AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1298290


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1298290 MtrunA17_Chr4g0057211 94.797 615 32 0 1 615 1 615 0.0 1196
Msa1298290 MtrunA17_Chr1g0203981 49.142 641 274 14 12 610 8 638 0.0 578
Msa1298290 MtrunA17_Chr6g0474301 47.913 647 277 15 6 615 5 628 0.0 561
Msa1298290 MtrunA17_Chr8g0374071 36.723 354 190 8 31 370 68 401 1.09e-71 248
Msa1298290 MtrunA17_Chr8g0374071 40.000 205 115 5 398 598 725 925 1.38e-35 143
Msa1298290 MtrunA17_Chr8g0374091 37.309 327 179 6 50 370 95 401 2.13e-71 248
Msa1298290 MtrunA17_Chr8g0374091 38.725 204 119 4 398 598 721 921 2.73e-35 142
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1298290 AT5G51920.1 44.209 613 276 12 1 604 1 556 1.49e-165 485
Msa1298290 AT4G22980.1 39.409 609 301 12 10 610 9 557 5.89e-136 409
Msa1298290 AT5G66950.1 40.367 327 170 6 50 370 93 400 4.69e-75 257
Msa1298290 AT5G66950.1 42.703 185 91 4 421 600 681 855 3.09e-35 142
Msa1298290 AT2G23520.1 38.532 327 176 6 50 370 95 402 1.38e-73 253
Msa1298290 AT2G23520.1 37.438 203 116 4 406 597 674 876 3.81e-30 127
Msa1298290 AT4G37100.1 36.612 366 196 9 63 421 110 446 2.85e-73 253
Msa1298290 AT4G37100.1 41.808 177 96 4 423 597 704 875 1.05e-33 138
Msa1298290 AT1G16540.2 21.793 569 310 23 75 589 4 491 3.77e-13 73.2
Msa1298290 AT1G16540.1 21.793 569 310 23 75 589 4 491 5.88e-13 72.4
Msa1298290 AT1G16540.3 21.793 569 310 23 75 589 4 491 7.27e-13 72.4

Find 91 sgRNAs with CRISPR-Local

Find 226 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAACAAGATATTTGATTAAT+TGG 0.155783 8_3:-59102728 Msa1298290:CDS
TCTCCATTCAATTCCTAAAT+TGG 0.170825 8_3:+59103340 None:intergenic
ATTTCTTCACTTAAAGATTT+AGG 0.176964 8_3:-59103032 Msa1298290:CDS
CCGTCAAACTCTGGATTATT+AGG 0.217004 8_3:-59102924 Msa1298290:CDS
CCACTTTATTCAAAGGTTAC+TGG 0.222847 8_3:-59103257 Msa1298290:CDS
CAAACTATGAAGATGTTTAT+AGG 0.228960 8_3:-59102347 Msa1298290:CDS
GAATTCACATGGTCCAATTT+AGG 0.230968 8_3:-59103353 Msa1298290:CDS
CCTAAAGTGTCTCTTTCTTT+TGG 0.243729 8_3:+59103155 None:intergenic
ATGAAGATGTTTATAGGTTA+TGG 0.244282 8_3:-59102341 Msa1298290:CDS
AGGCCAATTCCCTCTCTTCT+TGG 0.281938 8_3:+59102475 None:intergenic
GAAGATGATAACATGTAAAA+AGG 0.297027 8_3:-59103309 Msa1298290:CDS
TGAAGATGTTTATAGGTTAT+GGG 0.323284 8_3:-59102340 Msa1298290:CDS
TGTGAGAAGCTCTGATCCTT+TGG 0.342674 8_3:+59103454 None:intergenic
AAAATATCAAGTTCTTTGAT+AGG 0.352408 8_3:-59102500 Msa1298290:CDS
TGGAAAACAACCATTGAAAC+AGG 0.356867 8_3:+59104039 None:intergenic
ATGTCTTTGGCACAAGAAAA+TGG 0.362723 8_3:-59103212 Msa1298290:CDS
GGTGAAAATCCATCTGGATT+TGG 0.362913 8_3:-59103080 Msa1298290:CDS
CTCAAATGAGTATAGGATAT+TGG 0.368511 8_3:-59102397 Msa1298290:CDS
AAAATGCAACCACCATGTTC+TGG 0.372071 8_3:-59104079 Msa1298290:CDS
TTTACTGACACTATTTGAAT+TGG 0.373946 8_3:+59103976 None:intergenic
GCAAATGAAGTTGAAAAGTT+AGG 0.395110 8_3:-59102441 Msa1298290:CDS
GTCTTAACCATCTCGTTCTC+AGG 0.402171 8_3:+59102891 None:intergenic
AGTGTAATCAAAACATGTAT+TGG 0.413697 8_3:+59103769 None:intergenic
AATGAAAACTAAGGCGTAAT+CGG 0.417763 8_3:+59103529 None:intergenic
CCAGTAACCTTTGAATAAAG+TGG 0.420797 8_3:+59103257 None:intergenic
ATCTTTGGTGAAAATCCATC+TGG 0.432099 8_3:-59103086 Msa1298290:CDS
GTAAATGTGGGAGAGATTCA+TGG 0.432348 8_3:+59103894 None:intergenic
TTGAATTGGAAGTGTTATCA+TGG 0.434250 8_3:+59103990 None:intergenic
TCATCACAACCCTGTTTCAA+TGG 0.435276 8_3:-59104049 Msa1298290:CDS
