AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1217430

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1217430 MtrunA17_Chr4g0066941 96.296 513 6 3 1 500 1 513 0.0 962
Msa1217430 MtrunA17_Chr2g0286151 66.935 496 127 6 18 500 11 482 0.0 557
Msa1217430 MtrunA17_Chr1g0195891 52.785 377 127 10 5 367 4 343 1.75e-112 336
Msa1217430 MtrunA17_Chr1g0195891 49.333 75 36 1 320 392 92 166 5.44e-17 82.4
Msa1217430 MtrunA17_Chr7g0249221 44.878 410 175 13 42 441 27 395 5.22e-103 315
Msa1217430 MtrunA17_Chr5g0438891 39.227 362 157 12 42 397 36 340 6.05e-72 234
Msa1217430 MtrunA17_Chr5g0438891 48.780 82 42 0 39 120 75 156 1.17e-19 91.3
Msa1217430 MtrunA17_Chr5g0438891 42.391 92 52 1 28 119 248 338 2.22e-15 78.2
Msa1217430 MtrunA17_Chr3g0116431 35.356 379 157 9 37 394 166 477 1.93e-64 217
Msa1217430 MtrunA17_Chr3g0116431 40.964 83 42 3 320 397 172 252 2.21e-11 66.2
Msa1217430 MtrunA17_Chr4g0058011 36.939 379 151 13 38 396 227 537 5.42e-63 215
Msa1217430 MtrunA17_Chr8g0356241 32.609 368 200 10 42 392 138 474 3.72e-46 168
Msa1217430 MtrunA17_Chr8g0356241 33.898 177 79 4 21 163 167 339 1.41e-26 112
Msa1217430 MtrunA17_Chr8g0356241 35.135 185 73 4 35 173 302 485 1.33e-25 110
Msa1217430 MtrunA17_Chr8g0356241 42.683 82 39 3 320 393 139 220 1.54e-12 69.7
Msa1217430 MtrunA17_Chr1g0195901 57.303 89 35 2 396 484 1 86 2.56e-15 71.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1217430 AT5G18550.1 51.969 508 183 15 3 493 2 465 4.51e-146 427
Msa1217430 AT5G18550.4 53.669 477 166 14 3 462 2 440 1.75e-144 422
Msa1217430 AT2G47850.1 51.535 456 170 9 20 464 16 431 3.27e-144 422
Msa1217430 AT2G47850.3 51.535 456 170 9 20 464 16 431 3.27e-144 422
Msa1217430 AT5G18550.3 53.680 462 164 13 40 493 14 433 1.88e-141 414
Msa1217430 AT5G18550.2 50.296 507 180 15 3 493 2 452 8.63e-138 405
Msa1217430 AT3G06410.1 56.481 432 139 13 3 415 2 403 3.50e-131 389
Msa1217430 AT2G47850.2 46.711 456 166 10 20 464 16 405 2.54e-119 358
Msa1217430 AT3G02830.1 45.093 377 148 8 41 408 36 362 1.66e-97 300
Msa1217430 AT3G02830.1 42.857 84 47 1 310 392 28 111 7.47e-14 73.6
Msa1217430 AT3G02830.2 45.093 377 148 8 41 408 16 342 2.28e-97 299
Msa1217430 AT3G02830.2 42.857 84 47 1 310 392 8 91 8.26e-14 73.6
Msa1217430 AT2G47850.4 50.578 346 124 8 126 464 4 309 3.09e-94 290
Msa1217430 AT2G47850.4 51.765 85 41 0 79 163 156 240 4.70e-23 100
Msa1217430 AT2G47850.4 39.773 88 44 2 34 116 156 239 7.92e-16 79.3
Msa1217430 AT1G04990.1 37.360 356 152 11 42 392 44 333 2.50e-63 212
Msa1217430 AT1G04990.1 40.833 120 69 2 305 423 73 191 4.53e-21 95.9
Msa1217430 AT1G04990.1 42.683 82 47 0 40 121 85 166 2.85e-17 84.3
Msa1217430 AT1G04990.1 37.273 110 59 3 89 195 260 362 2.94e-12 68.9
Msa1217430 AT1G04990.6 37.360 356 152 11 42 392 44 333 2.50e-63 212
Msa1217430 AT1G04990.6 40.833 120 69 2 305 423 73 191 4.53e-21 95.9
Msa1217430 AT1G04990.6 42.683 82 47 0 40 121 85 166 2.85e-17 84.3
Msa1217430 AT1G04990.6 37.273 110 59 3 89 195 260 362 2.94e-12 68.9
Msa1217430 AT1G04990.2 37.360 356 152 11 42 392 44 333 2.50e-63 212
Msa1217430 AT1G04990.2 40.833 120 69 2 305 423 73 191 4.53e-21 95.9
Msa1217430 AT1G04990.2 42.683 82 47 0 40 121 85 166 2.85e-17 84.3
Msa1217430 AT1G04990.2 37.273 110 59 3 89 195 260 362 2.94e-12 68.9
Msa1217430 AT2G32930.3 32.225 481 229 17 42 494 14 425 2.78e-62 209
Msa1217430 AT2G32930.3 39.286 84 51 0 34 117 50 133 9.72e-16 79.7
Msa1217430 AT2G32930.2 32.225 481 229 17 42 494 41 452 3.91e-62 210
Msa1217430 AT2G32930.2 39.759 83 50 0 34 116 77 159 1.12e-15 79.7
Msa1217430 AT5G63260.1 38.360 378 158 14 42 403 98 416 1.79e-60 205
Msa1217430 AT5G63260.1 38.961 77 46 1 40 115 329 405 1.06e-13 73.6
Msa1217430 AT1G04990.5 36.338 355 137 12 42 392 44 313 4.55e-59 200
Msa1217430 AT1G04990.5 40.833 120 69 2 305 423 73 191 3.89e-21 95.5
Msa1217430 AT1G04990.5 42.683 82 47 0 40 121 85 166 3.53e-17 84.0
Msa1217430 AT5G16540.1 36.310 336 161 9 23 348 23 315 3.14e-58 197
Msa1217430 AT5G16540.1 53.261 92 41 1 315 404 236 327 4.42e-26 110
Msa1217430 AT5G16540.1 51.948 77 37 0 87 163 240 316 3.84e-19 89.7
Msa1217430 AT5G16540.1 46.667 75 38 1 320 392 85 159 8.74e-17 82.4
Msa1217430 AT5G16540.1 39.394 99 55 2 318 415 38 132 1.15e-12 70.1
Msa1217430 AT2G32930.1 32.017 481 226 18 42 494 41 448 3.20e-58 199
Msa1217430 AT5G16540.3 36.310 336 161 9 23 348 2 294 4.95e-58 196
Msa1217430 AT5G16540.3 53.261 92 41 1 315 404 215 306 4.08e-26 109
Msa1217430 AT5G16540.3 51.948 77 37 0 87 163 219 295 4.39e-19 89.0
Msa1217430 AT5G16540.3 46.667 75 38 1 320 392 64 138 9.66e-17 82.0
Msa1217430 AT5G16540.3 39.394 99 55 2 318 415 17 111 1.15e-12 69.7
Msa1217430 AT5G63260.2 36.802 394 158 15 42 403 98 432 3.93e-57 196
Msa1217430 AT5G63260.2 38.961 77 46 1 40 115 345 421 1.19e-13 73.6
Msa1217430 AT5G16540.2 35.777 341 149 11 23 348 23 308 1.20e-55 190
Msa1217430 AT5G16540.2 47.778 90 42 1 315 404 236 320 2.12e-20 93.2
Msa1217430 AT5G16540.2 46.667 75 38 1 320 392 85 159 8.32e-17 82.4
Msa1217430 AT5G16540.2 39.394 99 55 2 318 415 38 132 1.05e-12 70.1
Msa1217430 AT5G16540.4 47.692 195 84 5 23 214 2 181 2.87e-55 186
Msa1217430 AT5G16540.4 33.553 152 92 2 320 469 64 208 3.77e-17 82.0
Msa1217430 AT5G16540.4 60.000 55 20 1 315 367 215 269 2.64e-14 73.6
Msa1217430 AT5G16540.4 39.394 99 55 2 318 415 17 111 6.59e-13 69.3
Msa1217430 AT3G48440.1 35.156 384 167 13 31 391 93 417 3.58e-55 191
Msa1217430 AT3G48440.1 37.500 80 49 1 40 118 341 420 3.17e-13 72.0
Msa1217430 AT3G48440.1 29.508 183 68 5 313 440 101 277 5.26e-13 71.2
Msa1217430 AT1G04990.3 34.219 301 129 10 97 392 16 252 3.40e-41 150
Msa1217430 AT1G04990.3 43.000 100 55 2 325 423 12 110 1.58e-17 84.0
Msa1217430 AT1G04990.3 43.478 69 39 0 53 121 17 85 2.05e-14 74.7
Msa1217430 AT1G04990.3 37.273 110 59 3 89 195 179 281 1.68e-12 68.9
