Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0542450 | XP_004511028.2 | 85.625 | 160 | 15 | 1 | 1 | 152 | 45 | 204 | 1.07e-93 | 280 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0542450 | sp|O80366|ARR9_ARATH | 67.742 | 155 | 40 | 1 | 1 | 145 | 1 | 155 | 1.21e-72 | 220 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0542450 | A0A1S2YWH2 | 85.625 | 160 | 15 | 1 | 1 | 152 | 45 | 204 | 5.12e-94 | 280 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0542450 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017510 | Msa0542450 | 0.827630 | 1.407220e-54 | -8.615850e-47 |
| Msa0153910 | Msa0542450 | 0.817081 | 3.968341e-52 | -8.615850e-47 |
| Msa0157290 | Msa0542450 | 0.827127 | 1.856803e-54 | -8.615850e-47 |
| Msa0542450 | Msa0678930 | 0.802915 | 4.472145e-49 | -8.615850e-47 |
| Msa0542450 | Msa0745060 | 0.803223 | 3.863121e-49 | -8.615850e-47 |
| Msa0542450 | Msa0766630 | 0.806215 | 9.165053e-50 | -8.615850e-47 |
| Msa0542450 | Msa0825860 | 0.802650 | 5.072100e-49 | -8.615850e-47 |
| Msa0542450 | Msa0880140 | 0.824822 | 6.552934e-54 | -8.615850e-47 |
| Msa0542450 | Msa0885290 | 0.804325 | 2.280819e-49 | -8.615850e-47 |
| Msa0542450 | Msa0981370 | 0.806680 | 7.314969e-50 | -8.615850e-47 |
| Msa0542450 | Msa1014540 | 0.803366 | 3.608253e-49 | -8.615850e-47 |
| Msa0542450 | Msa1024240 | 0.839486 | 1.539378e-57 | -8.615850e-47 |
| Msa0542450 | Msa1092990 | 0.810103 | 1.361447e-50 | -8.615850e-47 |
| Msa0542450 | Msa1109440 | 0.820173 | 7.887864e-53 | -8.615850e-47 |
| Msa0542450 | Msa1121200 | 0.811462 | 6.917376e-51 | -8.615850e-47 |
| Msa0542450 | Msa1284680 | 0.818098 | 2.339751e-52 | -8.615850e-47 |
| Msa0542450 | Msa1307890 | 0.819850 | 9.353048e-53 | -8.615850e-47 |
| Msa0542450 | Msa1433120 | 0.811434 | 7.016264e-51 | -8.615850e-47 |
| Msa0542450 | Msa1438250 | 0.861857 | 7.637368e-64 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0542450 | MtrunA17_Chr8g0352871 | 85.806 | 155 | 14 | 1 | 1 | 147 | 1 | 155 | 7.32e-94 | 269 |
| Msa0542450 | MtrunA17_Chr3g0082861 | 74.839 | 155 | 30 | 1 | 7 | 152 | 2 | 156 | 2.61e-82 | 239 |
| Msa0542450 | MtrunA17_Chr7g0256551 | 69.427 | 157 | 39 | 1 | 1 | 148 | 1 | 157 | 6.78e-79 | 233 |
| Msa0542450 | MtrunA17_Chr4g0021731 | 96.512 | 86 | 3 | 0 | 1 | 86 | 3 | 88 | 1.74e-56 | 171 |
| Msa0542450 | MtrunA17_Chr3g0124861 | 54.717 | 159 | 53 | 3 | 9 | 149 | 22 | 179 | 9.64e-56 | 174 |
