTA+GGG - chr4_1:8261129-8261148 None:intergenic 35.0%
ATGTTCCCGAAAGCAAAATT+AGG - chr4_1:8261130-8261149 None:intergenic 35.0%
TGGACATTGAATTCAAATGG+GGG - chr4_1:8261231-8261250 None:intergenic 35.0%
GTGGACATTGAATTCAAATG+GGG - chr4_1:8261232-8261251 None:intergenic 35.0%
CGTGGACATTGAATTCAAAT+GGG - chr4_1:8261233-8261252 None:intergenic 35.0%
TCGTGGACATTGAATTCAAA+TGG - chr4_1:8261234-8261253 None:intergenic 35.0%
! CTTGATGATTCCTAACAATC+AGG + chr4_1:8261422-8261441 Msa0533370:intron 35.0%
ACCTATATATTTCTTCCCCA+AGG - chr4_1:8261538-8261557 None:intergenic 35.0%
GATCTACATGGGCAAATAAA+AGG - chr4_1:8261671-8261690 None:intergenic 35.0%
GTCCTCCAATGTTATCTATA+TGG + chr4_1:8261811-8261830 Msa0533370:intron 35.0%
! GTTTTACACCTTCCACAATT+TGG - chr4_1:8261850-8261869 None:intergenic 35.0%
! AATTTGTACTGGGCTTTATG+TGG + chr4_1:8261922-8261941 Msa0533370:intron 35.0%
TTGGATCCGAGAAAAAAGAT+GGG - chr4_1:8262062-8262081 None:intergenic 35.0%
TGAGTGCAGAAATTTCTTGT+AGG - chr4_1:8262561-8262580 None:intergenic 35.0%
AAGTAGGGACTAAACTTACA+AGG - chr4_1:8263347-8263366 None:intergenic 35.0%
AAGTAGGGACTAAACTTACA+AGG + chr4_1:8263347-8263366 Msa0533370:intron 35.0%
!! TAATTTCAGGTATTGGGAGA+AGG + chr4_1:8263584-8263603 Msa0533370:intron 35.0%
GCATATCACATGAGAATGAT+AGG - chr4_1:8263678-8263697 None:intergenic 35.0%
CAAATGAGCGGGAAAAAATT+AGG - chr4_1:8263792-8263811 None:intergenic 35.0%
ACCTAATAAAGCAAATGAGC+GGG - chr4_1:8263803-8263822 None:intergenic 35.0%
CAAGAGGATAGGAATGAAAT+TGG - chr4_1:8263858-8263877 None:intergenic 35.0%
CGGTAATCCTATCAATATTC+AGG - chr4_1:8264038-8264057 None:intergenic 35.0%
!!! ACTCCTTCATGTTTTTAGGT+GGG - chr4_1:8264262-8264281 None:intergenic 35.0%
!!! TACTCCTTCATGTTTTTAGG+TGG - chr4_1:8264263-8264282 None:intergenic 35.0%
AGTAAATAGCAAGTGGAAGT+AGG - chr4_1:8264296-8264315 None:intergenic 35.0%
AAAACGCACTATTGTTGTAG+TGG + chr4_1:8264465-8264484 Msa0533370:intron 35.0%
GACACAGATTCATTATACAC+AGG - chr4_1:8264500-8264519 None:intergenic 35.0%
! ACATAAAGTTTAGGTGGGTT+CGG + chr4_1:8264759-8264778 Msa0533370:intron 35.0%
! CATAGGTAGAATTGGGTTTT+TGG + chr4_1:8265092-8265111 Msa0533370:intron 35.0%
!!! GGTTTTTGGTAAATAGCAAC+TGG + chr4_1:8265106-8265125 Msa0533370:intron 35.0%
! ACTTACTCCTTCGTGTTTTT+AGG + chr4_1:8265143-8265162 Msa0533370:intron 35.0%
TTTGCTTATAATGTGATCGG+AGG + chr4_1:8265329-8265348 Msa0533370:intron 35.0%
! ATTGAAGGATTTGGTAGAAC+TGG + chr4_1:8265954-8265973 Msa0533370:CDS 35.0%
! GTTAAGTTGCTTAAACACTC+AGG - chr4_1:8266008-8266027 None:intergenic 35.0%
TTGCATGTAATTTCCGTAGA+TGG - chr4_1:8266120-8266139 None:intergenic 35.0%
ATCTACGGAAATTACATGCA+AGG + chr4_1:8266119-8266138 Msa0533370:three_prime_UTR 35.0%
TTCAGTTTCAATGTGTACTC+CGG - chr4_1:8266216-8266235 None:intergenic 35.0%
TAGTTGAATCATTCCCAAGT+TGG + chr4_1:8266378-8266397 Msa0533370:three_prime_UTR 35.0%
