Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0563640 | GAU20427.1 | 44.944 | 89 | 44 | 1 | 1 | 84 | 289 | 377 | 1.82e-12 | 79.3 |
| Msa0563640 | GAU20427.1 | 51.598 | 219 | 78 | 6 | 108 | 306 | 92 | 302 | 3.42e-59 | 205 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0563640 | sp|Q9FZK1|FBX6_ARATH | 46.377 | 207 | 103 | 5 | 106 | 304 | 163 | 369 | 1.08e-45 | 164 |
| Msa0563640 | sp|Q9FZK1|FBX6_ARATH | 51.087 | 92 | 33 | 4 | 1 | 80 | 358 | 449 | 1.74e-14 | 77.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0563640 | A0A2Z6LQM1 | 44.944 | 89 | 44 | 1 | 1 | 84 | 289 | 377 | 8.69e-13 | 79.3 |
| Msa0563640 | A0A2Z6LQM1 | 51.598 | 219 | 78 | 6 | 108 | 306 | 92 | 302 | 1.63e-59 | 205 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0013050 | Msa0563640 | 0.808815 | 2.572333e-50 | -8.615850e-47 |
| Msa0032610 | Msa0563640 | -0.812275 | 4.602543e-51 | -8.615850e-47 |
| Msa0172780 | Msa0563640 | -0.816570 | 5.165914e-52 | -8.615850e-47 |
| Msa0467900 | Msa0563640 | 0.802846 | 4.622538e-49 | -8.615850e-47 |
| Msa0468130 | Msa0563640 | -0.802872 | 4.565284e-49 | -8.615850e-47 |
| Msa0553220 | Msa0563640 | 0.816773 | 4.652909e-52 | -8.615850e-47 |
| Msa0563640 | Msa0784860 | -0.811660 | 6.263420e-51 | -8.615850e-47 |
| Msa0563640 | Msa0935850 | -0.807817 | 4.200201e-50 | -8.615850e-47 |
| Msa0563640 | Msa0982270 | -0.801170 | 1.021554e-48 | -8.615850e-47 |
| Msa0563640 | Msa1217430 | 0.812367 | 4.393369e-51 | -8.615850e-47 |
| Msa0563640 | Msa1302100 | -0.806183 | 9.309084e-50 | -8.615850e-47 |
| Msa0563640 | Msa1302190 | 0.801158 | 1.027457e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0563640 | MtrunA17_Chr1g0161891 | 55.172 | 203 | 82 | 6 | 106 | 306 | 64 | 259 | 1.05e-59 | 194 |
| Msa0563640 | MtrunA17_Chr1g0161891 | 46.067 | 89 | 43 | 1 | 1 | 84 | 246 | 334 | 2.42e-15 | 75.9 |
| Msa0563640 | MtrunA17_Chr1g0161871 | 45.703 | 256 | 109 | 6 | 70 | 298 | 29 | 281 | 1.76e-57 | 189 |
| Msa0563640 | MtrunA17_Chr3g0122401 | 48.858 | 219 | 101 | 6 | 94 | 304 | 153 | 368 | 8.57e-55 | 185 |
| Msa0563640 | MtrunA17_Chr3g0122401 | 52.747 | 91 | 32 | 3 | 1 | 80 | 357 | 447 | 4.76e-18 | 84.3 |
| Msa0563640 | MtrunA17_Chr8g0377451 | 60.976 | 82 | 23 | 3 | 1 | 76 | 1 | 79 | 8.34e-22 | 87.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0563640 | AT1G27340.1 | 46.377 | 207 | 103 | 5 | 106 | 304 | 163 | 369 | 1.10e-46 | 164 |
| Msa0563640 | AT1G27340.1 | 51.087 | 92 | 33 | 4 | 1 | 80 | 358 | 449 | 1.77e-15 | 77.0 |
Find 58 sgRNAs with CRISPR-Local
Find 332 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAGGTAAAACAGGCCTTTC+CGG | 0.312937 | 4_1:-64082233 | None:intergenic |
| GCGAGTTAAGCTTACTTGTT+TGG | 0.320204 | 4_1:+64077314 | Msa0563640:CDS |
| TGTGTGCATATGTGAGCTTC+TGG | 0.374180 | 4_1:+64077233 | Msa0563640:CDS |
| CTTTCCTGCGACACGTCAAC+TGG | 0.390376 | 4_1:+64082587 | Msa0563640:CDS |
| GCTACATATATGTATGCATA+TGG | 0.397861 | 4_1:+64082716 | Msa0563640:CDS |
| GCGACACGTCAACTGGCATT+TGG | 0.403260 | 4_1:+64082594 | Msa0563640:CDS |
| CTGAAGGTTCCTGCGCCAAT+TGG | 0.413799 | 4_1:+64077420 | Msa0563640:CDS |
| GTCCTACGATTGGGTATTGA+TGG | 0.415089 | 4_1:+64082413 | Msa0563640:CDS |
| GACTGGATCAATCGCGAGCT+GGG | 0.420793 | 4_1:+64082349 | Msa0563640:CDS |
| TCGCAGGAAAGAATCCCTTC+TGG | 0.422366 | 4_1:-64082575 | None:intergenic |
| AGTGTTGTGCCTATGGCAAC+AGG | 0.423660 | 4_1:-64082533 | None:intergenic |
| GTAGAAGAAACAGGTAAAAC+AGG | 0.424046 | 4_1:-64082242 | None:intergenic |
| TGACTGGATCAATCGCGAGC+TGG | 0.427884 | 4_1:+64082348 | Msa0563640:CDS |
| ACAACATAACAACTAGGAAA+TGG | 0.437476 | 4_1:+64077397 | Msa0563640:CDS |
| ATCTTGAAGGATCGAGTTAG+TGG | 0.437656 | 4_1:-64082320 | None:intergenic |
| GGCATAATGGAGCTTTGAGT+TGG | 0.445961 | 4_1:-64078952 | None:intergenic |
| CGAGTGGAGGCATGGCATAA+TGG | 0.448620 | 4_1:-64078965 | None:intergenic |
| TTACTTGTTTGGTAAACAAA+GGG | 0.473724 | 4_1:+64077325 | Msa0563640:CDS |
| TCCAGTCAGCAAAATCTTGA+AGG | 0.478079 | 4_1:-64082333 | None:intergenic |
| CTTACTTGTTTGGTAAACAA+AGG | 0.485890 | 4_1:+64077324 | Msa0563640:CDS |
| GATGTAAAGTGTTGTGCCTA+TGG | 0.489281 | 4_1:-64082540 | None:intergenic |
| TGTGCCTATGGCAACAGGTT+TGG | 0.492137 | 4_1:-64082528 | None:intergenic |
| GAATACTTCTTACATAACAT+TGG | 0.499292 | 4_1:+64082643 | Msa0563640:CDS |
| AATGGACGAATAATGTTTGT+GGG | 0.502167 | 4_1:+64077183 | None:intergenic |
| TAATGGACGAATAATGTTTG+TGG | 0.508255 | 4_1:+64077182 | None:intergenic |
| GGTTACAAGGTCCTACGATT+GGG | 0.508563 | 4_1:+64082404 | Msa0563640:CDS |
| ATGACTCAGTAACAAAGTAC+TGG | 0.509228 | 4_1:+64082450 | Msa0563640:CDS |
| ATAACATTGGTTGAGTCTGA+TGG | 0.511612 | 4_1:+64082656 | Msa0563640:CDS |
| CCAAAAGTTGTGTAAAACCA+TGG | 0.511798 | 4_1:-64082140 | None:intergenic |
| GAATGGAGGTGCAGGTTACA+AGG | 0.514677 | 4_1:+64082391 | Msa0563640:CDS |