| Msa0542450 | MtrunA17_Chr4g0059571 | 58.042 | 143 | 60 | 0 | 4 | 146 | 21 | 163 | 1.08e-53 | 168 |
| Msa0542450 | MtrunA17_Chr3g0128691 | 60.305 | 131 | 48 | 2 | 10 | 137 | 19 | 148 | 1.87e-51 | 161 |
| Msa0542450 | MtrunA17_Chr5g0414931 | 55.479 | 146 | 59 | 2 | 8 | 148 | 15 | 159 | 3.44e-51 | 163 |
| Msa0542450 | MtrunA17_Chr3g0118211 | 51.678 | 149 | 72 | 0 | 4 | 152 | 18 | 166 | 4.05e-51 | 161 |
| Msa0542450 | MtrunA17_Chr1g0170741 | 59.854 | 137 | 52 | 2 | 8 | 141 | 7 | 143 | 5.05e-50 | 159 |
| Msa0542450 | MtrunA17_Chr4g0030271 | 29.545 | 132 | 84 | 2 | 7 | 138 | 87 | 209 | 3.61e-15 | 71.6 |
| Msa0542450 | MtrunA17_Chr8g0345901 | 29.008 | 131 | 84 | 1 | 11 | 141 | 38 | 159 | 3.66e-15 | 71.6 |
| Msa0542450 | MtrunA17_Chr8g0376881 | 30.769 | 143 | 87 | 3 | 4 | 146 | 24 | 154 | 6.90e-15 | 70.9 |
| Msa0542450 | MtrunA17_Chr1g0181811 | 28.125 | 128 | 83 | 2 | 11 | 138 | 87 | 205 | 2.58e-13 | 66.2 |
| Msa0542450 | MtrunA17_Chr7g0275891 | 31.429 | 140 | 83 | 4 | 11 | 150 | 11 | 137 | 3.60e-13 | 65.5 |
| Msa0542450 | MtrunA17_Chr1g0149841 | 29.286 | 140 | 85 | 3 | 11 | 150 | 11 | 136 | 1.18e-12 | 64.3 |
| Msa0542450 | MtrunA17_Chr3g0123131 | 28.676 | 136 | 85 | 2 | 11 | 146 | 19 | 142 | 1.21e-12 | 64.3 |
| Msa0542450 | MtrunA17_Chr1g0161431 | 30.216 | 139 | 85 | 3 | 9 | 147 | 15 | 141 | 1.44e-12 | 63.9 |
| Msa0542450 | MtrunA17_Chr1g0149851 | 31.538 | 130 | 77 | 3 | 11 | 140 | 11 | 128 | 3.11e-12 | 63.2 |
| Msa0542450 | MtrunA17_Chr7g0275401 | 30.303 | 132 | 80 | 3 | 9 | 140 | 9 | 128 | 3.28e-12 | 62.4 |
| Msa0542450 | MtrunA17_Chr7g0276361 | 26.515 | 132 | 88 | 1 | 7 | 138 | 12 | 134 | 1.59e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0542450 | AT3G57040.2 | 67.742 | 155 | 40 | 1 | 1 | 145 | 1 | 155 | 1.23e-73 | 220 |
| Msa0542450 | AT3G57040.1 | 67.742 | 155 | 40 | 1 | 1 | 145 | 1 | 155 | 1.23e-73 | 220 |
| Msa0542450 | AT2G41310.1 | 63.871 | 155 | 48 | 1 | 1 | 147 | 1 | 155 | 1.01e-70 | 213 |
| Msa0542450 | AT1G59940.1 | 61.832 | 131 | 50 | 0 | 8 | 138 | 32 | 162 | 1.45e-55 | 174 |
| Msa0542450 | AT1G59940.2 | 61.832 | 131 | 50 | 0 | 8 | 138 | 124 | 254 | 5.10e-54 | 173 |
| Msa0542450 | AT3G48100.1 | 58.273 | 139 | 57 | 1 | 2 | 139 | 18 | 156 | 6.34e-54 | 168 |
| Msa0542450 | AT1G10470.3 | 60.305 | 131 | 52 | 0 | 8 | 138 | 19 | 149 | 7.62e-54 | 170 |
| Msa0542450 | AT1G10470.1 | 60.305 | 131 | 52 | 0 | 8 | 138 | 33 | 163 | 9.57e-54 | 171 |