GGAGATGAATGATGAAAGAT+TGG 0.441255 8_3:-59102811 Msa1298290:CDS
TGAGAAGTTGTGGAAAATTG+AGG 0.444472 8_3:+59103839 None:intergenic
AGAAGAGAGGGAATTGGCCT+TGG 0.450623 8_3:-59102472 Msa1298290:CDS
AATGAACAAACCATAAAATC+AGG 0.451423 8_3:+59103116 None:intergenic
GGTCCAATTTAGGAATTGAA+TGG 0.456840 8_3:-59103343 Msa1298290:CDS
TTCATTTGCTTTAGTTTCCA+AGG 0.465141 8_3:+59102455 None:intergenic
TTGATCTACTTGAGAAGTTG+TGG 0.473181 8_3:+59103829 None:intergenic
GAGAAGTTGTGGAAAATTGA+GGG 0.473696 8_3:+59103840 None:intergenic
TGGTTTGTGAAATGTGTGTT+GGG 0.475864 8_3:+59103914 None:intergenic
GAACCAAGAAGAGAGGGAAT+TGG 0.478067 8_3:-59102478 Msa1298290:CDS
AGCTCCACAATTTCTGATGA+TGG 0.487761 8_3:+59102843 None:intergenic
CCTAATAATCCAGAGTTTGA+CGG 0.487873 8_3:+59102924 None:intergenic
CCAAAAGAAAGAGACACTTT+AGG 0.489254 8_3:-59103155 Msa1298290:CDS
GAGTTCTCAGAGGCAAGAAA+TGG 0.491382 8_3:+59104013 None:intergenic
TGATCATAGCAATGAGGCAT+TGG 0.493736 8_3:-59103426 Msa1298290:CDS
TTTCATTAATTAGAATCTAT+GGG 0.496665 8_3:-59102656 Msa1298290:CDS
GAGAGTGCACCGTCAAACTC+TGG 0.498403 8_3:-59102933 Msa1298290:CDS
CTCATTAGCAATGAAAACTA+AGG 0.499860 8_3:+59103520 None:intergenic
TGGCATTTAATATATTTGAC+TGG 0.501389 8_3:-59102602 Msa1298290:CDS
TTTCCACAAAATCAGCATCA+AGG 0.507755 8_3:+59102301 None:intergenic
ATGGTTTGTGAAATGTGTGT+TGG 0.508371 8_3:+59103913 None:intergenic
TTTAATATATTTGACTGGAA+AGG 0.511917 8_3:-59102597 Msa1298290:CDS
TTGTGCAGAAGTTAGCTGAT+AGG 0.513041 8_3:-59102554 Msa1298290:CDS
GGAATAATATCTCTCTAAGC+AGG 0.516126 8_3:-59102533 Msa1298290:CDS
GCTAACTTCTGCACAAGTGT+TGG 0.523200 8_3:+59102561 None:intergenic
TTATATGAGTCTTGTAAATG+TGG 0.525845 8_3:+59103881 None:intergenic
AAAGTGGCTCAAATGAGTAT+AGG 0.526368 8_3:-59102404 Msa1298290:CDS
TCATTTCTATTTCAATCCAA+AGG 0.532256 8_3:-59103470 Msa1298290:CDS
TATATGAGTCTTGTAAATGT+GGG 0.535373 8_3:+59103882 None:intergenic
TTTAGGAAATGCTACAAGCA+TGG 0.536864 8_3:-59103015 Msa1298290:CDS
CTAGTTCTGATTCTTGTCCT+CGG 0.537895 8_3:+59103600 None:intergenic
TTAGGAAATGCTACAAGCAT+GGG 0.540646 8_3:-59103014 Msa1298290:CDS
TGAATTGGAAGTGTTATCAT+GGG 0.542936 8_3:+59103991 None:intergenic
ATCACCATCATCAGAAATTG+TGG 0.551638 8_3:-59102847 Msa1298290:CDS
AATATATTAAATGCCACTGT+AGG 0.551745 8_3:+59102609 None:intergenic
AATTGTGGAGCTACAAGGCA+TGG 0.566632 8_3:-59102832 Msa1298290:CDS
TCAGAAATTGTGGAGCTACA+AGG 0.567806 8_3:-59102837 Msa1298290:CDS
GGCATGTCCAAGAAGAAAAG+TGG 0.570932 8_3:-59102420 Msa1298290:CDS
AAGACTTGAAGATGTGGCTG+AGG 0.577054 8_3:+59103940 None:intergenic
TTGATAGGAACCAAGAAGAG+AGG 0.577292 8_3:-59102485 Msa1298290:CDS
CGCTTCTCCTGAGAACGAGA+TGG 0.584335 8_3:-59102898 Msa1298290:CDS
TGATAGGAACCAAGAAGAGA+GGG 0.586492 8_3:-59102484 Msa1298290:CDS
AATAAACAACCAAATCCAGA+TGG 0.590992 8_3:+59103071 None:intergenic
TCAGAGGCAAGAAATGGAGA+TGG 0.596800 8_3:+59104019 None:intergenic
GACTAAAGAAGAGCAAAATG+AGG 0.605972 8_3:-59102871 Msa1298290:CDS
CTTTGGCACAAGAAAATGGT+TGG 0.615852 8_3:-59103208 Msa1298290:CDS
ATTGATAGTTGCAAGAAGCA+AGG 0.622439 8_3:-59103395 Msa1298290:CDS
GTGTGACATTGTGCAAATGT+AGG 0.624324 8_3:+59102975 None:intergenic
TTAGACCACGCAGACTCAGT+GGG 0.643409 8_3:-59102771 Msa1298290:CDS
GATGATGTTCCTCCAGAACA+TGG 0.646154 8_3:+59104067 None:intergenic
TTCACATCGTGGACCTACAG+TGG 0.650419 8_3:-59102622 Msa1298290:CDS
AGATTGGAAATTGAGTGTAG+AGG 0.650792 8_3:-59102795 Msa1298290:CDS
ATTAGACCACGCAGACTCAG+TGG 0.651262 8_3:-59102772 Msa1298290:CDS
ATGCAACCACCATGTTCTGG+AGG 0.655118 8_3:-59104076 Msa1298290:CDS