| TAAGAAGTATTCAGTGGCGC+TGG | 0.520452 | 4_1:-64082632 | None:intergenic |
| TAGGCACAACACTTTACATC+AGG | 0.521253 | 4_1:+64082543 | Msa0563640:CDS |
| TACCTGCATGTATTTGTCCT+AGG | 0.523391 | 4_1:-64082475 | None:intergenic |
| ATGACAATGAATGGAGGTGC+AGG | 0.539403 | 4_1:+64082383 | Msa0563640:CDS |
| TTTACCTGTTTCTTCTACAG+GGG | 0.539472 | 4_1:+64082247 | Msa0563640:CDS |
| AATGCCAGTTGACGTGTCGC+AGG | 0.540881 | 4_1:-64082591 | None:intergenic |
| TAATGTTTGTGGGTCTGCTA+AGG | 0.542902 | 4_1:+64077193 | None:intergenic |
| TCCGGTGTTTGTGTTACAGA+AGG | 0.548071 | 4_1:-64082215 | None:intergenic |
| GTAACAAAGTACTGGAGCCT+AGG | 0.555821 | 4_1:+64082458 | Msa0563640:CDS |
| TTACTTACAACATAACAACT+AGG | 0.566319 | 4_1:+64077391 | Msa0563640:CDS |
| AGGTTACAAGGTCCTACGAT+TGG | 0.566372 | 4_1:+64082403 | Msa0563640:CDS |
| CTACATATATGTATGCATAT+GGG | 0.566897 | 4_1:+64082717 | Msa0563640:CDS |
| TGATGGACAAATCATGTATG+TGG | 0.570882 | 4_1:+64082673 | Msa0563640:CDS |
| GACAGCAACGAGTGGAGGCA+TGG | 0.571659 | 4_1:-64078973 | None:intergenic |
| TCAAGTCGCAAGTAAATCCA+TGG | 0.572022 | 4_1:+64082123 | Msa0563640:intron |
| TTACCTGTTTCTTCTACAGG+GGG | 0.574187 | 4_1:+64082248 | Msa0563640:CDS |
| ATCAGGCATATGTATCCAGA+AGG | 0.583995 | 4_1:+64082560 | Msa0563640:CDS |
| TCCTTCTGTAACACAAACAC+CGG | 0.597425 | 4_1:+64082214 | Msa0563640:CDS |
| TTTCATAAAAGGGTCGTAGA+CGG | 0.602669 | 4_1:-64082180 | None:intergenic |
| AGCCTAGGACAAATACATGC+AGG | 0.603357 | 4_1:+64082473 | Msa0563640:CDS |
| ATCAGGACAGCAACGAGTGG+AGG | 0.608196 | 4_1:-64078978 | None:intergenic |
| CTGTAACACAAACACCGGAA+AGG | 0.610414 | 4_1:+64082219 | Msa0563640:CDS |
| AACAACTAGGAAATGGCTGA+AGG | 0.619799 | 4_1:+64077404 | Msa0563640:CDS |
| TCGGGGATGACAATGAATGG+AGG | 0.648561 | 4_1:+64082377 | Msa0563640:CDS |
| CACCATCAATACCCAATCGT+AGG | 0.657911 | 4_1:-64082415 | None:intergenic |
| GATGGACAAATCATGTATGT+GGG | 0.660437 | 4_1:+64082674 | Msa0563640:CDS |
| TCAGGCATATGTATCCAGAA+GGG | 0.661177 | 4_1:+64082561 | Msa0563640:CDS |
| GTTATGTAAGAAGTATTCAG+TGG | 0.674561 | 4_1:-64082638 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTATTAATTATTTTATATA+TGG | + | chr4_1:64079682-64079701 | Msa0563640:intron | 0.0% |
| !!! | AATGATAATATCATTTTTTT+AGG | + | chr4_1:64077606-64077625 | Msa0563640:intron | 10.0% |
| !!! | TTTACAAAACTATTTTTATT+TGG | + | chr4_1:64077902-64077921 | Msa0563640:intron | 10.0% |
| !! | TAATTAATAATAAACTCTAA+TGG | - | chr4_1:64078345-64078364 | None:intergenic | 10.0% |
| !! | GAAAATAAAAATATTTGTTT+AGG | - | chr4_1:64080487-64080506 | None:intergenic | 10.0% |
| !!! | ACAAATATTTTTATTTTCTT+AGG | + | chr4_1:64080489-64080508 | Msa0563640:intron | 10.0% |
| !! | AAAAAAACAAAATATAGTAT+TGG | - | chr4_1:64081197-64081216 | None:intergenic | 10.0% |
| !!! | TTAATTTTTTTTAGAATAGA+AGG | + | chr4_1:64081255-64081274 | Msa0563640:intron | 10.0% |
| !!! | TAATTTTTTTTAGAATAGAA+GGG | + | chr4_1:64081256-64081275 | Msa0563640:intron | 10.0% |
| !!! | ATTTTTTTAGGTTTCTATTT+TGG | + | chr4_1:64077618-64077637 | Msa0563640:intron | 15.0% |
| !!! | TGTTTTCTATTATTTATACA+TGG | + | chr4_1:64078521-64078540 | Msa0563640:intron | 15.0% |
| !! | ATTATAAGTGTATAAAACTA+GGG | - | chr4_1:64078614-64078633 | None:intergenic | 15.0% |
| !! | TATGTAAAATTAAACAAAAG+AGG | + | chr4_1:64078794-64078813 | Msa0563640:intron | 15.0% |
| !! | AAGAAGTGAAAAAAAAAAAT+TGG | - | chr4_1:64079423-64079442 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTTTTTTGTGTCT+GGG | + | chr4_1:64080242-64080261 | Msa0563640:intron | 15.0% |
| !!! | ATAAAAAGCAAATTGTTTTA+TGG | + | chr4_1:64080427-64080446 | Msa0563640:intron | 15.0% |
| !!! | ATTTATTTTTGAAACATACA+TGG | + | chr4_1:64080588-64080607 | Msa0563640:intron | 15.0% |
| !!! | ATTTATTTTTGAAACATACA+AGG | + | chr4_1:64080588-64080607 | Msa0563640:intron | 15.0% |
| !!! | TTGTAGTTAGTTTTTTTTTT+TGG | - | chr4_1:64080741-64080760 | None:intergenic | 15.0% |
| !! | TCTGTCAAAAAAAAAAAAAA+AGG | + | chr4_1:64080912-64080931 | Msa0563640:intron | 15.0% |
| !! | AAAAAAATCAAAAGGTAAAT+AGG | + | chr4_1:64080999-64081018 | Msa0563640:intron | 15.0% |
| !! | AAAAAATCAAAAGGTAAATA+GGG | + | chr4_1:64081000-64081019 | Msa0563640:intron | 15.0% |
| !! | TTGAAAGAAAATAAATAACA+AGG | - | chr4_1:64081321-64081340 | None:intergenic | 15.0% |
| !! | TCTAAATCAAATAAATAACA+AGG | - | chr4_1:64081358-64081377 | None:intergenic | 15.0% |
| !!! | AGCTATCTTTTATTATATTT+AGG | + | chr4_1:64081417-64081436 | Msa0563640:intron | 15.0% |
| !!! | TTTTATTATATTTAGGTCAA+GGG | + | chr4_1:64081424-64081443 | Msa0563640:intron | 15.0% |
| !! | AAATTAAAGAACTATTATCT+AGG | - | chr4_1:64081890-64081909 | None:intergenic | 15.0% |
| !! | TAGAATCATAATAGATTCAT+AGG | - | chr4_1:64077659-64077678 | None:intergenic | 20.0% |