CATTATGCATCAACCAACTT+GGG - chr4_1:8266394-8266413 None:intergenic 35.0%
TCATTATGCATCAACCAACT+TGG - chr4_1:8266395-8266414 None:intergenic 35.0%
! AGTTGGTTGATGCATAATGA+TGG + chr4_1:8266395-8266414 Msa0533370:three_prime_UTR 35.0%
! GGTTTTCTTCCAGAAGATAT+TGG + chr4_1:8266455-8266474 Msa0533370:three_prime_UTR 35.0%
AGGAATACACCAATATCTTC+TGG - chr4_1:8266467-8266486 None:intergenic 35.0%
!!! TTTTCACGGAATAGCTTTGA+AGG + chr4_1:8266509-8266528 Msa0533370:three_prime_UTR 35.0%
CCTCTCTCATAATCATTTCT+CGG + chr4_1:8266580-8266599 Msa0533370:three_prime_UTR 35.0%
CTCTCTCATAATCATTTCTC+GGG + chr4_1:8266581-8266600 Msa0533370:three_prime_UTR 35.0%
!! GATGTTTTGAGCTGCAATAA+AGG + chr4_1:8266758-8266777 Msa0533370:three_prime_UTR 35.0%
TTGAGCTGCAATAAAGGATT+AGG + chr4_1:8266764-8266783 Msa0533370:three_prime_UTR 35.0%
TGTGATTGAGTTACTGGATA+TGG - chr4_1:8266798-8266817 None:intergenic 35.0%
ATATCCAGTAACTCAATCAC+AGG + chr4_1:8266797-8266816 Msa0533370:three_prime_UTR 35.0%
GGCAAAATTCCTAGTTCAAT+CGG + chr4_1:8266818-8266837 Msa0533370:three_prime_UTR 35.0%
GCAAAATTCCTAGTTCAATC+GGG + chr4_1:8266819-8266838 Msa0533370:three_prime_UTR 35.0%
GACATGTTGGAAATCTCAAT+AGG - chr4_1:8266902-8266921 None:intergenic 35.0%
AAGATCCAAAATTCGAAGTC+TGG - chr4_1:8266924-8266943 None:intergenic 35.0%
GGTTTGAACAAATGTCTCTA+AGG + chr4_1:8266984-8267003 Msa0533370:three_prime_UTR 35.0%
TTGCAACAAAATGATCTCTC+TGG + chr4_1:8267016-8267035 Msa0533370:three_prime_UTR 35.0%
! TTGAGGGAGAACAAATTTTC+AGG + chr4_1:8267085-8267104 Msa0533370:three_prime_UTR 35.0%
AGGTAAAATTCCCAATTGGA+TGG + chr4_1:8267105-8267124 Msa0533370:three_prime_UTR 35.0%
!! GACATATTTTGGAAGCAAGA+TGG - chr4_1:8267262-8267281 None:intergenic 35.0%
! GTTCATGATGATGATTACGA+CGG + chr4_1:8267301-8267320 Msa0533370:three_prime_UTR 35.0%
AGAGATCTCCAAATTCCATT+GGG - chr4_1:8267342-8267361 None:intergenic 35.0%
AAGAGATCTCCAAATTCCAT+TGG - chr4_1:8267343-8267362 None:intergenic 35.0%
AATGGAATTTGGAGATCTCT+TGG + chr4_1:8267342-8267361 Msa0533370:three_prime_UTR 35.0%
! TTTGGAGATCTCTTGGATTT+TGG + chr4_1:8267349-8267368 Msa0533370:three_prime_UTR 35.0%
AACGAATTTACATCCAATGG+AGG - chr4_1:8267445-8267464 None:intergenic 35.0%
TCTAGAGAATATGACTGGAT+TGG + chr4_1:8267534-8267553 Msa0533370:three_prime_UTR 35.0%
TTATCATGCAACAAGCTAAC+AGG + chr4_1:8267559-8267578 Msa0533370:three_prime_UTR 35.0%
ACTCTCTATTTGGGTAAGAT+TGG - chr4_1:8267677-8267696 None:intergenic 35.0%
!! GGTTGATAAAAAGGTCAACT+GGG - chr4_1:8267749-8267768 None:intergenic 35.0%
!! AGGTTGATAAAAAGGTCAAC+TGG - chr4_1:8267750-8267769 None:intergenic 35.0%
GTGTCTTATAACAACCTTTC+TGG + chr4_1:8267775-8267794 Msa0533370:three_prime_UTR 35.0%
TCATCACAATCCAATGACAA+TGG + chr4_1:8267913-8267932 Msa0533370:three_prime_UTR 35.0%