CAAGTAGCGAGTAGACGACG+AGG 0.680933 8_3:+59103688 None:intergenic
TTAGTCCCACTGAGTCTGCG+TGG 0.687077 8_3:+59102766 None:intergenic
AGTGTATGATCATAGCAATG+AGG 0.687969 8_3:-59103432 Msa1298290:CDS
GGGATAAAGACTTGAAGATG+TGG 0.694505 8_3:+59103934 None:intergenic
GGAAAACAACCATTGAAACA+GGG 0.697784 8_3:+59104040 None:intergenic
GTTATCATGGGAGTTCTCAG+AGG 0.702910 8_3:+59104003 None:intergenic
AAGTCACAGATACTCTACCG+AGG 0.761105 8_3:-59103617 Msa1298290:CDS
GATGTTCCTCCAGAACATGG+TGG 0.790301 8_3:+59104070 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTCATTAATTAGAATCTA+TGG - chr8_3:59103670-59103689 Msa1298290:CDS 15.0%
!! TTTCATTAATTAGAATCTAT+GGG - chr8_3:59103671-59103690 Msa1298290:CDS 15.0%
!!! TTTTCATTAATTAGAATCTA+TGG - chr8_3:59103670-59103689 Msa1298290:CDS 15.0%
!! TTTCATTAATTAGAATCTAT+GGG - chr8_3:59103671-59103690 Msa1298290:CDS 15.0%
!!! ATGAATAAGAACATGATTTT+TGG + chr8_3:59102616-59102635 None:intergenic 20.0%
!!! TATGTTTAAACCTGATTTTA+TGG - chr8_3:59103201-59103220 Msa1298290:CDS 20.0%
!!! TGTTCATTTTACAAAATCTT+TGG - chr8_3:59103226-59103245 Msa1298290:CDS 20.0%
!! ATTTCTTCACTTAAAGATTT+AGG - chr8_3:59103295-59103314 Msa1298290:CDS 20.0%
!! GAACAAGATATTTGATTAAT+TGG - chr8_3:59103599-59103618 Msa1298290:CDS 20.0%
!! TTTAATATATTTGACTGGAA+AGG - chr8_3:59103730-59103749 Msa1298290:CDS 20.0%
!! AAAATATCAAGTTCTTTGAT+AGG - chr8_3:59103827-59103846 Msa1298290:CDS 20.0%
!!! ATGAATAAGAACATGATTTT+TGG + chr8_3:59102616-59102635 None:intergenic 20.0%
!!! TATGTTTAAACCTGATTTTA+TGG - chr8_3:59103201-59103220 Msa1298290:CDS 20.0%
!!! TGTTCATTTTACAAAATCTT+TGG - chr8_3:59103226-59103245 Msa1298290:CDS 20.0%
!! ATTTCTTCACTTAAAGATTT+AGG - chr8_3:59103295-59103314 Msa1298290:CDS 20.0%
!! GAACAAGATATTTGATTAAT+TGG - chr8_3:59103599-59103618 Msa1298290:CDS 20.0%
!! TTTAATATATTTGACTGGAA+AGG - chr8_3:59103730-59103749 Msa1298290:CDS 20.0%
!! AAAATATCAAGTTCTTTGAT+AGG - chr8_3:59103827-59103846 Msa1298290:CDS 20.0%
! TTTACTGACACTATTTGAAT+TGG + chr8_3:59102354-59102373 None:intergenic 25.0%
!! TATATGAGTCTTGTAAATGT+GGG + chr8_3:59102448-59102467 None:intergenic 25.0%
!! TTATATGAGTCTTGTAAATG+TGG + chr8_3:59102449-59102468 None:intergenic 25.0%
! AGTGTAATCAAAACATGTAT+TGG + chr8_3:59102561-59102580 None:intergenic 25.0%
!!! AATACATGTTTTGATTACAC+TGG - chr8_3:59102560-59102579 Msa1298290:CDS 25.0%
! TCATTTCTATTTCAATCCAA+AGG - chr8_3:59102857-59102876 Msa1298290:CDS 25.0%
! GAAGATGATAACATGTAAAA+AGG - chr8_3:59103018-59103037 Msa1298290:CDS 25.0%
!! TGTTTTTCCACTTTATTCAA+AGG - chr8_3:59103063-59103082 Msa1298290:CDS 25.0%
!!! GATCACCATATTCTTATTTT+TGG - chr8_3:59103092-59103111 Msa1298290:CDS 25.0%
! GACATCCAAAAATAAGAATA+TGG + chr8_3:59103100-59103119 None:intergenic 25.0%
!!! TTCTTATTTTTGGATGTCTT+TGG - chr8_3:59103102-59103121 Msa1298290:CDS 25.0%
! AATGAACAAACCATAAAATC+AGG + chr8_3:59103214-59103233 None:intergenic 25.0%
!! GAAAATCTATTTTCATCATG+TGG + chr8_3:59103655-59103674 None:intergenic 25.0%
! AATATATTAAATGCCACTGT+AGG + chr8_3:59103721-59103740 None:intergenic 25.0%
! TGGCATTTAATATATTTGAC+TGG - chr8_3:59103725-59103744 Msa1298290:CDS 25.0%
!!! GAACTTGATATTTTTCAAAC+AGG + chr8_3:59103821-59103840 None:intergenic 25.0%
! CAAACTATGAAGATGTTTAT+AGG - chr8_3:59103980-59103999 Msa1298290:CDS 25.0%
! ATGAAGATGTTTATAGGTTA+TGG - chr8_3:59103986-59104005 Msa1298290:CDS 25.0%
! TGAAGATGTTTATAGGTTAT+GGG - chr8_3:59103987-59104006 Msa1298290:CDS 25.0%