| !!! | GATTTTAGTTATAGTTACAT+TGG | - | chr4_1:64077777-64077796 | None:intergenic | 20.0% |
| !! | CTATTATTTATACATGGATT+TGG | + | chr4_1:64078527-64078546 | Msa0563640:intron | 20.0% |
| !! | GATTATAAGTGTATAAAACT+AGG | - | chr4_1:64078615-64078634 | None:intergenic | 20.0% |
| !! | CTAGTTAAGAGAAATTTAAA+GGG | - | chr4_1:64078637-64078656 | None:intergenic | 20.0% |
| !! | TCTAGTTAAGAGAAATTTAA+AGG | - | chr4_1:64078638-64078657 | None:intergenic | 20.0% |
| !! | TATCAAGGATATTAATAATC+AGG | - | chr4_1:64079980-64079999 | None:intergenic | 20.0% |
| !!! | ATAACATGTTTGATTTATCA+AGG | - | chr4_1:64079995-64080014 | None:intergenic | 20.0% |
| !! | ACAAAAATAGAAATCATTAG+CGG | - | chr4_1:64080056-64080075 | None:intergenic | 20.0% |
| !!! | CTTTTTTTTTTTTTTGTGTC+TGG | + | chr4_1:64080241-64080260 | Msa0563640:intron | 20.0% |
| !!! | AGTTAGTTTTTTTTTTTGGA+GGG | - | chr4_1:64080737-64080756 | None:intergenic | 20.0% |
| !!! | TAGTTAGTTTTTTTTTTTGG+AGG | - | chr4_1:64080738-64080757 | None:intergenic | 20.0% |
| !! | AGTATTTGTATTTAAAGAGT+GGG | + | chr4_1:64080974-64080993 | Msa0563640:intron | 20.0% |
| !! | GAGTTACAATAGATTATTAT+AGG | - | chr4_1:64081229-64081248 | None:intergenic | 20.0% |
| !!! | ATTTATTTTTTGACAAACGA+AGG | + | chr4_1:64081288-64081307 | Msa0563640:intron | 20.0% |
| !!! | TTTATTTTTTGACAAACGAA+GGG | + | chr4_1:64081289-64081308 | Msa0563640:intron | 20.0% |
| !!! | CTTTTATTATATTTAGGTCA+AGG | + | chr4_1:64081423-64081442 | Msa0563640:intron | 20.0% |
| !! | ATGTTATGTTTGTATTTACT+CGG | + | chr4_1:64081478-64081497 | Msa0563640:intron | 20.0% |
| !!! | ATAGTTCTTTAATTTGACAT+TGG | + | chr4_1:64081895-64081914 | Msa0563640:intron | 20.0% |
| !! | AAAATGCTGAAAAAAACTTT+GGG | - | chr4_1:64082101-64082120 | None:intergenic | 20.0% |
| !!! | AACAAGTTTGTTATTGAAAG+AGG | + | chr4_1:64077257-64077276 | Msa0563640:intron | 25.0% |
| ! | TTACTTGTTTGGTAAACAAA+GGG | + | chr4_1:64077325-64077344 | Msa0563640:CDS | 25.0% |
| ! | TTACTTACAACATAACAACT+AGG | + | chr4_1:64077391-64077410 | Msa0563640:CDS | 25.0% |
| ! | GTTTATATATAAGCTAGCAA+TGG | + | chr4_1:64077517-64077536 | Msa0563640:intron | 25.0% |
| ! | ATAATAGATTCATAGGCTAA+GGG | - | chr4_1:64077652-64077671 | None:intergenic | 25.0% |
| ! | TTTAGTTATAGTTACATTGG+TGG | - | chr4_1:64077774-64077793 | None:intergenic | 25.0% |
| ! | CTCTCATTCAAACAATAAAT+TGG | + | chr4_1:64078090-64078109 | Msa0563640:intron | 25.0% |
| ! | ACACATCATAAAACTCTAAA+CGG | + | chr4_1:64078565-64078584 | Msa0563640:intron | 25.0% |
| !!! | CATGTTTTGATGAAGTTTTA+AGG | - | chr4_1:64078851-64078870 | None:intergenic | 25.0% |
| !! | TATACTTTTCTACATGTACT+TGG | - | chr4_1:64078893-64078912 | None:intergenic | 25.0% |
| !! | AGTATAGTCATATTTTCTAC+AGG | + | chr4_1:64078907-64078926 | Msa0563640:intron | 25.0% |
| !! | GTATAGTCATATTTTCTACA+GGG | + | chr4_1:64078908-64078927 | Msa0563640:intron | 25.0% |
| ! | TTCGTAAATCATATGTGATT+TGG | - | chr4_1:64079125-64079144 | None:intergenic | 25.0% |
| !! | AAATTTTATGTACCTCCTTA+TGG | - | chr4_1:64079329-64079348 | None:intergenic | 25.0% |
| !! | TACATAAAATTTAGCTCAAG+TGG | + | chr4_1:64079337-64079356 | Msa0563640:intron | 25.0% |
| ! | TATATTTCAATGTCAATACG+TGG | + | chr4_1:64079522-64079541 | Msa0563640:intron | 25.0% |
| ! | CTTTGTTCACTAAACAATTA+AGG | - | chr4_1:64079623-64079642 | None:intergenic | 25.0% |
| ! | AGTGAACAAAGTAAGTAATA+AGG | + | chr4_1:64079632-64079651 | Msa0563640:intron | 25.0% |
| ! | ATATATGGATTCAATATGAG+TGG | + | chr4_1:64079697-64079716 | Msa0563640:intron | 25.0% |
| ! | ATGGCCTATTAACAAAATAA+CGG | + | chr4_1:64079728-64079747 | Msa0563640:intron | 25.0% |
| !!! | TTTCCCGTTATTTTGTTAAT+AGG | - | chr4_1:64079735-64079754 | None:intergenic | 25.0% |
| ! | AGAAATAATTCCAACAAAAG+TGG | + | chr4_1:64080112-64080131 | Msa0563640:intron | 25.0% |
| !!! | ATTATGCATTGTCTGTTTTT+TGG | + | chr4_1:64080286-64080305 | Msa0563640:intron | 25.0% |
| !! | GTATCATTTCTTTTTCTTGA+GGG | - | chr4_1:64080680-64080699 | None:intergenic | 25.0% |
| !! | AGTATCATTTCTTTTTCTTG+AGG | - | chr4_1:64080681-64080700 | None:intergenic | 25.0% |
| ! | GAGTATTTGTATTTAAAGAG+TGG | + | chr4_1:64080973-64080992 | Msa0563640:intron | 25.0% |
| ! | AGTGGGAAAAAAAAATCAAA+AGG | + | chr4_1:64080991-64081010 | Msa0563640:intron | 25.0% |
| ! | GCATTGAAAAATAGTTATAG+AGG | - | chr4_1:64081105-64081124 | None:intergenic | 25.0% |
| !!! | TTATTTTTTGACAAACGAAG+GGG | + | chr4_1:64081290-64081309 | Msa0563640:intron | 25.0% |
| ! | TTATTCAAGCAACATATTTC+TGG | + | chr4_1:64081544-64081563 | Msa0563640:intron | 25.0% |
| ! | ATTATGTAACTTGAATCACA+AGG | - | chr4_1:64081661-64081680 | None:intergenic | 25.0% |
| ! | ATTGTCTTCATATTCATAGT+AGG | + | chr4_1:64081835-64081854 | Msa0563640:intron | 25.0% |
| !! | AGGAAATTTTTCCCAAATTT+GGG | - | chr4_1:64082003-64082022 | None:intergenic | 25.0% |
