AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1258280


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1258280 MtrunA17_Chr4g0057211 94.634 615 33 0 1 615 1 615 0.0 1194
Msa1258280 MtrunA17_Chr1g0203981 48.986 641 275 14 12 610 8 638 0.0 576
Msa1258280 MtrunA17_Chr6g0474301 47.759 647 278 15 6 615 5 628 0.0 560
Msa1258280 MtrunA17_Chr8g0374071 36.723 354 190 8 31 370 68 401 1.12e-71 248
Msa1258280 MtrunA17_Chr8g0374071 40.000 205 115 5 398 598 725 925 1.39e-35 143
Msa1258280 MtrunA17_Chr8g0374091 37.309 327 179 6 50 370 95 401 2.07e-71 248
Msa1258280 MtrunA17_Chr8g0374091 38.725 204 119 4 398 598 721 921 2.68e-35 142
Msa1258280 MtrunA17_Chr4g0013751 20.430 558 326 18 75 589 6 488 9.35e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1258280 AT5G51920.1 44.046 613 277 12 1 604 1 556 7.04e-165 483
Msa1258280 AT4G22980.1 39.409 609 301 12 10 610 9 557 8.50e-136 408
Msa1258280 AT5G66950.1 40.367 327 170 6 50 370 93 400 3.79e-75 257
Msa1258280 AT5G66950.1 42.703 185 91 4 421 600 681 855 2.85e-35 142
Msa1258280 AT2G23520.1 38.532 327 176 6 50 370 95 402 1.39e-73 253
Msa1258280 AT2G23520.1 37.438 203 116 4 406 597 674 876 3.81e-30 127
Msa1258280 AT4G37100.1 36.612 366 196 9 63 421 110 446 3.06e-73 252
Msa1258280 AT4G37100.1 41.808 177 96 4 423 597 704 875 1.07e-33 137
Msa1258280 AT1G16540.2 21.793 569 310 23 75 589 4 491 3.14e-13 73.2
Msa1258280 AT1G16540.1 21.793 569 310 23 75 589 4 491 5.35e-13 72.8
Msa1258280 AT1G16540.3 21.793 569 310 23 75 589 4 491 6.28e-13 72.4

Find 92 sgRNAs with CRISPR-Local

Find 228 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAACAAGATATTTGATTAAT+TGG 0.155783 8_2:-59468128 Msa1258280:CDS
TCTCCATTCAATTCCTAAAT+TGG 0.170825 8_2:+59468740 None:intergenic
ATTTCTTCACTTAAAGATTT+AGG 0.176964 8_2:-59468432 Msa1258280:CDS
ATCGATTAAGTCAATGAATT+TGG 0.207250 8_2:-59469039 Msa1258280:CDS
CCGTCAAACTCTGGATTATT+AGG 0.217004 8_2:-59468324 Msa1258280:CDS
CCACTTTATTCAAAGGTTAC+TGG 0.222847 8_2:-59468657 Msa1258280:CDS
CAAACTATGAAGATGTTTAT+AGG 0.228960 8_2:-59467747 Msa1258280:CDS
GAATTCACATGGTCCAATTT+AGG 0.230968 8_2:-59468753 Msa1258280:CDS
CCTAAAGTGTCTCTTTCTTT+TGG 0.243729 8_2:+59468555 None:intergenic
ATGAAGATGTTTATAGGTTA+TGG 0.244282 8_2:-59467741 Msa1258280:CDS
AGGCCAATTCCCTCTCTTCT+TGG 0.281938 8_2:+59467875 None:intergenic
GAAGATGATAACATGTAAAA+AGG 0.297027 8_2:-59468709 Msa1258280:CDS
TGAAGATGTTTATAGGTTAT+GGG 0.323284 8_2:-59467740 Msa1258280:CDS
TGTGAGAAGCTCTGATCCTT+TGG 0.342674 8_2:+59468854 None:intergenic
AAAATATCAAGTTCTTTGAT+AGG 0.352408 8_2:-59467900 Msa1258280:CDS
TGGAAAACAACCATTGAAAC+AGG 0.356867 8_2:+59469439 None:intergenic
AAAATGCAACCACCTTGTTC+TGG 0.357496 8_2:-59469479 Msa1258280:CDS
ATGTCTTTGGCACAAGAAAA+TGG 0.362723 8_2:-59468612 Msa1258280:CDS
GGTGAAAATCCATCTGGATT+TGG 0.362913 8_2:-59468480 Msa1258280:CDS
CTCAAATGAGTATAGGATAT+TGG 0.368511 8_2:-59467797 Msa1258280:CDS
TTTACTGACACTATTTGAAT+TGG 0.373946 8_2:+59469376 None:intergenic
GCAAATGAAGTTGAAAAGTT+AGG 0.395110 8_2:-59467841 Msa1258280:CDS
GTCTTAACCATCTCGTTCTC+AGG 0.402171 8_2:+59468291 None:intergenic
AGTGTAATCAAAACATGTAT+TGG 0.413697 8_2:+59469169 None:intergenic
AATGAAAACTAAGGCGTAAT+CGG 0.417763 8_2:+59468929 None:intergenic
CCAGTAACCTTTGAATAAAG+TGG 0.420797 8_2:+59468657 None:intergenic
ATCTTTGGTGAAAATCCATC+TGG 0.432099 8_2:-59468486 Msa1258280:CDS
GTAAATGTGGGAGAGATTCA+TGG 0.432348 8_2:+59469294 None:intergenic
TTGAATTGGAAGTGTTATCA+TGG 0.434250 8_2:+59469390 None:intergenic
