AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1162270


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1162270 MtrunA17_Chr7g0270511 97.606 710 17 0 1 710 665 1374 0.0 1435
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1162270 AT4G01860.2 49.213 699 292 12 13 705 667 1308 0.0 647
Msa1162270 AT4G01860.1 49.213 699 292 12 13 705 667 1308 0.0 647

Find 162 sgRNAs with CRISPR-Local

Find 332 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGATGGGAGTGTTACATTT+TGG 0.150669 7_4:-52882922 Msa1162270:CDS
TGCATTACTTGTTCCTTTAT+TGG 0.190433 7_4:-52883510 Msa1162270:CDS
AAAACAATAAATATCGATTA+TGG 0.196659 7_4:-52882392 Msa1162270:CDS
TTGGTGTCCTTCAAGTATTC+AGG 0.257776 7_4:+52882332 None:intergenic
TTGTTAAATGTGCTGGTTCC+AGG 0.258773 7_4:-52883809 Msa1162270:intron
TCTGTGTGTACTTGAATATT+TGG 0.272573 7_4:+52883995 None:intergenic
TTGTTGTCTTCAGATTTATT+TGG 0.277251 7_4:+52882662 None:intergenic
CATCTGTAGATTTCATAGTA+TGG 0.278027 7_4:-52885834 Msa1162270:CDS
ATACACGAAGATATGCTTCT+AGG 0.291653 7_4:-52884544 Msa1162270:CDS
GCAGTTGATGTTGCTGAAAA+TGG 0.293815 7_4:-52883948 Msa1162270:CDS
CCCTTACGTAAGCCTTATAA+AGG 0.311898 7_4:-52883455 Msa1162270:intron
TGGTACATCACCTAGAAAAT+AGG 0.323933 7_4:+52885645 None:intergenic
GTGCAAGACAAACCTTTATA+AGG 0.325547 7_4:+52883443 None:intergenic
CAAAGCGTGTCTTAACTTCT+TGG 0.340446 7_4:-52884157 Msa1162270:CDS
TTTCTAGTATATTGGCAAAA+TGG 0.347963 7_4:-52881435 Msa1162270:three_prime_UTR
CATTATCAGATTGCTGTTGC+TGG 0.351974 7_4:-52881626 Msa1162270:CDS
GCTACTTAAAAGCAGGAAAC+TGG 0.352365 7_4:-52884135 Msa1162270:CDS
AACCCCAGATGTAGCACATT+TGG 0.358029 7_4:-52882363 Msa1162270:CDS
GACAAAACAGGTGCCAATAA+AGG 0.361121 7_4:+52883497 None:intergenic
GAATTTAGTCAATGAGAATA+AGG 0.364171 7_4:-52885812 Msa1162270:intron
AAACAATAAATATCGATTAT+GGG 0.377190 7_4:-52882391 Msa1162270:CDS
GTGACCAAATGTGCTACATC+TGG 0.387061 7_4:+52882359 None:intergenic
AAATCAAGTTGGATTGCAAC+TGG 0.388225 7_4:-52884493 Msa1162270:CDS
AGATGCTACAGTTATGTTAC+GGG 0.393946 7_4:-52883668 Msa1162270:CDS
TTTGCAGATAACATCAAAGT+TGG 0.395590 7_4:-52882974 Msa1162270:intron
TAAATCTGAAGACAACAATA+TGG 0.397589 7_4:-52882657 Msa1162270:CDS
CAGCAACAGCAATCTGATAA+TGG 0.408486 7_4:+52881627 None:intergenic
ACGCACAGGGAGAGGAAGTC+AGG 0.409964 7_4:-52882816 Msa1162270:CDS
GTGTCTGGACGGATGGATCT+TGG 0.416857 7_4:-52881864 Msa1162270:CDS
TTGATCAGCGGGTCCGATGC+TGG 0.421084 7_4:-52881825 Msa1162270:CDS
CAACTTGATTTAGAAAATGA+TGG 0.426565 7_4:+52884505 None:intergenic
CCCACTGATATCAGTAAAGT+TGG 0.427018 7_4:+52884182 None:intergenic
CAGATTGCTGTTGCTGGAAG+AGG 0.429461 7_4:-52881620 Msa1162270:CDS
GCCCTAGCAGATAACGCTTC+AGG 0.429563 7_4:+52881745 None:intergenic
CATCATGCTGATTATCAGTT+CGG 0.430595 7_4:+52884096 None:intergenic
GCAGATAACGCTTCAGGCTC+TGG 0.434822 7_4:+52881751 None:intergenic
CAGATGCTACAGTTATGTTA+CGG 0.438759 7_4:-52883669 Msa1162270:CDS
TGTAGTAGAATTGATGCTTT+CGG 0.444030 7_4:+52882703 None:intergenic
GCAAAACAGTTCTTCATCTC+TGG 0.445470 7_4:+52885625 None:intergenic
AAATTCTGAGAAATTTCCTT+CGG 0.449159 7_4:-52882270 Msa1162270:CDS
CACGTTCTATTAGTTTACTC+TGG 0.450782 7_4:+52881794 None:intergenic
ACTCTCCAGGTATTGAGAAT+TGG 0.453323 7_4:-52884355 Msa1162270:CDS
AAGCTTCCACACTGTCAGTC+AGG 0.457149 7_4:+52882897 None:intergenic
TTAAGTTCGCTCCTCCCATC+AGG 0.465947 7_4:+52884230 None:intergenic
CTTCTTGGCTACTTAAAAGC+AGG 0.466077 7_4:-52884142 Msa1162270:CDS
TGTCTGGACGGATGGATCTT+GGG 0.468354 7_4:-52881863 Msa1162270:CDS
AAACGACCACGCACAGGGAG+AGG 0.476888 7_4:-52882824 Msa1162270:CDS
CACTGAACCTGAATACTTGA+AGG 0.482986 7_4:-52882339 Msa1162270:CDS
TGTGTACTTGAATATTTGGT+TGG 0.486913 7_4:+52883999 None:intergenic
TCCATGCCTCTGAAAATTGT+TGG 0.489686 7_4:-52881401 Msa1162270:three_prime_UTR
CACTGGATTAATGATATCGT+TGG 0.491864 7_4:-52884631 Msa1162270:CDS
GTTTGATTTAGGTACTCTCC+AGG 0.491977 7_4:-52884368 Msa1162270:intron
GGAAAGACAAGGCAACAATC+AGG 0.492374 7_4:-52882750 Msa1162270:CDS
ATGCAAATAGTGGACTTCTC+AGG 0.492584 7_4:-52881596 Msa1162270:CDS
ACCTTTATAAGGCTTACGTA+AGG 0.493114 7_4:+52883454 None:intergenic
GAGATAAACATGAGGATGAC+TGG 0.493426 7_4:-52883857 Msa1162270:CDS
TGACCAAATGTGCTACATCT+GGG 0.493927 7_4:+52882360 None:intergenic
TATGAAGGTGTCTGGACGGA+TGG 0.496015 7_4:-52881871 Msa1162270:intron
AGTTTGCATATGCAATTCCA+TGG 0.501496 7_4:-52884592 Msa1162270:CDS
TGAAAATTCCATGTGGTGGC+TGG 0.504996 7_4:-52885681 Msa1162270:CDS
TGTTAATACCATAAGCGAAA+GGG 0.511090 7_4:+52883634 None:intergenic
GGTACATTGGTTGTAGCTGA+TGG 0.513901 7_4:+52884251 None:intergenic
AATTGCATATGCAAACTTAG+AGG 0.515996 7_4:+52884598 None:intergenic
AACAATAAATATCGATTATG+GGG 0.516029 7_4:-52882390 Msa1162270:CDS
GGAACTATCATTAGTTTGCC+CGG 0.518035 7_4:+52882484 None:intergenic
AATGTTTACATTGTGATTAG+CGG 0.518261 7_4:-52882950 Msa1162270:CDS
CCATGCCTCTGAAAATTGTT+GGG 0.524674 7_4:-52881400 Msa1162270:three_prime_UTR
CCTCGCATCATTCATCGTGC+TGG 0.526737 7_4:+52881570 None:intergenic
ATTTCTAAATCTAATCCTGC+TGG 0.528324 7_4:-52881461 Msa1162270:three_prime_UTR
ACTGGATTAATGATATCGTT+GGG 0.528421 7_4:-52884630 Msa1162270:CDS
GTCAGGGTGGTAGACGGTGG+AGG 0.534764 7_4:-52882799 Msa1162270:CDS
GCATGTCAGTGGAAAGCCAC+TGG 0.538127 7_4:+52884021 None:intergenic