Msa1217430 AT1G04990.4 33.000 300 114 11 97 392 16 232 4.38e-37 139
Msa1217430 AT1G04990.4 43.000 100 55 2 325 423 12 110 1.16e-17 84.0
Msa1217430 AT1G04990.4 43.478 69 39 0 53 121 17 85 2.39e-14 74.3
Msa1217430 AT3G12680.1 41.060 151 61 3 39 163 219 367 1.41e-32 130
Msa1217430 AT3G12680.1 40.331 181 62 6 34 171 329 506 2.59e-28 118
Msa1217430 AT3G12680.1 42.969 128 64 3 42 163 171 295 2.98e-27 115
Msa1217430 AT3G12680.1 32.500 200 74 5 36 174 259 458 3.90e-23 103
Msa1217430 AT3G12680.1 48.810 84 34 1 318 392 416 499 3.59e-19 90.9
Msa1217430 AT3G12680.1 31.250 144 70 3 312 427 258 400 7.60e-16 80.5
Msa1217430 AT3G12680.1 38.614 101 54 3 320 412 172 272 1.12e-13 73.9
Msa1217430 AT3G12680.1 46.575 73 38 1 320 392 223 294 2.23e-13 72.8
Msa1217430 AT1G48195.1 46.250 80 41 1 316 393 3 82 4.82e-19 82.0
Msa1217430 AT1G48195.1 46.053 76 41 0 86 161 5 80 1.05e-16 75.5
Msa1217430 AT1G48195.1 37.662 77 47 1 40 115 4 80 2.03e-11 60.5

Find 227 sgRNAs with CRISPR-Local

Find 376 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGAAACTGGTTCGGATTTC+TGG 0.117451 8_1:+79705968 None:intergenic
TCCTGCTGATCAGGCCTTTC+AGG 0.127139 8_1:+79703985 None:intergenic
TCATTTGTCCAGGGCCCTTA+TGG 0.161593 8_1:-79704372 Msa1217430:CDS
AAAACAGGGGACTGTAAATT+TGG 0.217295 8_1:-79703946 Msa1217430:CDS
TGACAAGTAAACTGATAAAA+AGG 0.223297 8_1:+79701801 None:intergenic
GTTGGTTCGACGCAGCTTTA+TGG 0.252629 8_1:-79704171 Msa1217430:CDS
TTGTGATTGGTTTAGGTTAT+TGG 0.258647 8_1:-79705253 Msa1217430:intron
TAAGGGCTCCAGCCTGAAAA+AGG 0.262944 8_1:+79704321 None:intergenic
AGGACGGGATCGTGCAAATT+TGG 0.273979 8_1:-79704841 Msa1217430:CDS
CGGTAAACCTTTCGATATCT+TGG 0.304126 8_1:+79702011 None:intergenic
TTCAGGCTGGAGCCCTTATC+AGG 0.307461 8_1:-79704316 Msa1217430:intron
ACTCATGGAGGGTCTCAAAT+AGG 0.308129 8_1:-79702375 Msa1217430:three_prime_UTR
GGATGAAGCAGGCTCCTTGC+TGG 0.312902 8_1:+79702626 None:intergenic
CATTTGTCCAGGGCCCTTAT+GGG 0.325235 8_1:-79704371 Msa1217430:CDS
TACCGTGAAGAGAAGTTATC+AGG 0.333179 8_1:-79701993 Msa1217430:three_prime_UTR
GGCTGTACAGTTTGATAAAT+AGG 0.338710 8_1:+79704459 None:intergenic
AATGACTGTTGGACCTGAAC+TGG 0.339111 8_1:+79702334 None:intergenic
ACGGGCTGTCCAACTCGTTC+TGG 0.343305 8_1:+79705205 None:intergenic
GCTGGTCCTTATCAATCTTC+TGG 0.343679 8_1:-79704054 Msa1217430:CDS
TCACCAACAACCGTCTATTC+TGG 0.347917 8_1:-79704132 Msa1217430:CDS
ATTGGAGCTGCTAGGATTGC+CGG 0.355758 8_1:-79705235 Msa1217430:CDS
GCTGGTCCTTACCAATCTTC+TGG 0.357551 8_1:-79704084 Msa1217430:CDS
TCTAGGATGGTGATACTTGC+AGG 0.363592 8_1:+79704813 None:intergenic
GCAGGGTATGGTGGATTGGT+TGG 0.368471 8_1:-79705641 Msa1217430:intron
TTGGTTCGACGCAGCTTTAT+GGG 0.368819 8_1:-79704170 Msa1217430:CDS
TGCTGACATTCCTGCTGATC+AGG 0.370843 8_1:+79703976 None:intergenic
GACATTACCATTGGCCCATA+AGG 0.373452 8_1:+79704357 None:intergenic
CTGATTGTATCTATTATTTG+AGG 0.384105 8_1:-79705583 Msa1217430:CDS
CTGGATCCTGATGCAAGTTC+AGG 0.386934 8_1:+79702645 None:intergenic
AAAAGCAAGTTGCGACTGTA+TGG 0.387335 8_1:+79702217 None:intergenic
GCTCATTGATGATGACATTC+TGG 0.391929 8_1:+79702605 None:intergenic
CAACCATCTTCTCAGAGTTC+CGG 0.392756 8_1:-79702519 Msa1217430:CDS
TGTCAGCATTACATGAAAAC+AGG 0.398214 8_1:-79703961 Msa1217430:CDS
AGAAACTGGTTCGGATTTCT+GGG 0.399991 8_1:+79705969 None:intergenic
AAAGTGAACCTTAGTCCTAT+TGG 0.411454 8_1:-79703880 Msa1217430:CDS
TGAATTAACCACCTGGCAAA+CGG 0.411779 8_1:+79705186 None:intergenic
GGTGCTACTTGTGGTGGCAC+TGG 0.412279 8_1:+79702482 None:intergenic
GGTCCCTCAACCGGTCCTTC+AGG 0.414102 8_1:-79704033 Msa1217430:CDS
TCTTGGGAACAATAGCAAAC+AGG 0.414608 8_1:+79702028 None:intergenic
CAATCTTCTGGTCCCTCAGC+TGG 0.414974 8_1:-79704072 Msa1217430:CDS
CAATCCTCTGGTCCCTCAGC+TGG 0.414974 8_1:-79704102 Msa1217430:CDS
TCTACATGGCTCATTTGTCC+AGG 0.415319 8_1:-79704382 Msa1217430:CDS
GCACCGACGGAAGTCCATTC+CGG 0.418324 8_1:+79705775 None:intergenic
AAGAAACTAGAGTGAGAAAC+TGG 0.419904 8_1:+79705955 None:intergenic
AAAACGGGACAATGCAAGTT+TGG 0.420191 8_1:-79704582 Msa1217430:CDS
CCCACAGGATAGGGTGCAAC+TGG 0.421391 8_1:+79702717 None:intergenic
AGAGGTGAAACTTGGGGAAC+TGG 0.421536 8_1:+79704501 None:intergenic
ACCTGAAAGGCCTGATCAGC+AGG 0.421548 8_1:-79703986 Msa1217430:CDS
GCATTGGCAGAGGTGAAACT+TGG 0.425784 8_1:+79704493 None:intergenic
CGATTGACTGTCTTTACTCA+TGG 0.427704 8_1:-79702390 Msa1217430:three_prime_UTR
AGTCCGGGACATACCTGATA+AGG 0.428673 8_1:+79704303 None:intergenic
ATAGGACTAAGGTTCACTTT+TGG 0.429387 8_1:+79703883 None:intergenic
GACTTTGTCAACGGTTGTAC+CGG 0.430550 8_1:-79702559 Msa1217430:CDS
TATCCTGTGGGTTCCGCCAT+TGG 0.430848 8_1:-79702705 Msa1217430:CDS
CAATCTTCTGGTCCCTCAAC+CGG 0.435809 8_1:-79704042 Msa1217430:CDS
AGTTGGACAGCCCGTTTGCC+AGG 0.438645 8_1:-79705197 Msa1217430:intron
TCAAGCTTTCGTGTGAGATC+AGG 0.441319 8_1:-79701781 Msa1217430:three_prime_UTR
AAGCAGATGGACTGTAACTC+AGG 0.442386 8_1:+79702757 None:intergenic
GGGCGCAAAGGAAGGCCAAT+AGG 0.442531 8_1:+79703865 None:intergenic
GAATTAACCACCTGGCAAAC+GGG 0.443512 8_1:+79705187 None:intergenic
TGTATCTATTATTTGAGGAC+AGG 0.449948 8_1:-79705578 Msa1217430:CDS
CCCTCAAAACAGAGAATGAA+TGG 0.451293 8_1:+79705909 None:intergenic
GTGTTCCTATTATGTGAAAA+CGG 0.451501 8_1:-79704598 Msa1217430:CDS
AATAAATTTAAGTACCCAAC+AGG 0.452454 8_1:+79701892 None:intergenic
TGGGCATCTGATTGAGAAAC+CGG 0.455710 8_1:+79702540 None:intergenic
GGGTATGGTGGATTGGTTGG+TGG 0.457920 8_1:-79705638 Msa1217430:CDS
AGCACATCGACTGCTTCAGC+TGG 0.458965 8_1:-79702585 Msa1217430:CDS
CCTGTGTCGCTAAATTGTTA+TGG 0.464227 8_1:-79704769 Msa1217430:CDS
CTCCTGATAACTTCTCTTCA+CGG 0.464631 8_1:+79701991 None:intergenic
GCGGTTATGGTTCTAGGTGT+CGG 0.465761 8_1:-79705550 Msa1217430:CDS
GTGGATGGGCATGTGCATAA+TGG 0.466074 8_1:+79702168 None:intergenic
TGTTGCAGGGTATGGTGGAT+TGG 0.467100 8_1:-79705645 Msa1217430:intron
