AlfalfaGEDB | Msa1298290

M. sativa cultivar zhongmu-4 / Msa1298290

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1298290	XP_013457666.1	94.797	615	32	0	1	615	1	615	0.0	1196

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1298290	A0A072UPS3	94.797	615	32	0	1	615	1	615	0.0	1196

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0004350	Msa1298290	0.842615	2.320245e-58	-8.615850e-47
Msa0006050	Msa1298290	0.806181	9.316038e-50	-8.615850e-47
Msa0006700	Msa1298290	0.871775	5.286083e-67	-8.615850e-47
Msa0007230	Msa1298290	0.816581	5.137503e-52	-8.615850e-47
Msa0008850	Msa1298290	0.820790	5.692552e-53	-8.615850e-47
Msa0012780	Msa1298290	-0.853654	2.072029e-61	-8.615850e-47
Msa0012820	Msa1298290	-0.837223	5.901712e-57	-8.615850e-47
Msa0014790	Msa1298290	0.812421	4.275037e-51	-8.615850e-47
Msa0017420	Msa1298290	0.808157	3.554362e-50	-8.615850e-47
Msa0020630	Msa1298290	0.873178	1.798026e-67	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1298290	MtrunA17_Chr4g0057211	94.797	615	32	0	1	615	1	615	0.0	1196
Msa1298290	MtrunA17_Chr1g0203981	49.142	641	274	14	12	610	8	638	0.0	578
Msa1298290	MtrunA17_Chr6g0474301	47.913	647	277	15	6	615	5	628	0.0	561
Msa1298290	MtrunA17_Chr8g0374071	36.723	354	190	8	31	370	68	401	1.09e-71	248
Msa1298290	MtrunA17_Chr8g0374071	40.000	205	115	5	398	598	725	925	1.38e-35	143
Msa1298290	MtrunA17_Chr8g0374091	37.309	327	179	6	50	370	95	401	2.13e-71	248
Msa1298290	MtrunA17_Chr8g0374091	38.725	204	119	4	398	598	721	921	2.73e-35	142

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1298290	AT5G51920.1	44.209	613	276	12	1	604	1	556	1.49e-165	485
Msa1298290	AT4G22980.1	39.409	609	301	12	10	610	9	557	5.89e-136	409
Msa1298290	AT5G66950.1	40.367	327	170	6	50	370	93	400	4.69e-75	257
Msa1298290	AT5G66950.1	42.703	185	91	4	421	600	681	855	3.09e-35	142
Msa1298290	AT2G23520.1	38.532	327	176	6	50	370	95	402	1.38e-73	253
Msa1298290	AT2G23520.1	37.438	203	116	4	406	597	674	876	3.81e-30	127
Msa1298290	AT4G37100.1	36.612	366	196	9	63	421	110	446	2.85e-73	253
Msa1298290	AT4G37100.1	41.808	177	96	4	423	597	704	875	1.05e-33	138
Msa1298290	AT1G16540.2	21.793	569	310	23	75	589	4	491	3.77e-13	73.2
Msa1298290	AT1G16540.1	21.793	569	310	23	75	589	4	491	5.88e-13	72.4

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Find 91 sgRNAs with CRISPR-Local