AGCCTGAAGCGTTATCTGCT+AGG 0.539105 7_4:-52881747 Msa1162270:CDS
TGCGTGTACAGCATAGTTAG+TGG 0.540931 7_4:-52882461 Msa1162270:CDS
TCCAACTTTACTGATATCAG+TGG 0.542613 7_4:-52884183 Msa1162270:CDS
ACCTTTCACAGAAGAGCTGT+GGG 0.544671 7_4:+52882247 None:intergenic
GCCTGAAGCGTTATCTGCTA+GGG 0.547128 7_4:-52881746 Msa1162270:CDS
TTCAACTGGACTTGATCAGC+GGG 0.549141 7_4:-52881836 Msa1162270:CDS
CATGTTTCAGAGATAAAAGC+CGG 0.549233 7_4:-52882503 Msa1162270:CDS
CTTCTTCAATGACGTTCCAG+TGG 0.549653 7_4:-52884037 Msa1162270:CDS
TTTAAGCAGTGGGTTATCAA+AGG 0.551705 7_4:-52882771 Msa1162270:CDS
GCTGGATCACTGATTTCTGA+AGG 0.553040 7_4:-52883900 Msa1162270:CDS
GTGATTAGCGGATCTACTGA+TGG 0.553847 7_4:-52882938 Msa1162270:CDS
ATGTTGGAGGATCAGCTGTA+AGG 0.554309 7_4:-52884307 Msa1162270:CDS
GGAGGAGATCTTTAAGCAGT+GGG 0.558558 7_4:-52882781 Msa1162270:CDS
TACCTTTCACAGAAGAGCTG+TGG 0.559530 7_4:+52882246 None:intergenic
AGCATCAATTCTACTACACA+TGG 0.563304 7_4:-52882698 Msa1162270:CDS
ATGGACCAATTCTCAATACC+TGG 0.564208 7_4:+52884350 None:intergenic
TGGAAGAGGGATGCAAATAG+TGG 0.564312 7_4:-52881606 Msa1162270:CDS
GCCCACAGCTCTTCTGTGAA+AGG 0.565469 7_4:-52882248 Msa1162270:intron
AGATTTATTTGGCACTGAAG+AGG 0.566451 7_4:+52882673 None:intergenic
ACAGAAGAGCTGTGGGCCGA+AGG 0.569211 7_4:+52882254 None:intergenic
GCTCCTCCCATCAGGTACAT+TGG 0.569231 7_4:+52884238 None:intergenic
GAAGTCAGGGTGGTAGACGG+TGG 0.573707 7_4:-52882802 Msa1162270:CDS
GAGGAAGTCAGGGTGGTAGA+CGG 0.574247 7_4:-52882805 Msa1162270:CDS
GCGTGTACAGCATAGTTAGT+GGG 0.574259 7_4:-52882460 Msa1162270:CDS
GGAGACAGTTGACACCAGAT+TGG 0.574415 7_4:+52882525 None:intergenic
TCATCAAGAAGCTATGCAGC+AGG 0.576180 7_4:-52885862 Msa1162270:CDS
GGACGCCGCCAGCCACCACA+TGG 0.576626 7_4:+52885673 None:intergenic
AGATATACAGAAAATAATGT+GGG 0.579058 7_4:-52883975 Msa1162270:CDS
CCTTTATAAGGCTTACGTAA+GGG 0.582662 7_4:+52883455 None:intergenic
CGAACTTAATGCTGCTGATG+AGG 0.583851 7_4:-52884216 Msa1162270:CDS
TGGAGGAGATCTTTAAGCAG+TGG 0.583944 7_4:-52882782 Msa1162270:CDS
ATATGCTGCAATGACAAAAC+AGG 0.584549 7_4:+52883485 None:intergenic
TGATAATCAGCATGATGCAA+AGG 0.587176 7_4:-52884090 Msa1162270:CDS
TCAGCCTTAGTTTCCAACAC+GGG 0.588107 7_4:+52882605 None:intergenic
GCTACAACCAATGTACCTGA+TGG 0.588514 7_4:-52884245 Msa1162270:CDS
ATTGCATATGCAAACTTAGA+GGG 0.589333 7_4:+52884599 None:intergenic
AGGAATGTATCTCTCTCCCA+TGG 0.589689 7_4:+52884575 None:intergenic
TAAATCAGAATAATTTATGG+AGG 0.591288 7_4:-52881516 Msa1162270:three_prime_UTR
TTGTTAATACCATAAGCGAA+AGG 0.594651 7_4:+52883633 None:intergenic
TGACTTCCTCTCCCTGTGCG+TGG 0.594803 7_4:+52882818 None:intergenic
TTGCTTGGTGAGCATGTTGG+AGG 0.595216 7_4:-52884320 Msa1162270:CDS
CAGCCTTAGTTTCCAACACG+GGG 0.596151 7_4:+52882606 None:intergenic
TGGTCCATGTCAAAATTGCT+TGG 0.597582 7_4:-52884335 Msa1162270:CDS
TATCTGCTAGGGCATGTAGC+AGG 0.597762 7_4:-52881735 Msa1162270:intron
GTTTGCATATGCAATTCCAT+GGG 0.601750 7_4:-52884591 Msa1162270:CDS
TTTCAACTGGACTTGATCAG+CGG 0.601937 7_4:-52881837 Msa1162270:CDS
CTGGATCACTGATTTCTGAA+GGG 0.602956 7_4:-52883899 Msa1162270:CDS
TGGATCACTGATTTCTGAAG+GGG 0.604156 7_4:-52883898 Msa1162270:CDS
CGCACAGGGAGAGGAAGTCA+GGG 0.604321 7_4:-52882815 Msa1162270:CDS
TAATATATATACATAGACAC+TGG 0.606481 7_4:-52884648 Msa1162270:CDS
TCACCTAGAAAATAGGAATG+AGG 0.609684 7_4:+52885652 None:intergenic
CGTCATTGAAGAAGACATGC+TGG 0.609954 7_4:+52884046 None:intergenic
CTACAACCAATGTACCTGAT+GGG 0.612872 7_4:-52884244 Msa1162270:CDS
AGATTGCTGTTGCTGGAAGA+GGG 0.612964 7_4:-52881619 Msa1162270:CDS
TCTGGTGAAGATGCCAGCAT+CGG 0.614137 7_4:+52881812 None:intergenic
TATTTCACATATTTCCGCTG+AGG 0.614840 7_4:+52882577 None:intergenic
ATATACTAGAAAATACCAGC+AGG 0.615726 7_4:+52881446 None:intergenic
TGATTAGCGGATCTACTGAT+GGG 0.616349 7_4:-52882937 Msa1162270:CDS
CAGATATACAGAAAATAATG+TGG 0.617032 7_4:-52883976 Msa1162270:CDS
TTGCAACTGGATGTGAAGAC+GGG 0.620552 7_4:-52884480 Msa1162270:CDS
ATTGCAACTGGATGTGAAGA+CGG 0.621857 7_4:-52884481 Msa1162270:CDS
CGTGTACAGCATAGTTAGTG+GGG 0.634510 7_4:-52882459 Msa1162270:CDS
ATATTTGGTTGGCATGTCAG+TGG 0.634581 7_4:+52884010 None:intergenic
ACGGGACTGTGAGATTGACT+TGG 0.637311 7_4:-52884462 Msa1162270:intron
AAATTGCTTGGTGAGCATGT+TGG 0.639529 7_4:-52884323 Msa1162270:CDS
ATCAGCCTTAGTTTCCAACA+CGG 0.640059 7_4:+52882604 None:intergenic
GACCAAATGTGCTACATCTG+GGG 0.641048 7_4:+52882361 None:intergenic
ATGTTTCAGAGATAAAAGCC+GGG 0.646123 7_4:-52882502 Msa1162270:CDS
AAATTCCATGTGGTGGCTGG+CGG 0.646824 7_4:-52885678 Msa1162270:CDS
TGTTTCTGTTGATAACAACT+CGG 0.657144 7_4:-52885893 Msa1162270:CDS
CCAACTTTACTGATATCAGT+GGG 0.660367 7_4:-52884182 Msa1162270:CDS
TTGGTGAAAATTCCATGTGG+TGG 0.667441 7_4:-52885685 Msa1162270:CDS
GGATCACTGATTTCTGAAGG+GGG 0.669423 7_4:-52883897 Msa1162270:CDS
ATCTTCGTGTATAAAGCACA+AGG 0.673269 7_4:+52884555 None:intergenic
TCAGTCAATTCATCATCTCG+TGG 0.680018 7_4:-52882429 Msa1162270:CDS
CCAGCACGATGAATGATGCG+AGG 0.680997 7_4:-52881570 Msa1162270:exon
CAACCAATGTACCTGATGGG+AGG 0.681625 7_4:-52884241 Msa1162270:CDS
GATCACTGATTTCTGAAGGG+GGG 0.687071 7_4:-52883896 Msa1162270:CDS
GGGTTATCAAAGGAAAGACA+AGG 0.689913 7_4:-52882761 Msa1162270:CDS
GATATACAGAAAATAATGTG+GGG 0.690770 7_4:-52883974 Msa1162270:CDS
ACAGGGAGAGGAAGTCAGGG+TGG 0.706581 7_4:-52882812 Msa1162270:CDS