TATGGTGGATTGGTTGGTGG+TGG 0.468504 8_1:-79705635 Msa1217430:CDS
CACCCGCAGGCTGTGGATGA+TGG 0.471640 8_1:+79704544 None:intergenic
ATTTGGCCACCCGCAGGCTG+TGG 0.472332 8_1:+79704537 None:intergenic
CGTACCTTTGTTCCATTGTA+CGG 0.473375 8_1:+79705842 None:intergenic
TTGGAGCTGCTAGGATTGCC+GGG 0.474132 8_1:-79705234 Msa1217430:CDS
GGTAAACCTTTCGATATCTT+GGG 0.476022 8_1:+79702012 None:intergenic
CAGCTGAGGGACCAGAAGAT+TGG 0.481828 8_1:+79704073 None:intergenic
ACACTCAACGGAGTACTAGA+AGG 0.482108 8_1:+79704192 None:intergenic
AGTAAAATGCTTGACCTGTT+GGG 0.482265 8_1:-79701906 Msa1217430:three_prime_UTR
GGTCCTTCACAACAACAATA+TGG 0.484846 8_1:-79704429 Msa1217430:CDS
AACTCGGATGATGAGGATGA+TGG 0.484942 8_1:+79702672 None:intergenic
TATTGGCCTTCCTTTGCGCC+CGG 0.486134 8_1:-79703863 Msa1217430:intron
TGTTCCTATTATGTGAAAAC+GGG 0.487218 8_1:-79704597 Msa1217430:CDS
TTGAGGCCTGAACTTGCATC+AGG 0.491757 8_1:-79702651 Msa1217430:CDS
GGTCCAGAATAGACGGTTGT+TGG 0.493231 8_1:+79704129 None:intergenic
ACATTACCATTGGCCCATAA+GGG 0.494713 8_1:+79704358 None:intergenic
GTGAATGTTGCAGGGTATGG+TGG 0.494891 8_1:-79705650 Msa1217430:intron
ACTGGGAGTTGCTAAAGAAC+CGG 0.495795 8_1:+79702500 None:intergenic
AGCTGGCTTGACTTTGTCAA+CGG 0.496678 8_1:-79702568 Msa1217430:CDS
TGAACACAAAGACAATTGAT+TGG 0.497325 8_1:+79702308 None:intergenic
TAGATACAATCAGCTTCATC+AGG 0.499288 8_1:+79705593 None:intergenic
CCTTCGTTTCGTCCGTACAA+TGG 0.504041 8_1:-79705854 Msa1217430:exon
CTACCTGAAGGACCGGTTGA+GGG 0.505161 8_1:+79704030 None:intergenic
TCTGGACCTTACCAATCCTC+TGG 0.505652 8_1:-79704114 Msa1217430:CDS
ATAGGTGAAGGTACCGGCAT+TGG 0.508949 8_1:+79704477 None:intergenic
GGAAGTACAGGACTTGCTGC+TGG 0.511452 8_1:+79704213 None:intergenic
GATAAAATGGAGTGATAATG+AGG 0.513137 8_1:+79702422 None:intergenic
CTGGTGATGGTGCTATCATT+TGG 0.515476 8_1:+79704520 None:intergenic
ATATCATCATCCGCCGGACA+TGG 0.516601 8_1:-79703911 Msa1217430:CDS
GCCAGTTGCACCCTATCCTG+TGG 0.516851 8_1:-79702718 Msa1217430:CDS
GAACCGGAACTCTGAGAAGA+TGG 0.517115 8_1:+79702516 None:intergenic
TCTAGTACTCCGTTGAGTGT+TGG 0.517479 8_1:-79704189 Msa1217430:CDS
CGGAACTCTGAGAAGATGGT+TGG 0.517807 8_1:+79702520 None:intergenic
AACAGAGCAGAGAGAAGAGA+AGG 0.518824 8_1:-79706020 Msa1217430:five_prime_UTR
TTCCATCATCCACAGCCTGC+GGG 0.519032 8_1:-79704546 Msa1217430:CDS
GCTATCATTTGGCCACCCGC+AGG 0.521595 8_1:+79704531 None:intergenic
ACTCTGATCCGTCGCCGGAA+TGG 0.523998 8_1:-79705789 Msa1217430:CDS
CAGCTGAGGGACCAGAGGAT+TGG 0.524806 8_1:+79704103 None:intergenic
CCATTGGCCCATAAGGGCCC+TGG 0.526364 8_1:+79704364 None:intergenic
GAAGGTACCGGCATTGGCAG+AGG 0.526800 8_1:+79704483 None:intergenic
CTACATGGCTCATTTGTCCA+GGG 0.527744 8_1:-79704381 Msa1217430:CDS
CTGCAGTACTATGCGAGGAC+GGG 0.528562 8_1:-79704856 Msa1217430:intron
GTGCTACTTGTGGTGGCACT+GGG 0.532061 8_1:+79702483 None:intergenic
ACTCGGATGATGAGGATGAT+GGG 0.532572 8_1:+79702673 None:intergenic
GAATAGACGGTTGTTGGTGA+AGG 0.537371 8_1:+79704135 None:intergenic
CATTGGCAGAGGTGAAACTT+GGG 0.537765 8_1:+79704494 None:intergenic
CAAGTATCACCATCCTAGAC+AGG 0.538523 8_1:-79704809 Msa1217430:CDS
GTCCGGGACATACCTGATAA+GGG 0.540447 8_1:+79704304 None:intergenic
AATGGCGGAACCCACAGGAT+AGG 0.542826 8_1:+79702707 None:intergenic
TGCAACTGGCATATCAGAAA+GGG 0.543825 8_1:+79702731 None:intergenic
GGAACTCTGAGAAGATGGTT+GGG 0.544097 8_1:+79702521 None:intergenic
ATTGCACTCTGATCCGTCGC+CGG 0.545199 8_1:-79705794 Msa1217430:CDS
GCGAGGCCACCTCTTCTACA+TGG 0.546491 8_1:-79704396 Msa1217430:CDS
AACTCGTTCTGGATATTCCC+CGG 0.548050 8_1:+79705216 None:intergenic
GTACCAATGGCGGAACCCAC+AGG 0.549531 8_1:+79702702 None:intergenic
CATTCACATTGCTTAGCTTG+AGG 0.554771 8_1:+79702449 None:intergenic
TGCAAGTTTGATCATCCTAC+GGG 0.556067 8_1:-79702783 Msa1217430:CDS
ATATTGTTGTTGTGAAGGAC+CGG 0.556322 8_1:+79704431 None:intergenic
CCAGTTGCACCCTATCCTGT+GGG 0.556861 8_1:-79702717 Msa1217430:CDS
GTGCAACTGGCATATCAGAA+AGG 0.557979 8_1:+79702730 None:intergenic
ACTACCTGAAGGACCGGTTG+AGG 0.558770 8_1:+79704029 None:intergenic
ACTAGAGTGAGAAACTGGTT+CGG 0.558999 8_1:+79705960 None:intergenic
AAGGAAGGCCAATAGGACTA+AGG 0.560421 8_1:+79703872 None:intergenic
GAAACTTGGGGAACTGGTGA+TGG 0.560745 8_1:+79704507 None:intergenic
TTGATTGGTGCAATGACTGT+TGG 0.560870 8_1:+79702323 None:intergenic
TTTAGGTTATTGGAGCTGCT+AGG 0.562437 8_1:-79705243 Msa1217430:intron
CTTGGGAACAATAGCAAACA+GGG 0.563429 8_1:+79702029 None:intergenic
ACGGAAGTCCATTCCGGCGA+CGG 0.563671 8_1:+79705781 None:intergenic
GAGGGACCAGAAGATTGATA+AGG 0.567065 8_1:+79704048 None:intergenic
GAGACGACCCATCGTTAGCT+CGG 0.567725 8_1:+79705818 None:intergenic
AGTTTCACCTCTGCCAATGC+CGG 0.567846 8_1:-79704490 Msa1217430:CDS
ATTGTTCCCAAGATATCGAA+AGG 0.568206 8_1:-79702018 Msa1217430:three_prime_UTR
TTCCTGCCGCCTGTCTAGGA+TGG 0.568534 8_1:+79704800 None:intergenic
ACTTCCGTCGGTGCTGATGA+AGG 0.569648 8_1:-79705766 Msa1217430:intron
TTGACTGTCTTTACTCATGG+AGG 0.571021 8_1:-79702387 Msa1217430:three_prime_UTR
GCTGCAGTACTATGCGAGGA+CGG 0.572531 8_1:-79704857 Msa1217430:intron
ATGACTGTTGGACCTGAACT+GGG 0.574035 8_1:+79702335 None:intergenic
AAGTAAAATGCTTGACCTGT+TGG 0.574419 8_1:-79701907 Msa1217430:three_prime_UTR
AAAGCAAGTTGCGACTGTAT+GGG 0.574997 8_1:+79702218 None:intergenic
TTTATTCAAGATCAAAGAGA+TGG 0.575418 8_1:+79702269 None:intergenic
TGACTGTCTTTACTCATGGA+GGG 0.575436 8_1:-79702386 Msa1217430:three_prime_UTR
GTGCAAGTTTGATCATCCTA+CGG 0.575614 8_1:-79702784 Msa1217430:CDS
ACACCATATTGTTGTTGTGA+AGG 0.575855 8_1:+79704426 None:intergenic
CAAACTGTACAGCCTCCGTC+CGG 0.577193 8_1:-79704450 Msa1217430:CDS
CGCTGGGTATAATGAGTGCA+AGG 0.577555 8_1:+79702831 None:intergenic
CCAGGGCCCTTATGGGCCAA+TGG 0.578875 8_1:-79704364 Msa1217430:CDS
ATAATCATTACCGGGCGCAA+AGG 0.584792 8_1:+79703853 None:intergenic
GGAGTACTAGAAGGAAGTAC+AGG 0.587929 8_1:+79704201 None:intergenic