! TTTACTGACACTATTTGAAT+TGG + chr8_3:59102354-59102373 None:intergenic 25.0%
!! TATATGAGTCTTGTAAATGT+GGG + chr8_3:59102448-59102467 None:intergenic 25.0%
!! TTATATGAGTCTTGTAAATG+TGG + chr8_3:59102449-59102468 None:intergenic 25.0%
! AGTGTAATCAAAACATGTAT+TGG + chr8_3:59102561-59102580 None:intergenic 25.0%
!!! AATACATGTTTTGATTACAC+TGG - chr8_3:59102560-59102579 Msa1298290:CDS 25.0%
! TCATTTCTATTTCAATCCAA+AGG - chr8_3:59102857-59102876 Msa1298290:CDS 25.0%
! GAAGATGATAACATGTAAAA+AGG - chr8_3:59103018-59103037 Msa1298290:CDS 25.0%
!! TGTTTTTCCACTTTATTCAA+AGG - chr8_3:59103063-59103082 Msa1298290:CDS 25.0%
!!! GATCACCATATTCTTATTTT+TGG - chr8_3:59103092-59103111 Msa1298290:CDS 25.0%
! GACATCCAAAAATAAGAATA+TGG + chr8_3:59103100-59103119 None:intergenic 25.0%
!!! TTCTTATTTTTGGATGTCTT+TGG - chr8_3:59103102-59103121 Msa1298290:CDS 25.0%
! AATGAACAAACCATAAAATC+AGG + chr8_3:59103214-59103233 None:intergenic 25.0%
!! GAAAATCTATTTTCATCATG+TGG + chr8_3:59103655-59103674 None:intergenic 25.0%
! AATATATTAAATGCCACTGT+AGG + chr8_3:59103721-59103740 None:intergenic 25.0%
! TGGCATTTAATATATTTGAC+TGG - chr8_3:59103725-59103744 Msa1298290:CDS 25.0%
!!! GAACTTGATATTTTTCAAAC+AGG + chr8_3:59103821-59103840 None:intergenic 25.0%
! CAAACTATGAAGATGTTTAT+AGG - chr8_3:59103980-59103999 Msa1298290:CDS 25.0%
! ATGAAGATGTTTATAGGTTA+TGG - chr8_3:59103986-59104005 Msa1298290:CDS 25.0%
! TGAAGATGTTTATAGGTTAT+GGG - chr8_3:59103987-59104006 Msa1298290:CDS 25.0%
!! TGAATTGGAAGTGTTATCAT+GGG + chr8_3:59102339-59102358 None:intergenic 30.0%
!! TTGAATTGGAAGTGTTATCA+TGG + chr8_3:59102340-59102359 None:intergenic 30.0%
!!! TGTTTTGATTACACTGGTTA+TGG - chr8_3:59102566-59102585 Msa1298290:CDS 30.0%
AATGAAAACTAAGGCGTAAT+CGG + chr8_3:59102801-59102820 None:intergenic 30.0%
CTCATTAGCAATGAAAACTA+AGG + chr8_3:59102810-59102829 None:intergenic 30.0%
!! CTTAGTTTTCATTGCTAATG+AGG - chr8_3:59102808-59102827 Msa1298290:CDS 30.0%
! TTTTATCAGCAGAATTCACA+TGG - chr8_3:59102963-59102982 Msa1298290:CDS 30.0%
TCTCCATTCAATTCCTAAAT+TGG + chr8_3:59102990-59103009 None:intergenic 30.0%
TGTAAAAAGGAGAAGAGAAA+AGG - chr8_3:59103031-59103050 Msa1298290:CDS 30.0%
AATAAACAACCAAATCCAGA+TGG + chr8_3:59103259-59103278 None:intergenic 30.0%
!! CCACGATGTGAATTTATTTT+TGG + chr8_3:59103697-59103716 None:intergenic 30.0%
CCAAAAATAAATTCACATCG+TGG - chr8_3:59103694-59103713 Msa1298290:CDS 30.0%
! TTCATTTGCTTTAGTTTCCA+AGG + chr8_3:59103875-59103894 None:intergenic 30.0%
GCAAATGAAGTTGAAAAGTT+AGG - chr8_3:59103886-59103905 Msa1298290:CDS 30.0%
CTCAAATGAGTATAGGATAT+TGG - chr8_3:59103930-59103949 Msa1298290:CDS 30.0%
! ATTTTGTGGAAAAAGAGAGA+TGG - chr8_3:59104037-59104056 Msa1298290:CDS 30.0%
!! TGAATTGGAAGTGTTATCAT+GGG + chr8_3:59102339-59102358 None:intergenic 30.0%
!! TTGAATTGGAAGTGTTATCA+TGG + chr8_3:59102340-59102359 None:intergenic 30.0%
!!! TGTTTTGATTACACTGGTTA+TGG - chr8_3:59102566-59102585 Msa1298290:CDS 30.0%
AATGAAAACTAAGGCGTAAT+CGG + chr8_3:59102801-59102820 None:intergenic 30.0%
CTCATTAGCAATGAAAACTA+AGG + chr8_3:59102810-59102829 None:intergenic 30.0%
!! CTTAGTTTTCATTGCTAATG+AGG - chr8_3:59102808-59102827 Msa1298290:CDS 30.0%
! TTTTATCAGCAGAATTCACA+TGG - chr8_3:59102963-59102982 Msa1298290:CDS 30.0%
TCTCCATTCAATTCCTAAAT+TGG + chr8_3:59102990-59103009 None:intergenic 30.0%
TGTAAAAAGGAGAAGAGAAA+AGG - chr8_3:59103031-59103050 Msa1298290:CDS 30.0%
AATAAACAACCAAATCCAGA+TGG + chr8_3:59103259-59103278 None:intergenic 30.0%