| Msa0542450 | AT5G62920.1 | 61.538 | 130 | 50 | 0 | 9 | 138 | 25 | 154 | 2.17e-52 | 164 |
| Msa0542450 | AT1G19050.1 | 55.147 | 136 | 61 | 0 | 8 | 143 | 23 | 158 | 5.64e-52 | 164 |
| Msa0542450 | AT1G74890.1 | 56.934 | 137 | 59 | 0 | 8 | 144 | 17 | 153 | 9.93e-52 | 164 |
| Msa0542450 | AT3G56380.1 | 53.623 | 138 | 63 | 1 | 4 | 140 | 15 | 152 | 4.96e-51 | 160 |
| Msa0542450 | AT3G56380.2 | 53.237 | 139 | 63 | 2 | 4 | 140 | 15 | 153 | 3.18e-49 | 155 |
| Msa0542450 | AT2G40670.1 | 52.518 | 139 | 57 | 2 | 8 | 140 | 28 | 163 | 4.88e-49 | 155 |
| Msa0542450 | AT2G40670.2 | 52.143 | 140 | 57 | 3 | 8 | 140 | 28 | 164 | 3.43e-47 | 150 |
| Msa0542450 | AT2G07440.1 | 65.574 | 61 | 21 | 0 | 87 | 147 | 9 | 69 | 8.31e-23 | 87.8 |
| Msa0542450 | AT1G10470.2 | 58.491 | 53 | 22 | 0 | 86 | 138 | 35 | 87 | 3.39e-16 | 72.0 |
| Msa0542450 | AT2G25180.1 | 32.308 | 130 | 76 | 3 | 11 | 140 | 19 | 136 | 8.84e-14 | 67.8 |
| Msa0542450 | AT5G07210.2 | 28.472 | 144 | 90 | 3 | 8 | 151 | 15 | 145 | 1.96e-13 | 67.0 |
| Msa0542450 | AT5G60100.7 | 30.469 | 128 | 80 | 2 | 11 | 138 | 66 | 184 | 6.58e-13 | 65.5 |
| Msa0542450 | AT5G60100.6 | 30.469 | 128 | 80 | 2 | 11 | 138 | 66 | 184 | 6.58e-13 | 65.5 |
| Msa0542450 | AT5G60100.4 | 30.469 | 128 | 80 | 2 | 11 | 138 | 66 | 184 | 6.58e-13 | 65.5 |
| Msa0542450 | AT5G60100.2 | 30.469 | 128 | 80 | 2 | 11 | 138 | 66 | 184 | 8.13e-13 | 65.1 |
| Msa0542450 | AT5G02810.1 | 27.344 | 128 | 84 | 2 | 11 | 138 | 80 | 198 | 9.49e-13 | 65.1 |
| Msa0542450 | AT1G67710.1 | 28.148 | 135 | 85 | 2 | 9 | 143 | 11 | 133 | 1.11e-12 | 64.7 |
| Msa0542450 | AT5G60100.5 | 30.469 | 128 | 80 | 2 | 11 | 138 | 66 | 184 | 1.50e-12 | 64.3 |
| Msa0542450 | AT5G60100.3 | 30.469 | 128 | 80 | 2 | 11 | 138 | 66 | 184 | 1.50e-12 | 64.3 |
| Msa0542450 | AT5G60100.1 | 30.469 | 128 | 80 | 2 | 11 | 138 | 66 | 184 | 1.50e-12 | 64.3 |
| Msa0542450 | AT3G16857.1 | 28.889 | 135 | 84 | 3 | 9 | 143 | 37 | 159 | 1.03e-11 | 62.0 |
| Msa0542450 | AT3G16857.2 | 28.889 | 135 | 84 | 3 | 9 | 143 | 37 | 159 | 1.04e-11 | 62.0 |
| Msa0542450 | AT2G46790.3 | 25.170 | 147 | 100 | 3 | 6 | 152 | 34 | 170 | 1.99e-11 | 61.2 |
| Msa0542450 | AT2G46790.1 | 25.170 | 147 | 100 | 3 | 6 | 152 | 34 | 170 | 2.01e-11 | 61.2 |
| Msa0542450 | AT1G49190.1 | 28.788 | 132 | 82 | 3 | 10 | 141 | 35 | 154 | 3.28e-11 | 60.5 |