CCATTGTACGGACGAAACGA+AGG 0.589644 8_1:+79705854 None:intergenic
TATCATCATCCGCCGGACAT+GGG 0.589789 8_1:-79703910 Msa1217430:CDS
CTCGGATGATGAGGATGATG+GGG 0.590885 8_1:+79702674 None:intergenic
CTGACTACTACCTGAAGGAC+CGG 0.592024 8_1:+79704023 None:intergenic
CCATAACAATTTAGCGACAC+AGG 0.592373 8_1:+79704769 None:intergenic
AGGCCTCAACTCGGATGATG+AGG 0.592496 8_1:+79702665 None:intergenic
TTTACCGCGCCACGGTCACG+TGG 0.593039 8_1:+79705518 None:intergenic
TGCAAGTTCAGGCCTCAACT+CGG 0.595724 8_1:+79702656 None:intergenic
TCCTTCAGGTAGTAGTCAGA+AGG 0.595822 8_1:-79704019 Msa1217430:CDS
CTTTGATCTTGAATAAACCA+TGG 0.599624 8_1:-79702263 Msa1217430:three_prime_UTR
AGATTGATAAGGACCAGCTG+AGG 0.601283 8_1:+79704059 None:intergenic
TCAGAAAGGGAAGAAGCAGA+TGG 0.603283 8_1:+79702744 None:intergenic
CATCCTCATCATCCGAGTTG+AGG 0.603884 8_1:-79702668 Msa1217430:CDS
GATGACATTCTGGATGAAGC+AGG 0.604175 8_1:+79702615 None:intergenic
AGATTGGTAAGGACCAGCTG+AGG 0.604660 8_1:+79704089 None:intergenic
TGATGGGGCAAGAGTACCAA+TGG 0.604718 8_1:+79702689 None:intergenic
ATTCCATCATCCACAGCCTG+CGG 0.605023 8_1:-79704547 Msa1217430:CDS
GGGGAATATCCAGAACGAGT+TGG 0.606813 8_1:-79705214 Msa1217430:CDS
TTTGGTGCACCCATGTCCGG+CGG 0.607060 8_1:+79703901 None:intergenic
TGATAAATAGGTGAAGGTAC+CGG 0.608014 8_1:+79704471 None:intergenic
AAAGTACAAACCACTCGCAA+CGG 0.608625 8_1:+79704742 None:intergenic
AAACTTACAAAATCCACGCT+GGG 0.608759 8_1:+79702815 None:intergenic
TCAGCTTCATCAGGTCGTTG+TGG 0.608955 8_1:+79705602 None:intergenic
GAGGGACCAGAGGATTGGTA+AGG 0.609630 8_1:+79704108 None:intergenic
TGCGTCGAACCAACACTCAA+CGG 0.610522 8_1:+79704180 None:intergenic
TTGGTAAGGTCCAGAATAGA+CGG 0.611928 8_1:+79704122 None:intergenic
AGGTACGGCCGAGCTAACGA+TGG 0.613122 8_1:-79705826 Msa1217430:CDS
ACAAATGAGCCATGTAGAAG+AGG 0.616318 8_1:+79704387 None:intergenic
GGTACGGCCGAGCTAACGAT+GGG 0.619629 8_1:-79705825 Msa1217430:CDS
GAGGGACCAGAAGATTGGTA+AGG 0.620595 8_1:+79704078 None:intergenic
AGCAGATGGACTGTAACTCA+GGG 0.621538 8_1:+79702758 None:intergenic
CATCATCCACAGCCTGCGGG+TGG 0.623790 8_1:-79704543 Msa1217430:CDS
CAAACTTACAAAATCCACGC+TGG 0.625616 8_1:+79702814 None:intergenic
AGTACCTTCATCAGCACCGA+CGG 0.628033 8_1:+79705762 None:intergenic
CCATCCACGTGACCGTGGCG+CGG 0.628156 8_1:-79705522 Msa1217430:intron
AATGAGCCATGTAGAAGAGG+TGG 0.628441 8_1:+79704390 None:intergenic
TTATGGATATCCGTTGCGAG+TGG 0.629078 8_1:-79704752 Msa1217430:intron
ACAGAGCAGAGAGAAGAGAA+GGG 0.629461 8_1:-79706019 Msa1217430:five_prime_UTR
AGGAACACTCATTACCTGAA+AGG 0.629964 8_1:-79703999 Msa1217430:CDS
TCCTTCTGACTACTACCTGA+AGG 0.631642 8_1:+79704018 None:intergenic
GATTGATAAGGACCAGCTGA+GGG 0.633302 8_1:+79704060 None:intergenic
ACAGTTTGATAAATAGGTGA+AGG 0.633435 8_1:+79704465 None:intergenic
CATTGTACGGACGAAACGAA+GGG 0.633887 8_1:+79705855 None:intergenic
TGGAGCTGCTAGGATTGCCG+GGG 0.637613 8_1:-79705233 Msa1217430:CDS
GTGAGAGACGGTGCTACTTG+TGG 0.638791 8_1:+79702473 None:intergenic
TTTAACCATCCACGTGACCG+TGG 0.642316 8_1:-79705527 Msa1217430:CDS
GAAACTGGTTCGGATTTCTG+GGG 0.642440 8_1:+79705970 None:intergenic
GTCAGCATTACATGAAAACA+GGG 0.642817 8_1:-79703960 Msa1217430:CDS
GATTGGTAAGGACCAGCTGA+GGG 0.643343 8_1:+79704090 None:intergenic
TTAGCTTGAGGTGTGAGAGA+CGG 0.646603 8_1:+79702461 None:intergenic
AGGACCAGCTGAGGGACCAG+AGG 0.646769 8_1:+79704098 None:intergenic
TGCACTCATTATACCCAGCG+TGG 0.650258 8_1:-79702828 Msa1217430:CDS
TGTTGTTGTGAAGGACCGGA+CGG 0.652804 8_1:+79704435 None:intergenic
ATGTAGATATCATCATCCGC+CGG 0.657903 8_1:-79703917 Msa1217430:CDS
AATATGGTGTACTTGTTGCG+AGG 0.663439 8_1:-79704413 Msa1217430:CDS
TCATGCTGCAGTACTATGCG+AGG 0.670087 8_1:-79704861 Msa1217430:intron
CGTACAATGGAACAAAGGTA+CGG 0.672974 8_1:-79705841 Msa1217430:exon
ATTGGCAGAGGTGAAACTTG+GGG 0.673579 8_1:+79704495 None:intergenic
ACTTGCATCAGGATCCAGCA+AGG 0.675326 8_1:-79702640 Msa1217430:CDS
TCGTCCGTACAATGGAACAA+AGG 0.678724 8_1:-79705846 Msa1217430:exon
CTGTAACTCAGGGATCCCGT+AGG 0.679795 8_1:+79702768 None:intergenic
GTATCACCATCCTAGACAGG+CGG 0.680328 8_1:-79704806 Msa1217430:CDS
AGAGACGGTGCTACTTGTGG+TGG 0.702854 8_1:+79702476 None:intergenic
TGTTGTGAAGGACCGGACGG+AGG 0.705461 8_1:+79704438 None:intergenic
TGGGGCAAGAGTACCAATGG+CGG 0.727761 8_1:+79702692 None:intergenic
GTTATCAGGAGACTACAATG+AGG 0.728131 8_1:-79701979 Msa1217430:three_prime_UTR
TCAGCATTACATGAAAACAG+GGG 0.793025 8_1:-79703959 Msa1217430:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTATTTTTTATTTTTTA+AGG - chr8_1:79702318-79702337 Msa1217430:three_prime_UTR 0.0%
!!! TTATAATGTTTTTTTACTAA+CGG - chr8_1:79702429-79702448 Msa1217430:three_prime_UTR 10.0%
!!! ATGTTTTTTTTTTTTTTTTG+GGG + chr8_1:79704374-79704393 None:intergenic 10.0%
!!! CATGTTTTTTTTTTTTTTTT+GGG + chr8_1:79704375-79704394 None:intergenic 10.0%
!!! ACATGTTTTTTTTTTTTTTT+TGG + chr8_1:79704376-79704395 None:intergenic 10.0%
!!! ATGTTTTTTTTTTTTTTTGA+GGG - chr8_1:79704525-79704544 Msa1217430:CDS 10.0%
!! GTTTAATCAAATTAAAATTT+GGG + chr8_1:79704675-79704694 None:intergenic 10.0%
!!! TATAATGTTTTTTTACTAAC+GGG - chr8_1:79702430-79702449 Msa1217430:three_prime_UTR 15.0%
!!! TGTTTTTTTTTTTTTTTTGG+GGG + chr8_1:79704373-79704392 None:intergenic 15.0%
!!! GATGTTTTTTTTTTTTTTTG+AGG - chr8_1:79704524-79704543 Msa1217430:CDS 15.0%
!! CGTTTAATCAAATTAAAATT+TGG + chr8_1:79704676-79704695 None:intergenic 15.0%
!!! TTTTTAAGGTTTTTGTTTTG+AGG - chr8_1:79702339-79702358 Msa1217430:three_prime_UTR 20.0%
!!! TTTTATTCATTGAATTCTGT+CGG - chr8_1:79702465-79702484 Msa1217430:CDS 20.0%
!! TATAATCAATACAAAAGGAA+AGG + chr8_1:79702922-79702941 None:intergenic 20.0%
!! GCAAATATAATCAATACAAA+AGG + chr8_1:79702927-79702946 None:intergenic 20.0%
!!! TTTTATGAAAAATCGTAACA+GGG - chr8_1:79703183-79703202 Msa1217430:intron 20.0%