ATCCAATGACAATGGAGAAA+AGG + chr4_1:8267921-8267940 Msa0533370:three_prime_UTR 35.0%
! TTCCTTTTCTCCATTGTCAT+TGG - chr4_1:8267926-8267945 None:intergenic 35.0%
!!! GTTCCTCTGAAACTTTTATG+TGG + chr4_1:8268133-8268152 Msa0533370:three_prime_UTR 35.0%
TCTCCACATAAAAGTTTCAG+AGG - chr4_1:8268139-8268158 None:intergenic 35.0%
TACTTCTTGTCACAACACGA+AGG + chr4_1:8257097-8257116 Msa0533370:CDS 40.0%
CACAACACGAAGGAGATTAT+TGG + chr4_1:8257107-8257126 Msa0533370:CDS 40.0%
GAACACAGTTAGCGAAGAAT+TGG + chr4_1:8257129-8257148 Msa0533370:CDS 40.0%
! TTAGCGAAGAATTGGTCTCA+TGG + chr4_1:8257137-8257156 Msa0533370:CDS 40.0%
! TAGCGAAGAATTGGTCTCAT+GGG + chr4_1:8257138-8257157 Msa0533370:CDS 40.0%
AAGTGCTCTAACTTCTCTTC+TGG + chr4_1:8257202-8257221 Msa0533370:intron 40.0%
CCGACAACAATATTCAAGGT+TGG + chr4_1:8257350-8257369 Msa0533370:CDS 40.0%
!! GCTTCTTTTGAAGGTTTTCC+AGG + chr4_1:8258194-8258213 Msa0533370:intron 40.0%
TCGGAACATTGCAGTATGTT+AGG + chr4_1:8258865-8258884 Msa0533370:intron 40.0%
CGGAACATTGCAGTATGTTA+GGG + chr4_1:8258866-8258885 Msa0533370:intron 40.0%
ACATTGCAGTATGTTAGGGT+TGG + chr4_1:8258870-8258889 Msa0533370:intron 40.0%
AGCATCTTGCCAAGTTTGAA+TGG + chr4_1:8259611-8259630 Msa0533370:CDS 40.0%
GCAGTCAATCCATTCAAACT+TGG - chr4_1:8259623-8259642 None:intergenic 40.0%
ATGGAAAACTTCTCTGCTCA+AGG + chr4_1:8259674-8259693 Msa0533370:CDS 40.0%
! ACTGGTTCTCTACATGTTGA+AGG + chr4_1:8260246-8260265 Msa0533370:CDS 40.0%
! TGCTCCCTAATTTTGCTTTC+GGG + chr4_1:8261122-8261141 Msa0533370:intron 40.0%
ATTAGAAAGGGAAAACCACG+AGG - chr4_1:8261165-8261184 None:intergenic 40.0%
GCCTTGGGGAAGAAATATAT+AGG + chr4_1:8261534-8261553 Msa0533370:intron 40.0%
GCAATCAACTCCATTGACAA+TGG - chr4_1:8261624-8261643 None:intergenic 40.0%
! GCTTTTAGTGCGATCTACAT+GGG - chr4_1:8261682-8261701 None:intergenic 40.0%
ACATTGGAGGATACCTCATA+TGG - chr4_1:8261771-8261790 None:intergenic 40.0%
TGGAGGGTTAAACCAAATTG+TGG + chr4_1:8261835-8261854 Msa0533370:intron 40.0%
GGGTTAAACCAAATTGTGGA+AGG + chr4_1:8261839-8261858 Msa0533370:intron 40.0%
AATCTCGAGTAGCTCAATGT+GGG - chr4_1:8262030-8262049 None:intergenic 40.0%
AAATCTCGAGTAGCTCAATG+TGG - chr4_1:8262031-8262050 None:intergenic 40.0%
GTTGGATCCGAGAAAAAAGA+TGG - chr4_1:8262063-8262082 None:intergenic 40.0%
GTTGAACATCTGCAGGAAAA+AGG - chr4_1:8262447-8262466 None:intergenic 40.0%
CTCAAATGTTGAACATCTGC+AGG - chr4_1:8262454-8262473 None:intergenic 40.0%
! TCCCGCTCATTTGCTTTATT+AGG + chr4_1:8263799-8263818 Msa0533370:intron 40.0%
ATTGGTGCGATGCATTTGTT+AGG - chr4_1:8263840-8263859 None:intergenic 40.0%
ACTCCCACCTAAAAACATGA+AGG + chr4_1:8264256-8264275 Msa0533370:intron 40.0%
GAGTTTGAATAGCCGTAAGT+AGG - chr4_1:8264325-8264344 None:intergenic 40.0%
!!! TACTCCTTCGTGTTTTTAGG+TGG + chr4_1:8265146-8265165 Msa0533370:intron 40.0%