!! CCACGATGTGAATTTATTTT+TGG + chr8_3:59103697-59103716 None:intergenic 30.0%
CCAAAAATAAATTCACATCG+TGG - chr8_3:59103694-59103713 Msa1298290:CDS 30.0%
! TTCATTTGCTTTAGTTTCCA+AGG + chr8_3:59103875-59103894 None:intergenic 30.0%
GCAAATGAAGTTGAAAAGTT+AGG - chr8_3:59103886-59103905 Msa1298290:CDS 30.0%
CTCAAATGAGTATAGGATAT+TGG - chr8_3:59103930-59103949 Msa1298290:CDS 30.0%
! ATTTTGTGGAAAAAGAGAGA+TGG - chr8_3:59104037-59104056 Msa1298290:CDS 30.0%
GGAAAACAACCATTGAAACA+GGG + chr8_3:59102290-59102309 None:intergenic 35.0%
TGGAAAACAACCATTGAAAC+AGG + chr8_3:59102291-59102310 None:intergenic 35.0%
! TGGTTTGTGAAATGTGTGTT+GGG + chr8_3:59102416-59102435 None:intergenic 35.0%
! ATGGTTTGTGAAATGTGTGT+TGG + chr8_3:59102417-59102436 None:intergenic 35.0%
GAGAAGTTGTGGAAAATTGA+GGG + chr8_3:59102490-59102509 None:intergenic 35.0%
TGAGAAGTTGTGGAAAATTG+AGG + chr8_3:59102491-59102510 None:intergenic 35.0%
TTGATCTACTTGAGAAGTTG+TGG + chr8_3:59102501-59102520 None:intergenic 35.0%
AGTGTATGATCATAGCAATG+AGG - chr8_3:59102895-59102914 Msa1298290:CDS 35.0%
! ATTGATAGTTGCAAGAAGCA+AGG - chr8_3:59102932-59102951 Msa1298290:CDS 35.0%
GAATTCACATGGTCCAATTT+AGG - chr8_3:59102974-59102993 Msa1298290:CDS 35.0%
GGTCCAATTTAGGAATTGAA+TGG - chr8_3:59102984-59103003 Msa1298290:CDS 35.0%
CCAGTAACCTTTGAATAAAG+TGG + chr8_3:59103073-59103092 None:intergenic 35.0%
CCACTTTATTCAAAGGTTAC+TGG - chr8_3:59103070-59103089 Msa1298290:CDS 35.0%
ATGTCTTTGGCACAAGAAAA+TGG - chr8_3:59103115-59103134 Msa1298290:CDS 35.0%
!! CCTAAAGTGTCTCTTTCTTT+TGG + chr8_3:59103175-59103194 None:intergenic 35.0%
CCAAAAGAAAGAGACACTTT+AGG - chr8_3:59103172-59103191 Msa1298290:CDS 35.0%
ATCTTTGGTGAAAATCCATC+TGG - chr8_3:59103241-59103260 Msa1298290:CDS 35.0%
TTTAGGAAATGCTACAAGCA+TGG - chr8_3:59103312-59103331 Msa1298290:CDS 35.0%
TTAGGAAATGCTACAAGCAT+GGG - chr8_3:59103313-59103332 Msa1298290:CDS 35.0%
CCTAATAATCCAGAGTTTGA+CGG + chr8_3:59103406-59103425 None:intergenic 35.0%
GACTAAAGAAGAGCAAAATG+AGG - chr8_3:59103456-59103475 Msa1298290:CDS 35.0%
ATCACCATCATCAGAAATTG+TGG - chr8_3:59103480-59103499 Msa1298290:CDS 35.0%
GGAGATGAATGATGAAAGAT+TGG - chr8_3:59103516-59103535 Msa1298290:CDS 35.0%
AGATTGGAAATTGAGTGTAG+AGG - chr8_3:59103532-59103551 Msa1298290:CDS 35.0%
GGAATAATATCTCTCTAAGC+AGG - chr8_3:59103794-59103813 Msa1298290:CDS 35.0%
!!! ATTTGAGCCACTTTTCTTCT+TGG + chr8_3:59103917-59103936 None:intergenic 35.0%
AAAGTGGCTCAAATGAGTAT+AGG - chr8_3:59103923-59103942 Msa1298290:CDS 35.0%
!!! ATTGGTTTTGACTGCAACAT+TGG - chr8_3:59103948-59103967 Msa1298290:CDS 35.0%
!!! TTGGTTTTGACTGCAACATT+GGG - chr8_3:59103949-59103968 Msa1298290:CDS 35.0%
TTTCCACAAAATCAGCATCA+AGG + chr8_3:59104029-59104048 None:intergenic 35.0%
GGAAAACAACCATTGAAACA+GGG + chr8_3:59102290-59102309 None:intergenic 35.0%
TGGAAAACAACCATTGAAAC+AGG + chr8_3:59102291-59102310 None:intergenic 35.0%
! TGGTTTGTGAAATGTGTGTT+GGG + chr8_3:59102416-59102435 None:intergenic 35.0%
! ATGGTTTGTGAAATGTGTGT+TGG + chr8_3:59102417-59102436 None:intergenic 35.0%
GAGAAGTTGTGGAAAATTGA+GGG + chr8_3:59102490-59102509 None:intergenic 35.0%
TGAGAAGTTGTGGAAAATTG+AGG + chr8_3:59102491-59102510 None:intergenic 35.0%
TTGATCTACTTGAGAAGTTG+TGG + chr8_3:59102501-59102520 None:intergenic 35.0%
AGTGTATGATCATAGCAATG+AGG - chr8_3:59102895-59102914 Msa1298290:CDS 35.0%
! ATTGATAGTTGCAAGAAGCA+AGG - chr8_3:59102932-59102951 Msa1298290:CDS 35.0%
GAATTCACATGGTCCAATTT+AGG - chr8_3:59102974-59102993 Msa1298290:CDS 35.0%