!! GCTATTATTATTATCATCAA+AGG + chr8_1:79704080-79704099 None:intergenic 20.0%
!!! TTTTTTTTTTTTTTTTGGGG+GGG + chr8_1:79704371-79704390 None:intergenic 20.0%
!!! GTTTTTTTTTTTTTTTTGGG+GGG + chr8_1:79704372-79704391 None:intergenic 20.0%
!! ATATTTGAACTTAAATCTCT+AGG - chr8_1:79704464-79704483 Msa1217430:CDS 20.0%
!! ACTATTGCATTAAAATACAT+CGG + chr8_1:79704571-79704590 None:intergenic 20.0%
!! AAAGATCAATAAAGACAAAT+GGG + chr8_1:79704762-79704781 None:intergenic 20.0%
!! AAAAGATCAATAAAGACAAA+TGG + chr8_1:79704763-79704782 None:intergenic 20.0%
!!! TTTGTCTTTATTGATCTTTT+TGG - chr8_1:79704763-79704782 Msa1217430:CDS 20.0%
!!! TTGTTGTATGTTTTATAATC+AGG - chr8_1:79704951-79704970 Msa1217430:intron 20.0%
!!! TGTTGTATGTTTTATAATCA+GGG - chr8_1:79704952-79704971 Msa1217430:intron 20.0%
!! ATCGAAAAATTGAGATAAAA+TGG + chr8_1:79705407-79705426 None:intergenic 20.0%
!!! ATCCTTCAATCTTTTTTTTT+TGG - chr8_1:79705691-79705710 Msa1217430:intron 20.0%
!! TACCAAAAAAAAAAGATTGA+AGG + chr8_1:79705696-79705715 None:intergenic 20.0%
!!! TTATTATTTTTGATACACCA+TGG - chr8_1:79705874-79705893 Msa1217430:five_prime_UTR 20.0%
! CTGATTGTATCTATTATTTG+AGG - chr8_1:79702230-79702249 Msa1217430:three_prime_UTR 25.0%
! ATTCAGTTTATGCTCAATTA+TGG - chr8_1:79702645-79702664 Msa1217430:CDS 25.0%
! TTCAGTTTATGCTCAATTAT+GGG - chr8_1:79702646-79702665 Msa1217430:CDS 25.0%
!! CTTTTATGAAAAATCGTAAC+AGG - chr8_1:79703182-79703201 Msa1217430:intron 25.0%
! ACAAAGTTAAGAAGTCAATT+TGG + chr8_1:79704127-79704146 None:intergenic 25.0%
!! AATTGACTTCTTAACTTTGT+TGG - chr8_1:79704127-79704146 Msa1217430:CDS 25.0%
!!! TTTTTTTTTTTTTTTGGGGG+GGG + chr8_1:79704370-79704389 None:intergenic 25.0%
! AGTACTACAAAAATCTTCAA+CGG + chr8_1:79704490-79704509 None:intergenic 25.0%
! AATTACTTGAGCTTGAAAAA+TGG - chr8_1:79704622-79704641 Msa1217430:intron 25.0%
!! TCAAATTAAAATTTGGGACA+AGG + chr8_1:79704669-79704688 None:intergenic 25.0%
! CAAAATAATATGTGGTTTAG+TGG + chr8_1:79704734-79704753 None:intergenic 25.0%
! TTAATGCAATACTTTGTCTT+TGG - chr8_1:79704799-79704818 Msa1217430:CDS 25.0%
!! GTGTTCATATAATCTTTTTG+TGG - chr8_1:79705521-79705540 Msa1217430:intron 25.0%
! TTTATTCAAGATCAAAGAGA+TGG + chr8_1:79705547-79705566 None:intergenic 25.0%
!! GTTGCTAAAATTTTCAAAGT+TGG + chr8_1:79705576-79705595 None:intergenic 25.0%
! TTATTCCCAAATGCAAAAAA+GGG + chr8_1:79705742-79705761 None:intergenic 25.0%
! ATTATTCCCAAATGCAAAAA+AGG + chr8_1:79705743-79705762 None:intergenic 25.0%
! AATAAATTTAAGTACCCAAC+AGG + chr8_1:79705924-79705943 None:intergenic 25.0%
! GACAAGTAAACTGATAAAAA+GGG + chr8_1:79706014-79706033 None:intergenic 25.0%
! TGACAAGTAAACTGATAAAA+AGG + chr8_1:79706015-79706034 None:intergenic 25.0%
TGGAACAATCTGAAAAAGTT+TGG + chr8_1:79701932-79701951 None:intergenic 30.0%
! TTTCTTCGATTTGAGTGTAA+TGG - chr8_1:79702130-79702149 Msa1217430:three_prime_UTR 30.0%
TGTATCTATTATTTGAGGAC+AGG - chr8_1:79702235-79702254 Msa1217430:three_prime_UTR 30.0%
! GACATGGTGATTGAAATTTT+GGG - chr8_1:79702528-79702547 Msa1217430:CDS 30.0%
! ACATGGTGATTGAAATTTTG+GGG - chr8_1:79702529-79702548 Msa1217430:CDS 30.0%
!! TTTGTGTTTGTGATTGGTTT+AGG - chr8_1:79702553-79702572 Msa1217430:CDS 30.0%
!! TTGTGATTGGTTTAGGTTAT+TGG - chr8_1:79702560-79702579 Msa1217430:CDS 30.0%
!! CTGTTTTAAACCACTCAAAT+TGG - chr8_1:79702783-79702802 Msa1217430:CDS 30.0%
!!! TCAACATCGATGTTTTAACA+CGG + chr8_1:79702816-79702835 None:intergenic 30.0%
! ATTTGTTCCATGAGATTTTG+TGG - chr8_1:79703106-79703125 Msa1217430:intron 30.0%
GTGTTCCTATTATGTGAAAA+CGG - chr8_1:79703215-79703234 Msa1217430:intron 30.0%
TGTTCCTATTATGTGAAAAC+GGG - chr8_1:79703216-79703235 Msa1217430:intron 30.0%
ACAGTTTGATAAATAGGTGA+AGG + chr8_1:79703351-79703370 None:intergenic 30.0%
AAGCAATCAAAACAAAAGTC+CGG + chr8_1:79703529-79703548 None:intergenic 30.0%
AGTTGAGAGATAATCATTAC+CGG + chr8_1:79703972-79703991 None:intergenic 30.0%
CCAAAAAATATAGTACCAGA+GGG + chr8_1:79704054-79704073 None:intergenic 30.0%
TCCAAAAAATATAGTACCAG+AGG + chr8_1:79704055-79704074 None:intergenic 30.0%
ATTTATTATTCCTCGTATGC+AGG - chr8_1:79704157-79704176 Msa1217430:CDS 30.0%
!!! TTTTTTTTTTTTTTGGGGGG+GGG + chr8_1:79704369-79704388 None:intergenic 30.0%
GATTAAACGATTGTAGAAGT+AGG - chr8_1:79704687-79704706 Msa1217430:intron 30.0%
TTGGACTTCAGGTAAATAAT+AGG - chr8_1:79704818-79704837 Msa1217430:CDS 30.0%
! GATAAAATGGAGTGATAATG+AGG + chr8_1:79705394-79705413 None:intergenic 30.0%
TGAACACAAAGACAATTGAT+TGG + chr8_1:79705508-79705527 None:intergenic 30.0%
CTTTGATCTTGAATAAACCA+TGG - chr8_1:79705550-79705569 Msa1217430:CDS 30.0%
! AAAATTTTCAAAGTTGGCCA+TGG + chr8_1:79705570-79705589 None:intergenic 30.0%
CAAAAAATAGACATGTGGAT+GGG + chr8_1:79705662-79705681 None:intergenic 30.0%
ACAAAAAATAGACATGTGGA+TGG + chr8_1:79705663-79705682 None:intergenic 30.0%
AAGCACAAAAAATAGACATG+TGG + chr8_1:79705667-79705686 None:intergenic 30.0%
!!! CAAAACCCTTTTTTGCATTT+GGG - chr8_1:79705734-79705753 Msa1217430:intron 30.0%
AAGAAACTAGAGTGAGAAAC+TGG + chr8_1:79701861-79701880 None:intergenic 35.0%
! TTCATTCACACGCTTTTCAT+CGG - chr8_1:79701879-79701898 Msa1217430:three_prime_UTR 35.0%
! ACCATTCATTCTCTGTTTTG+AGG - chr8_1:79701903-79701922 Msa1217430:three_prime_UTR 35.0%
!! CCATTCATTCTCTGTTTTGA+GGG - chr8_1:79701904-79701923 Msa1217430:three_prime_UTR 35.0%
! AGTGATTTTGTGAATGTTGC+AGG - chr8_1:79702154-79702173 Msa1217430:three_prime_UTR 35.0%
! GTGATTTTGTGAATGTTGCA+GGG - chr8_1:79702155-79702174 Msa1217430:three_prime_UTR 35.0%
TAGATACAATCAGCTTCATC+AGG + chr8_1:79702223-79702242 None:intergenic 35.0%
! TATTTGAGGACAGGTTTTTG+CGG - chr8_1:79702244-79702263 Msa1217430:three_prime_UTR 35.0%
AATAAAAATTTACCGCGCCA+CGG + chr8_1:79702306-79702325 None:intergenic 35.0%
! GTTTTTGATGTGATTGTCTC+TGG - chr8_1:79702366-79702385 Msa1217430:three_prime_UTR 35.0%