TCATCACAACCCTGTTTCAA+TGG 0.435276 8_2:-59469449 Msa1258280:CDS
GGAGATGAATGATGAAAGAT+TGG 0.441255 8_2:-59468211 Msa1258280:CDS
TGAGAAGTTGTGGAAAATTG+AGG 0.444472 8_2:+59469239 None:intergenic
AGAAGAGAGGGAATTGGCCT+TGG 0.450623 8_2:-59467872 Msa1258280:CDS
AATGAACAAACCATAAAATC+AGG 0.451423 8_2:+59468516 None:intergenic
GGTCCAATTTAGGAATTGAA+TGG 0.456840 8_2:-59468743 Msa1258280:CDS
TTCATTTGCTTTAGTTTCCA+AGG 0.465141 8_2:+59467855 None:intergenic
TTGATCTACTTGAGAAGTTG+TGG 0.473181 8_2:+59469229 None:intergenic
GAGAAGTTGTGGAAAATTGA+GGG 0.473696 8_2:+59469240 None:intergenic
TGGTTTGTGAAATGTGTGTT+GGG 0.475864 8_2:+59469314 None:intergenic
GAACCAAGAAGAGAGGGAAT+TGG 0.478067 8_2:-59467878 Msa1258280:CDS
AGCTCCACAATTTCTGATGA+TGG 0.487761 8_2:+59468243 None:intergenic
CCTAATAATCCAGAGTTTGA+CGG 0.487873 8_2:+59468324 None:intergenic
CCAAAAGAAAGAGACACTTT+AGG 0.489254 8_2:-59468555 Msa1258280:CDS
GAGTTCTCAGAGGCAAGAAA+TGG 0.491382 8_2:+59469413 None:intergenic
TGATCATAGCAATGAGGCAT+TGG 0.493736 8_2:-59468826 Msa1258280:CDS
TTTCATTAATTAGAATCTAT+GGG 0.496665 8_2:-59468056 Msa1258280:CDS
GAGAGTGCACCGTCAAACTC+TGG 0.498403 8_2:-59468333 Msa1258280:CDS
CTCATTAGCAATGAAAACTA+AGG 0.499860 8_2:+59468920 None:intergenic
TGGCATTTAATATATTTGAC+TGG 0.501389 8_2:-59468002 Msa1258280:CDS
TTTCCACAAAATCAGCATCA+AGG 0.507755 8_2:+59467701 None:intergenic
ATGGTTTGTGAAATGTGTGT+TGG 0.508371 8_2:+59469313 None:intergenic
TTTAATATATTTGACTGGAA+AGG 0.511917 8_2:-59467997 Msa1258280:CDS
TTGTGCAGAAGTTAGCTGAT+AGG 0.513041 8_2:-59467954 Msa1258280:CDS
GGAATAATATCTCTCTAAGC+AGG 0.516126 8_2:-59467933 Msa1258280:CDS
GCTAACTTCTGCACAAGTGT+TGG 0.523200 8_2:+59467961 None:intergenic
TTATATGAGTCTTGTAAATG+TGG 0.525845 8_2:+59469281 None:intergenic
AAAGTGGCTCAAATGAGTAT+AGG 0.526368 8_2:-59467804 Msa1258280:CDS
TCATTTCTATTTCAATCCAA+AGG 0.532256 8_2:-59468870 Msa1258280:CDS
TATATGAGTCTTGTAAATGT+GGG 0.535373 8_2:+59469282 None:intergenic
TTTAGGAAATGCTACAAGCA+TGG 0.536864 8_2:-59468415 Msa1258280:CDS
CTAGTTCTGATTCTTGTCCT+CGG 0.537895 8_2:+59469000 None:intergenic
TTAGGAAATGCTACAAGCAT+GGG 0.540646 8_2:-59468414 Msa1258280:CDS
TGAATTGGAAGTGTTATCAT+GGG 0.542936 8_2:+59469391 None:intergenic
ATCACCATCATCAGAAATTG+TGG 0.551638 8_2:-59468247 Msa1258280:CDS
AATATATTAAATGCCACTGT+AGG 0.551745 8_2:+59468009 None:intergenic
AATTGTGGAGCTACAAGGCA+TGG 0.566632 8_2:-59468232 Msa1258280:CDS
TCAGAAATTGTGGAGCTACA+AGG 0.567806 8_2:-59468237 Msa1258280:CDS
GGCATGTCCAAGAAGAAAAG+TGG 0.570932 8_2:-59467820 Msa1258280:CDS
AAGACTTGAAGATGTGGCTG+AGG 0.577054 8_2:+59469340 None:intergenic
TTGATAGGAACCAAGAAGAG+AGG 0.577292 8_2:-59467885 Msa1258280:CDS
CGCTTCTCCTGAGAACGAGA+TGG 0.584335 8_2:-59468298 Msa1258280:CDS
TGATAGGAACCAAGAAGAGA+GGG 0.586492 8_2:-59467884 Msa1258280:CDS
AATAAACAACCAAATCCAGA+TGG 0.590992 8_2:+59468471 None:intergenic
TCAGAGGCAAGAAATGGAGA+TGG 0.596800 8_2:+59469419 None:intergenic
GACTAAAGAAGAGCAAAATG+AGG 0.605972 8_2:-59468271 Msa1258280:CDS
CTTTGGCACAAGAAAATGGT+TGG 0.615852 8_2:-59468608 Msa1258280:CDS
ATTGATAGTTGCAAGAAGCA+AGG 0.622439 8_2:-59468795 Msa1258280:CDS
GTGTGACATTGTGCAAATGT+AGG 0.624324 8_2:+59468375 None:intergenic
ATGCAACCACCTTGTTCTGG+AGG 0.626754 8_2:-59469476 Msa1258280:CDS
TTAGACCACGCAGACTCAGT+GGG 0.643409 8_2:-59468171 Msa1258280:CDS
TTCACATCGTGGACCTACAG+TGG 0.650419 8_2:-59468022 Msa1258280:CDS
AGATTGGAAATTGAGTGTAG+AGG 0.650792 8_2:-59468195 Msa1258280:CDS
ATTAGACCACGCAGACTCAG+TGG 0.651262 8_2:-59468172 Msa1258280:CDS