GGTCCAATTTAGGAATTGAA+TGG - chr8_3:59102984-59103003 Msa1298290:CDS 35.0%
CCAGTAACCTTTGAATAAAG+TGG + chr8_3:59103073-59103092 None:intergenic 35.0%
CCACTTTATTCAAAGGTTAC+TGG - chr8_3:59103070-59103089 Msa1298290:CDS 35.0%
ATGTCTTTGGCACAAGAAAA+TGG - chr8_3:59103115-59103134 Msa1298290:CDS 35.0%
!! CCTAAAGTGTCTCTTTCTTT+TGG + chr8_3:59103175-59103194 None:intergenic 35.0%
CCAAAAGAAAGAGACACTTT+AGG - chr8_3:59103172-59103191 Msa1298290:CDS 35.0%
ATCTTTGGTGAAAATCCATC+TGG - chr8_3:59103241-59103260 Msa1298290:CDS 35.0%
TTTAGGAAATGCTACAAGCA+TGG - chr8_3:59103312-59103331 Msa1298290:CDS 35.0%
TTAGGAAATGCTACAAGCAT+GGG - chr8_3:59103313-59103332 Msa1298290:CDS 35.0%
CCTAATAATCCAGAGTTTGA+CGG + chr8_3:59103406-59103425 None:intergenic 35.0%
GACTAAAGAAGAGCAAAATG+AGG - chr8_3:59103456-59103475 Msa1298290:CDS 35.0%
ATCACCATCATCAGAAATTG+TGG - chr8_3:59103480-59103499 Msa1298290:CDS 35.0%
GGAGATGAATGATGAAAGAT+TGG - chr8_3:59103516-59103535 Msa1298290:CDS 35.0%
AGATTGGAAATTGAGTGTAG+AGG - chr8_3:59103532-59103551 Msa1298290:CDS 35.0%
GGAATAATATCTCTCTAAGC+AGG - chr8_3:59103794-59103813 Msa1298290:CDS 35.0%
!!! ATTTGAGCCACTTTTCTTCT+TGG + chr8_3:59103917-59103936 None:intergenic 35.0%
AAAGTGGCTCAAATGAGTAT+AGG - chr8_3:59103923-59103942 Msa1298290:CDS 35.0%
!!! ATTGGTTTTGACTGCAACAT+TGG - chr8_3:59103948-59103967 Msa1298290:CDS 35.0%
!!! TTGGTTTTGACTGCAACATT+GGG - chr8_3:59103949-59103968 Msa1298290:CDS 35.0%
TTTCCACAAAATCAGCATCA+AGG + chr8_3:59104029-59104048 None:intergenic 35.0%
TCATCACAACCCTGTTTCAA+TGG - chr8_3:59102278-59102297 Msa1298290:CDS 40.0%
GGGATAAAGACTTGAAGATG+TGG + chr8_3:59102396-59102415 None:intergenic 40.0%
GTAAATGTGGGAGAGATTCA+TGG + chr8_3:59102436-59102455 None:intergenic 40.0%
!! CTAGTTCTGATTCTTGTCCT+CGG + chr8_3:59102730-59102749 None:intergenic 40.0%
TGATCATAGCAATGAGGCAT+TGG - chr8_3:59102901-59102920 Msa1298290:CDS 40.0%
CTTTGGCACAAGAAAATGGT+TGG - chr8_3:59103119-59103138 Msa1298290:CDS 40.0%
GGTGAAAATCCATCTGGATT+TGG - chr8_3:59103247-59103266 Msa1298290:CDS 40.0%
GTGTGACATTGTGCAAATGT+AGG + chr8_3:59103355-59103374 None:intergenic 40.0%
CCGTCAAACTCTGGATTATT+AGG - chr8_3:59103403-59103422 Msa1298290:CDS 40.0%
AGCTCCACAATTTCTGATGA+TGG + chr8_3:59103487-59103506 None:intergenic 40.0%
TCAGAAATTGTGGAGCTACA+AGG - chr8_3:59103490-59103509 Msa1298290:CDS 40.0%
TTGTGCAGAAGTTAGCTGAT+AGG - chr8_3:59103773-59103792 Msa1298290:CDS 40.0%
TTGATAGGAACCAAGAAGAG+AGG - chr8_3:59103842-59103861 Msa1298290:CDS 40.0%
TGATAGGAACCAAGAAGAGA+GGG - chr8_3:59103843-59103862 Msa1298290:CDS 40.0%
!! GGTTATGGGCTTTTGTTTCT+AGG - chr8_3:59104001-59104020 Msa1298290:CDS 40.0%
!!! GTTCCTTGATGCTGATTTTG+TGG - chr8_3:59104023-59104042 Msa1298290:CDS 40.0%
TCATCACAACCCTGTTTCAA+TGG - chr8_3:59102278-59102297 Msa1298290:CDS 40.0%
GGGATAAAGACTTGAAGATG+TGG + chr8_3:59102396-59102415 None:intergenic 40.0%
GTAAATGTGGGAGAGATTCA+TGG + chr8_3:59102436-59102455 None:intergenic 40.0%
!! CTAGTTCTGATTCTTGTCCT+CGG + chr8_3:59102730-59102749 None:intergenic 40.0%
TGATCATAGCAATGAGGCAT+TGG - chr8_3:59102901-59102920 Msa1298290:CDS 40.0%
CTTTGGCACAAGAAAATGGT+TGG - chr8_3:59103119-59103138 Msa1298290:CDS 40.0%
GGTGAAAATCCATCTGGATT+TGG - chr8_3:59103247-59103266 Msa1298290:CDS 40.0%
GTGTGACATTGTGCAAATGT+AGG + chr8_3:59103355-59103374 None:intergenic 40.0%
CCGTCAAACTCTGGATTATT+AGG - chr8_3:59103403-59103422 Msa1298290:CDS 40.0%
AGCTCCACAATTTCTGATGA+TGG + chr8_3:59103487-59103506 None:intergenic 40.0%