GCATCAATTCTACTACACAT+GGG 0.707863 7_4:-52882697 Msa1162270:CDS
TATATTGGCAAAATGGTCTG+TGG 0.709393 7_4:-52881428 Msa1162270:three_prime_UTR
GTGTACAGCATAGTTAGTGG+GGG 0.709739 7_4:-52882458 Msa1162270:CDS
TTGGGACCTGACTGACAGTG+TGG 0.711195 7_4:-52882903 Msa1162270:CDS
CTTGGTCAGAGATAAACATG+AGG 0.717706 7_4:-52883865 Msa1162270:CDS
TAAGGCTGATGATTCCTCAG+CGG 0.730278 7_4:-52882591 Msa1162270:CDS
AGCCTTAGTTTCCAACACGG+GGG 0.749801 7_4:+52882607 None:intergenic
GAAATAGATACATCTGAACG+AGG 0.760834 7_4:+52881479 None:intergenic
CAGTTGGTGAAAATTCCATG+TGG 0.793723 7_4:-52885688 Msa1162270:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTATGAATTTTCAATAAA+TGG - chr7_4:52882041-52882060 Msa1162270:intron 10.0%
!!! ATTCTAGTATATATTTTAAA+AGG + chr7_4:52884180-52884199 None:intergenic 10.0%
!!! ACTTTTATTTTATTTTATGA+AGG - chr7_4:52885356-52885375 Msa1162270:intron 10.0%
!!! TTTTAAATCAGAATAATTTA+TGG - chr7_4:52885723-52885742 Msa1162270:intron 10.0%
!!! TTCAAATTATTTGAGTTATA+CGG + chr7_4:52883492-52883511 None:intergenic 15.0%
!!! TTCTATTTTGTATATTTTTC+AGG - chr7_4:52883519-52883538 Msa1162270:CDS 15.0%
!! ATATACTAGAATAAATTTAG+AGG - chr7_4:52884188-52884207 Msa1162270:CDS 15.0%
!!! AAAACAATAAATATCGATTA+TGG - chr7_4:52884850-52884869 Msa1162270:intron 15.0%
!!! AAACAATAAATATCGATTAT+GGG - chr7_4:52884851-52884870 Msa1162270:intron 15.0%
!!! TTTATCATTTTATCATAACA+AGG + chr7_4:52885212-52885231 None:intergenic 15.0%
!! TATATTTATGAAAGAAAGTT+TGG - chr7_4:52885313-52885332 Msa1162270:intron 15.0%
!! ACTATAATTCACTATATTTG+AGG - chr7_4:52881787-52881806 Msa1162270:CDS 20.0%
!! TACTGAAGCAATAAAATAAA+GGG + chr7_4:52882349-52882368 None:intergenic 20.0%
!! TTACTGAAGCAATAAAATAA+AGG + chr7_4:52882350-52882369 None:intergenic 20.0%
!! TAATATATATACATAGACAC+TGG - chr7_4:52882594-52882613 Msa1162270:CDS 20.0%
!! AGATATACAGAAAATAATGT+GGG - chr7_4:52883267-52883286 Msa1162270:intron 20.0%
!! TAAAATAAAAATTGATGCTG+AGG - chr7_4:52883320-52883339 Msa1162270:intron 20.0%
!! AAAAAGTTCATAGAATTTGA+TGG + chr7_4:52883641-52883660 None:intergenic 20.0%
!! TCATCATTAATTGTGATATT+CGG + chr7_4:52883969-52883988 None:intergenic 20.0%
!! ACAATTTCATCTTTCAATTT+AGG + chr7_4:52884027-52884046 None:intergenic 20.0%
!!! ATGAAATTGTCTCAATATTT+TGG - chr7_4:52884037-52884056 Msa1162270:CDS 20.0%
!! TACTTATAAAATAGTGTGAT+AGG - chr7_4:52884062-52884081 Msa1162270:CDS 20.0%
!!! TATTTTAAAAGGTATGACAA+AGG + chr7_4:52884169-52884188 None:intergenic 20.0%
!!! AACAATAAATATCGATTATG+GGG - chr7_4:52884852-52884871 Msa1162270:intron 20.0%
!! TAAATCAGAATAATTTATGG+AGG - chr7_4:52885726-52885745 Msa1162270:intron 20.0%
! GAATTTAGTCAATGAGAATA+AGG - chr7_4:52881430-52881449 Msa1162270:three_prime_UTR 25.0%
! TCTTCCAAAAATTCTTTAGA+GGG - chr7_4:52881761-52881780 Msa1162270:CDS 25.0%
!!! TCATTATATGCATTTGGTTT+TGG - chr7_4:52881810-52881829 Msa1162270:CDS 25.0%
! AATTCCATACAATTGCTTTA+AGG - chr7_4:52881843-52881862 Msa1162270:CDS 25.0%
!! TGATTGGTTAAACCTAATAA+TGG - chr7_4:52881876-52881895 Msa1162270:intron 25.0%
!! GATTGGTTAAACCTAATAAT+GGG - chr7_4:52881877-52881896 Msa1162270:intron 25.0%
! ATTGGTTAAACCTAATAATG+GGG - chr7_4:52881878-52881897 Msa1162270:intron 25.0%
! TACGGTTAAATAAAAGGATT+TGG - chr7_4:52881911-52881930 Msa1162270:intron 25.0%
!!! TTCTAGCTTCTTTAAATTCA+CGG + chr7_4:52882107-52882126 None:intergenic 25.0%
!! ATTTTATTGCTTCAGTAACA+TGG - chr7_4:52882352-52882371 Msa1162270:CDS 25.0%
!! TTTTATTGCTTCAGTAACAT+GGG - chr7_4:52882353-52882372 Msa1162270:CDS 25.0%
! TTATTTCATCCTGTAAAAGT+TGG + chr7_4:52882577-52882596 None:intergenic 25.0%
! CAACTTGATTTAGAAAATGA+TGG + chr7_4:52882740-52882759 None:intergenic 25.0%
!! CATCATTTTCTAAATCAAGT+TGG - chr7_4:52882738-52882757 Msa1162270:CDS 25.0%
! CAGATATACAGAAAATAATG+TGG - chr7_4:52883266-52883285 Msa1162270:intron 25.0%
! GATATACAGAAAATAATGTG+GGG - chr7_4:52883268-52883287 Msa1162270:intron 25.0%
! AATGTTTACATTGTGATTAG+CGG - chr7_4:52884292-52884311 Msa1162270:CDS 25.0%
! TTGTTGTCTTCAGATTTATT+TGG + chr7_4:52884583-52884602 None:intergenic 25.0%
! TAAATCTGAAGACAACAATA+TGG - chr7_4:52884585-52884604 Msa1162270:CDS 25.0%
!!! ATTGGTGAACATTTTTCAAA+AGG + chr7_4:52884702-52884721 None:intergenic 25.0%
!!! TCTGCTATGATTTTGAAAAT+TGG + chr7_4:52884932-52884951 None:intergenic 25.0%
!! AAATTCTGAGAAATTTCCTT+CGG - chr7_4:52884972-52884991 Msa1162270:intron 25.0%
! ATTATTGACACACAAAAAGT+AGG + chr7_4:52885050-52885069 None:intergenic 25.0%
! AGTAAATGAAAAGAATCAGT+GGG + chr7_4:52885131-52885150 None:intergenic 25.0%
! AAGTAAATGAAAAGAATCAG+TGG + chr7_4:52885132-52885151 None:intergenic 25.0%
!! ATAGATTTAAGATTCTCAGT+GGG + chr7_4:52885170-52885189 None:intergenic 25.0%
! ATTTGATAAAGTGGTTCAAA+TGG + chr7_4:52885261-52885280 None:intergenic 25.0%
!!! TTTTATTTTATGAAGGTGTC+TGG - chr7_4:52885363-52885382 Msa1162270:intron 25.0%
!! TTTCTAGTATATTGGCAAAA+TGG - chr7_4:52885807-52885826 Msa1162270:intron 25.0%
!! TGTTTCTGTTGATAACAACT+CGG - chr7_4:52881349-52881368 Msa1162270:three_prime_UTR 30.0%
CATCTGTAGATTTCATAGTA+TGG - chr7_4:52881408-52881427 Msa1162270:three_prime_UTR 30.0%
!! GAACTGTTTTGCTTTTGTTA+AGG - chr7_4:52881628-52881647 Msa1162270:CDS 30.0%
CTCTTCCAAAAATTCTTTAG+AGG - chr7_4:52881760-52881779 Msa1162270:CDS 30.0%