GATGATGTTCCTCCAGAACA+AGG 0.675190 8_2:+59469467 None:intergenic
CAAGTAGCGAGTAGACGACG+AGG 0.680933 8_2:+59469088 None:intergenic
TTAGTCCCACTGAGTCTGCG+TGG 0.687077 8_2:+59468166 None:intergenic
AGTGTATGATCATAGCAATG+AGG 0.687969 8_2:-59468832 Msa1258280:CDS
GGGATAAAGACTTGAAGATG+TGG 0.694505 8_2:+59469334 None:intergenic
GGAAAACAACCATTGAAACA+GGG 0.697784 8_2:+59469440 None:intergenic
GTTATCATGGGAGTTCTCAG+AGG 0.702910 8_2:+59469403 None:intergenic
GAGTCACAGATACTCTACCG+AGG 0.772925 8_2:-59469017 Msa1258280:CDS
GATGTTCCTCCAGAACAAGG+TGG 0.816731 8_2:+59469470 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTCATTAATTAGAATCTA+TGG - chr8_2:59469070-59469089 Msa1258280:CDS 15.0%
!! TTTCATTAATTAGAATCTAT+GGG - chr8_2:59469071-59469090 Msa1258280:CDS 15.0%
!!! TTTTCATTAATTAGAATCTA+TGG - chr8_2:59469070-59469089 Msa1258280:CDS 15.0%
!! TTTCATTAATTAGAATCTAT+GGG - chr8_2:59469071-59469090 Msa1258280:CDS 15.0%
!!! ATGAATAAGAACATGATTTT+TGG + chr8_2:59468016-59468035 None:intergenic 20.0%
!!! TATGTTTAAACCTGATTTTA+TGG - chr8_2:59468601-59468620 Msa1258280:CDS 20.0%
!!! TGTTCATTTTACAAAATCTT+TGG - chr8_2:59468626-59468645 Msa1258280:CDS 20.0%
!! ATTTCTTCACTTAAAGATTT+AGG - chr8_2:59468695-59468714 Msa1258280:CDS 20.0%
!! GAACAAGATATTTGATTAAT+TGG - chr8_2:59468999-59469018 Msa1258280:CDS 20.0%
!! TTTAATATATTTGACTGGAA+AGG - chr8_2:59469130-59469149 Msa1258280:CDS 20.0%
!! AAAATATCAAGTTCTTTGAT+AGG - chr8_2:59469227-59469246 Msa1258280:CDS 20.0%
!!! ATGAATAAGAACATGATTTT+TGG + chr8_2:59468016-59468035 None:intergenic 20.0%
!!! TATGTTTAAACCTGATTTTA+TGG - chr8_2:59468601-59468620 Msa1258280:CDS 20.0%
!!! TGTTCATTTTACAAAATCTT+TGG - chr8_2:59468626-59468645 Msa1258280:CDS 20.0%
!! ATTTCTTCACTTAAAGATTT+AGG - chr8_2:59468695-59468714 Msa1258280:CDS 20.0%
!! GAACAAGATATTTGATTAAT+TGG - chr8_2:59468999-59469018 Msa1258280:CDS 20.0%
!! TTTAATATATTTGACTGGAA+AGG - chr8_2:59469130-59469149 Msa1258280:CDS 20.0%
!! AAAATATCAAGTTCTTTGAT+AGG - chr8_2:59469227-59469246 Msa1258280:CDS 20.0%
! TTTACTGACACTATTTGAAT+TGG + chr8_2:59467754-59467773 None:intergenic 25.0%
!! TATATGAGTCTTGTAAATGT+GGG + chr8_2:59467848-59467867 None:intergenic 25.0%
!! TTATATGAGTCTTGTAAATG+TGG + chr8_2:59467849-59467868 None:intergenic 25.0%
! AGTGTAATCAAAACATGTAT+TGG + chr8_2:59467961-59467980 None:intergenic 25.0%
!!! AATACATGTTTTGATTACAC+TGG - chr8_2:59467960-59467979 Msa1258280:CDS 25.0%
! ATCGATTAAGTCAATGAATT+TGG - chr8_2:59468088-59468107 Msa1258280:CDS 25.0%
! TCATTTCTATTTCAATCCAA+AGG - chr8_2:59468257-59468276 Msa1258280:CDS 25.0%
! GAAGATGATAACATGTAAAA+AGG - chr8_2:59468418-59468437 Msa1258280:CDS 25.0%
!! TGTTTTTCCACTTTATTCAA+AGG - chr8_2:59468463-59468482 Msa1258280:CDS 25.0%
!!! GATCACCATATTCTTATTTT+TGG - chr8_2:59468492-59468511 Msa1258280:CDS 25.0%
! GACATCCAAAAATAAGAATA+TGG + chr8_2:59468500-59468519 None:intergenic 25.0%
!!! TTCTTATTTTTGGATGTCTT+TGG - chr8_2:59468502-59468521 Msa1258280:CDS 25.0%
! AATGAACAAACCATAAAATC+AGG + chr8_2:59468614-59468633 None:intergenic 25.0%
!! GAAAATCTATTTTCATCATG+TGG + chr8_2:59469055-59469074 None:intergenic 25.0%
! AATATATTAAATGCCACTGT+AGG + chr8_2:59469121-59469140 None:intergenic 25.0%
! TGGCATTTAATATATTTGAC+TGG - chr8_2:59469125-59469144 Msa1258280:CDS 25.0%
!!! GAACTTGATATTTTTCAAAC+AGG + chr8_2:59469221-59469240 None:intergenic 25.0%
! CAAACTATGAAGATGTTTAT+AGG - chr8_2:59469380-59469399 Msa1258280:CDS 25.0%
! ATGAAGATGTTTATAGGTTA+TGG - chr8_2:59469386-59469405 Msa1258280:CDS 25.0%