Find 226 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATATCAAGTTCTTTGAT+AGG	0.352408	8_3:-59102500	Msa1298290:CDS
AAAATGCAACCACCATGTTC+TGG	0.372071	8_3:-59104079	Msa1298290:CDS
AAAGTGGCTCAAATGAGTAT+AGG	0.526368	8_3:-59102404	Msa1298290:CDS
AAGACTTGAAGATGTGGCTG+AGG	0.577054	8_3:+59103940	None:intergenic
AAGTCACAGATACTCTACCG+AGG	0.761105	8_3:-59103617	Msa1298290:CDS
AATAAACAACCAAATCCAGA+TGG	0.590992	8_3:+59103071	None:intergenic
AATATATTAAATGCCACTGT+AGG	0.551745	8_3:+59102609	None:intergenic
AATGAAAACTAAGGCGTAAT+CGG	0.417763	8_3:+59103529	None:intergenic
AATGAACAAACCATAAAATC+AGG	0.451423	8_3:+59103116	None:intergenic
AATTGTGGAGCTACAAGGCA+TGG	0.566632	8_3:-59102832	Msa1298290:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATGAAAACTAAGGCGTAAT+CGG	+	chr8_3:59102801-59102820	None:intergenic	30.0%
CTCATTAGCAATGAAAACTA+AGG	+	chr8_3:59102810-59102829	None:intergenic	30.0%
TCTCCATTCAATTCCTAAAT+TGG	+	chr8_3:59102990-59103009	None:intergenic	30.0%
TGTAAAAAGGAGAAGAGAAA+AGG	-	chr8_3:59103031-59103050	Msa1298290:CDS	30.0%
AATAAACAACCAAATCCAGA+TGG	+	chr8_3:59103259-59103278	None:intergenic	30.0%
CCAAAAATAAATTCACATCG+TGG	-	chr8_3:59103694-59103713	Msa1298290:CDS	30.0%
GCAAATGAAGTTGAAAAGTT+AGG	-	chr8_3:59103886-59103905	Msa1298290:CDS	30.0%
CTCAAATGAGTATAGGATAT+TGG	-	chr8_3:59103930-59103949	Msa1298290:CDS	30.0%
AATGAAAACTAAGGCGTAAT+CGG	+	chr8_3:59102801-59102820	None:intergenic	30.0%
CTCATTAGCAATGAAAACTA+AGG	+	chr8_3:59102810-59102829	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_3	gene	59102251	59104098	59102251	ID=Msa1298290;Name=Msa1298290
chr8_3	mRNA	59102251	59104098	59102251	ID=Msa1298290-mRNA-1;Parent=Msa1298290;Name=Msa1298290-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|615
chr8_3	exon	59102251	59104098	59102251	ID=Msa1298290-mRNA-1:exon:17063;Parent=Msa1298290-mRNA-1
chr8_3	CDS	59102251	59104098	59102251	ID=Msa1298290-mRNA-1:cds;Parent=Msa1298290-mRNA-1