CACTTAATTGTGTGTGATTG+AGG - chr8_1:79702495-79702514 Msa1217430:CDS 35.0%
! GGACATGGTGATTGAAATTT+TGG - chr8_1:79702527-79702546 Msa1217430:CDS 35.0%
CATAAACTGAATTAACCACC+TGG + chr8_1:79702637-79702656 None:intergenic 35.0%
GACGAATAACAGTGTCAATT+GGG + chr8_1:79702702-79702721 None:intergenic 35.0%
AGACGAATAACAGTGTCAAT+TGG + chr8_1:79702703-79702722 None:intergenic 35.0%
! ACTGTTATTCGTCTTTTGTG+TGG - chr8_1:79702709-79702728 Msa1217430:CDS 35.0%
GCATAAACCACAAAATCTCA+TGG + chr8_1:79703116-79703135 None:intergenic 35.0%
! TTGTCCCGTTTTCACATAAT+AGG + chr8_1:79703223-79703242 None:intergenic 35.0%
! TGATAAATAGGTGAAGGTAC+CGG + chr8_1:79703345-79703364 None:intergenic 35.0%
GGCTGTACAGTTTGATAAAT+AGG + chr8_1:79703357-79703376 None:intergenic 35.0%
! ATATTGTTGTTGTGAAGGAC+CGG + chr8_1:79703385-79703404 None:intergenic 35.0%
! ACACCATATTGTTGTTGTGA+AGG + chr8_1:79703390-79703409 None:intergenic 35.0%
AGCAATCAAAACAAAAGTCC+GGG + chr8_1:79703528-79703547 None:intergenic 35.0%
TGTCAGCATTACATGAAAAC+AGG - chr8_1:79703852-79703871 Msa1217430:intron 35.0%
GTCAGCATTACATGAAAACA+GGG - chr8_1:79703853-79703872 Msa1217430:intron 35.0%
TCAGCATTACATGAAAACAG+GGG - chr8_1:79703854-79703873 Msa1217430:intron 35.0%
AAAACAGGGGACTGTAAATT+TGG - chr8_1:79703867-79703886 Msa1217430:CDS 35.0%
! ATAGGACTAAGGTTCACTTT+TGG + chr8_1:79703933-79703952 None:intergenic 35.0%
AAAGTGAACCTTAGTCCTAT+TGG - chr8_1:79703933-79703952 Msa1217430:CDS 35.0%
GTTGAGAGATAATCATTACC+GGG + chr8_1:79703971-79703990 None:intergenic 35.0%
!! ATCCACTTTGGTTCTTGAAT+TGG - chr8_1:79703995-79704014 Msa1217430:CDS 35.0%
AACCAATTCAAGAACCAAAG+TGG + chr8_1:79704000-79704019 None:intergenic 35.0%
AATATTCTCTGATTTCCCTC+TGG - chr8_1:79704036-79704055 Msa1217430:CDS 35.0%
!!! CCCTCTGGTACTATATTTTT+TGG - chr8_1:79704051-79704070 Msa1217430:CDS 35.0%
CATTGAAAACAATTCACAGC+TGG - chr8_1:79704226-79704245 Msa1217430:intron 35.0%
GAGATCAGACAGACAAAAAA+AGG + chr8_1:79704254-79704273 None:intergenic 35.0%
! TTTTTGTCTGTCTGATCTCT+AGG - chr8_1:79704255-79704274 Msa1217430:intron 35.0%
!!! TTTTTTTTTTTTTGGGGGGG+GGG + chr8_1:79704368-79704387 None:intergenic 35.0%
GAATGTGTTGAGTAGTATGT+TGG - chr8_1:79704426-79704445 Msa1217430:CDS 35.0%
TCAAGCTCAAGTAATTATGC+AGG + chr8_1:79704618-79704637 None:intergenic 35.0%
ATACTTTGTCTTTGGACTTC+AGG - chr8_1:79704807-79704826 Msa1217430:CDS 35.0%
AAACTTACAAAATCCACGCT+GGG + chr8_1:79705001-79705020 None:intergenic 35.0%
!!! CTTTTAAGTTATCCCAGTTC+AGG - chr8_1:79705466-79705485 Msa1217430:intron 35.0%
! CCAAATGCAAAAAAGGGTTT+TGG + chr8_1:79705736-79705755 None:intergenic 35.0%
!!! CCAAAACCCTTTTTTGCATT+TGG - chr8_1:79705733-79705752 Msa1217430:intron 35.0%
ATTGTTCCCAAGATATCGAA+AGG - chr8_1:79705795-79705814 Msa1217430:CDS 35.0%
GGTAAACCTTTCGATATCTT+GGG + chr8_1:79705804-79705823 None:intergenic 35.0%
! TTTTACTTGTCACAACACCA+TGG + chr8_1:79705894-79705913 None:intergenic 35.0%
AAGTAAAATGCTTGACCTGT+TGG - chr8_1:79705906-79705925 Msa1217430:five_prime_UTR 35.0%
AGTAAAATGCTTGACCTGTT+GGG - chr8_1:79705907-79705926 Msa1217430:five_prime_UTR 35.0%
!! AGAAACTGGTTCGGATTTCT+GGG + chr8_1:79701847-79701866 None:intergenic 40.0%
ACTAGAGTGAGAAACTGGTT+CGG + chr8_1:79701856-79701875 None:intergenic 40.0%
CCCTCAAAACAGAGAATGAA+TGG + chr8_1:79701907-79701926 None:intergenic 40.0%
GACGAAACGAAGGGTAAAAA+TGG + chr8_1:79701952-79701971 None:intergenic 40.0%
CGTACCTTTGTTCCATTGTA+CGG + chr8_1:79701974-79701993 None:intergenic 40.0%
CGTACAATGGAACAAAGGTA+CGG - chr8_1:79701972-79701991 Msa1217430:three_prime_UTR 40.0%
TTTGTGAATGTTGCAGGGTA+TGG - chr8_1:79702160-79702179 Msa1217430:three_prime_UTR 40.0%
! GTTTTTGCGGTTATGGTTCT+AGG - chr8_1:79702257-79702276 Msa1217430:three_prime_UTR 40.0%
TGGGGATTTGTGTTTGTGAT+TGG - chr8_1:79702547-79702566 Msa1217430:CDS 40.0%
! TTTAGGTTATTGGAGCTGCT+AGG - chr8_1:79702570-79702589 Msa1217430:CDS 40.0%
TGAATTAACCACCTGGCAAA+CGG + chr8_1:79702630-79702649 None:intergenic 40.0%
CCATAACAATTTAGCGACAC+AGG + chr8_1:79703047-79703066 None:intergenic 40.0%
! CCTGTGTCGCTAAATTGTTA+TGG - chr8_1:79703044-79703063 Msa1217430:intron 40.0%
AAAGTACAAACCACTCGCAA+CGG + chr8_1:79703074-79703093 None:intergenic 40.0%
AAAACGGGACAATGCAAGTT+TGG - chr8_1:79703231-79703250 Msa1217430:intron 40.0%
GGTCCTTCACAACAACAATA+TGG - chr8_1:79703384-79703403 Msa1217430:intron 40.0%
! AATATGGTGTACTTGTTGCG+AGG - chr8_1:79703400-79703419 Msa1217430:intron 40.0%
ACAAATGAGCCATGTAGAAG+AGG + chr8_1:79703429-79703448 None:intergenic 40.0%
ACATTACCATTGGCCCATAA+GGG + chr8_1:79703458-79703477 None:intergenic 40.0%
!!! AGCTTTTGAGTTCTAGATGC+AGG - chr8_1:79703575-79703594 Msa1217430:intron 40.0%
TTGGTAAGGTCCAGAATAGA+CGG + chr8_1:79703694-79703713 None:intergenic 40.0%
AGGAACACTCATTACCTGAA+AGG - chr8_1:79703814-79703833 Msa1217430:intron 40.0%
ATGTAGATATCATCATCCGC+CGG - chr8_1:79703896-79703915 Msa1217430:CDS 40.0%
CTCTCAACTCATATCCACTT+TGG - chr8_1:79703983-79704002 Msa1217430:CDS 40.0%
GAAATTGAATCCTGCATACG+AGG + chr8_1:79704170-79704189 None:intergenic 40.0%
AGGAATATGCAAGAGTAGTG+AGG - chr8_1:79704309-79704328 Msa1217430:intron 40.0%
AGAGTAGTGAGGAGTTTGTA+TGG - chr8_1:79704320-79704339 Msa1217430:CDS 40.0%
GAGTAGTGAGGAGTTTGTAT+GGG - chr8_1:79704321-79704340 Msa1217430:CDS 40.0%
!!! TTTTTTTTTTTTGGGGGGGG+GGG + chr8_1:79704367-79704386 None:intergenic 40.0%
TGTGTTGAGTAGTATGTTGG+AGG - chr8_1:79704429-79704448 Msa1217430:CDS 40.0%
! ATTTGGGACAAGGTGCAATA+AGG + chr8_1:79704659-79704678 None:intergenic 40.0%
GGGCACGTCAAAATAATATG+TGG + chr8_1:79704742-79704761 None:intergenic 40.0%
CAAACTTACAAAATCCACGC+TGG + chr8_1:79705002-79705021 None:intergenic 40.0%
! CAGCGTGGATTTTGTAAGTT+TGG - chr8_1:79705000-79705019 Msa1217430:intron 40.0%
GTGCAAGTTTGATCATCCTA+CGG - chr8_1:79705029-79705048 Msa1217430:intron 40.0%