! TGAAGATGTTTATAGGTTAT+GGG - chr8_2:59469387-59469406 Msa1258280:CDS 25.0%
! TTTACTGACACTATTTGAAT+TGG + chr8_2:59467754-59467773 None:intergenic 25.0%
!! TATATGAGTCTTGTAAATGT+GGG + chr8_2:59467848-59467867 None:intergenic 25.0%
!! TTATATGAGTCTTGTAAATG+TGG + chr8_2:59467849-59467868 None:intergenic 25.0%
! AGTGTAATCAAAACATGTAT+TGG + chr8_2:59467961-59467980 None:intergenic 25.0%
!!! AATACATGTTTTGATTACAC+TGG - chr8_2:59467960-59467979 Msa1258280:CDS 25.0%
! ATCGATTAAGTCAATGAATT+TGG - chr8_2:59468088-59468107 Msa1258280:CDS 25.0%
! TCATTTCTATTTCAATCCAA+AGG - chr8_2:59468257-59468276 Msa1258280:CDS 25.0%
! GAAGATGATAACATGTAAAA+AGG - chr8_2:59468418-59468437 Msa1258280:CDS 25.0%
!! TGTTTTTCCACTTTATTCAA+AGG - chr8_2:59468463-59468482 Msa1258280:CDS 25.0%
!!! GATCACCATATTCTTATTTT+TGG - chr8_2:59468492-59468511 Msa1258280:CDS 25.0%
! GACATCCAAAAATAAGAATA+TGG + chr8_2:59468500-59468519 None:intergenic 25.0%
!!! TTCTTATTTTTGGATGTCTT+TGG - chr8_2:59468502-59468521 Msa1258280:CDS 25.0%
! AATGAACAAACCATAAAATC+AGG + chr8_2:59468614-59468633 None:intergenic 25.0%
!! GAAAATCTATTTTCATCATG+TGG + chr8_2:59469055-59469074 None:intergenic 25.0%
! AATATATTAAATGCCACTGT+AGG + chr8_2:59469121-59469140 None:intergenic 25.0%
! TGGCATTTAATATATTTGAC+TGG - chr8_2:59469125-59469144 Msa1258280:CDS 25.0%
!!! GAACTTGATATTTTTCAAAC+AGG + chr8_2:59469221-59469240 None:intergenic 25.0%
! CAAACTATGAAGATGTTTAT+AGG - chr8_2:59469380-59469399 Msa1258280:CDS 25.0%
! ATGAAGATGTTTATAGGTTA+TGG - chr8_2:59469386-59469405 Msa1258280:CDS 25.0%
! TGAAGATGTTTATAGGTTAT+GGG - chr8_2:59469387-59469406 Msa1258280:CDS 25.0%
!! TGAATTGGAAGTGTTATCAT+GGG + chr8_2:59467739-59467758 None:intergenic 30.0%
!! TTGAATTGGAAGTGTTATCA+TGG + chr8_2:59467740-59467759 None:intergenic 30.0%
!!! TGTTTTGATTACACTGGTTA+TGG - chr8_2:59467966-59467985 Msa1258280:CDS 30.0%
AATGAAAACTAAGGCGTAAT+CGG + chr8_2:59468201-59468220 None:intergenic 30.0%
CTCATTAGCAATGAAAACTA+AGG + chr8_2:59468210-59468229 None:intergenic 30.0%
!! CTTAGTTTTCATTGCTAATG+AGG - chr8_2:59468208-59468227 Msa1258280:CDS 30.0%
! TTTTATCAGCAGAATTCACA+TGG - chr8_2:59468363-59468382 Msa1258280:CDS 30.0%
TCTCCATTCAATTCCTAAAT+TGG + chr8_2:59468390-59468409 None:intergenic 30.0%
TGTAAAAAGGAGAAGAGAAA+AGG - chr8_2:59468431-59468450 Msa1258280:CDS 30.0%
AATAAACAACCAAATCCAGA+TGG + chr8_2:59468659-59468678 None:intergenic 30.0%
!! CCACGATGTGAATTTATTTT+TGG + chr8_2:59469097-59469116 None:intergenic 30.0%
CCAAAAATAAATTCACATCG+TGG - chr8_2:59469094-59469113 Msa1258280:CDS 30.0%
! TTCATTTGCTTTAGTTTCCA+AGG + chr8_2:59469275-59469294 None:intergenic 30.0%
GCAAATGAAGTTGAAAAGTT+AGG - chr8_2:59469286-59469305 Msa1258280:CDS 30.0%
CTCAAATGAGTATAGGATAT+TGG - chr8_2:59469330-59469349 Msa1258280:CDS 30.0%
! ATTTTGTGGAAAAAGAGAGA+TGG - chr8_2:59469437-59469456 Msa1258280:CDS 30.0%
!! TGAATTGGAAGTGTTATCAT+GGG + chr8_2:59467739-59467758 None:intergenic 30.0%
!! TTGAATTGGAAGTGTTATCA+TGG + chr8_2:59467740-59467759 None:intergenic 30.0%
!!! TGTTTTGATTACACTGGTTA+TGG - chr8_2:59467966-59467985 Msa1258280:CDS 30.0%
AATGAAAACTAAGGCGTAAT+CGG + chr8_2:59468201-59468220 None:intergenic 30.0%
CTCATTAGCAATGAAAACTA+AGG + chr8_2:59468210-59468229 None:intergenic 30.0%
!! CTTAGTTTTCATTGCTAATG+AGG - chr8_2:59468208-59468227 Msa1258280:CDS 30.0%
! TTTTATCAGCAGAATTCACA+TGG - chr8_2:59468363-59468382 Msa1258280:CDS 30.0%
TCTCCATTCAATTCCTAAAT+TGG + chr8_2:59468390-59468409 None:intergenic 30.0%
TGTAAAAAGGAGAAGAGAAA+AGG - chr8_2:59468431-59468450 Msa1258280:CDS 30.0%