| Msa0542450 | AT5G24470.1 | 27.820 | 133 | 85 | 2 | 9 | 140 | 50 | 172 | 5.42e-11 | 60.1 |
Find 25 sgRNAs with CRISPR-Local
Find 94 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGGTATGTCTTTAAAAGATT+TGG | 0.160260 | 4_1:+27515003 | None:intergenic |
| CTGATTGTTGAACTGGTTTC+AGG | 0.173333 | 4_1:+27514765 | None:intergenic |
| AGAGACTCAGTTCCATGTTT+TGG | 0.251951 | 4_1:-27515881 | Msa0542450:CDS |
| AGTAAGGCTTTAAAATTTCT+TGG | 0.266953 | 4_1:-27515596 | Msa0542450:CDS |
| TCTCACCTGCTAATCCTTGA+TGG | 0.304860 | 4_1:+27514953 | None:intergenic |
| GGCTTTAAAATTTCTTGGTT+TGG | 0.308229 | 4_1:-27515591 | Msa0542450:CDS |
| TTTACATCTGATTGTTGAAC+TGG | 0.343425 | 4_1:+27514758 | None:intergenic |
| TCTTGGTTTGGTTGAGGATG+TGG | 0.414547 | 4_1:-27515579 | Msa0542450:CDS |
| TTTGATGAAATCAAGAGTTA+AGG | 0.416978 | 4_1:-27514720 | Msa0542450:CDS |
| TACAATGGACTCTGCTAGTA+AGG | 0.427203 | 4_1:-27515612 | Msa0542450:CDS |
| TATTGTATGCCAGGGATGAC+TGG | 0.449232 | 4_1:-27515413 | Msa0542450:CDS |
| AAAATTTCTTGGTTTGGTTG+AGG | 0.449963 | 4_1:-27515585 | Msa0542450:CDS |
| ACTCTTGATTTCATCAAATG+AGG | 0.455768 | 4_1:+27514725 | None:intergenic |
| ATAACAGATTATTGTATGCC+AGG | 0.463952 | 4_1:-27515422 | Msa0542450:CDS |
| ATGTTCCATCAAGGATTAGC+AGG | 0.504757 | 4_1:-27514958 | Msa0542450:intron |
| TTGATAGAATGTTGATTGAG+AGG | 0.516155 | 4_1:-27515840 | Msa0542450:CDS |
| GATGTGGCTTCAGAAGTTCA+TGG | 0.523538 | 4_1:-27515563 | Msa0542450:CDS |
| ATGTGGCTTCAGAAGTTCAT+GGG | 0.534908 | 4_1:-27515562 | Msa0542450:CDS |
| CTTCAGAGAATGTTCCATCA+AGG | 0.539392 | 4_1:-27514967 | Msa0542450:CDS |
| AGATCATAGCCAGTCATCCC+TGG | 0.546401 | 4_1:+27515404 | None:intergenic |
| TCTGAAGACATAATCACAAT+CGG | 0.548679 | 4_1:+27514983 | None:intergenic |
| TAACAGATTATTGTATGCCA+GGG | 0.564090 | 4_1:-27515421 | Msa0542450:CDS |
| TATCATCAACAGCCAAAACA+TGG | 0.580138 | 4_1:+27515869 | None:intergenic |
| TGAAATGATAGTTACTACAA+TGG | 0.624009 | 4_1:-27515627 | Msa0542450:intron |
| TGTGGCTTCAGAAGTTCATG+GGG | 0.695893 | 4_1:-27515561 | Msa0542450:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTTCTTAATATTATGA+TGG | - | chr4_1:27515059-27515078 | Msa0542450:intron | 10.0% |
| !!! | ATTATTTTGTTTTTCTATTT+AGG | - | chr4_1:27515359-27515378 | Msa0542450:intron | 10.0% |
| !!! | TTTGTTTTCTTTATAATTTT+GGG | + | chr4_1:27515500-27515519 | None:intergenic | 10.0% |
| !!! | AATTTTTCTTAATATTATGA+TGG | - | chr4_1:27515059-27515078 | Msa0542450:intron | 10.0% |