TTGAGGTCATTATATGCATT+TGG - chr7_4:52881804-52881823 Msa1162270:CDS 30.0%
GTTTAACCAATCAAAAAGTG+AGG + chr7_4:52881869-52881888 None:intergenic 30.0%
!! TCCTTTTATTTAACCGTATC+CGG + chr7_4:52881909-52881928 None:intergenic 30.0%
!! ATAACCGTCGATTTAAAAAC+CGG - chr7_4:52881984-52882003 Msa1162270:intron 30.0%
! TATTTTACCACAATCTCAAC+CGG + chr7_4:52882006-52882025 None:intergenic 30.0%
! TGTTTAACTGACTTTGATTG+AGG + chr7_4:52882220-52882239 None:intergenic 30.0%
GGAGATTGACAATAAGTATA+CGG + chr7_4:52882328-52882347 None:intergenic 30.0%
TCTAATAAAAAGGTGGGTAT+TGG + chr7_4:52882475-52882494 None:intergenic 30.0%
! AAAGTTGGAATGATTTGTCA+GGG + chr7_4:52882562-52882581 None:intergenic 30.0%
! AAAAGTTGGAATGATTTGTC+AGG + chr7_4:52882563-52882582 None:intergenic 30.0%
! CAAATCATTCCAACTTTTAC+AGG - chr7_4:52882565-52882584 Msa1162270:CDS 30.0%
ACTGGATTAATGATATCGTT+GGG - chr7_4:52882612-52882631 Msa1162270:CDS 30.0%
ATTGCATATGCAAACTTAGA+GGG + chr7_4:52882646-52882665 None:intergenic 30.0%
AATTGCATATGCAAACTTAG+AGG + chr7_4:52882647-52882666 None:intergenic 30.0%
! TGTGTCTGTTTGTTTGATTT+AGG - chr7_4:52882863-52882882 Msa1162270:CDS 30.0%
TGTGTACTTGAATATTTGGT+TGG + chr7_4:52883246-52883265 None:intergenic 30.0%
TCTGTGTGTACTTGAATATT+TGG + chr7_4:52883250-52883269 None:intergenic 30.0%
! TAATTTTACCCTTTCGCTTA+TGG - chr7_4:52883600-52883619 Msa1162270:intron 30.0%
TGTTAATACCATAAGCGAAA+GGG + chr7_4:52883611-52883630 None:intergenic 30.0%
TTGTTAATACCATAAGCGAA+AGG + chr7_4:52883612-52883631 None:intergenic 30.0%
TGCATTACTTGTTCCTTTAT+TGG - chr7_4:52883732-52883751 Msa1162270:intron 30.0%
CTCATAACCAATCACTTAAA+TGG + chr7_4:52883826-52883845 None:intergenic 30.0%
TATGAAAAGAAGGGATTAAG+TGG + chr7_4:52883858-52883877 None:intergenic 30.0%
! CTTAATCCCTTCTTTTCATA+TGG - chr7_4:52883858-52883877 Msa1162270:CDS 30.0%
CTACATCCATATGAAAAGAA+GGG + chr7_4:52883867-52883886 None:intergenic 30.0%
TCTACATCCATATGAAAAGA+AGG + chr7_4:52883868-52883887 None:intergenic 30.0%
TAATTGTGATATTCGGTAAC+AGG + chr7_4:52883962-52883981 None:intergenic 30.0%
ATCTTTCGTTTCATATACTG+AGG + chr7_4:52884119-52884138 None:intergenic 30.0%
AGTTCAGACATATTAAAGCA+GGG + chr7_4:52884244-52884263 None:intergenic 30.0%
AAGTTCAGACATATTAAAGC+AGG + chr7_4:52884245-52884264 None:intergenic 30.0%
TTTGCAGATAACATCAAAGT+TGG - chr7_4:52884268-52884287 Msa1162270:CDS 30.0%
TGTAGTAGAATTGATGCTTT+CGG + chr7_4:52884542-52884561 None:intergenic 30.0%
!! ACATTTTTCAAAAGGTGTAG+AGG + chr7_4:52884694-52884713 None:intergenic 30.0%
TTGAAAAATGTTCACCAATC+TGG - chr7_4:52884703-52884722 Msa1162270:intron 30.0%
ACACAAAAAGTAGGTAGATA+GGG + chr7_4:52885041-52885060 None:intergenic 30.0%
! GATAGATTTAAGATTCTCAG+TGG + chr7_4:52885171-52885190 None:intergenic 30.0%
TTAAATCTATCATTCCCGAT+AGG - chr7_4:52885180-52885199 Msa1162270:intron 30.0%
ATAACAAGGATCAATCCTAT+CGG + chr7_4:52885198-52885217 None:intergenic 30.0%
TAAAGTGGTTCAAATGGATA+TGG + chr7_4:52885255-52885274 None:intergenic 30.0%
CTAGCTTCAATTTGATAAAG+TGG + chr7_4:52885270-52885289 None:intergenic 30.0%
ATCAAATTGAAGCTAGTGTA+TGG - chr7_4:52885274-52885293 Msa1162270:intron 30.0%
ATGTAGCAGGTGATTATTAT+AGG - chr7_4:52885520-52885539 Msa1162270:intron 30.0%
TTATTATAGGAGTGAATGAC+TGG - chr7_4:52885533-52885552 Msa1162270:intron 30.0%
TATTATAGGAGTGAATGACT+GGG - chr7_4:52885534-52885553 Msa1162270:intron 30.0%
ATTTCTAAATCTAATCCTGC+TGG - chr7_4:52885781-52885800 Msa1162270:intron 30.0%
ATATACTAGAAAATACCAGC+AGG + chr7_4:52885799-52885818 None:intergenic 30.0%
!! GCTGGTATTTTCTAGTATAT+TGG - chr7_4:52885799-52885818 Msa1162270:intron 30.0%
TCACCTAGAAAATAGGAATG+AGG + chr7_4:52881593-52881612 None:intergenic 35.0%
TGGTACATCACCTAGAAAAT+AGG + chr7_4:52881600-52881619 None:intergenic 35.0%
! GGTGTCATATGATTTAGGAT+AGG + chr7_4:52881718-52881737 None:intergenic 35.0%
!!! GTAACTTTTTCAGTATGAGC+AGG + chr7_4:52881739-52881758 None:intergenic 35.0%
!! TCGTCCCTCTAAAGAATTTT+TGG + chr7_4:52881768-52881787 None:intergenic 35.0%
!!! CATTTGGTTTTGGCTTGAAT+AGG - chr7_4:52881820-52881839 Msa1162270:CDS 35.0%
!!! TTAAGGCCTCACTTTTTGAT+TGG - chr7_4:52881860-52881879 Msa1162270:CDS 35.0%
ACCGGATACGGTTAAATAAA+AGG - chr7_4:52881905-52881924 Msa1162270:intron 35.0%
!! TCAACCGGTTTTTAAATCGA+CGG + chr7_4:52881991-52882010 None:intergenic 35.0%
TTAAAAACCGGTTGAGATTG+TGG - chr7_4:52881996-52882015 Msa1162270:intron 35.0%
CTCTAAACACGTCATAAATC+TGG + chr7_4:52882075-52882094 None:intergenic 35.0%
!! AAGCTAGAAATCCTAGCTTT+TGG - chr7_4:52882118-52882137 Msa1162270:intron 35.0%
GGATTAAGTATCTGTTTCCA+CGG + chr7_4:52882162-52882181 None:intergenic 35.0%
!! ATTTGGTTGCTCTAAAGTGA+AGG + chr7_4:52882197-52882216 None:intergenic 35.0%
! ACTGACTTTGATTGAGGATT+TGG + chr7_4:52882214-52882233 None:intergenic 35.0%
GAAAACTGCACATATCAAGA+AGG + chr7_4:52882249-52882268 None:intergenic 35.0%
TTTCCATCCATACATATCCA+TGG - chr7_4:52882281-52882300 Msa1162270:CDS 35.0%
TTCCATCCATACATATCCAT+GGG - chr7_4:52882282-52882301 Msa1162270:CDS 35.0%
CTGGTGTCTAATAAAAAGGT+GGG + chr7_4:52882481-52882500 None:intergenic 35.0%
ACTGGTGTCTAATAAAAAGG+TGG + chr7_4:52882482-52882501 None:intergenic 35.0%
! AGGACTGGTGTCTAATAAAA+AGG + chr7_4:52882485-52882504 None:intergenic 35.0%