TCAGAAATTGTGGAGCTACA+AGG - chr8_3:59103490-59103509 Msa1298290:CDS 40.0%
TTGTGCAGAAGTTAGCTGAT+AGG - chr8_3:59103773-59103792 Msa1298290:CDS 40.0%
TTGATAGGAACCAAGAAGAG+AGG - chr8_3:59103842-59103861 Msa1298290:CDS 40.0%
TGATAGGAACCAAGAAGAGA+GGG - chr8_3:59103843-59103862 Msa1298290:CDS 40.0%
!! GGTTATGGGCTTTTGTTTCT+AGG - chr8_3:59104001-59104020 Msa1298290:CDS 40.0%
!!! GTTCCTTGATGCTGATTTTG+TGG - chr8_3:59104023-59104042 Msa1298290:CDS 40.0%
GATGATGTTCCTCCAGAACA+TGG + chr8_3:59102263-59102282 None:intergenic 45.0%
TCAGAGGCAAGAAATGGAGA+TGG + chr8_3:59102311-59102330 None:intergenic 45.0%
GAGTTCTCAGAGGCAAGAAA+TGG + chr8_3:59102317-59102336 None:intergenic 45.0%
GTTATCATGGGAGTTCTCAG+AGG + chr8_3:59102327-59102346 None:intergenic 45.0%
AAGACTTGAAGATGTGGCTG+AGG + chr8_3:59102390-59102409 None:intergenic 45.0%
AAGTCACAGATACTCTACCG+AGG - chr8_3:59102710-59102729 Msa1298290:CDS 45.0%
! TGTGAGAAGCTCTGATCCTT+TGG + chr8_3:59102876-59102895 None:intergenic 45.0%
GTCTTAACCATCTCGTTCTC+AGG + chr8_3:59103439-59103458 None:intergenic 45.0%
AATTGTGGAGCTACAAGGCA+TGG - chr8_3:59103495-59103514 Msa1298290:CDS 45.0%
GCTAACTTCTGCACAAGTGT+TGG + chr8_3:59103769-59103788 None:intergenic 45.0%
GAACCAAGAAGAGAGGGAAT+TGG - chr8_3:59103849-59103868 Msa1298290:CDS 45.0%
GGCATGTCCAAGAAGAAAAG+TGG - chr8_3:59103907-59103926 Msa1298290:CDS 45.0%
GATGATGTTCCTCCAGAACA+TGG + chr8_3:59102263-59102282 None:intergenic 45.0%
TCAGAGGCAAGAAATGGAGA+TGG + chr8_3:59102311-59102330 None:intergenic 45.0%
GAGTTCTCAGAGGCAAGAAA+TGG + chr8_3:59102317-59102336 None:intergenic 45.0%
GTTATCATGGGAGTTCTCAG+AGG + chr8_3:59102327-59102346 None:intergenic 45.0%
AAGACTTGAAGATGTGGCTG+AGG + chr8_3:59102390-59102409 None:intergenic 45.0%
AAGTCACAGATACTCTACCG+AGG - chr8_3:59102710-59102729 Msa1298290:CDS 45.0%
! TGTGAGAAGCTCTGATCCTT+TGG + chr8_3:59102876-59102895 None:intergenic 45.0%
GTCTTAACCATCTCGTTCTC+AGG + chr8_3:59103439-59103458 None:intergenic 45.0%
AATTGTGGAGCTACAAGGCA+TGG - chr8_3:59103495-59103514 Msa1298290:CDS 45.0%
GCTAACTTCTGCACAAGTGT+TGG + chr8_3:59103769-59103788 None:intergenic 45.0%
GAACCAAGAAGAGAGGGAAT+TGG - chr8_3:59103849-59103868 Msa1298290:CDS 45.0%
GGCATGTCCAAGAAGAAAAG+TGG - chr8_3:59103907-59103926 Msa1298290:CDS 45.0%
ATGCAACCACCATGTTCTGG+AGG - chr8_3:59102251-59102270 Msa1298290:CDS 50.0%
GATGTTCCTCCAGAACATGG+TGG + chr8_3:59102260-59102279 None:intergenic 50.0%
ATTAGACCACGCAGACTCAG+TGG - chr8_3:59103555-59103574 Msa1298290:CDS 50.0%
TTAGACCACGCAGACTCAGT+GGG - chr8_3:59103556-59103575 Msa1298290:CDS 50.0%
TTCACATCGTGGACCTACAG+TGG - chr8_3:59103705-59103724 Msa1298290:CDS 50.0%
AGGCCAATTCCCTCTCTTCT+TGG + chr8_3:59103855-59103874 None:intergenic 50.0%
! AGAAGAGAGGGAATTGGCCT+TGG - chr8_3:59103855-59103874 Msa1298290:CDS 50.0%
ATGCAACCACCATGTTCTGG+AGG - chr8_3:59102251-59102270 Msa1298290:CDS 50.0%
GATGTTCCTCCAGAACATGG+TGG + chr8_3:59102260-59102279 None:intergenic 50.0%
ATTAGACCACGCAGACTCAG+TGG - chr8_3:59103555-59103574 Msa1298290:CDS 50.0%
TTAGACCACGCAGACTCAGT+GGG - chr8_3:59103556-59103575 Msa1298290:CDS 50.0%
TTCACATCGTGGACCTACAG+TGG - chr8_3:59103705-59103724 Msa1298290:CDS 50.0%
AGGCCAATTCCCTCTCTTCT+TGG + chr8_3:59103855-59103874 None:intergenic 50.0%
! AGAAGAGAGGGAATTGGCCT+TGG - chr8_3:59103855-59103874 Msa1298290:CDS 50.0%
CAAGTAGCGAGTAGACGACG+AGG + chr8_3:59102642-59102661 None:intergenic 55.0%
! GAGAGTGCACCGTCAAACTC+TGG - chr8_3:59103394-59103413 Msa1298290:CDS 55.0%