| ! | ATTGCAAAAAATTGAAGCAA+GGG | - | chr4_1:64082060-64082079 | None:intergenic | 25.0% |
| ! | CAAAATGCTGAAAAAAACTT+TGG | - | chr4_1:64082102-64082121 | None:intergenic | 25.0% |
| ! | AAAAAGAAGGAAATAATTGC+GGG | - | chr4_1:64082508-64082527 | None:intergenic | 25.0% |
| ! | GAAAAAGAAGGAAATAATTG+CGG | - | chr4_1:64082509-64082528 | None:intergenic | 25.0% |
| ! | GAATACTTCTTACATAACAT+TGG | + | chr4_1:64082643-64082662 | Msa0563640:CDS | 25.0% |
| ! | CTACATATATGTATGCATAT+GGG | + | chr4_1:64082717-64082736 | Msa0563640:CDS | 25.0% |
| CTTACTTGTTTGGTAAACAA+AGG | + | chr4_1:64077324-64077343 | Msa0563640:CDS | 30.0% | |
| ACAACATAACAACTAGGAAA+TGG | + | chr4_1:64077397-64077416 | Msa0563640:CDS | 30.0% | |
| !! | TTTACAACTTGCTAGTTGTT+GGG | + | chr4_1:64077571-64077590 | Msa0563640:intron | 30.0% |
| CATAATAGATTCATAGGCTA+AGG | - | chr4_1:64077653-64077672 | None:intergenic | 30.0% | |
| GAAATTCAATTTGAGTCATG+TGG | - | chr4_1:64078295-64078314 | None:intergenic | 30.0% | |
| TTGGATTCTCTATTCAAACT+CGG | - | chr4_1:64078401-64078420 | None:intergenic | 30.0% | |
| ! | ACAAGTTGTTCATGAGATTT+TGG | - | chr4_1:64078420-64078439 | None:intergenic | 30.0% |
| !! | TTGTTTCTGTTAGTCTTTGT+GGG | + | chr4_1:64078436-64078455 | Msa0563640:intron | 30.0% |
| ATCTATAGTGACTCAATTGA+TGG | + | chr4_1:64078471-64078490 | Msa0563640:intron | 30.0% | |
| CACATCATAAAACTCTAAAC+GGG | + | chr4_1:64078566-64078585 | Msa0563640:intron | 30.0% | |
| ACATCATAAAACTCTAAACG+GGG | + | chr4_1:64078567-64078586 | Msa0563640:intron | 30.0% | |
| TAAGTGTATAAAACTAGGGA+TGG | - | chr4_1:64078610-64078629 | None:intergenic | 30.0% | |
| ! | GAGATTAGTCATGGTATAAA+TGG | - | chr4_1:64078714-64078733 | None:intergenic | 30.0% |
| AACTTCATCAAAACATGAAC+AGG | + | chr4_1:64078854-64078873 | Msa0563640:intron | 30.0% | |
| CAGTTCTCTTTCATATAATC+AGG | - | chr4_1:64078998-64079017 | None:intergenic | 30.0% | |
| TAGTATCATCCTAATCCATA+AGG | + | chr4_1:64079311-64079330 | Msa0563640:intron | 30.0% | |
| AGTGCATATTTGATTCAACA+TGG | + | chr4_1:64079386-64079405 | Msa0563640:intron | 30.0% | |
| TGGCCTATTAACAAAATAAC+GGG | + | chr4_1:64079729-64079748 | Msa0563640:intron | 30.0% | |
| TTATAGTGTAATGGCCATTA+GGG | - | chr4_1:64079758-64079777 | None:intergenic | 30.0% | |
| ATTAGATCATCGTTTCATTG+TGG | + | chr4_1:64079913-64079932 | Msa0563640:intron | 30.0% | |
| ! | ACTGTCTTGAAAATTTTACC+AGG | + | chr4_1:64079943-64079962 | Msa0563640:intron | 30.0% |
| AATCAGGTATTAAGAATACC+TGG | - | chr4_1:64079964-64079983 | None:intergenic | 30.0% | |
| TCTCTAGTCAGATTCATATT+AGG | - | chr4_1:64080181-64080200 | None:intergenic | 30.0% | |
| !!! | TTTTTTTTTTGTGTCTGGGT+TGG | + | chr4_1:64080246-64080265 | Msa0563640:intron | 30.0% |
| GACAATGCATAAAATATGCA+AGG | - | chr4_1:64080336-64080355 | None:intergenic | 30.0% | |
| ! | CTTATATTGTTTTCCTCTTC+AGG | + | chr4_1:64081067-64081086 | Msa0563640:intron | 30.0% |
| TAGTTATAGAGGAAGAGAAA+GGG | - | chr4_1:64081094-64081113 | None:intergenic | 30.0% | |
| ATAGTTATAGAGGAAGAGAA+AGG | - | chr4_1:64081095-64081114 | None:intergenic | 30.0% | |
| CAAAATATTCATCATCAGAG+AGG | + | chr4_1:64081451-64081470 | Msa0563640:intron | 30.0% | |
| ! | TTGAGTTGTTGTACATTTCA+AGG | - | chr4_1:64081702-64081721 | None:intergenic | 30.0% |
| AGACCATATAATGATACACA+CGG | - | chr4_1:64081757-64081776 | None:intergenic | 30.0% | |
| !! | AGGAAGCATATGAGTATTTT+TGG | + | chr4_1:64081855-64081874 | Msa0563640:intron | 30.0% |
| !!! | CATTGGTGTTAACACTTTTT+TGG | + | chr4_1:64081912-64081931 | Msa0563640:intron | 30.0% |
| AGTTATGAAACCCCAAATTT+GGG | + | chr4_1:64081989-64082008 | Msa0563640:intron | 30.0% | |
| ! | GGAAATTTTTCCCAAATTTG+GGG | - | chr4_1:64082002-64082021 | None:intergenic | 30.0% |
| ! | CAGGAAATTTTTCCCAAATT+TGG | - | chr4_1:64082004-64082023 | None:intergenic | 30.0% |
| ACAATCTCAAATAGATCTTC+AGG | - | chr4_1:64082023-64082042 | None:intergenic | 30.0% | |
| TTGCAAAAAATTGAAGCAAG+GGG | - | chr4_1:64082059-64082078 | None:intergenic | 30.0% | |
| CATTGCAAAAAATTGAAGCA+AGG | - | chr4_1:64082061-64082080 | None:intergenic | 30.0% | |
| !!! | CTTGCTTCAATTTTTTGCAA+TGG | + | chr4_1:64082059-64082078 | Msa0563640:intron | 30.0% |
| !! | TTTTACCTGTTTCTTCTACA+GGG | + | chr4_1:64082246-64082265 | Msa0563640:CDS | 30.0% |
| !! | GTTATGTAAGAAGTATTCAG+TGG | - | chr4_1:64082641-64082660 | None:intergenic | 30.0% |
| GCTACATATATGTATGCATA+TGG | + | chr4_1:64082716-64082735 | Msa0563640:CDS | 30.0% | |
| ! | TCGTGTAGTTTTCTTCCAAT+TGG | - | chr4_1:64077438-64077457 | None:intergenic | 35.0% |
| GAAATGCAGTACCATATACA+TGG | - | chr4_1:64077469-64077488 | None:intergenic | 35.0% | |
| ACTAGATCAAGAAATTGCTC+AGG | - | chr4_1:64077499-64077518 | None:intergenic | 35.0% | |
| AGTATTTACCTCCAATCATG+AGG | + | chr4_1:64077545-64077564 | Msa0563640:intron | 35.0% | |