CACTGGATTAATGATATCGT+TGG - chr7_4:52882611-52882630 Msa1162270:CDS 35.0%
AGTTTGCATATGCAATTCCA+TGG - chr7_4:52882650-52882669 Msa1162270:CDS 35.0%
GTTTGCATATGCAATTCCAT+GGG - chr7_4:52882651-52882670 Msa1162270:CDS 35.0%
ATCTTCGTGTATAAAGCACA+AGG + chr7_4:52882690-52882709 None:intergenic 35.0%
ATACACGAAGATATGCTTCT+AGG - chr7_4:52882698-52882717 Msa1162270:CDS 35.0%
!! AAATCAAGTTGGATTGCAAC+TGG - chr7_4:52882749-52882768 Msa1162270:CDS 35.0%
ACACACATTAGGAGTTTATG+AGG + chr7_4:52882848-52882867 None:intergenic 35.0%
CAAACAAACAGACACACATT+AGG + chr7_4:52882859-52882878 None:intergenic 35.0%
TCCAACTTTACTGATATCAG+TGG - chr7_4:52883059-52883078 Msa1162270:intron 35.0%
CCAACTTTACTGATATCAGT+GGG - chr7_4:52883060-52883079 Msa1162270:intron 35.0%
! CATCATGCTGATTATCAGTT+CGG + chr7_4:52883149-52883168 None:intergenic 35.0%
TGATAATCAGCATGATGCAA+AGG - chr7_4:52883152-52883171 Msa1162270:intron 35.0%
ATAAAAATTGATGCTGAGGC+TGG - chr7_4:52883324-52883343 Msa1162270:intron 35.0%
! GCTTTTCTTGTTAAATGTGC+TGG - chr7_4:52883426-52883445 Msa1162270:intron 35.0%
CAGATGCTACAGTTATGTTA+CGG - chr7_4:52883573-52883592 Msa1162270:intron 35.0%
AGATGCTACAGTTATGTTAC+GGG - chr7_4:52883574-52883593 Msa1162270:intron 35.0%
AAACCTGCCATCAAGTAAAA+GGG + chr7_4:52883707-52883726 None:intergenic 35.0%
ATATGCTGCAATGACAAAAC+AGG + chr7_4:52883760-52883779 None:intergenic 35.0%
CCTTTATAAGGCTTACGTAA+GGG + chr7_4:52883790-52883809 None:intergenic 35.0%
ACCTTTATAAGGCTTACGTA+AGG + chr7_4:52883791-52883810 None:intergenic 35.0%
GTGCAAGACAAACCTTTATA+AGG + chr7_4:52883802-52883821 None:intergenic 35.0%
TTGCACTCCATTTAAGTGAT+TGG - chr7_4:52883816-52883835 Msa1162270:CDS 35.0%
GCTCGTCTCTTCAAAATTTA+AGG - chr7_4:52883927-52883946 Msa1162270:CDS 35.0%
CGTCTCTTCAAAATTTAAGG+CGG - chr7_4:52883930-52883949 Msa1162270:CDS 35.0%
GTTTCATATACTGAGGAACA+AGG + chr7_4:52884112-52884131 None:intergenic 35.0%
! AAAAGGTATGACAAAGGAAC+AGG + chr7_4:52884163-52884182 None:intergenic 35.0%
TTAAAGCAGGGAAATAGATC+AGG + chr7_4:52884232-52884251 None:intergenic 35.0%
!!! TGATGGGAGTGTTACATTTT+GGG - chr7_4:52884321-52884340 Msa1162270:CDS 35.0%
!! TTTAAGCAGTGGGTTATCAA+AGG - chr7_4:52884471-52884490 Msa1162270:CDS 35.0%
GACTTCAAAAGCCAAAAACA+AGG - chr7_4:52884516-52884535 Msa1162270:CDS 35.0%
AGCATCAATTCTACTACACA+TGG - chr7_4:52884544-52884563 Msa1162270:CDS 35.0%
GCATCAATTCTACTACACAT+GGG - chr7_4:52884545-52884564 Msa1162270:CDS 35.0%
! AGATTTATTTGGCACTGAAG+AGG + chr7_4:52884572-52884591 None:intergenic 35.0%
TATTTCACATATTTCCGCTG+AGG + chr7_4:52884668-52884687 None:intergenic 35.0%
CATGTTTCAGAGATAAAAGC+CGG - chr7_4:52884739-52884758 Msa1162270:intron 35.0%
ATGTTTCAGAGATAAAAGCC+GGG - chr7_4:52884740-52884759 Msa1162270:intron 35.0%
CACACAAAAAGTAGGTAGAT+AGG + chr7_4:52885042-52885061 None:intergenic 35.0%
GTGTGTCAATAATGAACAGT+CGG - chr7_4:52885057-52885076 Msa1162270:intron 35.0%
TAACAAGGATCAATCCTATC+GGG + chr7_4:52885197-52885216 None:intergenic 35.0%
!!! ATTTTATGAAGGTGTCTGGA+CGG - chr7_4:52885367-52885386 Msa1162270:intron 35.0%
! CACGTTCTATTAGTTTACTC+TGG + chr7_4:52885451-52885470 None:intergenic 35.0%
TTCTTTCTCTTAACACTTGC+TGG - chr7_4:52885577-52885596 Msa1162270:intron 35.0%
GAAATAGATACATCTGAACG+AGG + chr7_4:52885766-52885785 None:intergenic 35.0%
TATATTGGCAAAATGGTCTG+TGG - chr7_4:52885814-52885833 Msa1162270:CDS 35.0%
! AGATTCCCAACAATTTTCAG+AGG + chr7_4:52885850-52885869 None:intergenic 35.0%
GCTACGATATCATGTGCATA+TGG - chr7_4:52881525-52881544 Msa1162270:three_prime_UTR 40.0%
!! GTGCATATGGTGTTATCAGT+TGG - chr7_4:52881538-52881557 Msa1162270:three_prime_UTR 40.0%
!! CAGTTGGTGAAAATTCCATG+TGG - chr7_4:52881554-52881573 Msa1162270:three_prime_UTR 40.0%
TTGGTGAAAATTCCATGTGG+TGG - chr7_4:52881557-52881576 Msa1162270:three_prime_UTR 40.0%
! CGTCCTCATTCCTATTTTCT+AGG - chr7_4:52881587-52881606 Msa1162270:CDS 40.0%
GCAAAACAGTTCTTCATCTC+TGG + chr7_4:52881620-52881639 None:intergenic 40.0%
! GAGCAGGTGTCATATGATTT+AGG + chr7_4:52881723-52881742 None:intergenic 40.0%
GAGGCCTTAAAGCAATTGTA+TGG + chr7_4:52881850-52881869 None:intergenic 40.0%
! ACCTAATAATGGGGATAGAC+CGG - chr7_4:52881887-52881906 Msa1162270:intron 40.0%
TAAAGTACACCCCACTATAG+AGG + chr7_4:52881939-52881958 None:intergenic 40.0%
!! CTAGAAATCCTAGCTTTTGG+TGG - chr7_4:52882121-52882140 Msa1162270:intron 40.0%
AAGTGAAGGATGCACTTCAA+AGG + chr7_4:52882183-52882202 None:intergenic 40.0%
TCCATCCATACATATCCATG+GGG - chr7_4:52882283-52882302 Msa1162270:CDS 40.0%
TTGTTTGTTTCAGATCCCCA+TGG + chr7_4:52882301-52882320 None:intergenic 40.0%
! ACACCAGTCCTATTTTCTTG+TGG - chr7_4:52882494-52882513 Msa1162270:CDS 40.0%
! CACCAGTCCTATTTTCTTGT+GGG - chr7_4:52882495-52882514 Msa1162270:CDS 40.0%
ACAACCACCCACAAGAAAAT+AGG + chr7_4:52882505-52882524 None:intergenic 40.0%
ATTGCAACTGGATGTGAAGA+CGG - chr7_4:52882761-52882780 Msa1162270:CDS 40.0%
! GTTTGATTTAGGTACTCTCC+AGG - chr7_4:52882874-52882893 Msa1162270:CDS 40.0%
!! ACTCTCCAGGTATTGAGAAT+TGG - chr7_4:52882887-52882906 Msa1162270:CDS 40.0%
ATGGACCAATTCTCAATACC+TGG + chr7_4:52882895-52882914 None:intergenic 40.0%
TGGTCCATGTCAAAATTGCT+TGG - chr7_4:52882907-52882926 Msa1162270:CDS 40.0%
!! CTCACCAAGCAATTTTGACA+TGG + chr7_4:52882914-52882933 None:intergenic 40.0%