!!! ACTCCTTCGTGTTTTTAGGT+GGG + chr4_1:8265147-8265166 Msa0533370:intron 40.0%
GACAGGACTATGCAAATTGA+AGG + chr4_1:8265939-8265958 Msa0533370:intron 40.0%
AAGTTGCTTAAACACTCAGG+AGG - chr4_1:8266005-8266024 None:intergenic 40.0%
CACTGAATAGATTACTGCCA+AGG - chr4_1:8266049-8266068 None:intergenic 40.0%
CTTGGCAGTAATCTATTCAG+TGG + chr4_1:8266047-8266066 Msa0533370:three_prime_UTR 40.0%
GTGAGATTGCTAATGAAGGA+TGG - chr4_1:8266080-8266099 None:intergenic 40.0%
GGATGTGAGATTGCTAATGA+AGG - chr4_1:8266084-8266103 None:intergenic 40.0%
GTAGATGGACAAGTATGTCA+GGG - chr4_1:8266105-8266124 None:intergenic 40.0%
CTGACATACTTGTCCATCTA+CGG + chr4_1:8266104-8266123 Msa0533370:three_prime_UTR 40.0%
ATGCTGAAGATTGGAGTGAT+TGG - chr4_1:8266168-8266187 None:intergenic 40.0%
! CAACTATTTTGTTGCTGGAG+AGG - chr4_1:8266364-8266383 None:intergenic 40.0%
! TCAAAAAGGTAACTCTGGGA+AGG - chr4_1:8266487-8266506 None:intergenic 40.0%
CCGAGAAATGATTATGAGAG+AGG - chr4_1:8266583-8266602 None:intergenic 40.0%
CTCTCCAACAACTTTCTACA+GGG + chr4_1:8266656-8266675 Msa0533370:three_prime_UTR 40.0%
TCTCCAACAACTTTCTACAG+GGG + chr4_1:8266657-8266676 Msa0533370:three_prime_UTR 40.0%
ATTCCCCTGTAGAAAGTTGT+TGG - chr4_1:8266663-8266682 None:intergenic 40.0%
TTTGCCTGTGATTGAGTTAC+TGG - chr4_1:8266804-8266823 None:intergenic 40.0%
GAAAACATCCCGATTGAACT+AGG - chr4_1:8266830-8266849 None:intergenic 40.0%
! AATCGGGATGTTTTCCACTA+TGG + chr4_1:8266835-8266854 Msa0533370:three_prime_UTR 40.0%
! ATCGGGATGTTTTCCACTAT+GGG + chr4_1:8266836-8266855 Msa0533370:three_prime_UTR 40.0%
AATTCGAAGTCTGGACATGT+TGG - chr4_1:8266915-8266934 None:intergenic 40.0%
! CATGTCCAGACTTCGAATTT+TGG + chr4_1:8266916-8266935 Msa0533370:three_prime_UTR 40.0%
TTTGAGCCAGAAAGTTCAGA+TGG - chr4_1:8267049-8267068 None:intergenic 40.0%
GAGAGCTTATCCATCCAATT+GGG - chr4_1:8267118-8267137 None:intergenic 40.0%
AGAGAGCTTATCCATCCAAT+TGG - chr4_1:8267119-8267138 None:intergenic 40.0%
!! TCGACATAATGGACCTATCA+CGG + chr4_1:8267215-8267234 Msa0533370:three_prime_UTR 40.0%
! TTTGTCGATTGAACCTCCAT+TGG + chr4_1:8267429-8267448 Msa0533370:three_prime_UTR 40.0%
TTGTCCAATTTGAGAAGGGA+TGG - chr4_1:8267587-8267606 None:intergenic 40.0%
GCAGTTGTCCAATTTGAGAA+GGG - chr4_1:8267591-8267610 None:intergenic 40.0%
TGCAGTTGTCCAATTTGAGA+AGG - chr4_1:8267592-8267611 None:intergenic 40.0%
!! GTCAACTGGGTTAGTTCATA+TGG - chr4_1:8267736-8267755 None:intergenic 40.0%
TGGAGAAAAGGAAACTGTTG+TGG + chr4_1:8267933-8267952 Msa0533370:three_prime_UTR 40.0%
!! GATGCAAAGCACTGTTATGA+AGG - chr4_1:8268013-8268032 None:intergenic 40.0%
GAATGAGAGAATAGGGCTGT+TGG + chr4_1:8257063-8257082 Msa0533370:CDS 45.0%
TTCGAGATCAAAGGAGTTGG+AGG + chr4_1:8259967-8259986 Msa0533370:CDS 45.0%
TCGGCTAGAACTATTGGACT+TGG + chr4_1:8260209-8260228 Msa0533370:CDS 45.0%
CGGCTAGAACTATTGGACTT+GGG + chr4_1:8260210-8260229 Msa0533370:CDS 45.0%