| GTTGTAAAGAACCTCATGAT+TGG | - | chr4_1:64077559-64077578 | None:intergenic | 35.0% | |
| !! | CTTTACAACTTGCTAGTTGT+TGG | + | chr4_1:64077570-64077589 | Msa0563640:intron | 35.0% |
| AGTTATAGTTACATTGGTGG+AGG | - | chr4_1:64077771-64077790 | None:intergenic | 35.0% | |
| TAATGTAACTCGCAACTTGA+AGG | + | chr4_1:64077974-64077993 | Msa0563640:intron | 35.0% | |
| CAAAAGAATCACGTTGGAAT+TGG | - | chr4_1:64078131-64078150 | None:intergenic | 35.0% | |
| CAAAAGCAAAAGAATCACGT+TGG | - | chr4_1:64078137-64078156 | None:intergenic | 35.0% | |
| ! | GTAGTGAAACACTTTAGGTT+AGG | - | chr4_1:64078190-64078209 | None:intergenic | 35.0% |
| ! | GAATGGTAGTGAAACACTTT+AGG | - | chr4_1:64078195-64078214 | None:intergenic | 35.0% |
| ATTCAATTTGAGTCATGTGG+TGG | - | chr4_1:64078292-64078311 | None:intergenic | 35.0% | |
| !! | CTTGTTTCTGTTAGTCTTTG+TGG | + | chr4_1:64078435-64078454 | Msa0563640:intron | 35.0% |
| ! | TATACATGGATTTGGTTCAG+AGG | + | chr4_1:64078535-64078554 | Msa0563640:intron | 35.0% |
| ! | ATACATGGATTTGGTTCAGA+GGG | + | chr4_1:64078536-64078555 | Msa0563640:intron | 35.0% |
| TAAAACTAGGGATGGCAATA+CGG | - | chr4_1:64078602-64078621 | None:intergenic | 35.0% | |
| !! | GGGATTAGTCATGGTATAAA+TGG | - | chr4_1:64078685-64078704 | None:intergenic | 35.0% |
| ! | CATGGTATAAATGGTAACGA+GGG | - | chr4_1:64078705-64078724 | None:intergenic | 35.0% |
| ! | TCATGGTATAAATGGTAACG+AGG | - | chr4_1:64078706-64078725 | None:intergenic | 35.0% |
| ! | TGTAATCGTGAGATTAGTCA+TGG | - | chr4_1:64078723-64078742 | None:intergenic | 35.0% |
| ATCAAAACATGAACAGGAAC+TGG | + | chr4_1:64078860-64078879 | Msa0563640:intron | 35.0% | |
| TCAAAACATGAACAGGAACT+GGG | + | chr4_1:64078861-64078880 | Msa0563640:intron | 35.0% | |
| ATTCGTGTCAAGTGTATTGT+CGG | - | chr4_1:64079163-64079182 | None:intergenic | 35.0% | |
| TATCATCCTAATCCATAAGG+AGG | + | chr4_1:64079314-64079333 | Msa0563640:intron | 35.0% | |
| TATGTACCTCCTTATGGATT+AGG | - | chr4_1:64079323-64079342 | None:intergenic | 35.0% | |
| GAATCAAATATGCACTCAAG+TGG | - | chr4_1:64079382-64079401 | None:intergenic | 35.0% | |
| ! | AAAATAACGGGAAACCCTAA+TGG | + | chr4_1:64079741-64079760 | Msa0563640:intron | 35.0% |
| CTTATAGTGTAATGGCCATT+AGG | - | chr4_1:64079759-64079778 | None:intergenic | 35.0% | |
| AATGGCCATTACACTATAAG+AGG | + | chr4_1:64079759-64079778 | Msa0563640:intron | 35.0% | |
| CACAACCTCTTATAGTGTAA+TGG | - | chr4_1:64079767-64079786 | None:intergenic | 35.0% | |
| !! | AAAGAGAGTATTGTCGTGTA+CGG | - | chr4_1:64079802-64079821 | None:intergenic | 35.0% |
| TATGAATCTGACTAGAGATG+TGG | + | chr4_1:64080183-64080202 | Msa0563640:intron | 35.0% | |
| ATGAATCTGACTAGAGATGT+GGG | + | chr4_1:64080184-64080203 | Msa0563640:intron | 35.0% | |
| TGCATAATATGCAAGGTATG+AGG | - | chr4_1:64080274-64080293 | None:intergenic | 35.0% | |
| CAGACAATGCATAATATGCA+AGG | - | chr4_1:64080281-64080300 | None:intergenic | 35.0% | |
| !!! | ATGCATTGTCTGTTTTTTGG+TGG | + | chr4_1:64080289-64080308 | Msa0563640:intron | 35.0% |
| TGCATAAAATATGCAAGGTC+CGG | - | chr4_1:64080331-64080350 | None:intergenic | 35.0% | |
| ! | GCAAATTTTCTGAGTTGTTG+AGG | + | chr4_1:64081026-64081045 | Msa0563640:intron | 35.0% |
| TAGAATTACCATGCAGAGAA+AGG | + | chr4_1:64081374-64081393 | Msa0563640:intron | 35.0% | |
| ! | TGTGCATTGTTTCTTTGTCA+TGG | + | chr4_1:64081572-64081591 | Msa0563640:intron | 35.0% |
| TCATGGTGTGTATAGTATGA+AGG | + | chr4_1:64081589-64081608 | Msa0563640:intron | 35.0% | |
| CATGGTGTGTATAGTATGAA+GGG | + | chr4_1:64081590-64081609 | Msa0563640:intron | 35.0% | |
| ATGGTGTGTATAGTATGAAG+GGG | + | chr4_1:64081591-64081610 | Msa0563640:intron | 35.0% | |
| AGGAATATGCAAGTAAGGAA+AGG | - | chr4_1:64081641-64081660 | None:intergenic | 35.0% | |
| TCACAAGGAATATGCAAGTA+AGG | - | chr4_1:64081646-64081665 | None:intergenic | 35.0% | |
| CAACCGTGTGTATCATTATA+TGG | + | chr4_1:64081751-64081770 | Msa0563640:intron | 35.0% | |
| !!! | ACACTTTTTTGGCCTTTTCA+TGG | + | chr4_1:64081923-64081942 | Msa0563640:intron | 35.0% |
| ! | ATTTGGGGTTTCATAACTCT+TGG | - | chr4_1:64081987-64082006 | None:intergenic | 35.0% |
| GAGTTATGAAACCCCAAATT+TGG | + | chr4_1:64081988-64082007 | Msa0563640:intron | 35.0% | |
| ATGCTGAAAAAAACTTTGGG+AGG | - | chr4_1:64082098-64082117 | None:intergenic | 35.0% | |
| CCAAAAGTTGTGTAAAACCA+TGG | - | chr4_1:64082143-64082162 | None:intergenic | 35.0% | |
| !! | CCATGGTTTTACACAACTTT+TGG | + | chr4_1:64082140-64082159 | Msa0563640:CDS | 35.0% |
| GTAGAAGAAACAGGTAAAAC+AGG | - | chr4_1:64082245-64082264 | None:intergenic | 35.0% | |
| !! | GTTTTACCTGTTTCTTCTAC+AGG | + | chr4_1:64082245-64082264 | Msa0563640:CDS | 35.0% |
| ! | TTTACCTGTTTCTTCTACAG+GGG | + | chr4_1:64082247-64082266 | Msa0563640:CDS | 35.0% |
| ATGACTCAGTAACAAAGTAC+TGG | + | chr4_1:64082450-64082469 | Msa0563640:CDS | 35.0% | |