! AAATTGCTTGGTGAGCATGT+TGG - chr7_4:52882919-52882938 Msa1162270:CDS 40.0%
CTACAACCAATGTACCTGAT+GGG - chr7_4:52882998-52883017 Msa1162270:intron 40.0%
CCCACTGATATCAGTAAAGT+TGG + chr7_4:52883063-52883082 None:intergenic 40.0%
CAAAGCGTGTCTTAACTTCT+TGG - chr7_4:52883085-52883104 Msa1162270:intron 40.0%
CTTCTTGGCTACTTAAAAGC+AGG - chr7_4:52883100-52883119 Msa1162270:intron 40.0%
GCTACTTAAAAGCAGGAAAC+TGG - chr7_4:52883107-52883126 Msa1162270:intron 40.0%
ATATTTGGTTGGCATGTCAG+TGG + chr7_4:52883235-52883254 None:intergenic 40.0%
! GCAGTTGATGTTGCTGAAAA+TGG - chr7_4:52883294-52883313 Msa1162270:intron 40.0%
!! CTGGATCACTGATTTCTGAA+GGG - chr7_4:52883343-52883362 Msa1162270:intron 40.0%
!! TGGATCACTGATTTCTGAAG+GGG - chr7_4:52883344-52883363 Msa1162270:intron 40.0%
CTTGGTCAGAGATAAACATG+AGG - chr7_4:52883377-52883396 Msa1162270:intron 40.0%
GAGATAAACATGAGGATGAC+TGG - chr7_4:52883385-52883404 Msa1162270:intron 40.0%
!! TTGTTAAATGTGCTGGTTCC+AGG - chr7_4:52883433-52883452 Msa1162270:intron 40.0%
! GCTCTTTCCCTTTTACTTGA+TGG - chr7_4:52883697-52883716 Msa1162270:CDS 40.0%
!! TTTCCCTTTTACTTGATGGC+AGG - chr7_4:52883701-52883720 Msa1162270:CDS 40.0%
CAAACCTGCCATCAAGTAAA+AGG + chr7_4:52883708-52883727 None:intergenic 40.0%
GACAAAACAGGTGCCAATAA+AGG + chr7_4:52883748-52883767 None:intergenic 40.0%
! CCCTTACGTAAGCCTTATAA+AGG - chr7_4:52883787-52883806 Msa1162270:intron 40.0%
TCATATACTGAGGAACAAGG+TGG + chr7_4:52884109-52884128 None:intergenic 40.0%
! TGATTAGCGGATCTACTGAT+GGG - chr7_4:52884305-52884324 Msa1162270:CDS 40.0%
!!! CTGATGGGAGTGTTACATTT+TGG - chr7_4:52884320-52884339 Msa1162270:CDS 40.0%
GGGTTATCAAAGGAAAGACA+AGG - chr7_4:52884481-52884500 Msa1162270:CDS 40.0%
ATCAGCCTTAGTTTCCAACA+CGG + chr7_4:52884641-52884660 None:intergenic 40.0%
!!! CGGCTTTTATCTCTGAAACA+TGG + chr7_4:52884741-52884760 None:intergenic 40.0%
!! GGAACTATCATTAGTTTGCC+CGG + chr7_4:52884761-52884780 None:intergenic 40.0%
TCAGTCAATTCATCATCTCG+TGG - chr7_4:52884813-52884832 Msa1162270:intron 40.0%
TGACCAAATGTGCTACATCT+GGG + chr7_4:52884885-52884904 None:intergenic 40.0%
CACTGAACCTGAATACTTGA+AGG - chr7_4:52884903-52884922 Msa1162270:intron 40.0%
! TTGGTGTCCTTCAAGTATTC+AGG + chr7_4:52884913-52884932 None:intergenic 40.0%
TCAATAATGAACAGTCGGCA+AGG - chr7_4:52885062-52885081 Msa1162270:intron 40.0%
TGTCTGACACAATGCTTTGT+TGG - chr7_4:52885101-52885120 Msa1162270:intron 40.0%
TTTCAACTGGACTTGATCAG+CGG - chr7_4:52885405-52885424 Msa1162270:intron 40.0%
!! TGATAATGGTTCCTGCGTAA+GGG + chr7_4:52885604-52885623 None:intergenic 40.0%
CAGCAACAGCAATCTGATAA+TGG + chr7_4:52885618-52885637 None:intergenic 40.0%
! CATTATCAGATTGCTGTTGC+TGG - chr7_4:52885616-52885635 Msa1162270:CDS 40.0%
!! ATGCAAATAGTGGACTTCTC+AGG - chr7_4:52885646-52885665 Msa1162270:CDS 40.0%
! TCCATGCCTCTGAAAATTGT+TGG - chr7_4:52885841-52885860 Msa1162270:CDS 40.0%
! CCATGCCTCTGAAAATTGTT+GGG - chr7_4:52885842-52885861 Msa1162270:CDS 40.0%
TCATCAAGAAGCTATGCAGC+AGG - chr7_4:52881380-52881399 Msa1162270:three_prime_UTR 45.0%
TGAAAATTCCATGTGGTGGC+TGG - chr7_4:52881561-52881580 Msa1162270:exon 45.0%
TCCGGTCTATCCCCATTATT+AGG + chr7_4:52881891-52881910 None:intergenic 45.0%
TAATGGGGATAGACCGGATA+CGG - chr7_4:52881893-52881912 Msa1162270:intron 45.0%
! AGGATTTGGCTCCTCTATAG+TGG - chr7_4:52881925-52881944 Msa1162270:intron 45.0%
! GGATTTGGCTCCTCTATAGT+GGG - chr7_4:52881926-52881945 Msa1162270:intron 45.0%
! GATTTGGCTCCTCTATAGTG+GGG - chr7_4:52881927-52881946 Msa1162270:intron 45.0%
TCCCCATGGATATGTATGGA+TGG + chr7_4:52882287-52882306 None:intergenic 45.0%
CAGATCCCCATGGATATGTA+TGG + chr7_4:52882291-52882310 None:intergenic 45.0%
CACCCACAAGAAAATAGGAC+TGG + chr7_4:52882500-52882519 None:intergenic 45.0%
! CAGTCCTATTTTCTTGTGGG+TGG - chr7_4:52882498-52882517 Msa1162270:CDS 45.0%
AGGAATGTATCTCTCTCCCA+TGG + chr7_4:52882670-52882689 None:intergenic 45.0%
TTGCAACTGGATGTGAAGAC+GGG - chr7_4:52882762-52882781 Msa1162270:CDS 45.0%
CTACACGCAGCAGAGAATAA+TGG + chr7_4:52882811-52882830 None:intergenic 45.0%
ATGTTGGAGGATCAGCTGTA+AGG - chr7_4:52882935-52882954 Msa1162270:CDS 45.0%
! GGTACATTGGTTGTAGCTGA+TGG + chr7_4:52882994-52883013 None:intergenic 45.0%
GCTACAACCAATGTACCTGA+TGG - chr7_4:52882997-52883016 Msa1162270:intron 45.0%
CGAACTTAATGCTGCTGATG+AGG - chr7_4:52883026-52883045 Msa1162270:intron 45.0%
CGTCATTGAAGAAGACATGC+TGG + chr7_4:52883199-52883218 None:intergenic 45.0%
CTTCTTCAATGACGTTCCAG+TGG - chr7_4:52883205-52883224 Msa1162270:intron 45.0%
!! GCTGGATCACTGATTTCTGA+AGG - chr7_4:52883342-52883361 Msa1162270:intron 45.0%
!! GGATCACTGATTTCTGAAGG+GGG - chr7_4:52883345-52883364 Msa1162270:intron 45.0%
!! GATCACTGATTTCTGAAGGG+GGG - chr7_4:52883346-52883365 Msa1162270:intron 45.0%
GATGCCTAACATTTGCGTCT+TGG - chr7_4:52883464-52883483 Msa1162270:CDS 45.0%
GGAACCAAGACGCAAATGTT+AGG + chr7_4:52883471-52883490 None:intergenic 45.0%
! GTGATTAGCGGATCTACTGA+TGG - chr7_4:52884304-52884323 Msa1162270:CDS 45.0%
TGGAGGAGATCTTTAAGCAG+TGG - chr7_4:52884460-52884479 Msa1162270:intron 45.0%
GGAGGAGATCTTTAAGCAGT+GGG - chr7_4:52884461-52884480 Msa1162270:intron 45.0%
GGAAAGACAAGGCAACAATC+AGG - chr7_4:52884492-52884511 Msa1162270:CDS 45.0%