| !!! | ATTATTTTGTTTTTCTATTT+AGG | - | chr4_1:27515359-27515378 | Msa0542450:intron | 10.0% |
| !!! | TTTGTTTTCTTTATAATTTT+GGG | + | chr4_1:27515500-27515519 | None:intergenic | 10.0% |
| !!! | CTTTGTTTTCTTTATAATTT+TGG | + | chr4_1:27515501-27515520 | None:intergenic | 15.0% |
| !!! | CTTTGTTTTCTTTATAATTT+TGG | + | chr4_1:27515501-27515520 | None:intergenic | 15.0% |
| !!! | ATATATGAACATAGTTTGTA+TGG | - | chr4_1:27514856-27514875 | Msa0542450:intron | 20.0% |
| !!! | TCAATATACTATTTTGTTGA+AGG | - | chr4_1:27514879-27514898 | Msa0542450:intron | 20.0% |
| !! | TTTCTTAAATAGAAGTGATT+TGG | - | chr4_1:27515407-27515426 | Msa0542450:CDS | 20.0% |
| !!! | TAACATCAAGTTAACAATTT+TGG | + | chr4_1:27515530-27515549 | None:intergenic | 20.0% |
| !! | TAAACAATTCTTTGATTCTA+AGG | - | chr4_1:27515554-27515573 | Msa0542450:intron | 20.0% |
| !!! | ATATATGAACATAGTTTGTA+TGG | - | chr4_1:27514856-27514875 | Msa0542450:intron | 20.0% |
| !!! | TCAATATACTATTTTGTTGA+AGG | - | chr4_1:27514879-27514898 | Msa0542450:intron | 20.0% |
| !! | TTTCTTAAATAGAAGTGATT+TGG | - | chr4_1:27515407-27515426 | Msa0542450:CDS | 20.0% |
| !!! | TAACATCAAGTTAACAATTT+TGG | + | chr4_1:27515530-27515549 | None:intergenic | 20.0% |
| !! | TAAACAATTCTTTGATTCTA+AGG | - | chr4_1:27515554-27515573 | Msa0542450:intron | 20.0% |
| ! | ATTGTAATGATGTAATGTGA+TGG | - | chr4_1:27514827-27514846 | Msa0542450:intron | 25.0% |
| ! | TTGTAATGATGTAATGTGAT+GGG | - | chr4_1:27514828-27514847 | Msa0542450:intron | 25.0% |
| ! | TGAAATGATAGTTACTACAA+TGG | - | chr4_1:27514956-27514975 | Msa0542450:intron | 25.0% |
| !!! | AGTAAGGCTTTAAAATTTCT+TGG | - | chr4_1:27514987-27515006 | Msa0542450:CDS | 25.0% |
| ! | TTGATTCATATTATTCATGC+AGG | - | chr4_1:27515118-27515137 | Msa0542450:intron | 25.0% |
| ! | TGAAAATGAGCACAAAATTA+TGG | + | chr4_1:27515309-27515328 | None:intergenic | 25.0% |
| !!! | TGATTAGTGATTACTGATTT+GGG | - | chr4_1:27515469-27515488 | Msa0542450:intron | 25.0% |
| ! | TTTGATGAAATCAAGAGTTA+AGG | - | chr4_1:27515863-27515882 | Msa0542450:CDS | 25.0% |
| ! | ATTGTAATGATGTAATGTGA+TGG | - | chr4_1:27514827-27514846 | Msa0542450:intron | 25.0% |
| ! | TTGTAATGATGTAATGTGAT+GGG | - | chr4_1:27514828-27514847 | Msa0542450:intron | 25.0% |
| ! | TGAAATGATAGTTACTACAA+TGG | - | chr4_1:27514956-27514975 | Msa0542450:intron | 25.0% |
| !!! | AGTAAGGCTTTAAAATTTCT+TGG | - | chr4_1:27514987-27515006 | Msa0542450:CDS | 25.0% |