| ! | ATAACATTGGTTGAGTCTGA+TGG | + | chr4_1:64082656-64082675 | Msa0563640:CDS | 35.0% |
| ! | TGATGGACAAATCATGTATG+TGG | + | chr4_1:64082673-64082692 | Msa0563640:CDS | 35.0% |
| GATGGACAAATCATGTATGT+GGG | + | chr4_1:64082674-64082693 | Msa0563640:CDS | 35.0% | |
| GCGAGTTAAGCTTACTTGTT+TGG | + | chr4_1:64077314-64077333 | Msa0563640:CDS | 40.0% | |
| AACAACTAGGAAATGGCTGA+AGG | + | chr4_1:64077404-64077423 | Msa0563640:CDS | 40.0% | |
| CGAGAGAAGAACCATGTATA+TGG | + | chr4_1:64077455-64077474 | Msa0563640:intron | 40.0% | |
| ATCAAGAAATTGCTCAGGCA+TGG | - | chr4_1:64077494-64077513 | None:intergenic | 40.0% | |
| GTAAAGAACCTCATGATTGG+AGG | - | chr4_1:64077556-64077575 | None:intergenic | 40.0% | |
| AGTTGTCAGTTGCAATTGTG+GGG | - | chr4_1:64078072-64078091 | None:intergenic | 40.0% | |
| GAGTTGTCAGTTGCAATTGT+GGG | - | chr4_1:64078073-64078092 | None:intergenic | 40.0% | |
| AGAGTTGTCAGTTGCAATTG+TGG | - | chr4_1:64078074-64078093 | None:intergenic | 40.0% | |
| ACACACAAAACTACTGATGG+AGG | - | chr4_1:64078162-64078181 | None:intergenic | 40.0% | |
| !!! | TCCATCAGTAGTTTTGTGTG+TGG | + | chr4_1:64078161-64078180 | Msa0563640:intron | 40.0% |
| ACCACACACAAAACTACTGA+TGG | - | chr4_1:64078165-64078184 | None:intergenic | 40.0% | |
| !!! | ATCAGTAGTTTTGTGTGTGG+TGG | + | chr4_1:64078164-64078183 | Msa0563640:intron | 40.0% |
| ! | GGTCTCTAAGAAAATGGGAA+TGG | - | chr4_1:64078212-64078231 | None:intergenic | 40.0% |
| ! | GAGGTGGTCTCTAAGAAAAT+GGG | - | chr4_1:64078217-64078236 | None:intergenic | 40.0% |
| ! | AATTTGAGTCATGTGGTGGA+GGG | - | chr4_1:64078288-64078307 | None:intergenic | 40.0% |
| ! | TAGTGACTCAATTGATGGCA+TGG | + | chr4_1:64078476-64078495 | Msa0563640:intron | 40.0% |
| GTGATGAAACATGGAGAAGA+TGG | + | chr4_1:64078498-64078517 | Msa0563640:intron | 40.0% | |
| TCATAAAACTCTAAACGGGG+TGG | + | chr4_1:64078570-64078589 | Msa0563640:intron | 40.0% | |
| CATAAAACTCTAAACGGGGT+GGG | + | chr4_1:64078571-64078590 | Msa0563640:intron | 40.0% | |
| ATATCCCGTGAAAATGCGAA+TGG | + | chr4_1:64079067-64079086 | Msa0563640:intron | 40.0% | |
| ! | TTCTGCCATTCGCATTTTCA+CGG | - | chr4_1:64079075-64079094 | None:intergenic | 40.0% |
| TGAAAATGCGAATGGCAGAA+AGG | + | chr4_1:64079075-64079094 | Msa0563640:intron | 40.0% | |
| TTGACACGAATATGTCGACA+CGG | + | chr4_1:64079172-64079191 | Msa0563640:intron | 40.0% | |
| TGTGCTCAAGTACTTTGTGT+TGG | + | chr4_1:64079478-64079497 | Msa0563640:intron | 40.0% | |
| AATATGAGTGGATGTCTCGA+TGG | + | chr4_1:64079709-64079728 | Msa0563640:intron | 40.0% | |
| TTGTCGTGTACGGTGTATTT+GGG | - | chr4_1:64079792-64079811 | None:intergenic | 40.0% | |
| ATTGTCGTGTACGGTGTATT+TGG | - | chr4_1:64079793-64079812 | None:intergenic | 40.0% | |
| TGTATGCCTCAAGTTCTCTT+CGG | - | chr4_1:64079834-64079853 | None:intergenic | 40.0% | |
| AACTTGAGGCATACATGTAC+CGG | + | chr4_1:64079839-64079858 | Msa0563640:intron | 40.0% | |
| !! | TGATTTGGTTCTTCCTCAAC+CGG | - | chr4_1:64079861-64079880 | None:intergenic | 40.0% |
| TCTGATCATGTTCATGCTCA+AGG | + | chr4_1:64080018-64080037 | Msa0563640:intron | 40.0% | |
| TCACACTTGAGAGAGATTGT+TGG | + | chr4_1:64080215-64080234 | Msa0563640:intron | 40.0% | |
| !!! | CATTGTCTGTTTTTTGGTGG+TGG | + | chr4_1:64080292-64080311 | Msa0563640:intron | 40.0% |
| GCATAAAATATGCAAGGTCC+GGG | - | chr4_1:64080330-64080349 | None:intergenic | 40.0% | |
| !! | ACTTTCTAGCTGCCATGAAA+AGG | - | chr4_1:64081938-64081957 | None:intergenic | 40.0% |
| TCAAGTCGCAAGTAAATCCA+TGG | + | chr4_1:64082123-64082142 | Msa0563640:intron | 40.0% | |
| TCCTTCTGTAACACAAACAC+CGG | + | chr4_1:64082214-64082233 | Msa0563640:CDS | 40.0% | |
| ! | TTACCTGTTTCTTCTACAGG+GGG | + | chr4_1:64082248-64082267 | Msa0563640:CDS | 40.0% |
| ATCTTGAAGGATCGAGTTAG+TGG | - | chr4_1:64082323-64082342 | None:intergenic | 40.0% | |
| ! | TCCTTCAAGATTTTGCTGAC+TGG | + | chr4_1:64082332-64082351 | Msa0563640:CDS | 40.0% |
| TCCAGTCAGCAAAATCTTGA+AGG | - | chr4_1:64082336-64082355 | None:intergenic | 40.0% | |
| !! | TTTTCGGGGATGACAATGAA+TGG | + | chr4_1:64082374-64082393 | Msa0563640:CDS | 40.0% |
| TACCTGCATGTATTTGTCCT+AGG | - | chr4_1:64082478-64082497 | None:intergenic | 40.0% | |
| GCAACAGGTTTGGAAAAAGA+AGG | - | chr4_1:64082521-64082540 | None:intergenic | 40.0% | |
| ! | TTTTCCAAACCTGTTGCCAT+AGG | + | chr4_1:64082524-64082543 | Msa0563640:CDS | 40.0% |
| !! | GATGTAAAGTGTTGTGCCTA+TGG | - | chr4_1:64082543-64082562 | None:intergenic | 40.0% |
| TAGGCACAACACTTTACATC+AGG | + | chr4_1:64082543-64082562 | Msa0563640:CDS | 40.0% | |
| ATCAGGCATATGTATCCAGA+AGG | + | chr4_1:64082560-64082579 | Msa0563640:CDS | 40.0% | |
| TCAGGCATATGTATCCAGAA+GGG | + | chr4_1:64082561-64082580 | Msa0563640:CDS | 40.0% | |
| TGTGTGCATATGTGAGCTTC+TGG | + | chr4_1:64077233-64077252 | Msa0563640:CDS | 45.0% | |