!!! GATGCTTTCGGCCTTGTTTT+TGG + chr7_4:52884530-52884549 None:intergenic 45.0%
TCAGCCTTAGTTTCCAACAC+GGG + chr7_4:52884640-52884659 None:intergenic 45.0%
TAAGGCTGATGATTCCTCAG+CGG - chr7_4:52884651-52884670 Msa1162270:CDS 45.0%
ACTAACTATGCTGTACACGC+AGG + chr7_4:52884782-52884801 None:intergenic 45.0%
TGCGTGTACAGCATAGTTAG+TGG - chr7_4:52884781-52884800 Msa1162270:intron 45.0%
GCGTGTACAGCATAGTTAGT+GGG - chr7_4:52884782-52884801 Msa1162270:intron 45.0%
CGTGTACAGCATAGTTAGTG+GGG - chr7_4:52884783-52884802 Msa1162270:intron 45.0%
GTGTACAGCATAGTTAGTGG+GGG - chr7_4:52884784-52884803 Msa1162270:intron 45.0%
AACCCCAGATGTAGCACATT+TGG - chr7_4:52884879-52884898 Msa1162270:intron 45.0%
GACCAAATGTGCTACATCTG+GGG + chr7_4:52884884-52884903 None:intergenic 45.0%
GTGACCAAATGTGCTACATC+TGG + chr7_4:52884886-52884905 None:intergenic 45.0%
ACCTTTCACAGAAGAGCTGT+GGG + chr7_4:52884998-52885017 None:intergenic 45.0%
TACCTTTCACAGAAGAGCTG+TGG + chr7_4:52884999-52885018 None:intergenic 45.0%
! GGATCTTGGGTGTTTTCAAC+TGG - chr7_4:52885392-52885411 Msa1162270:intron 45.0%
TTCAACTGGACTTGATCAGC+GGG - chr7_4:52885406-52885425 Msa1162270:intron 45.0%
ATAGGAGTGAATGACTGGGT+TGG - chr7_4:52885538-52885557 Msa1162270:intron 45.0%
TAGGAGTGAATGACTGGGTT+GGG - chr7_4:52885539-52885558 Msa1162270:intron 45.0%
!! CTGATAATGGTTCCTGCGTA+AGG + chr7_4:52885605-52885624 None:intergenic 45.0%
! AGATTGCTGTTGCTGGAAGA+GGG - chr7_4:52885623-52885642 Msa1162270:CDS 45.0%
TGGAAGAGGGATGCAAATAG+TGG - chr7_4:52885636-52885655 Msa1162270:CDS 45.0%
! CCCAACAATTTTCAGAGGCA+TGG + chr7_4:52885845-52885864 None:intergenic 45.0%
AAATTCCATGTGGTGGCTGG+CGG - chr7_4:52881564-52881583 Msa1162270:exon 50.0%
ACGGGACTGTGAGATTGACT+TGG - chr7_4:52882780-52882799 Msa1162270:CDS 50.0%
! TTGCTTGGTGAGCATGTTGG+AGG - chr7_4:52882922-52882941 Msa1162270:CDS 50.0%
CAACCAATGTACCTGATGGG+AGG - chr7_4:52883001-52883020 Msa1162270:intron 50.0%
TTAAGTTCGCTCCTCCCATC+AGG + chr7_4:52883015-52883034 None:intergenic 50.0%
TGAAGGGGGGACAATGAACT+TGG - chr7_4:52883359-52883378 Msa1162270:intron 50.0%
!! ATGTGCTGGTTCCAGGTTAG+AGG - chr7_4:52883440-52883459 Msa1162270:intron 50.0%
GTTAGGCATCTCCTCTAACC+TGG + chr7_4:52883454-52883473 None:intergenic 50.0%
AAGCTTCCACACTGTCAGTC+AGG + chr7_4:52884348-52884367 None:intergenic 50.0%
TGTCAAAAACGACCACGCAC+AGG - chr7_4:52884412-52884431 Msa1162270:intron 50.0%
GTCAAAAACGACCACGCACA+GGG - chr7_4:52884413-52884432 Msa1162270:intron 50.0%
ATCCCCCGTGTTGGAAACTA+AGG - chr7_4:52884633-52884652 Msa1162270:CDS 50.0%
AGCCTTAGTTTCCAACACGG+GGG + chr7_4:52884638-52884657 None:intergenic 50.0%
CAGCCTTAGTTTCCAACACG+GGG + chr7_4:52884639-52884658 None:intergenic 50.0%
GGAGACAGTTGACACCAGAT+TGG + chr7_4:52884720-52884739 None:intergenic 50.0%
!! TATGAAGGTGTCTGGACGGA+TGG - chr7_4:52885371-52885390 Msa1162270:intron 50.0%
TGTCTGGACGGATGGATCTT+GGG - chr7_4:52885379-52885398 Msa1162270:intron 50.0%
TCTGGTGAAGATGCCAGCAT+CGG + chr7_4:52885433-52885452 None:intergenic 50.0%
! AGCCTGAAGCGTTATCTGCT+AGG - chr7_4:52885495-52885514 Msa1162270:intron 50.0%
! GCCTGAAGCGTTATCTGCTA+GGG - chr7_4:52885496-52885515 Msa1162270:intron 50.0%
TATCTGCTAGGGCATGTAGC+AGG - chr7_4:52885507-52885526 Msa1162270:intron 50.0%
! CAGATTGCTGTTGCTGGAAG+AGG - chr7_4:52885622-52885641 Msa1162270:CDS 50.0%
ACGTGCGTCCACCAAAAGCT+AGG + chr7_4:52882132-52882151 None:intergenic 55.0%
GCTCCTCCCATCAGGTACAT+TGG + chr7_4:52883007-52883026 None:intergenic 55.0%
GCATGTCAGTGGAAAGCCAC+TGG + chr7_4:52883224-52883243 None:intergenic 55.0%
GGTGGAGACAGGCACTAAAG+AGG + chr7_4:52884091-52884110 None:intergenic 55.0%
CTGAGGAACAAGGTGGAGAC+AGG + chr7_4:52884102-52884121 None:intergenic 55.0%
TTGGGACCTGACTGACAGTG+TGG - chr7_4:52884339-52884358 Msa1162270:CDS 55.0%
GAGGAAGTCAGGGTGGTAGA+CGG - chr7_4:52884437-52884456 Msa1162270:intron 55.0%
ACATACAGCATCCCCCGTGT+TGG - chr7_4:52884624-52884643 Msa1162270:CDS 55.0%
GCCCACAGCTCTTCTGTGAA+AGG - chr7_4:52884994-52885013 Msa1162270:intron 55.0%
AACAGTCGGCAAGGCATGAC+AGG - chr7_4:52885071-52885090 Msa1162270:intron 55.0%
GTGTCTGGACGGATGGATCT+TGG - chr7_4:52885378-52885397 Msa1162270:intron 55.0%
GCAGATAACGCTTCAGGCTC+TGG + chr7_4:52885494-52885513 None:intergenic 55.0%
GCCCTAGCAGATAACGCTTC+AGG + chr7_4:52885500-52885519 None:intergenic 55.0%
CCTCGCATCATTCATCGTGC+TGG + chr7_4:52885675-52885694 None:intergenic 55.0%
CCAGCACGATGAATGATGCG+AGG - chr7_4:52885672-52885691 Msa1162270:CDS 55.0%
AAACGACCACGCACAGGGAG+AGG - chr7_4:52884418-52884437 Msa1162270:intron 60.0%
TGACTTCCTCTCCCTGTGCG+TGG + chr7_4:52884427-52884446 None:intergenic 60.0%
ACGCACAGGGAGAGGAAGTC+AGG - chr7_4:52884426-52884445 Msa1162270:intron 60.0%
CGCACAGGGAGAGGAAGTCA+GGG - chr7_4:52884427-52884446 Msa1162270:intron 60.0%
ACAGGGAGAGGAAGTCAGGG+TGG - chr7_4:52884430-52884449 Msa1162270:intron 60.0%
GAAGTCAGGGTGGTAGACGG+TGG - chr7_4:52884440-52884459 Msa1162270:intron 60.0%
CACGGGGGATGCTGTATGTC+TGG + chr7_4:52884623-52884642 None:intergenic 60.0%
ACAGAAGAGCTGTGGGCCGA+AGG + chr7_4:52884991-52885010 None:intergenic 60.0%
TTGATCAGCGGGTCCGATGC+TGG - chr7_4:52885417-52885436 Msa1162270:intron 60.0%
! CACTTGCTGGTCCCTTACGC+AGG - chr7_4:52885590-52885609 Msa1162270:intron 60.0%