AATAAACAACCAAATCCAGA+TGG + chr8_2:59468659-59468678 None:intergenic 30.0%
!! CCACGATGTGAATTTATTTT+TGG + chr8_2:59469097-59469116 None:intergenic 30.0%
CCAAAAATAAATTCACATCG+TGG - chr8_2:59469094-59469113 Msa1258280:CDS 30.0%
! TTCATTTGCTTTAGTTTCCA+AGG + chr8_2:59469275-59469294 None:intergenic 30.0%
GCAAATGAAGTTGAAAAGTT+AGG - chr8_2:59469286-59469305 Msa1258280:CDS 30.0%
CTCAAATGAGTATAGGATAT+TGG - chr8_2:59469330-59469349 Msa1258280:CDS 30.0%
! ATTTTGTGGAAAAAGAGAGA+TGG - chr8_2:59469437-59469456 Msa1258280:CDS 30.0%
GGAAAACAACCATTGAAACA+GGG + chr8_2:59467690-59467709 None:intergenic 35.0%
TGGAAAACAACCATTGAAAC+AGG + chr8_2:59467691-59467710 None:intergenic 35.0%
! TGGTTTGTGAAATGTGTGTT+GGG + chr8_2:59467816-59467835 None:intergenic 35.0%
! ATGGTTTGTGAAATGTGTGT+TGG + chr8_2:59467817-59467836 None:intergenic 35.0%
GAGAAGTTGTGGAAAATTGA+GGG + chr8_2:59467890-59467909 None:intergenic 35.0%
TGAGAAGTTGTGGAAAATTG+AGG + chr8_2:59467891-59467910 None:intergenic 35.0%
TTGATCTACTTGAGAAGTTG+TGG + chr8_2:59467901-59467920 None:intergenic 35.0%
AGTGTATGATCATAGCAATG+AGG - chr8_2:59468295-59468314 Msa1258280:CDS 35.0%
! ATTGATAGTTGCAAGAAGCA+AGG - chr8_2:59468332-59468351 Msa1258280:CDS 35.0%
GAATTCACATGGTCCAATTT+AGG - chr8_2:59468374-59468393 Msa1258280:CDS 35.0%
GGTCCAATTTAGGAATTGAA+TGG - chr8_2:59468384-59468403 Msa1258280:CDS 35.0%
CCAGTAACCTTTGAATAAAG+TGG + chr8_2:59468473-59468492 None:intergenic 35.0%
CCACTTTATTCAAAGGTTAC+TGG - chr8_2:59468470-59468489 Msa1258280:CDS 35.0%
ATGTCTTTGGCACAAGAAAA+TGG - chr8_2:59468515-59468534 Msa1258280:CDS 35.0%
!! CCTAAAGTGTCTCTTTCTTT+TGG + chr8_2:59468575-59468594 None:intergenic 35.0%
CCAAAAGAAAGAGACACTTT+AGG - chr8_2:59468572-59468591 Msa1258280:CDS 35.0%
ATCTTTGGTGAAAATCCATC+TGG - chr8_2:59468641-59468660 Msa1258280:CDS 35.0%
TTTAGGAAATGCTACAAGCA+TGG - chr8_2:59468712-59468731 Msa1258280:CDS 35.0%
TTAGGAAATGCTACAAGCAT+GGG - chr8_2:59468713-59468732 Msa1258280:CDS 35.0%
CCTAATAATCCAGAGTTTGA+CGG + chr8_2:59468806-59468825 None:intergenic 35.0%
GACTAAAGAAGAGCAAAATG+AGG - chr8_2:59468856-59468875 Msa1258280:CDS 35.0%
ATCACCATCATCAGAAATTG+TGG - chr8_2:59468880-59468899 Msa1258280:CDS 35.0%
GGAGATGAATGATGAAAGAT+TGG - chr8_2:59468916-59468935 Msa1258280:CDS 35.0%
AGATTGGAAATTGAGTGTAG+AGG - chr8_2:59468932-59468951 Msa1258280:CDS 35.0%
GGAATAATATCTCTCTAAGC+AGG - chr8_2:59469194-59469213 Msa1258280:CDS 35.0%
!!! ATTTGAGCCACTTTTCTTCT+TGG + chr8_2:59469317-59469336 None:intergenic 35.0%
AAAGTGGCTCAAATGAGTAT+AGG - chr8_2:59469323-59469342 Msa1258280:CDS 35.0%
!!! ATTGGTTTTGACTGCAACAT+TGG - chr8_2:59469348-59469367 Msa1258280:CDS 35.0%
!!! TTGGTTTTGACTGCAACATT+GGG - chr8_2:59469349-59469368 Msa1258280:CDS 35.0%
TTTCCACAAAATCAGCATCA+AGG + chr8_2:59469429-59469448 None:intergenic 35.0%
GGAAAACAACCATTGAAACA+GGG + chr8_2:59467690-59467709 None:intergenic 35.0%
TGGAAAACAACCATTGAAAC+AGG + chr8_2:59467691-59467710 None:intergenic 35.0%
! TGGTTTGTGAAATGTGTGTT+GGG + chr8_2:59467816-59467835 None:intergenic 35.0%
! ATGGTTTGTGAAATGTGTGT+TGG + chr8_2:59467817-59467836 None:intergenic 35.0%
GAGAAGTTGTGGAAAATTGA+GGG + chr8_2:59467890-59467909 None:intergenic 35.0%
TGAGAAGTTGTGGAAAATTG+AGG + chr8_2:59467891-59467910 None:intergenic 35.0%
TTGATCTACTTGAGAAGTTG+TGG + chr8_2:59467901-59467920 None:intergenic 35.0%
AGTGTATGATCATAGCAATG+AGG - chr8_2:59468295-59468314 Msa1258280:CDS 35.0%
! ATTGATAGTTGCAAGAAGCA+AGG - chr8_2:59468332-59468351 Msa1258280:CDS 35.0%