| ! | TTGATTCATATTATTCATGC+AGG | - | chr4_1:27515118-27515137 | Msa0542450:intron | 25.0% |
| ! | TGAAAATGAGCACAAAATTA+TGG | + | chr4_1:27515309-27515328 | None:intergenic | 25.0% |
| !!! | TGATTAGTGATTACTGATTT+GGG | - | chr4_1:27515469-27515488 | Msa0542450:intron | 25.0% |
| ! | TTTGATGAAATCAAGAGTTA+AGG | - | chr4_1:27515863-27515882 | Msa0542450:CDS | 25.0% |
| ! | TTGATAGAATGTTGATTGAG+AGG | - | chr4_1:27514743-27514762 | Msa0542450:CDS | 30.0% |
| ! | CATGAAAAGAAGAAGTTTTG+AGG | + | chr4_1:27514771-27514790 | None:intergenic | 30.0% |
| ! | CTCAAAACTTCTTCTTTTCA+TGG | - | chr4_1:27514769-27514788 | Msa0542450:CDS | 30.0% |
| !! | GGCTTTAAAATTTCTTGGTT+TGG | - | chr4_1:27514992-27515011 | Msa0542450:CDS | 30.0% |
| !! | AAAATTTCTTGGTTTGGTTG+AGG | - | chr4_1:27514998-27515017 | Msa0542450:CDS | 30.0% |
| ATAACAGATTATTGTATGCC+AGG | - | chr4_1:27515161-27515180 | Msa0542450:intron | 30.0% | |
| TAACAGATTATTGTATGCCA+GGG | - | chr4_1:27515162-27515181 | Msa0542450:intron | 30.0% | |
| ! | CTGATTAGTGATTACTGATT+TGG | - | chr4_1:27515468-27515487 | Msa0542450:intron | 30.0% |
| ! | CGGTATGTCTTTAAAAGATT+TGG | + | chr4_1:27515583-27515602 | None:intergenic | 30.0% |
| TCTGAAGACATAATCACAAT+CGG | + | chr4_1:27515603-27515622 | None:intergenic | 30.0% | |
| ATGTGAAGTCTCACATATTA+TGG | - | chr4_1:27515741-27515760 | Msa0542450:intron | 30.0% | |
| !!! | TTGTATCAGATGTTTTGAAG+AGG | - | chr4_1:27515779-27515798 | Msa0542450:intron | 30.0% |
| !!! | TGTATCAGATGTTTTGAAGA+GGG | - | chr4_1:27515780-27515799 | Msa0542450:intron | 30.0% |
| TTTACATCTGATTGTTGAAC+TGG | + | chr4_1:27515828-27515847 | None:intergenic | 30.0% | |
| ACTCTTGATTTCATCAAATG+AGG | + | chr4_1:27515861-27515880 | None:intergenic | 30.0% | |
| ! | TTGATAGAATGTTGATTGAG+AGG | - | chr4_1:27514743-27514762 | Msa0542450:CDS | 30.0% |
| ! | CATGAAAAGAAGAAGTTTTG+AGG | + | chr4_1:27514771-27514790 | None:intergenic | 30.0% |
| ! | CTCAAAACTTCTTCTTTTCA+TGG | - | chr4_1:27514769-27514788 | Msa0542450:CDS | 30.0% |
| !! | GGCTTTAAAATTTCTTGGTT+TGG | - | chr4_1:27514992-27515011 | Msa0542450:CDS | 30.0% |
| !! | AAAATTTCTTGGTTTGGTTG+AGG | - | chr4_1:27514998-27515017 | Msa0542450:CDS | 30.0% |
| ATAACAGATTATTGTATGCC+AGG | - | chr4_1:27515161-27515180 | Msa0542450:intron | 30.0% | |
| TAACAGATTATTGTATGCCA+GGG | - | chr4_1:27515162-27515181 | Msa0542450:intron | 30.0% | |