CTAGAACTATTGGACTTGGG+TGG + chr4_1:8260213-8260232 Msa0533370:CDS 45.0%
TTTGTTCGGGCCTGATTGTT+AGG - chr4_1:8261435-8261454 None:intergenic 45.0%
! CGCTTTTAGTGCGATCTACA+TGG - chr4_1:8261683-8261702 None:intergenic 45.0%
GGTTGTGGTCTTCTTGATCT+AGG - chr4_1:8261991-8262010 None:intergenic 45.0%
CAAATGGACGGATCAACTGA+AGG + chr4_1:8262505-8262524 Msa0533370:intron 45.0%
CCGCTCGGGTATATTGTAAA+GGG - chr4_1:8264192-8264211 None:intergenic 45.0%
CCCTTTACAATATACCCGAG+CGG + chr4_1:8264189-8264208 Msa0533370:intron 45.0%
TCCGCTCGGGTATATTGTAA+AGG - chr4_1:8264193-8264212 None:intergenic 45.0%
GGTAAATAGCAACTGGGAGT+AGG + chr4_1:8265113-8265132 Msa0533370:intron 45.0%
ACTCCCACCTAAAAACACGA+AGG - chr4_1:8265153-8265172 None:intergenic 45.0%
AACCTCAGAGTTCTTGACCT+TGG + chr4_1:8266029-8266048 Msa0533370:three_prime_UTR 45.0%
CGTAGATGGACAAGTATGTC+AGG - chr4_1:8266106-8266125 None:intergenic 45.0%
! ATTGGAGTGATTGGCCAAAG+TGG - chr4_1:8266159-8266178 None:intergenic 45.0%
TGCAACCTCAACAAGGACAA+AGG + chr4_1:8266287-8266306 Msa0533370:three_prime_UTR 45.0%
CACTTCCTTTGTCCTTGTTG+AGG - chr4_1:8266295-8266314 None:intergenic 45.0%
GGGTGAGATACCTAAACAAC+TGG + chr4_1:8266601-8266620 Msa0533370:three_prime_UTR 45.0%
CAATCTGTGGCCAGTTGTTT+AGG - chr4_1:8266614-8266633 None:intergenic 45.0%
GCTCTCCAACAACTTTCTAC+AGG + chr4_1:8266655-8266674 Msa0533370:three_prime_UTR 45.0%
CATAAGAAGGACACCCATAG+TGG - chr4_1:8266852-8266871 None:intergenic 45.0%
TCAGTGCCATCTGAACTTTC+TGG + chr4_1:8267040-8267059 Msa0533370:three_prime_UTR 45.0%
! CATTGAGCTTGTTCCGTGAT+AGG - chr4_1:8267231-8267250 None:intergenic 45.0%
GGTACCATCCCTTCTCAAAT+TGG + chr4_1:8267580-8267599 Msa0533370:three_prime_UTR 45.0%
TACTAGGTGGTGTTCCAGAA+AGG - chr4_1:8267792-8267811 None:intergenic 45.0%
GTTGCAAACTGTCCTGTACT+AGG - chr4_1:8267808-8267827 None:intergenic 45.0%
ACAGTTTGCAACCTTCGTTG+AGG + chr4_1:8267816-8267835 Msa0533370:three_prime_UTR 45.0%
TCTATAGCTGTCCTCAACGA+AGG - chr4_1:8267830-8267849 None:intergenic 45.0%
TTCGTTGAGGACAGCTATAG+AGG + chr4_1:8267829-8267848 Msa0533370:three_prime_UTR 45.0%
GACAGCTATAGAGGTAATCC+CGG + chr4_1:8267838-8267857 Msa0533370:three_prime_UTR 45.0%
ACTCGACACGTTCACACTTT+CGG - chr4_1:8267885-8267904 None:intergenic 45.0%
TGCTTTGCATCAATGCACGT+TGG + chr4_1:8268022-8268041 Msa0533370:three_prime_UTR 45.0%
!!! TTAAAAATTAATATTTTCTT+GGG - chr4_1:8259774-8259793 None:intergenic 5.0%
!!! TAAAAAAATCTATTTTTTTT+GGG - chr4_1:8260684-8260703 None:intergenic 5.0%
!!! TTAAAAAAATCTATTTTTTT+TGG - chr4_1:8260685-8260704 None:intergenic 5.0%
!!! AAATATGAATTTTATATTTT+CGG + chr4_1:8260718-8260737 Msa0533370:intron 5.0%
!!! ATAAGTAATTTTTTTTTATA+GGG - chr4_1:8262948-8262967 None:intergenic 5.0%
!!! TATAAGTAATTTTTTTTTAT+AGG - chr4_1:8262949-8262968 None:intergenic 5.0%