GAATTCACATGGTCCAATTT+AGG - chr8_2:59468374-59468393 Msa1258280:CDS 35.0%
GGTCCAATTTAGGAATTGAA+TGG - chr8_2:59468384-59468403 Msa1258280:CDS 35.0%
CCAGTAACCTTTGAATAAAG+TGG + chr8_2:59468473-59468492 None:intergenic 35.0%
CCACTTTATTCAAAGGTTAC+TGG - chr8_2:59468470-59468489 Msa1258280:CDS 35.0%
ATGTCTTTGGCACAAGAAAA+TGG - chr8_2:59468515-59468534 Msa1258280:CDS 35.0%
!! CCTAAAGTGTCTCTTTCTTT+TGG + chr8_2:59468575-59468594 None:intergenic 35.0%
CCAAAAGAAAGAGACACTTT+AGG - chr8_2:59468572-59468591 Msa1258280:CDS 35.0%
ATCTTTGGTGAAAATCCATC+TGG - chr8_2:59468641-59468660 Msa1258280:CDS 35.0%
TTTAGGAAATGCTACAAGCA+TGG - chr8_2:59468712-59468731 Msa1258280:CDS 35.0%
TTAGGAAATGCTACAAGCAT+GGG - chr8_2:59468713-59468732 Msa1258280:CDS 35.0%
CCTAATAATCCAGAGTTTGA+CGG + chr8_2:59468806-59468825 None:intergenic 35.0%
GACTAAAGAAGAGCAAAATG+AGG - chr8_2:59468856-59468875 Msa1258280:CDS 35.0%
ATCACCATCATCAGAAATTG+TGG - chr8_2:59468880-59468899 Msa1258280:CDS 35.0%
GGAGATGAATGATGAAAGAT+TGG - chr8_2:59468916-59468935 Msa1258280:CDS 35.0%
AGATTGGAAATTGAGTGTAG+AGG - chr8_2:59468932-59468951 Msa1258280:CDS 35.0%
GGAATAATATCTCTCTAAGC+AGG - chr8_2:59469194-59469213 Msa1258280:CDS 35.0%
!!! ATTTGAGCCACTTTTCTTCT+TGG + chr8_2:59469317-59469336 None:intergenic 35.0%
AAAGTGGCTCAAATGAGTAT+AGG - chr8_2:59469323-59469342 Msa1258280:CDS 35.0%
!!! ATTGGTTTTGACTGCAACAT+TGG - chr8_2:59469348-59469367 Msa1258280:CDS 35.0%
!!! TTGGTTTTGACTGCAACATT+GGG - chr8_2:59469349-59469368 Msa1258280:CDS 35.0%
TTTCCACAAAATCAGCATCA+AGG + chr8_2:59469429-59469448 None:intergenic 35.0%
TCATCACAACCCTGTTTCAA+TGG - chr8_2:59467678-59467697 Msa1258280:CDS 40.0%
GGGATAAAGACTTGAAGATG+TGG + chr8_2:59467796-59467815 None:intergenic 40.0%
GTAAATGTGGGAGAGATTCA+TGG + chr8_2:59467836-59467855 None:intergenic 40.0%
!! CTAGTTCTGATTCTTGTCCT+CGG + chr8_2:59468130-59468149 None:intergenic 40.0%
TGATCATAGCAATGAGGCAT+TGG - chr8_2:59468301-59468320 Msa1258280:CDS 40.0%
CTTTGGCACAAGAAAATGGT+TGG - chr8_2:59468519-59468538 Msa1258280:CDS 40.0%
GGTGAAAATCCATCTGGATT+TGG - chr8_2:59468647-59468666 Msa1258280:CDS 40.0%
GTGTGACATTGTGCAAATGT+AGG + chr8_2:59468755-59468774 None:intergenic 40.0%
CCGTCAAACTCTGGATTATT+AGG - chr8_2:59468803-59468822 Msa1258280:CDS 40.0%
AGCTCCACAATTTCTGATGA+TGG + chr8_2:59468887-59468906 None:intergenic 40.0%
TCAGAAATTGTGGAGCTACA+AGG - chr8_2:59468890-59468909 Msa1258280:CDS 40.0%
TTGTGCAGAAGTTAGCTGAT+AGG - chr8_2:59469173-59469192 Msa1258280:CDS 40.0%
TTGATAGGAACCAAGAAGAG+AGG - chr8_2:59469242-59469261 Msa1258280:CDS 40.0%
TGATAGGAACCAAGAAGAGA+GGG - chr8_2:59469243-59469262 Msa1258280:CDS 40.0%
!! GGTTATGGGCTTTTGTTTCT+AGG - chr8_2:59469401-59469420 Msa1258280:CDS 40.0%
!!! GTTCCTTGATGCTGATTTTG+TGG - chr8_2:59469423-59469442 Msa1258280:CDS 40.0%
TCATCACAACCCTGTTTCAA+TGG - chr8_2:59467678-59467697 Msa1258280:CDS 40.0%
GGGATAAAGACTTGAAGATG+TGG + chr8_2:59467796-59467815 None:intergenic 40.0%
GTAAATGTGGGAGAGATTCA+TGG + chr8_2:59467836-59467855 None:intergenic 40.0%
!! CTAGTTCTGATTCTTGTCCT+CGG + chr8_2:59468130-59468149 None:intergenic 40.0%
TGATCATAGCAATGAGGCAT+TGG - chr8_2:59468301-59468320 Msa1258280:CDS 40.0%
CTTTGGCACAAGAAAATGGT+TGG - chr8_2:59468519-59468538 Msa1258280:CDS 40.0%
GGTGAAAATCCATCTGGATT+TGG - chr8_2:59468647-59468666 Msa1258280:CDS 40.0%
GTGTGACATTGTGCAAATGT+AGG + chr8_2:59468755-59468774 None:intergenic 40.0%
CCGTCAAACTCTGGATTATT+AGG - chr8_2:59468803-59468822 Msa1258280:CDS 40.0%