CGCTTCTCCTGAGAACGAGA+TGG - chr8_3:59103429-59103448 Msa1298290:CDS 55.0%
TTAGTCCCACTGAGTCTGCG+TGG + chr8_3:59103564-59103583 None:intergenic 55.0%
CAAGTAGCGAGTAGACGACG+AGG + chr8_3:59102642-59102661 None:intergenic 55.0%
! GAGAGTGCACCGTCAAACTC+TGG - chr8_3:59103394-59103413 Msa1298290:CDS 55.0%
CGCTTCTCCTGAGAACGAGA+TGG - chr8_3:59103429-59103448 Msa1298290:CDS 55.0%
TTAGTCCCACTGAGTCTGCG+TGG + chr8_3:59103564-59103583 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 59102251 59104098 59102251 ID=Msa1298290;Name=Msa1298290
chr8_3 mRNA 59102251 59104098 59102251 ID=Msa1298290-mRNA-1;Parent=Msa1298290;Name=Msa1298290-mRNA-1;_AED=0.17;_eAED=0.17;_QI=0|-1|0|1|-1|1|1|0|615
chr8_3 exon 59102251 59104098 59102251 ID=Msa1298290-mRNA-1:exon:17063;Parent=Msa1298290-mRNA-1
chr8_3 CDS 59102251 59104098 59102251 ID=Msa1298290-mRNA-1:cds;Parent=Msa1298290-mRNA-1
Gene Sequence

>Msa1298290

ATGCAACCACCATGTTCTGGAGGAACATCATCACAACCCTGTTTCAATGGTTGTTTTCCATCTCCATTTCTTGCCTCTGAGAACTCCCATGATAACACTTCCAATTCAAATAGTGTCAGTAAAAATGATGACTTAGCCTCAGCCACATCTTCAAGTCTTTATCCCAACACACATTTCACAAACCATGAATCTCTCCCACATTTACAAGACTCATATAATAACTTCATCAAATCATTCCCTCAATTTTCCACAACTTCTCAAGTAGATCAAATTCGAGATCAAGAATATCAACACTTGAATAGTCTTTCCAATACATGTTTTGATTACACTGGTTATGGTCTTTTCTCTTATGCTCAGCAGAACCAAAAATCATGTTCTTATTCATCTTCCTCGTCGTCTACTCGCTACTTGAACTTAGAACAATCGTTCTTTGATGTATCGATTAAGTCAATGAATTTGAAGTCACAGATACTCTACCGAGGACAAGAATCAGAACTAGAGTCAAGAATGAGAGAAAGAATAATGACATTTATGAATGTCTCTGAAACCGATTACGCCTTAGTTTTCATTGCTAATGAGGTATCTGCTTTTAAACTTGTATCTGATTCATTTCTATTTCAATCCAAAGGATCAGAGCTTCTCACAGTGTATGATCATAGCAATGAGGCATTGGAAATGATGATTGATAGTTGCAAGAAGCAAGGAGTGCAAATTTTATCAGCAGAATTCACATGGTCCAATTTAGGAATTGAATGGAGAAAACTAAAGAAGATGATAACATGTAAAAAGGAGAAGAGAAAAGGTAGTTTATTTGTTTTTCCACTTTATTCAAAGGTTACTGGATCACCATATTCTTATTTTTGGATGTCTTTGGCACAAGAAAATGGTTGGTGTGTAATGCTTGATTTATGTGCATTGAGACCAAAAGAAAGAGACACTTTAGGTATGTCTATGTTTAAACCTGATTTTATGGTTTGTTCATTTTACAAAATCTTTGGTGAAAATCCATCTGGATTTGGTTGTTTATTTGTCAAAAAATCAAGTATTTCTTCACTTAAAGATTTAGGAAATGCTACAAGCATGGGAATTATAAGTCTTGTTCCTACATTTGCACAATGTCACACTTCTAGCTCTCGTCAAAATGAGAGTGCACCGTCAAACTCTGGATTATTAGGATTCGCTTCTCCTGAGAACGAGATGGTTAAGACTAAAGAAGAGCAAAATGAGGTATCACCATCATCAGAAATTGTGGAGCTACAAGGCATGGAGATGAATGATGAAAGATTGGAAATTGAGTGTAGAGGATTAGACCACGCAGACTCAGTGGGACTAATAGTGATTAGTACAAGAACAAGATATTTGATTAATTGGCTTGTTAATGCATTAATGAGTCTTCAACATCCACATGATGAAAATAGATTTTCATTAATTAGAATCTATGGGCCAAAAATAAATTCACATCGTGGACCTACAGTGGCATTTAATATATTTGACTGGAAAGGAGAAAAGATTGATCCAACACTTGTGCAGAAGTTAGCTGATAGGAATAATATCTCTCTAAGCAGGTCCTGTTTGAAAAATATCAAGTTCTTTGATAGGAACCAAGAAGAGAGGGAATTGGCCTTGGAAACTAAAGCAAATGAAGTTGAAAAGTTAGGCATGTCCAAGAAGAAAAGTGGCTCAAATGAGTATAGGATATTGGTTTTGACTGCAACATTGGGCTTCTTGACAAACTATGAAGATGTTTATAGGTTATGGGCTTTTGTTTCTAGGTTCCTTGATGCTGATTTTGTGGAAAAAGAGAGATGGAGATACATTGCTCTAAATCAAAAAACTATTGAAGTGTGA

Protein sequence

>Msa1298290

MQPPCSGGTSSQPCFNGCFPSPFLASENSHDNTSNSNSVSKNDDLASATSSSLYPNTHFTNHESLPHLQDSYNNFIKSFPQFSTTSQVDQIRDQEYQHLNSLSNTCFDYTGYGLFSYAQQNQKSCSYSSSSSSTRYLNLEQSFFDVSIKSMNLKSQILYRGQESELESRMRERIMTFMNVSETDYALVFIANEVSAFKLVSDSFLFQSKGSELLTVYDHSNEALEMMIDSCKKQGVQILSAEFTWSNLGIEWRKLKKMITCKKEKRKGSLFVFPLYSKVTGSPYSYFWMSLAQENGWCVMLDLCALRPKERDTLGMSMFKPDFMVCSFYKIFGENPSGFGCLFVKKSSISSLKDLGNATSMGIISLVPTFAQCHTSSSRQNESAPSNSGLLGFASPENEMVKTKEEQNEVSPSSEIVELQGMEMNDERLEIECRGLDHADSVGLIVISTRTRYLINWLVNALMSLQHPHDENRFSLIRIYGPKINSHRGPTVAFNIFDWKGEKIDPTLVQKLADRNNISLSRSCLKNIKFFDRNQEERELALETKANEVEKLGMSKKKSGSNEYRILVLTATLGFLTNYEDVYRLWAFVSRFLDADFVEKERWRYIALNQKTIEV*