!! ATATATATATATATATATAG+GGG - chr4_1:8263701-8263720 None:intergenic 5.0%
!! AAATATTATAAAAGAAAATT+CGG - chr4_1:8264058-8264077 None:intergenic 5.0%
!! ATGTATATTATATATATATA+TGG + chr4_1:8265196-8265215 Msa0533370:intron 5.0%
GGCGTAGCTCTTCAAATGGA+CGG - chr4_1:8257318-8257337 None:intergenic 50.0%
AGCAGGCGTAGCTCTTCAAA+TGG - chr4_1:8257322-8257341 None:intergenic 50.0%
!! CAAGGTTGGATTGGCATCGA+AGG + chr4_1:8257364-8257383 Msa0533370:CDS 50.0%
!! TGGCATCGAAGGTACTACGT+TGG + chr4_1:8257375-8257394 Msa0533370:intron 50.0%
CATCAGTTTCACCTTCCTCG+TGG + chr4_1:8261147-8261166 Msa0533370:intron 50.0%
GAAAGGGAAAACCACGAGGA+AGG - chr4_1:8261161-8261180 None:intergenic 50.0%
! AAGGCCTCCAACAAGTTGGA+AGG - chr4_1:8261519-8261538 None:intergenic 50.0%
!! TTCCAACTTGTTGGAGGCCT+TGG + chr4_1:8261518-8261537 Msa0533370:intron 50.0%
!! TCCAACTTGTTGGAGGCCTT+GGG + chr4_1:8261519-8261538 Msa0533370:intron 50.0%
TGACAATGGTGTCCACAGGT+CGG - chr4_1:8261610-8261629 None:intergenic 50.0%
CCATTGACAATGGTGTCCAC+AGG - chr4_1:8261614-8261633 None:intergenic 50.0%
CCTGTGGACACCATTGTCAA+TGG + chr4_1:8261611-8261630 Msa0533370:intron 50.0%
! AGAGAGGTGATTGCTGGTTG+TGG - chr4_1:8262006-8262025 None:intergenic 50.0%
GTAGCTCAATGTGGGTAGAG+AGG - chr4_1:8262022-8262041 None:intergenic 50.0%
CTATAAGTGCCCTTTGAGCC+CGG - chr4_1:8264816-8264835 None:intergenic 50.0%
!! GGCTCAAAGGGCACTTATAG+AGG + chr4_1:8264816-8264835 Msa0533370:intron 50.0%
CGAACACACAACCTTCTGCA+AGG + chr4_1:8264887-8264906 Msa0533370:intron 50.0%
CACAACCTTCTGCAAGGAAG+TGG + chr4_1:8264893-8264912 Msa0533370:intron 50.0%
!! ACACGTTGGCTCAGTTGGTA+AGG - chr4_1:8264925-8264944 None:intergenic 50.0%
! AGCCAACGTGTGTTGGTCAT+AGG + chr4_1:8264934-8264953 Msa0533370:intron 50.0%
CACCTATGACCAACACACGT+TGG - chr4_1:8264939-8264958 None:intergenic 50.0%
! CAACGTGTGTTGGTCATAGG+TGG + chr4_1:8264937-8264956 Msa0533370:intron 50.0%
TGCCAAGGTCAAGAACTCTG+AGG - chr4_1:8266034-8266053 None:intergenic 50.0%
! TCTGGAACACCACCTAGTAC+AGG + chr4_1:8267793-8267812 Msa0533370:three_prime_UTR 50.0%
GCAAACTGTCCTGTACTAGG+TGG - chr4_1:8267805-8267824 None:intergenic 50.0%
AGAGGTAATCCCGGTCTTTG+TGG + chr4_1:8267847-8267866 Msa0533370:three_prime_UTR 50.0%
CATCAATGCACGTTGGCGTA+TGG + chr4_1:8268029-8268048 Msa0533370:three_prime_UTR 50.0%
TGTTGTCGGACAAGTCGAGC+AGG - chr4_1:8257339-8257358 None:intergenic 55.0%
!! CCAACTTGTTGGAGGCCTTG+GGG + chr4_1:8261520-8261539 Msa0533370:intron 55.0%
GACAATGGTGTCCACAGGTC+GGG - chr4_1:8261609-8261628 None:intergenic 55.0%
GTGGGTAGAGAGGTGATTGC+TGG - chr4_1:8262012-8262031 None:intergenic 55.0%
CAATATACCCGAGCGGAGCA+CGG + chr4_1:8264196-8264215 Msa0533370:intron 55.0%
AATATACCCGAGCGGAGCAC+GGG + chr4_1:8264197-8264216 Msa0533370:intron 55.0%
! TTTTTGACCCGTGCTCCGCT+CGG - chr4_1:8264207-8264226 None:intergenic 55.0%