Gene Sequence

>Msa1298290

ATGCAACCACCATGTTCTGGAGGAACATCATCACAACCCTGTTTCAATGGTTGTTTTCCATCTCCATTTCTTGCCTCTGAGAACTCCCATGATAACACTTCCAATTCAAATAGTGTCAGTAAAAATGATGACTTAGCCTCAGCCACATCTTCAAGTCTTTATCCCAACACACATTTCACAAACCATGAATCTCTCCCACATTTACAAGACTCATATAATAACTTCATCAAATCATTCCCTCAATTTTCCACAACTTCTCAAGTAGATCAAATTCGAGATCAAGAATATCAACACTTGAATAGTCTTTCCAATACATGTTTTGATTACACTGGTTATGGTCTTTTCTCTTATGCTCAGCAGAACCAAAAATCATGTTCTTATTCATCTTCCTCGTCGTCTACTCGCTACTTGAACTTAGAACAATCGTTCTTTGATGTATCGATTAAGTCAATGAATTTGAAGTCACAGATACTCTACCGAGGACAAGAATCAGAACTAGAGTCAAGAATGAGAGAAAGAATAATGACATTTATGAATGTCTCTGAAACCGATTACGCCTTAGTTTTCATTGCTAATGAGGTATCTGCTTTTAAACTTGTATCTGATTCATTTCTATTTCAATCCAAAGGATCAGAGCTTCTCACAGTGTATGATCATAGCAATGAGGCATTGGAAATGATGATTGATAGTTGCAAGAAGCAAGGAGTGCAAATTTTATCAGCAGAATTCACATGGTCCAATTTAGGAATTGAATGGAGAAAACTAAAGAAGATGATAACATGTAAAAAGGAGAAGAGAAAAGGTAGTTTATTTGTTTTTCCACTTTATTCAAAGGTTACTGGATCACCATATTCTTATTTTTGGATGTCTTTGGCACAAGAAAATGGTTGGTGTGTAATGCTTGATTTATGTGCATTGAGACCAAAAGAAAGAGACACTTTAGGTATGTCTATGTTTAAACCTGATTTTATGGTTTGTTCATTTTACAAAATCTTTGGTGAAAATCCATCTGGATTTGGTTGTTTATTTGTCAAAAAATCAAGTATTTCTTCACTTAAAGATTTAGGAAATGCTACAAGCATGGGAATTATAAGTCTTGTTCCTACATTTGCACAATGTCACACTTCTAGCTCTCGTCAAAATGAGAGTGCACCGTCAAACTCTGGATTATTAGGATTCGCTTCTCCTGAGAACGAGATGGTTAAGACTAAAGAAGAGCAAAATGAGGTATCACCATCATCAGAAATTGTGGAGCTACAAGGCATGGAGATGAATGATGAAAGATTGGAAATTGAGTGTAGAGGATTAGACCACGCAGACTCAGTGGGACTAATAGTGATTAGTACAAGAACAAGATATTTGATTAATTGGCTTGTTAATGCATTAATGAGTCTTCAACATCCACATGATGAAAATAGATTTTCATTAATTAGAATCTATGGGCCAAAAATAAATTCACATCGTGGACCTACAGTGGCATTTAATATATTTGACTGGAAAGGAGAAAAGATTGATCCAACACTTGTGCAGAAGTTAGCTGATAGGAATAATATCTCTCTAAGCAGGTCCTGTTTGAAAAATATCAAGTTCTTTGATAGGAACCAAGAAGAGAGGGAATTGGCCTTGGAAACTAAAGCAAATGAAGTTGAAAAGTTAGGCATGTCCAAGAAGAAAAGTGGCTCAAATGAGTATAGGATATTGGTTTTGACTGCAACATTGGGCTTCTTGACAAACTATGAAGATGTTTATAGGTTATGGGCTTTTGTTTCTAGGTTCCTTGATGCTGATTTTGTGGAAAAAGAGAGATGGAGATACATTGCTCTAAATCAAAAAACTATTGAAGTGTGA

Protein sequence

>Msa1298290

MQPPCSGGTSSQPCFNGCFPSPFLASENSHDNTSNSNSVSKNDDLASATSSSLYPNTHFTNHESLPHLQDSYNNFIKSFPQFSTTSQVDQIRDQEYQHLNSLSNTCFDYTGYGLFSYAQQNQKSCSYSSSSSSTRYLNLEQSFFDVSIKSMNLKSQILYRGQESELESRMRERIMTFMNVSETDYALVFIANEVSAFKLVSDSFLFQSKGSELLTVYDHSNEALEMMIDSCKKQGVQILSAEFTWSNLGIEWRKLKKMITCKKEKRKGSLFVFPLYSKVTGSPYSYFWMSLAQENGWCVMLDLCALRPKERDTLGMSMFKPDFMVCSFYKIFGENPSGFGCLFVKKSSISSLKDLGNATSMGIISLVPTFAQCHTSSSRQNESAPSNSGLLGFASPENEMVKTKEEQNEVSPSSEIVELQGMEMNDERLEIECRGLDHADSVGLIVISTRTRYLINWLVNALMSLQHPHDENRFSLIRIYGPKINSHRGPTVAFNIFDWKGEKIDPTLVQKLADRNNISLSRSCLKNIKFFDRNQEERELALETKANEVEKLGMSKKKSGSNEYRILVLTATLGFLTNYEDVYRLWAFVSRFLDADFVEKERWRYIALNQKTIEV*