| ! | AGTTTTCTTCCAATTGGCGC+AGG | - | chr4_1:64077432-64077451 | None:intergenic | 45.0% |
| ! | GGAGGTGGTCTCTAAGAAAA+TGG | - | chr4_1:64078218-64078237 | None:intergenic | 45.0% |
| GGATATCCAAGGTATAGGTG+GGG | - | chr4_1:64078267-64078286 | None:intergenic | 45.0% | |
| GGGATATCCAAGGTATAGGT+GGG | - | chr4_1:64078268-64078287 | None:intergenic | 45.0% | |
| AGGGATATCCAAGGTATAGG+TGG | - | chr4_1:64078269-64078288 | None:intergenic | 45.0% | |
| TGGAGGGATATCCAAGGTAT+AGG | - | chr4_1:64078272-64078291 | None:intergenic | 45.0% | |
| CAATTTGAGTCATGTGGTGG+AGG | - | chr4_1:64078289-64078308 | None:intergenic | 45.0% | |
| ! | GATGGCATGGTGATGAAACA+TGG | + | chr4_1:64078489-64078508 | Msa0563640:intron | 45.0% |
| !! | TGGTAACGAGGGATTAGTCA+TGG | - | chr4_1:64078694-64078713 | None:intergenic | 45.0% |
| !! | GGCATAATGGAGCTTTGAGT+TGG | - | chr4_1:64078955-64078974 | None:intergenic | 45.0% |
| ATAATCAGGACAGCAACGAG+TGG | - | chr4_1:64078984-64079003 | None:intergenic | 45.0% | |
| ! | TCTGCCATTCGCATTTTCAC+GGG | - | chr4_1:64079074-64079093 | None:intergenic | 45.0% |
| GCACTCAAGTGGAAGTCAAA+GGG | - | chr4_1:64079371-64079390 | None:intergenic | 45.0% | |
| TGCACTCAAGTGGAAGTCAA+AGG | - | chr4_1:64079372-64079391 | None:intergenic | 45.0% | |
| GTATGCCTCAAGTTCTCTTC+GGG | - | chr4_1:64079833-64079852 | None:intergenic | 45.0% | |
| ACAGTTAGCGACGGTTGATT+TGG | - | chr4_1:64079876-64079895 | None:intergenic | 45.0% | |
| GCGCAATAAACAGTTAGCGA+CGG | - | chr4_1:64079885-64079904 | None:intergenic | 45.0% | |
| !! | GGCTATGACACCACTTTTGT+TGG | - | chr4_1:64080125-64080144 | None:intergenic | 45.0% |
| !! | AGTGGTGTCATAGCCTAGTT+AGG | + | chr4_1:64080130-64080149 | Msa0563640:intron | 45.0% |
| TGTCATAGCCTAGTTAGGCT+CGG | + | chr4_1:64080135-64080154 | Msa0563640:intron | 45.0% | |
| TAGTTAGCGCTTAGCTCAGT+TGG | - | chr4_1:64080406-64080425 | None:intergenic | 45.0% | |
| GTTTCATGCCTTTCTCTGCA+TGG | - | chr4_1:64081385-64081404 | None:intergenic | 45.0% | |
| ! | GCAGAGAAAGGCATGAAACA+TGG | + | chr4_1:64081386-64081405 | Msa0563640:intron | 45.0% |
| TTCATGGCAGCTAGAAAGTC+CGG | + | chr4_1:64081939-64081958 | Msa0563640:intron | 45.0% | |
| CTCGATCAAACTGAAACCTC+CGG | - | chr4_1:64081961-64081980 | None:intergenic | 45.0% | |
| TCCGGTGTTTGTGTTACAGA+AGG | - | chr4_1:64082218-64082237 | None:intergenic | 45.0% | |
| CTGTAACACAAACACCGGAA+AGG | + | chr4_1:64082219-64082238 | Msa0563640:CDS | 45.0% | |
| ACAGGTAAAACAGGCCTTTC+CGG | - | chr4_1:64082236-64082255 | None:intergenic | 45.0% | |
| !!! | AATCGCGAGCTGGGTTTTTT+CGG | + | chr4_1:64082358-64082377 | Msa0563640:CDS | 45.0% |
| ! | ATGACAATGAATGGAGGTGC+AGG | + | chr4_1:64082383-64082402 | Msa0563640:CDS | 45.0% |
| AGGTTACAAGGTCCTACGAT+TGG | + | chr4_1:64082403-64082422 | Msa0563640:CDS | 45.0% | |
| GGTTACAAGGTCCTACGATT+GGG | + | chr4_1:64082404-64082423 | Msa0563640:CDS | 45.0% | |
| !! | GTCCTACGATTGGGTATTGA+TGG | + | chr4_1:64082413-64082432 | Msa0563640:CDS | 45.0% |
| CACCATCAATACCCAATCGT+AGG | - | chr4_1:64082418-64082437 | None:intergenic | 45.0% | |
| !! | GTAACAAAGTACTGGAGCCT+AGG | + | chr4_1:64082458-64082477 | Msa0563640:CDS | 45.0% |
| AGCCTAGGACAAATACATGC+AGG | + | chr4_1:64082473-64082492 | Msa0563640:CDS | 45.0% | |
| !! | TAAGAAGTATTCAGTGGCGC+TGG | - | chr4_1:64082635-64082654 | None:intergenic | 45.0% |
| !!! | TCTTTTATTTATTTATTTTT+AGG | + | chr4_1:64080789-64080808 | Msa0563640:intron | 5.0% |
| !!! | CTTTTATTTATTTATTTTTA+GGG | + | chr4_1:64080790-64080809 | Msa0563640:intron | 5.0% |
| !!! | TTTTATTTATTTATTTTTAG+GGG | + | chr4_1:64080791-64080810 | Msa0563640:intron | 5.0% |
| ! | GGCGAATTGGTTTATGGAGG+TGG | - | chr4_1:64078233-64078252 | None:intergenic | 50.0% |
| ! | CGAGGCGAATTGGTTTATGG+AGG | - | chr4_1:64078236-64078255 | None:intergenic | 50.0% |
| ! | GGACGAGGCGAATTGGTTTA+TGG | - | chr4_1:64078239-64078258 | None:intergenic | 50.0% |
| TAAACCAATTCGCCTCGTCC+CGG | + | chr4_1:64078239-64078258 | Msa0563640:intron | 50.0% | |
| ! | ATGTGGTGGAGGGATATCCA+AGG | - | chr4_1:64078278-64078297 | None:intergenic | 50.0% |
| AAACTCTAAACGGGGTGGGT+TGG | + | chr4_1:64078575-64078594 | Msa0563640:intron | 50.0% | |
| !! | AGGCATACATGTACCGGTTG+AGG | + | chr4_1:64079845-64079864 | Msa0563640:intron | 50.0% |
| ! | ATAGCCTAGTTAGGCTCGGT+GGG | + | chr4_1:64080139-64080158 | Msa0563640:intron | 50.0% |
| GTGAGCTTAGCTCAGTTGGT+AGG | - | chr4_1:64080358-64080377 | None:intergenic | 50.0% | |
| GAAGAGAAAGGGACCTGAAG+AGG | - | chr4_1:64081083-64081102 | None:intergenic | 50.0% | |
| AGACCCCCTGTAGAAGAAAC+AGG | - | chr4_1:64082254-64082273 | None:intergenic | 50.0% | |
| !!! | ATCGCGAGCTGGGTTTTTTC+GGG | + | chr4_1:64082359-64082378 | Msa0563640:CDS | 50.0% |
| TCGGGGATGACAATGAATGG+AGG | + | chr4_1:64082377-64082396 | Msa0563640:CDS | 50.0% | |