TGCAAGTTTGATCATCCTAC+GGG - chr8_1:79705030-79705049 Msa1217430:intron 40.0%
TGCAACTGGCATATCAGAAA+GGG + chr8_1:79705085-79705104 None:intergenic 40.0%
!! GCTCATTGATGATGACATTC+TGG + chr8_1:79705211-79705230 None:intergenic 40.0%
! CATTCACATTGCTTAGCTTG+AGG + chr8_1:79705367-79705386 None:intergenic 40.0%
CGATTGACTGTCTTTACTCA+TGG - chr8_1:79705423-79705442 Msa1217430:intron 40.0%
TTGACTGTCTTTACTCATGG+AGG - chr8_1:79705426-79705445 Msa1217430:intron 40.0%
TGACTGTCTTTACTCATGGA+GGG - chr8_1:79705427-79705446 Msa1217430:intron 40.0%
TTGATTGGTGCAATGACTGT+TGG + chr8_1:79705493-79705512 None:intergenic 40.0%
AAAGCAAGTTGCGACTGTAT+GGG + chr8_1:79705598-79705617 None:intergenic 40.0%
AAAAGCAAGTTGCGACTGTA+TGG + chr8_1:79705599-79705618 None:intergenic 40.0%
CTTGGGAACAATAGCAAACA+GGG + chr8_1:79705787-79705806 None:intergenic 40.0%
TCTTGGGAACAATAGCAAAC+AGG + chr8_1:79705788-79705807 None:intergenic 40.0%
CGGTAAACCTTTCGATATCT+TGG + chr8_1:79705805-79705824 None:intergenic 40.0%
TACCGTGAAGAGAAGTTATC+AGG - chr8_1:79705820-79705839 Msa1217430:CDS 40.0%
CTCCTGATAACTTCTCTTCA+CGG + chr8_1:79705825-79705844 None:intergenic 40.0%
GTTATCAGGAGACTACAATG+AGG - chr8_1:79705834-79705853 Msa1217430:CDS 40.0%
! TGTGAGATCAGGTGATTTTC+TGG - chr8_1:79706043-79706062 Msa1217430:five_prime_UTR 40.0%
AACAGAGCAGAGAGAAGAGA+AGG - chr8_1:79701793-79701812 Msa1217430:three_prime_UTR 45.0%
ACAGAGCAGAGAGAAGAGAA+GGG - chr8_1:79701794-79701813 Msa1217430:three_prime_UTR 45.0%
!! GAAACTGGTTCGGATTTCTG+GGG + chr8_1:79701846-79701865 None:intergenic 45.0%
!! GAGAAACTGGTTCGGATTTC+TGG + chr8_1:79701848-79701867 None:intergenic 45.0%
CATTGTACGGACGAAACGAA+GGG + chr8_1:79701961-79701980 None:intergenic 45.0%
TCGTCCGTACAATGGAACAA+AGG - chr8_1:79701967-79701986 Msa1217430:three_prime_UTR 45.0%
! AGGACAGGTTTTTGCGGTTA+TGG - chr8_1:79702250-79702269 Msa1217430:three_prime_UTR 45.0%
GTGTGATTGAGGATGTGCAT+TGG - chr8_1:79702506-79702525 Msa1217430:CDS 45.0%
TTGAGGATGTGCATTGGACA+TGG - chr8_1:79702512-79702531 Msa1217430:CDS 45.0%
! AACTCGTTCTGGATATTCCC+CGG + chr8_1:79702600-79702619 None:intergenic 45.0%
GAATTAACCACCTGGCAAAC+GGG + chr8_1:79702629-79702648 None:intergenic 45.0%
CGGTTTCGTTCCAATTTGAG+TGG + chr8_1:79702796-79702815 None:intergenic 45.0%
! TCTAGGATGGTGATACTTGC+AGG + chr8_1:79703003-79703022 None:intergenic 45.0%
CAAGTATCACCATCCTAGAC+AGG - chr8_1:79703004-79703023 Msa1217430:intron 45.0%
TTATGGATATCCGTTGCGAG+TGG - chr8_1:79703061-79703080 Msa1217430:intron 45.0%
!! CTGGTGATGGTGCTATCATT+TGG + chr8_1:79703296-79703315 None:intergenic 45.0%
ATTGGCAGAGGTGAAACTTG+GGG + chr8_1:79703321-79703340 None:intergenic 45.0%
CATTGGCAGAGGTGAAACTT+GGG + chr8_1:79703322-79703341 None:intergenic 45.0%
AATGAGCCATGTAGAAGAGG+TGG + chr8_1:79703426-79703445 None:intergenic 45.0%
TCTACATGGCTCATTTGTCC+AGG - chr8_1:79703431-79703450 Msa1217430:intron 45.0%
CTACATGGCTCATTTGTCCA+GGG - chr8_1:79703432-79703451 Msa1217430:intron 45.0%
GACATTACCATTGGCCCATA+AGG + chr8_1:79703459-79703478 None:intergenic 45.0%
! GGAGTACTAGAAGGAAGTAC+AGG + chr8_1:79703615-79703634 None:intergenic 45.0%
! ACACTCAACGGAGTACTAGA+AGG + chr8_1:79703624-79703643 None:intergenic 45.0%
TCTAGTACTCCGTTGAGTGT+TGG - chr8_1:79703624-79703643 Msa1217430:intron 45.0%
! TTGGTTCGACGCAGCTTTAT+GGG - chr8_1:79703643-79703662 Msa1217430:intron 45.0%
! GAATAGACGGTTGTTGGTGA+AGG + chr8_1:79703681-79703700 None:intergenic 45.0%
TCACCAACAACCGTCTATTC+TGG - chr8_1:79703681-79703700 Msa1217430:intron 45.0%
GATTGATAAGGACCAGCTGA+GGG + chr8_1:79703756-79703775 None:intergenic 45.0%
AGATTGATAAGGACCAGCTG+AGG + chr8_1:79703757-79703776 None:intergenic 45.0%
GCTGGTCCTTATCAATCTTC+TGG - chr8_1:79703759-79703778 Msa1217430:intron 45.0%
GAGGGACCAGAAGATTGATA+AGG + chr8_1:79703768-79703787 None:intergenic 45.0%
TCCTTCAGGTAGTAGTCAGA+AGG - chr8_1:79703794-79703813 Msa1217430:intron 45.0%
TCCTTCTGACTACTACCTGA+AGG + chr8_1:79703798-79703817 None:intergenic 45.0%
AAGGAAGGCCAATAGGACTA+AGG + chr8_1:79703944-79703963 None:intergenic 45.0%
ATAATCATTACCGGGCGCAA+AGG + chr8_1:79703963-79703982 None:intergenic 45.0%
TAGCTAGCTAGCTAGCTGTA+AGG - chr8_1:79704096-79704115 Msa1217430:CDS 45.0%
CTAGGACTCAGTTGAATGAG+TGG - chr8_1:79704273-79704292 Msa1217430:intron 45.0%
TGAGTGGTGTGTGCTTTACT+AGG - chr8_1:79704289-79704308 Msa1217430:intron 45.0%
!!! TTTTTTTTTTTGGGGGGGGG+GGG + chr8_1:79704366-79704385 None:intergenic 45.0%
!! AGCAGATGGACTGTAACTCA+GGG + chr8_1:79705058-79705077 None:intergenic 45.0%
!! AAGCAGATGGACTGTAACTC+AGG + chr8_1:79705059-79705078 None:intergenic 45.0%
TCAGAAAGGGAAGAAGCAGA+TGG + chr8_1:79705072-79705091 None:intergenic 45.0%
GTGCAACTGGCATATCAGAA+AGG + chr8_1:79705086-79705105 None:intergenic 45.0%
ACTCGGATGATGAGGATGAT+GGG + chr8_1:79705143-79705162 None:intergenic 45.0%
AACTCGGATGATGAGGATGA+TGG + chr8_1:79705144-79705163 None:intergenic 45.0%
GATGACATTCTGGATGAAGC+AGG + chr8_1:79705201-79705220 None:intergenic 45.0%
!! AGCTGGCTTGACTTTGTCAA+CGG - chr8_1:79705245-79705264 Msa1217430:intron 45.0%
GACTTTGTCAACGGTTGTAC+CGG - chr8_1:79705254-79705273 Msa1217430:intron 45.0%
TGGGCATCTGATTGAGAAAC+CGG + chr8_1:79705276-79705295 None:intergenic 45.0%
! GGAACTCTGAGAAGATGGTT+GGG + chr8_1:79705295-79705314 None:intergenic 45.0%
CAACCATCTTCTCAGAGTTC+CGG - chr8_1:79705294-79705313 Msa1217430:intron 45.0%
ACTGGGAGTTGCTAAAGAAC+CGG + chr8_1:79705316-79705335 None:intergenic 45.0%
! TTAGCTTGAGGTGTGAGAGA+CGG + chr8_1:79705355-79705374 None:intergenic 45.0%
ACTCATGGAGGGTCTCAAAT+AGG - chr8_1:79705438-79705457 Msa1217430:intron 45.0%
ATGACTGTTGGACCTGAACT+GGG + chr8_1:79705481-79705500 None:intergenic 45.0%
AATGACTGTTGGACCTGAAC+TGG + chr8_1:79705482-79705501 None:intergenic 45.0%
TCAAGCTTTCGTGTGAGATC+AGG - chr8_1:79706032-79706051 Msa1217430:five_prime_UTR 45.0%