! AGTTTAGGTGGGTTCGGCTC+CGG + chr4_1:8264765-8264784 Msa0533370:intron 55.0%
!! GATGTGAGGGCAGTGTTGGT+GGG - chr4_1:8264855-8264874 None:intergenic 55.0%
CACCAACACTGCCCTCACAT+CGG + chr4_1:8264854-8264873 Msa0533370:intron 55.0%
GATTCCCTCTGCCGATGTGA+GGG - chr4_1:8264868-8264887 None:intergenic 55.0%
ACGAGCCACTTCCTTGCAGA+AGG - chr4_1:8264901-8264920 None:intergenic 55.0%
!! CCAACACACGTTGGCTCAGT+TGG - chr4_1:8264930-8264949 None:intergenic 55.0%
CCAACTGAGCCAACGTGTGT+TGG + chr4_1:8264927-8264946 Msa0533370:intron 55.0%
AGGAGTGGTCCACAAAGACC+GGG - chr4_1:8267859-8267878 None:intergenic 55.0%
GAGGAGTGGTCCACAAAGAC+CGG - chr4_1:8267860-8267879 None:intergenic 55.0%
TCACACTTTCGGTCGAGGAG+TGG - chr4_1:8267874-8267893 None:intergenic 55.0%
CACGTTCACACTTTCGGTCG+AGG - chr4_1:8267879-8267898 None:intergenic 55.0%
GGAGGGGCCTTCCAACTTGT+TGG + chr4_1:8261509-8261528 Msa0533370:intron 60.0%
!! GGGGCCTTCCAACTTGTTGG+AGG + chr4_1:8261512-8261531 Msa0533370:intron 60.0%
CCCCAAGGCCTCCAACAAGT+TGG - chr4_1:8261523-8261542 None:intergenic 60.0%
TACAGACGTCACCCGACCTG+TGG + chr4_1:8261595-8261614 Msa0533370:intron 60.0%
! TTTTGACCCGTGCTCCGCTC+GGG - chr4_1:8264206-8264225 None:intergenic 60.0%
TAAGTGCCCTTTGAGCCCGG+AGG - chr4_1:8264813-8264832 None:intergenic 60.0%
! CGATGTGAGGGCAGTGTTGG+TGG - chr4_1:8264856-8264875 None:intergenic 60.0%
TGCCGATGTGAGGGCAGTGT+TGG - chr4_1:8264859-8264878 None:intergenic 60.0%
ACTGCCCTCACATCGGCAGA+GGG + chr4_1:8264861-8264880 Msa0533370:intron 60.0%
CGATTCCCTCTGCCGATGTG+AGG - chr4_1:8264869-8264888 None:intergenic 60.0%
ATGCACGTTGGCGTATGGCC+TGG + chr4_1:8268034-8268053 Msa0533370:three_prime_UTR 60.0%
TTCGGCTCCGGTCACCACCA+GGG + chr4_1:8264777-8264796 Msa0533370:intron 65.0%
TCCGGTCACCACCAGGGTCA+GGG + chr4_1:8264783-8264802 Msa0533370:intron 65.0%
CACTGCCCTCACATCGGCAG+AGG + chr4_1:8264860-8264879 Msa0533370:intron 65.0%
GTTCGGCTCCGGTCACCACC+AGG + chr4_1:8264776-8264795 Msa0533370:intron 70.0%
CTCCGGTCACCACCAGGGTC+AGG + chr4_1:8264782-8264801 Msa0533370:intron 70.0%
! GCCCTGACCCTGGTGGTGAC+CGG - chr4_1:8264787-8264806 None:intergenic 70.0%
GGCACGCCTCCGGGCTCAAA+GGG + chr4_1:8264804-8264823 Msa0533370:intron 70.0%
GAGGCGTGCCCTGACCCTGG+TGG - chr4_1:8264794-8264813 None:intergenic 75.0%
CCAGGGTCAGGGCACGCCTC+CGG + chr4_1:8264794-8264813 Msa0533370:intron 75.0%
CAGGGTCAGGGCACGCCTCC+GGG + chr4_1:8264795-8264814 Msa0533370:intron 75.0%
GGGCACGCCTCCGGGCTCAA+AGG + chr4_1:8264803-8264822 Msa0533370:intron 75.0%
!! CCGGAGGCGTGCCCTGACCC+TGG - chr4_1:8264797-8264816 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 8256983 8268199 8256983 ID=Msa0533370;Name=Msa0533370
chr4_1 mRNA 8256983 8268199 8256983 ID=Msa0533370-mRNA-1;Parent=Msa0533370;Name=Msa0533370-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0|0.66|0.71|1|0.66|0.57|7|2182|327