| ! | GAATGGAGGTGCAGGTTACA+AGG | + | chr4_1:64082391-64082410 | Msa0563640:CDS | 50.0% |
| TGTGCCTATGGCAACAGGTT+TGG | - | chr4_1:64082531-64082550 | None:intergenic | 50.0% | |
| AGTGTTGTGCCTATGGCAAC+AGG | - | chr4_1:64082536-64082555 | None:intergenic | 50.0% | |
| TCGCAGGAAAGAATCCCTTC+TGG | - | chr4_1:64082578-64082597 | None:intergenic | 50.0% | |
| CTGAAGGTTCCTGCGCCAAT+TGG | + | chr4_1:64077420-64077439 | Msa0563640:CDS | 55.0% | |
| !! | CCACAAGGGCGTTGTGTTAG+TGG | - | chr4_1:64078038-64078057 | None:intergenic | 55.0% |
| CCACTAACACAACGCCCTTG+TGG | + | chr4_1:64078035-64078054 | Msa0563640:intron | 55.0% | |
| CAAGGTATAGGTGGGGTTCC+GGG | - | chr4_1:64078260-64078279 | None:intergenic | 55.0% | |
| CCAAGGTATAGGTGGGGTTC+CGG | - | chr4_1:64078261-64078280 | None:intergenic | 55.0% | |
| ! | CGAGTGGAGGCATGGCATAA+TGG | - | chr4_1:64078968-64078987 | None:intergenic | 55.0% |
| ATCAGGACAGCAACGAGTGG+AGG | - | chr4_1:64078981-64079000 | None:intergenic | 55.0% | |
| CCTCAAGTTCTCTTCGGGTG+GGG | - | chr4_1:64079828-64079847 | None:intergenic | 55.0% | |
| GCCTCAAGTTCTCTTCGGGT+GGG | - | chr4_1:64079829-64079848 | None:intergenic | 55.0% | |
| TGCCTCAAGTTCTCTTCGGG+TGG | - | chr4_1:64079830-64079849 | None:intergenic | 55.0% | |
| CATAGCCTAGTTAGGCTCGG+TGG | + | chr4_1:64080138-64080157 | Msa0563640:intron | 55.0% | |
| !! | TAGCCTAGTTAGGCTCGGTG+GGG | + | chr4_1:64080140-64080159 | Msa0563640:intron | 55.0% |
| !!! | CTGTTTTTTGGTGGTGGCCG+AGG | + | chr4_1:64080298-64080317 | Msa0563640:intron | 55.0% |
| CAAGGTCCGGGTTCAAACCT+CGG | - | chr4_1:64080318-64080337 | None:intergenic | 55.0% | |
| CCTCGTGAGCTTAGCTCAGT+TGG | - | chr4_1:64080362-64080381 | None:intergenic | 55.0% | |
| CCAACTGAGCTAAGCTCACG+AGG | + | chr4_1:64080359-64080378 | Msa0563640:intron | 55.0% | |
| ATGGCAGCTAGAAAGTCCGG+AGG | + | chr4_1:64081942-64081961 | Msa0563640:intron | 55.0% | |
| TGACTGGATCAATCGCGAGC+TGG | + | chr4_1:64082348-64082367 | Msa0563640:CDS | 55.0% | |
| GACTGGATCAATCGCGAGCT+GGG | + | chr4_1:64082349-64082368 | Msa0563640:CDS | 55.0% | |
| !!! | TCGCGAGCTGGGTTTTTTCG+GGG | + | chr4_1:64082360-64082379 | Msa0563640:CDS | 55.0% |
| CTTTCCTGCGACACGTCAAC+TGG | + | chr4_1:64082587-64082606 | Msa0563640:CDS | 55.0% | |
| AATGCCAGTTGACGTGTCGC+AGG | - | chr4_1:64082594-64082613 | None:intergenic | 55.0% | |
| GCGACACGTCAACTGGCATT+TGG | + | chr4_1:64082594-64082613 | Msa0563640:CDS | 55.0% | |
| GGGATACGAGCGTGCCACAA+GGG | - | chr4_1:64078052-64078071 | None:intergenic | 60.0% | |
| CCGGAACCCCACCTATACCT+TGG | + | chr4_1:64078258-64078277 | Msa0563640:intron | 60.0% | |
| GACAGCAACGAGTGGAGGCA+TGG | - | chr4_1:64078976-64078995 | None:intergenic | 60.0% | |
| CCCCACCCGAAGAGAACTTG+AGG | + | chr4_1:64079825-64079844 | Msa0563640:intron | 60.0% | |
| !! | AGCCTAGTTAGGCTCGGTGG+GGG | + | chr4_1:64080141-64080160 | Msa0563640:intron | 60.0% |
| TGGTGGCCGAGGTTTGAACC+CGG | + | chr4_1:64080309-64080328 | Msa0563640:intron | 60.0% | |
| GGGGATACGAGCGTGCCACA+AGG | - | chr4_1:64078053-64078072 | None:intergenic | 65.0% | |
| GGTTCCGGGACGAGGCGAAT+TGG | - | chr4_1:64078246-64078265 | None:intergenic | 65.0% | |
| ATAGGTGGGGTTCCGGGACG+AGG | - | chr4_1:64078254-64078273 | None:intergenic | 65.0% | |
| CTCCCCCACCGAGCCTAACT+AGG | - | chr4_1:64080146-64080165 | None:intergenic | 65.0% | |
| CTCGGTGGGGGAGCAGGATT+GGG | + | chr4_1:64080153-64080172 | Msa0563640:intron | 65.0% | |
| !! | GTTAGGCTCGGTGGGGGAGC+AGG | + | chr4_1:64080147-64080166 | Msa0563640:intron | 70.0% |
| ! | GCTCGGTGGGGGAGCAGGAT+TGG | + | chr4_1:64080152-64080171 | Msa0563640:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 64077195 | 64082766 | 64077195 | ID=Msa0563640;Name=Msa0563640 |
| chr4_1 | mRNA | 64077195 | 64082766 | 64077195 | ID=Msa0563640-mRNA-1;Parent=Msa0563640;Name=Msa0563640-mRNA-1;_AED=0.39;_eAED=0.42;_QI=0|0|0|1|0|0.25|4|0|318 |
| chr4_1 | exon | 64077195 | 64077261 | 64077195 | ID=Msa0563640-mRNA-1:exon:20441;Parent=Msa0563640-mRNA-1 |
| chr4_1 | exon | 64077277 | 64077469 | 64077277 | ID=Msa0563640-mRNA-1:exon:20442;Parent=Msa0563640-mRNA-1 |
| chr4_1 | exon | 64078929 | 64078986 | 64078929 | ID=Msa0563640-mRNA-1:exon:20443;Parent=Msa0563640-mRNA-1 |
| chr4_1 | exon | 64082128 | 64082766 | 64082128 | ID=Msa0563640-mRNA-1:exon:20444;Parent=Msa0563640-mRNA-1 |
| chr4_1 | CDS | 64077195 | 64077261 | 64077195 | ID=Msa0563640-mRNA-1:cds;Parent=Msa0563640-mRNA-1 |
| chr4_1 | CDS | 64077277 | 64077469 | 64077277 | ID=Msa0563640-mRNA-1:cds;Parent=Msa0563640-mRNA-1 |
| chr4_1 | CDS | 64078929 | 64078986 | 64078929 | ID=Msa0563640-mRNA-1:cds;Parent=Msa0563640-mRNA-1 |
| chr4_1 | CDS | 64082128 | 64082766 | 64082128 | ID=Msa0563640-mRNA-1:cds;Parent=Msa0563640-mRNA-1 |
| Gene Sequence |
| Protein sequence |