AGCTCCACAATTTCTGATGA+TGG + chr8_2:59468887-59468906 None:intergenic 40.0%
TCAGAAATTGTGGAGCTACA+AGG - chr8_2:59468890-59468909 Msa1258280:CDS 40.0%
TTGTGCAGAAGTTAGCTGAT+AGG - chr8_2:59469173-59469192 Msa1258280:CDS 40.0%
TTGATAGGAACCAAGAAGAG+AGG - chr8_2:59469242-59469261 Msa1258280:CDS 40.0%
TGATAGGAACCAAGAAGAGA+GGG - chr8_2:59469243-59469262 Msa1258280:CDS 40.0%
!! GGTTATGGGCTTTTGTTTCT+AGG - chr8_2:59469401-59469420 Msa1258280:CDS 40.0%
!!! GTTCCTTGATGCTGATTTTG+TGG - chr8_2:59469423-59469442 Msa1258280:CDS 40.0%
GATGATGTTCCTCCAGAACA+AGG + chr8_2:59467663-59467682 None:intergenic 45.0%
TCAGAGGCAAGAAATGGAGA+TGG + chr8_2:59467711-59467730 None:intergenic 45.0%
GAGTTCTCAGAGGCAAGAAA+TGG + chr8_2:59467717-59467736 None:intergenic 45.0%
GTTATCATGGGAGTTCTCAG+AGG + chr8_2:59467727-59467746 None:intergenic 45.0%
AAGACTTGAAGATGTGGCTG+AGG + chr8_2:59467790-59467809 None:intergenic 45.0%
! TGTGAGAAGCTCTGATCCTT+TGG + chr8_2:59468276-59468295 None:intergenic 45.0%
GTCTTAACCATCTCGTTCTC+AGG + chr8_2:59468839-59468858 None:intergenic 45.0%
AATTGTGGAGCTACAAGGCA+TGG - chr8_2:59468895-59468914 Msa1258280:CDS 45.0%
GCTAACTTCTGCACAAGTGT+TGG + chr8_2:59469169-59469188 None:intergenic 45.0%
GAACCAAGAAGAGAGGGAAT+TGG - chr8_2:59469249-59469268 Msa1258280:CDS 45.0%
GGCATGTCCAAGAAGAAAAG+TGG - chr8_2:59469307-59469326 Msa1258280:CDS 45.0%
GATGATGTTCCTCCAGAACA+AGG + chr8_2:59467663-59467682 None:intergenic 45.0%
TCAGAGGCAAGAAATGGAGA+TGG + chr8_2:59467711-59467730 None:intergenic 45.0%
GAGTTCTCAGAGGCAAGAAA+TGG + chr8_2:59467717-59467736 None:intergenic 45.0%
GTTATCATGGGAGTTCTCAG+AGG + chr8_2:59467727-59467746 None:intergenic 45.0%
AAGACTTGAAGATGTGGCTG+AGG + chr8_2:59467790-59467809 None:intergenic 45.0%
! TGTGAGAAGCTCTGATCCTT+TGG + chr8_2:59468276-59468295 None:intergenic 45.0%
GTCTTAACCATCTCGTTCTC+AGG + chr8_2:59468839-59468858 None:intergenic 45.0%
AATTGTGGAGCTACAAGGCA+TGG - chr8_2:59468895-59468914 Msa1258280:CDS 45.0%
GCTAACTTCTGCACAAGTGT+TGG + chr8_2:59469169-59469188 None:intergenic 45.0%
GAACCAAGAAGAGAGGGAAT+TGG - chr8_2:59469249-59469268 Msa1258280:CDS 45.0%
GGCATGTCCAAGAAGAAAAG+TGG - chr8_2:59469307-59469326 Msa1258280:CDS 45.0%
ATGCAACCACCTTGTTCTGG+AGG - chr8_2:59467651-59467670 Msa1258280:CDS 50.0%
GATGTTCCTCCAGAACAAGG+TGG + chr8_2:59467660-59467679 None:intergenic 50.0%
GAGTCACAGATACTCTACCG+AGG - chr8_2:59468110-59468129 Msa1258280:CDS 50.0%
ATTAGACCACGCAGACTCAG+TGG - chr8_2:59468955-59468974 Msa1258280:CDS 50.0%
TTAGACCACGCAGACTCAGT+GGG - chr8_2:59468956-59468975 Msa1258280:CDS 50.0%
TTCACATCGTGGACCTACAG+TGG - chr8_2:59469105-59469124 Msa1258280:CDS 50.0%
AGGCCAATTCCCTCTCTTCT+TGG + chr8_2:59469255-59469274 None:intergenic 50.0%
! AGAAGAGAGGGAATTGGCCT+TGG - chr8_2:59469255-59469274 Msa1258280:CDS 50.0%
ATGCAACCACCTTGTTCTGG+AGG - chr8_2:59467651-59467670 Msa1258280:CDS 50.0%
GATGTTCCTCCAGAACAAGG+TGG + chr8_2:59467660-59467679 None:intergenic 50.0%
GAGTCACAGATACTCTACCG+AGG - chr8_2:59468110-59468129 Msa1258280:CDS 50.0%
ATTAGACCACGCAGACTCAG+TGG - chr8_2:59468955-59468974 Msa1258280:CDS 50.0%
TTAGACCACGCAGACTCAGT+GGG - chr8_2:59468956-59468975 Msa1258280:CDS 50.0%
TTCACATCGTGGACCTACAG+TGG - chr8_2:59469105-59469124 Msa1258280:CDS 50.0%
AGGCCAATTCCCTCTCTTCT+TGG + chr8_2:59469255-59469274 None:intergenic 50.0%
! AGAAGAGAGGGAATTGGCCT+TGG - chr8_2:59469255-59469274 Msa1258280:CDS 50.0%
CAAGTAGCGAGTAGACGACG+AGG + chr8_2:59468042-59468061 None:intergenic 55.0%
! GAGAGTGCACCGTCAAACTC+TGG - chr8_2:59468794-59468813 Msa1258280:CDS 55.0%