GGACGCACGTCTATCTGCCG+TGG - chr7_4:52882142-52882161 Msa1162270:intron 65.0%
GTCAGGGTGGTAGACGGTGG+AGG - chr7_4:52884443-52884462 Msa1162270:intron 65.0%
GGACGCCGCCAGCCACCACA+TGG + chr7_4:52881572-52881591 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 52881332 52885932 52881332 ID=Msa1162270;Name=Msa1162270
chr7_4 mRNA 52881332 52885932 52881332 ID=Msa1162270-mRNA-1;Parent=Msa1162270;Name=Msa1162270-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|1|0.88|1|1|1|9|245|710
chr7_4 exon 52881332 52881652 52881332 ID=Msa1162270-mRNA-1:exon:15254;Parent=Msa1162270-mRNA-1
chr7_4 exon 52881736 52881886 52881736 ID=Msa1162270-mRNA-1:exon:15253;Parent=Msa1162270-mRNA-1
chr7_4 exon 52882249 52882989 52882249 ID=Msa1162270-mRNA-1:exon:15252;Parent=Msa1162270-mRNA-1
chr7_4 exon 52883456 52883541 52883456 ID=Msa1162270-mRNA-1:exon:15251;Parent=Msa1162270-mRNA-1
chr7_4 exon 52883643 52883723 52883643 ID=Msa1162270-mRNA-1:exon:15250;Parent=Msa1162270-mRNA-1
chr7_4 exon 52883810 52884379 52883810 ID=Msa1162270-mRNA-1:exon:15249;Parent=Msa1162270-mRNA-1
chr7_4 exon 52884463 52884677 52884463 ID=Msa1162270-mRNA-1:exon:15248;Parent=Msa1162270-mRNA-1
chr7_4 exon 52885615 52885707 52885615 ID=Msa1162270-mRNA-1:exon:15247;Parent=Msa1162270-mRNA-1
chr7_4 exon 52885813 52885932 52885813 ID=Msa1162270-mRNA-1:exon:15246;Parent=Msa1162270-mRNA-1
chr7_4 CDS 52885813 52885932 52885813 ID=Msa1162270-mRNA-1:cds;Parent=Msa1162270-mRNA-1
chr7_4 CDS 52885615 52885707 52885615 ID=Msa1162270-mRNA-1:cds;Parent=Msa1162270-mRNA-1
chr7_4 CDS 52884463 52884677 52884463 ID=Msa1162270-mRNA-1:cds;Parent=Msa1162270-mRNA-1
chr7_4 CDS 52883810 52884379 52883810 ID=Msa1162270-mRNA-1:cds;Parent=Msa1162270-mRNA-1
chr7_4 CDS 52883643 52883723 52883643 ID=Msa1162270-mRNA-1:cds;Parent=Msa1162270-mRNA-1
chr7_4 CDS 52883456 52883541 52883456 ID=Msa1162270-mRNA-1:cds;Parent=Msa1162270-mRNA-1
chr7_4 CDS 52882249 52882989 52882249 ID=Msa1162270-mRNA-1:cds;Parent=Msa1162270-mRNA-1
chr7_4 CDS 52881736 52881886 52881736 ID=Msa1162270-mRNA-1:cds;Parent=Msa1162270-mRNA-1
chr7_4 CDS 52881577 52881652 52881577 ID=Msa1162270-mRNA-1:cds;Parent=Msa1162270-mRNA-1
chr7_4 three_prime_UTR 52881332 52881576 52881332 ID=Msa1162270-mRNA-1:three_prime_utr;Parent=Msa1162270-mRNA-1
Gene Sequence

>Msa1162270

TTGTCTTCGATTGAGCATGTTTCTGTTGATAACAACTCGGAAGATACATCATCAAGAAGCTATGCAGCAGGTTTTGCATCTGTAGATTTCATAGTATGGAATTTAGTCAATGAGAATAAGTTGGTGAAAATTCCATGTGGTGGCTGGCGGCGTCCTCATTCCTATTTTCTAGGTGATGTACCAGAGATGAAGAACTGTTTTGCTTTTGTTAAGGATGAAATAATATATATACATAGACACTGGATTAATGATATCGTTGGGAAGATATACCCTCTAAGTTTGCATATGCAATTCCATGGGAGAGAGATACATTCCTTGTGCTTTATACACGAAGATATGCTTCTAGGAGATTATTGTAAACGTCCATCATTTTCTAAATCAAGTTGGATTGCAACTGGATGTGAAGACGGGACTGTGAGATTGACTTGGTACTCTCCAGGTATTGAGAATTGGTCCATGTCAAAATTGCTTGGTGAGCATGTTGGAGGATCAGCTGTAAGGTCAATTTGTTGTGTTTCGAAACTACACATCATTCCATCAGCTACAACCAATGTACCTGATGGGAGGAGCGAACTTAATGCTGCTGATGAGGACAAAGATAATCCAACTTTACTGATATCAGTGGGTGCAAAGCGTGTCTTAACTTCTTGGCTACTTAAAAGCAGGAAACTGGATAACAAAACTAACTTCCGAACTGATAATCAGCATGATGCAAAGGAACTTGATGATCAATTTTTGTCCAGCATGTCTTCTTCAATGACGTTCCAGTGGCTTTCCACTGACATGCCAACCAAATATTCAAGTACACACAGATATACAGAAAATAATGTGGGGAAAGCAGTTGATGTTGCTGAAAATGGTTCTAAAATAAAAATTGATGCTGAGGCTGGATCACTGATTTCTGAAGGGGGGACAATGAACTTGGTCAGAGATAAACATGAGGATGACTGGAGATATCTTGCAGTCACTGCTTTTCTTGTTAAATGTGCTGGTTCCAGGATATCTGTCTGTTTTGTTGTCGTTGCTTGTTCAGATGCTACAGTTATGTTACGGGCTTTAATTTTACCCTTTCGCTTATGGTTTGACGTTGCATTACTTGTTCCTTTATTGGCACCTGTTTTGTCATTGCAGCATATCATCTTTCCCTTACGTAAGCCTTATAAAGATAACATCAAAGTTGGAAATGTTTACATTGTGATTAGCGGATCTACTGATGGGAGTGTTACATTTTGGGACCTGACTGACAGTGTGGAAGCTTTTATGCAGAGCGTTTCAGTTTGTGATGTAGAGAAGCTTTTTGATTGTCAAAAACGACCACGCACAGGGAGAGGAAGTCAGGGTGGTAGACGGTGGAGGAGATCTTTAAGCAGTGGGTTATCAAAGGAAAGACAAGGCAACAATCAGGTGACTTCAAAAGCCAAAAACAAGGCCGAAAGCATCAATTCTACTACACATGGGACCTCTTCAGTGCCAAATAAATCTGAAGACAACAATATGGTTTGTTCTCAAACCAGACATACAGCATCCCCCGTGTTGGAAACTAAGGCTGATGATTCCTCAGCGGAAATATGTGAAATACAACCTCTACACCTTTTGAAAAATGTTCACCAATCTGGTGTCAACTGTCTCCATGTTTCAGAGATAAAAGCCGGGCAAACTAATGATAGTTCCTGCGTGTACAGCATAGTTAGTGGGGGAGATGATCAGTCAATTCATCATCTCGTGGTTGAGTTATCAACTAAAACAATAAATATCGATTATGGGGTTTTAACCCCAGATGTAGCACATTTGGTCACTGAACCTGAATACTTGAAGGACACCAATTTTCAAAATCATAGCAGAAACTACGAGATCAGATTCTTAAATTCTGAGAAATTTCCTTCGGCCCACAGCTCTTCTGTGAAAGGTGTCTGGACGGATGGATCTTGGGTGTTTTCAACTGGACTTGATCAGCGGGTCCGATGCTGGCATCTTCACCAGAGTAAACTAATAGAACGTGCACACTTAATAGTTAGTGTGCCAGAGCCTGAAGCGTTATCTGCTAGGGCATGTAGCAGGAACCATTATCAGATTGCTGTTGCTGGAAGAGGGATGCAAATAGTGGACTTCTCAGGATGCCAGCACGATGAATGA

Protein sequence

>Msa1162270

LSSIEHVSVDNNSEDTSSRSYAAGFASVDFIVWNLVNENKLVKIPCGGWRRPHSYFLGDVPEMKNCFAFVKDEIIYIHRHWINDIVGKIYPLSLHMQFHGREIHSLCFIHEDMLLGDYCKRPSFSKSSWIATGCEDGTVRLTWYSPGIENWSMSKLLGEHVGGSAVRSICCVSKLHIIPSATTNVPDGRSELNAADEDKDNPTLLISVGAKRVLTSWLLKSRKLDNKTNFRTDNQHDAKELDDQFLSSMSSSMTFQWLSTDMPTKYSSTHRYTENNVGKAVDVAENGSKIKIDAEAGSLISEGGTMNLVRDKHEDDWRYLAVTAFLVKCAGSRISVCFVVVACSDATVMLRALILPFRLWFDVALLVPLLAPVLSLQHIIFPLRKPYKDNIKVGNVYIVISGSTDGSVTFWDLTDSVEAFMQSVSVCDVEKLFDCQKRPRTGRGSQGGRRWRRSLSSGLSKERQGNNQVTSKAKNKAESINSTTHGTSSVPNKSEDNNMVCSQTRHTASPVLETKADDSSAEICEIQPLHLLKNVHQSGVNCLHVSEIKAGQTNDSSCVYSIVSGGDDQSIHHLVVELSTKTINIDYGVLTPDVAHLVTEPEYLKDTNFQNHSRNYEIRFLNSEKFPSAHSSSVKGVWTDGSWVFSTGLDQRVRCWHLHQSKLIERAHLIVSVPEPEALSARACSRNHYQIAVAGRGMQIVDFSGCQHDE*