| ! | CTGATTAGTGATTACTGATT+TGG | - | chr4_1:27515468-27515487 | Msa0542450:intron | 30.0% |
| ! | CGGTATGTCTTTAAAAGATT+TGG | + | chr4_1:27515583-27515602 | None:intergenic | 30.0% |
| TCTGAAGACATAATCACAAT+CGG | + | chr4_1:27515603-27515622 | None:intergenic | 30.0% | |
| ATGTGAAGTCTCACATATTA+TGG | - | chr4_1:27515741-27515760 | Msa0542450:intron | 30.0% | |
| !!! | TTGTATCAGATGTTTTGAAG+AGG | - | chr4_1:27515779-27515798 | Msa0542450:intron | 30.0% |
| !!! | TGTATCAGATGTTTTGAAGA+GGG | - | chr4_1:27515780-27515799 | Msa0542450:intron | 30.0% |
| TTTACATCTGATTGTTGAAC+TGG | + | chr4_1:27515828-27515847 | None:intergenic | 30.0% | |
| ACTCTTGATTTCATCAAATG+AGG | + | chr4_1:27515861-27515880 | None:intergenic | 30.0% | |
| TATCATCAACAGCCAAAACA+TGG | + | chr4_1:27514717-27514736 | None:intergenic | 35.0% | |
| TGATCTGCTCAGAAAAATCA+AGG | - | chr4_1:27515196-27515215 | Msa0542450:intron | 35.0% | |
| TATCATCAACAGCCAAAACA+TGG | + | chr4_1:27514717-27514736 | None:intergenic | 35.0% | |
| TGATCTGCTCAGAAAAATCA+AGG | - | chr4_1:27515196-27515215 | Msa0542450:intron | 35.0% | |
| ! | AGAGACTCAGTTCCATGTTT+TGG | - | chr4_1:27514702-27514721 | Msa0542450:CDS | 40.0% |
| ! | TACAATGGACTCTGCTAGTA+AGG | - | chr4_1:27514971-27514990 | Msa0542450:CDS | 40.0% |
| ATGTGGCTTCAGAAGTTCAT+GGG | - | chr4_1:27515021-27515040 | Msa0542450:intron | 40.0% | |
| CTGCTCAGAAAAATCAAGGT+AGG | - | chr4_1:27515200-27515219 | Msa0542450:intron | 40.0% | |
| CTTCAGAGAATGTTCCATCA+AGG | - | chr4_1:27515616-27515635 | Msa0542450:CDS | 40.0% | |
| ! | ATGTTCCATCAAGGATTAGC+AGG | - | chr4_1:27515625-27515644 | Msa0542450:intron | 40.0% |
| ! | CTGATTGTTGAACTGGTTTC+AGG | + | chr4_1:27515821-27515840 | None:intergenic | 40.0% |
| ! | AGAGACTCAGTTCCATGTTT+TGG | - | chr4_1:27514702-27514721 | Msa0542450:CDS | 40.0% |
| ! | TACAATGGACTCTGCTAGTA+AGG | - | chr4_1:27514971-27514990 | Msa0542450:CDS | 40.0% |
| ATGTGGCTTCAGAAGTTCAT+GGG | - | chr4_1:27515021-27515040 | Msa0542450:intron | 40.0% | |
| CTGCTCAGAAAAATCAAGGT+AGG | - | chr4_1:27515200-27515219 | Msa0542450:intron | 40.0% | |
| CTTCAGAGAATGTTCCATCA+AGG | - | chr4_1:27515616-27515635 | Msa0542450:CDS | 40.0% | |
| ! | ATGTTCCATCAAGGATTAGC+AGG | - | chr4_1:27515625-27515644 | Msa0542450:intron | 40.0% |
| ! | CTGATTGTTGAACTGGTTTC+AGG | + | chr4_1:27515821-27515840 | None:intergenic | 40.0% |