chr4_1 exon 8256983 8257198 8256983 ID=Msa0533370-mRNA-1:exon:2789;Parent=Msa0533370-mRNA-1
chr4_1 exon 8257205 8257385 8257205 ID=Msa0533370-mRNA-1:exon:2790;Parent=Msa0533370-mRNA-1
chr4_1 exon 8258207 8258353 8258207 ID=Msa0533370-mRNA-1:exon:2791;Parent=Msa0533370-mRNA-1
chr4_1 exon 8259552 8259695 8259552 ID=Msa0533370-mRNA-1:exon:2792;Parent=Msa0533370-mRNA-1
chr4_1 exon 8259963 8260109 8259963 ID=Msa0533370-mRNA-1:exon:2793;Parent=Msa0533370-mRNA-1
chr4_1 exon 8260193 8260267 8260193 ID=Msa0533370-mRNA-1:exon:2794;Parent=Msa0533370-mRNA-1
chr4_1 exon 8265944 8268199 8265944 ID=Msa0533370-mRNA-1:exon:2795;Parent=Msa0533370-mRNA-1
chr4_1 CDS 8256983 8257198 8256983 ID=Msa0533370-mRNA-1:cds;Parent=Msa0533370-mRNA-1
chr4_1 CDS 8257205 8257385 8257205 ID=Msa0533370-mRNA-1:cds;Parent=Msa0533370-mRNA-1
chr4_1 CDS 8258207 8258353 8258207 ID=Msa0533370-mRNA-1:cds;Parent=Msa0533370-mRNA-1
chr4_1 CDS 8259552 8259695 8259552 ID=Msa0533370-mRNA-1:cds;Parent=Msa0533370-mRNA-1
chr4_1 CDS 8259963 8260109 8259963 ID=Msa0533370-mRNA-1:cds;Parent=Msa0533370-mRNA-1
chr4_1 CDS 8260193 8260267 8260193 ID=Msa0533370-mRNA-1:cds;Parent=Msa0533370-mRNA-1
chr4_1 CDS 8265944 8266017 8265944 ID=Msa0533370-mRNA-1:cds;Parent=Msa0533370-mRNA-1
chr4_1 three_prime_UTR 8266018 8268199 8266018 ID=Msa0533370-mRNA-1:three_prime_utr;Parent=Msa0533370-mRNA-1
Gene Sequence

>Msa0533370

ATGAAGCTGGGTTTAATAATTAGCTCTCTTTTATATTTAGTGATGTTAATGGGAAATCAAGGATGTAACGGTTGCTTAGAGAATGAGAGAATAGGGCTGTTGGAGATCAAGCACTACTTCTTGTCACAACACGAAGGAGATTATTGGAACACAGTTAGCGAAGAATTGGTCTCATGGGTTGATGATAGAGATAGCAATTGTTGTTCTTGGGAGAGATGCTCTAACTTCTCTTCTGGTCACGTAACTGAATTATCCCTACAAGACTTACTATTTTGGACTGTTCTTGGAACAAAAAGTGATCTTGATATGTTAAATGTCTCATTGTTCCGTCCATTTGAAGAGCTACGCCTGCTCGACTTGTCCGACAACAATATTCAAGGTTGGATTGGCATCGAAGGTTTTCCAGGACTTAAAAAGTTGGAGAAATTAGGCCTTTCATTGAACCATCCAAATAGAAGCATCTTGTCAATTTTAAATGGATTAACGGCTCTAACAACTTTGTACCTTAGTCATAATAACTTGGATTATAACTTCTTCGCTCAAGGCTTTCCTAGACTTAAAAGATTGGAGACATTAGATCTTTCAGGGAACCATCTAAATAGTAGCATCTTGCCAAGTTTGAATGGATTGACTGCTCTAACAACTTTGAAGTTGGATTTTAATTCGATGGAAAACTTCTCTGCTCAAGGATTTTCGAGATCAAAGGAGTTGGAGGTCTTAGAACTTTCCCATAATTGGCTAAACTGCAACATCATAACAAGTTTGCATGGATTCACATCATTAAGGAGTTTGATTTTGAGTAATAACAAACTCAATTGCTTTCTCTCTACTTTAGATTTTGTCAAATTTAGTCGGCTAGAACTATTGGACTTGGGTGGTAATCAATTTACTGGTTCTCTACATGTTGAAGGACTATGCAAATTGAAGGATTTGGTAGAACTGGATATCAGCAGTAACATGTTGCTCAACCTCCTGAGTGTTTAA
Protein sequence

>Msa0533370

MKLGLIISSLLYLVMLMGNQGCNGCLENERIGLLEIKHYFLSQHEGDYWNTVSEELVSWVDDRDSNCCSWERCSNFSSGHVTELSLQDLLFWTVLGTKSDLDMLNVSLFRPFEELRLLDLSDNNIQGWIGIEGFPGLKKLEKLGLSLNHPNRSILSILNGLTALTTLYLSHNNLDYNFFAQGFPRLKRLETLDLSGNHLNSSILPSLNGLTALTTLKLDFNSMENFSAQGFSRSKELEVLELSHNWLNCNIITSLHGFTSLRSLILSNNKLNCFLSTLDFVKFSRLELLDLGGNQFTGSLHVEGLCKLKDLVELDISSNMLLNLLSV*