CGCTTCTCCTGAGAACGAGA+TGG - chr8_2:59468829-59468848 Msa1258280:CDS 55.0%
TTAGTCCCACTGAGTCTGCG+TGG + chr8_2:59468964-59468983 None:intergenic 55.0%
CAAGTAGCGAGTAGACGACG+AGG + chr8_2:59468042-59468061 None:intergenic 55.0%
! GAGAGTGCACCGTCAAACTC+TGG - chr8_2:59468794-59468813 Msa1258280:CDS 55.0%
CGCTTCTCCTGAGAACGAGA+TGG - chr8_2:59468829-59468848 Msa1258280:CDS 55.0%
TTAGTCCCACTGAGTCTGCG+TGG + chr8_2:59468964-59468983 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 59467651 59469498 59467651 ID=Msa1258280;Name=Msa1258280
chr8_2 mRNA 59467651 59469498 59467651 ID=Msa1258280-mRNA-1;Parent=Msa1258280;Name=Msa1258280-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|-1|0|1|-1|1|1|0|615
chr8_2 exon 59467651 59469498 59467651 ID=Msa1258280-mRNA-1:exon:18477;Parent=Msa1258280-mRNA-1
chr8_2 CDS 59467651 59469498 59467651 ID=Msa1258280-mRNA-1:cds;Parent=Msa1258280-mRNA-1
Gene Sequence

>Msa1258280

ATGCAACCACCTTGTTCTGGAGGAACATCATCACAACCCTGTTTCAATGGTTGTTTTCCATCTCCATTTCTTGCCTCTGAGAACTCCCATGATAACACTTCCAATTCAAATAGTGTCAGTAAAAATGATGACTTAGCCTCAGCCACATCTTCAAGTCTTTATCCCAACACACATTTCACAAACCATGAATCTCTCCCACATTTACAAGACTCATATAATAACTTCATCAAATCATTCCCTCAATTTTCCACAACTTCTCAAGTAGATCAAATTCGAGATCAAGAATATCAACACTTGAATAGTCTTTCCAATACATGTTTTGATTACACTGGTTATGGTCTTTTCTCTTATGCTCAGCAGAACCAAAAATCATGTTCTTATTCATCTTCCTCGTCGTCTACTCGCTACTTGAACTTAGAACAATCGTTCTTTGATGTATCGATTAAGTCAATGAATTTGGAGTCACAGATACTCTACCGAGGACAAGAATCAGAACTAGAGTCAAGAATGAGAGAAAGAATAATGACATTTATGAATGTCTCTGAAACCGATTACGCCTTAGTTTTCATTGCTAATGAGGTATCTGCTTTTAAACTTGTATCTGATTCATTTCTATTTCAATCCAAAGGATCAGAGCTTCTCACAGTGTATGATCATAGCAATGAGGCATTGGAAATGATGATTGATAGTTGCAAGAAGCAAGGAGTGCAAATTTTATCAGCAGAATTCACATGGTCCAATTTAGGAATTGAATGGAGAAAACTAAAGAAGATGATAACATGTAAAAAGGAGAAGAGAAAAGGTAGTTTATTTGTTTTTCCACTTTATTCAAAGGTTACTGGATCACCATATTCTTATTTTTGGATGTCTTTGGCACAAGAAAATGGTTGGTGTGTAATGCTTGATTTATGTGCATTGAGACCAAAAGAAAGAGACACTTTAGGTATGTCTATGTTTAAACCTGATTTTATGGTTTGTTCATTTTACAAAATCTTTGGTGAAAATCCATCTGGATTTGGTTGTTTATTTGTCAAAAAATCAAGTATTTCTTCACTTAAAGATTTAGGAAATGCTACAAGCATGGGAATTATAAGTCTTGTTCCTACATTTGCACAATGTCACACTTCTAGCTCTCGTCAAAATGAGAGTGCACCGTCAAACTCTGGATTATTAGGATTCGCTTCTCCTGAGAACGAGATGGTTAAGACTAAAGAAGAGCAAAATGAGGTATCACCATCATCAGAAATTGTGGAGCTACAAGGCATGGAGATGAATGATGAAAGATTGGAAATTGAGTGTAGAGGATTAGACCACGCAGACTCAGTGGGACTAATAGTGATTAGTACAAGAACAAGATATTTGATTAATTGGCTTGTTAATGCATTAATGAGTCTTCAACATCCACATGATGAAAATAGATTTTCATTAATTAGAATCTATGGGCCAAAAATAAATTCACATCGTGGACCTACAGTGGCATTTAATATATTTGACTGGAAAGGAGAAAAGATTGATCCAACACTTGTGCAGAAGTTAGCTGATAGGAATAATATCTCTCTAAGCAGGTCCTGTTTGAAAAATATCAAGTTCTTTGATAGGAACCAAGAAGAGAGGGAATTGGCCTTGGAAACTAAAGCAAATGAAGTTGAAAAGTTAGGCATGTCCAAGAAGAAAAGTGGCTCAAATGAGTATAGGATATTGGTTTTGACTGCAACATTGGGCTTCTTGACAAACTATGAAGATGTTTATAGGTTATGGGCTTTTGTTTCTAGGTTCCTTGATGCTGATTTTGTGGAAAAAGAGAGATGGAGATACATTGCTCTAAATCAAAAAACTATTGAAGTGTGA

Protein sequence

>Msa1258280

MQPPCSGGTSSQPCFNGCFPSPFLASENSHDNTSNSNSVSKNDDLASATSSSLYPNTHFTNHESLPHLQDSYNNFIKSFPQFSTTSQVDQIRDQEYQHLNSLSNTCFDYTGYGLFSYAQQNQKSCSYSSSSSSTRYLNLEQSFFDVSIKSMNLESQILYRGQESELESRMRERIMTFMNVSETDYALVFIANEVSAFKLVSDSFLFQSKGSELLTVYDHSNEALEMMIDSCKKQGVQILSAEFTWSNLGIEWRKLKKMITCKKEKRKGSLFVFPLYSKVTGSPYSYFWMSLAQENGWCVMLDLCALRPKERDTLGMSMFKPDFMVCSFYKIFGENPSGFGCLFVKKSSISSLKDLGNATSMGIISLVPTFAQCHTSSSRQNESAPSNSGLLGFASPENEMVKTKEEQNEVSPSSEIVELQGMEMNDERLEIECRGLDHADSVGLIVISTRTRYLINWLVNALMSLQHPHDENRFSLIRIYGPKINSHRGPTVAFNIFDWKGEKIDPTLVQKLADRNNISLSRSCLKNIKFFDRNQEERELALETKANEVEKLGMSKKKSGSNEYRILVLTATLGFLTNYEDVYRLWAFVSRFLDADFVEKERWRYIALNQKTIEV*