| !! | TCTTGGTTTGGTTGAGGATG+TGG | - | chr4_1:27515004-27515023 | Msa0542450:CDS | 45.0% |
| GATGTGGCTTCAGAAGTTCA+TGG | - | chr4_1:27515020-27515039 | Msa0542450:intron | 45.0% | |
| TGTGGCTTCAGAAGTTCATG+GGG | - | chr4_1:27515022-27515041 | Msa0542450:intron | 45.0% | |
| TATTGTATGCCAGGGATGAC+TGG | - | chr4_1:27515170-27515189 | Msa0542450:intron | 45.0% | |
| TCTCACCTGCTAATCCTTGA+TGG | + | chr4_1:27515633-27515652 | None:intergenic | 45.0% | |
| !! | TCTTGGTTTGGTTGAGGATG+TGG | - | chr4_1:27515004-27515023 | Msa0542450:CDS | 45.0% |
| GATGTGGCTTCAGAAGTTCA+TGG | - | chr4_1:27515020-27515039 | Msa0542450:intron | 45.0% | |
| TGTGGCTTCAGAAGTTCATG+GGG | - | chr4_1:27515022-27515041 | Msa0542450:intron | 45.0% | |
| TATTGTATGCCAGGGATGAC+TGG | - | chr4_1:27515170-27515189 | Msa0542450:intron | 45.0% | |
| TCTCACCTGCTAATCCTTGA+TGG | + | chr4_1:27515633-27515652 | None:intergenic | 45.0% | |
| AGATCATAGCCAGTCATCCC+TGG | + | chr4_1:27515182-27515201 | None:intergenic | 50.0% | |
| AGATCATAGCCAGTCATCCC+TGG | + | chr4_1:27515182-27515201 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 27514688 | 27515917 | 27514688 | ID=Msa0542450;Name=Msa0542450 |
| chr4_1 | mRNA | 27514688 | 27515917 | 27514688 | ID=Msa0542450-mRNA-1;Parent=Msa0542450;Name=Msa0542450-mRNA-1;_AED=0.20;_eAED=0.20;_QI=0|0|0|1|1|1|5|0|152 |
| chr4_1 | exon | 27515815 | 27515917 | 27515815 | ID=Msa0542450-mRNA-1:exon:7439;Parent=Msa0542450-mRNA-1 |
| chr4_1 | exon | 27515562 | 27515638 | 27515562 | ID=Msa0542450-mRNA-1:exon:7438;Parent=Msa0542450-mRNA-1 |
| chr4_1 | exon | 27515388 | 27515465 | 27515388 | ID=Msa0542450-mRNA-1:exon:7437;Parent=Msa0542450-mRNA-1 |
| chr4_1 | exon | 27514959 | 27515029 | 27514959 | ID=Msa0542450-mRNA-1:exon:7436;Parent=Msa0542450-mRNA-1 |
| chr4_1 | exon | 27514688 | 27514817 | 27514688 | ID=Msa0542450-mRNA-1:exon:7435;Parent=Msa0542450-mRNA-1 |
| chr4_1 | CDS | 27515815 | 27515917 | 27515815 | ID=Msa0542450-mRNA-1:cds;Parent=Msa0542450-mRNA-1 |
| chr4_1 | CDS | 27515562 | 27515638 | 27515562 | ID=Msa0542450-mRNA-1:cds;Parent=Msa0542450-mRNA-1 |
| chr4_1 | CDS | 27515388 | 27515465 | 27515388 | ID=Msa0542450-mRNA-1:cds;Parent=Msa0542450-mRNA-1 |
| chr4_1 | CDS | 27514959 | 27515029 | 27514959 | ID=Msa0542450-mRNA-1:cds;Parent=Msa0542450-mRNA-1 |
| chr4_1 | CDS | 27514688 | 27514817 | 27514688 | ID=Msa0542450-mRNA-1:cds;Parent=Msa0542450-mRNA-1 |
| Gene Sequence |
| Protein sequence |