CCATTGTACGGACGAAACGA+AGG + chr8_1:79701962-79701981 None:intergenic 50.0%
CCTTCGTTTCGTCCGTACAA+TGG - chr8_1:79701959-79701978 Msa1217430:three_prime_UTR 50.0%
! AGTACCTTCATCAGCACCGA+CGG + chr8_1:79702054-79702073 None:intergenic 50.0%
GTGAATGTTGCAGGGTATGG+TGG - chr8_1:79702163-79702182 Msa1217430:three_prime_UTR 50.0%
!! TGTTGCAGGGTATGGTGGAT+TGG - chr8_1:79702168-79702187 Msa1217430:three_prime_UTR 50.0%
!! TATGGTGGATTGGTTGGTGG+TGG - chr8_1:79702178-79702197 Msa1217430:three_prime_UTR 50.0%
TCAGCTTCATCAGGTCGTTG+TGG + chr8_1:79702214-79702233 None:intergenic 50.0%
!! GCGGTTATGGTTCTAGGTGT+CGG - chr8_1:79702263-79702282 Msa1217430:three_prime_UTR 50.0%
TTTAACCATCCACGTGACCG+TGG - chr8_1:79702286-79702305 Msa1217430:three_prime_UTR 50.0%
ATTGGAGCTGCTAGGATTGC+CGG - chr8_1:79702578-79702597 Msa1217430:CDS 50.0%
GGGGAATATCCAGAACGAGT+TGG - chr8_1:79702599-79702618 Msa1217430:CDS 50.0%
TCTTGCATGCATGTCAGTGC+AGG - chr8_1:79702845-79702864 Msa1217430:intron 50.0%
TCATGCTGCAGTACTATGCG+AGG - chr8_1:79702952-79702971 Msa1217430:intron 50.0%
AGGACGGGATCGTGCAAATT+TGG - chr8_1:79702972-79702991 Msa1217430:intron 50.0%
GTATCACCATCCTAGACAGG+CGG - chr8_1:79703007-79703026 Msa1217430:intron 50.0%
ATTCCATCATCCACAGCCTG+CGG - chr8_1:79703266-79703285 Msa1217430:intron 50.0%
GAAACTTGGGGAACTGGTGA+TGG + chr8_1:79703309-79703328 None:intergenic 50.0%
AGAGGTGAAACTTGGGGAAC+TGG + chr8_1:79703315-79703334 None:intergenic 50.0%
! GCATTGGCAGAGGTGAAACT+TGG + chr8_1:79703323-79703342 None:intergenic 50.0%
AGTTTCACCTCTGCCAATGC+CGG - chr8_1:79703323-79703342 Msa1217430:intron 50.0%
!! ATAGGTGAAGGTACCGGCAT+TGG + chr8_1:79703339-79703358 None:intergenic 50.0%
TGTTGTTGTGAAGGACCGGA+CGG + chr8_1:79703381-79703400 None:intergenic 50.0%
TCATTTGTCCAGGGCCCTTA+TGG - chr8_1:79703441-79703460 Msa1217430:intron 50.0%
CATTTGTCCAGGGCCCTTAT+GGG - chr8_1:79703442-79703461 Msa1217430:intron 50.0%
! ATGGTGGGGGACATTACCAT+TGG + chr8_1:79703468-79703487 None:intergenic 50.0%
! AATGGTAATGTCCCCCACCA+TGG - chr8_1:79703467-79703486 Msa1217430:intron 50.0%
TGAAAAAGGGACCATGGTGG+GGG + chr8_1:79703481-79703500 None:intergenic 50.0%
CTGAAAAAGGGACCATGGTG+GGG + chr8_1:79703482-79703501 None:intergenic 50.0%
CCTGAAAAAGGGACCATGGT+GGG + chr8_1:79703483-79703502 None:intergenic 50.0%
AAGGGCTCCAGCCTGAAAAA+GGG + chr8_1:79703494-79703513 None:intergenic 50.0%
TAAGGGCTCCAGCCTGAAAA+AGG + chr8_1:79703495-79703514 None:intergenic 50.0%
AGCCCTTATCAGGTATGTCC+CGG - chr8_1:79703507-79703526 Msa1217430:intron 50.0%
GTCCGGGACATACCTGATAA+GGG + chr8_1:79703512-79703531 None:intergenic 50.0%
AGTCCGGGACATACCTGATA+AGG + chr8_1:79703513-79703532 None:intergenic 50.0%
TGCGTCGAACCAACACTCAA+CGG + chr8_1:79703636-79703655 None:intergenic 50.0%
!! GTTGGTTCGACGCAGCTTTA+TGG - chr8_1:79703642-79703661 Msa1217430:intron 50.0%
GGTCCAGAATAGACGGTTGT+TGG + chr8_1:79703687-79703706 None:intergenic 50.0%
TCTGGACCTTACCAATCCTC+TGG - chr8_1:79703699-79703718 Msa1217430:intron 50.0%
GATTGGTAAGGACCAGCTGA+GGG + chr8_1:79703726-79703745 None:intergenic 50.0%
AGATTGGTAAGGACCAGCTG+AGG + chr8_1:79703727-79703746 None:intergenic 50.0%
GCTGGTCCTTACCAATCTTC+TGG - chr8_1:79703729-79703748 Msa1217430:intron 50.0%
GAGGGACCAGAAGATTGGTA+AGG + chr8_1:79703738-79703757 None:intergenic 50.0%
CAATCTTCTGGTCCCTCAAC+CGG - chr8_1:79703771-79703790 Msa1217430:intron 50.0%
CTGACTACTACCTGAAGGAC+CGG + chr8_1:79703793-79703812 None:intergenic 50.0%
TGCTGACATTCCTGCTGATC+AGG + chr8_1:79703840-79703859 None:intergenic 50.0%
ATATCATCATCCGCCGGACA+TGG - chr8_1:79703902-79703921 Msa1217430:CDS 50.0%
TATCATCATCCGCCGGACAT+GGG - chr8_1:79703903-79703922 Msa1217430:CDS 50.0%
!! ACTTTTGGTGCACCCATGTC+CGG + chr8_1:79703918-79703937 None:intergenic 50.0%
!!! TTTTTTTTTTGGGGGGGGGG+GGG + chr8_1:79704365-79704384 None:intergenic 50.0%
CGCTGGGTATAATGAGTGCA+AGG + chr8_1:79704985-79705004 None:intergenic 50.0%
TGCACTCATTATACCCAGCG+TGG - chr8_1:79704985-79705004 Msa1217430:intron 50.0%
!! TGATGGGGCAAGAGTACCAA+TGG + chr8_1:79705127-79705146 None:intergenic 50.0%
CTCGGATGATGAGGATGATG+GGG + chr8_1:79705142-79705161 None:intergenic 50.0%
CATCCTCATCATCCGAGTTG+AGG - chr8_1:79705145-79705164 Msa1217430:intron 50.0%
TGCAAGTTCAGGCCTCAACT+CGG + chr8_1:79705160-79705179 None:intergenic 50.0%
TTGAGGCCTGAACTTGCATC+AGG - chr8_1:79705162-79705181 Msa1217430:intron 50.0%
CTGGATCCTGATGCAAGTTC+AGG + chr8_1:79705171-79705190 None:intergenic 50.0%
ACTTGCATCAGGATCCAGCA+AGG - chr8_1:79705173-79705192 Msa1217430:intron 50.0%
! CGGAACTCTGAGAAGATGGT+TGG + chr8_1:79705296-79705315 None:intergenic 50.0%
! GAACCGGAACTCTGAGAAGA+TGG + chr8_1:79705300-79705319 None:intergenic 50.0%
GTGGATGGGCATGTGCATAA+TGG + chr8_1:79705648-79705667 None:intergenic 50.0%
GAGACGACCCATCGTTAGCT+CGG + chr8_1:79701998-79702017 None:intergenic 55.0%
ATTGCACTCTGATCCGTCGC+CGG - chr8_1:79702019-79702038 Msa1217430:three_prime_UTR 55.0%
!! ACTTCCGTCGGTGCTGATGA+AGG - chr8_1:79702047-79702066 Msa1217430:three_prime_UTR 55.0%
!! GCAGGGTATGGTGGATTGGT+TGG - chr8_1:79702172-79702191 Msa1217430:three_prime_UTR 55.0%
!! GGGTATGGTGGATTGGTTGG+TGG - chr8_1:79702175-79702194 Msa1217430:three_prime_UTR 55.0%
TTGGAGCTGCTAGGATTGCC+GGG - chr8_1:79702579-79702598 Msa1217430:CDS 55.0%
GCTGCAGTACTATGCGAGGA+CGG - chr8_1:79702956-79702975 Msa1217430:intron 55.0%
CTGCAGTACTATGCGAGGAC+GGG - chr8_1:79702957-79702976 Msa1217430:intron 55.0%
TTCCATCATCCACAGCCTGC+GGG - chr8_1:79703267-79703286 Msa1217430:intron 55.0%
CAAACTGTACAGCCTCCGTC+CGG - chr8_1:79703363-79703382 Msa1217430:intron 55.0%
! CCCACCATGGTCCCTTTTTC+AGG - chr8_1:79703480-79703499 Msa1217430:intron 55.0%
GCCTGAAAAAGGGACCATGG+TGG + chr8_1:79703484-79703503 None:intergenic 55.0%
CCAGCCTGAAAAAGGGACCA+TGG + chr8_1:79703487-79703506 None:intergenic 55.0%
!!! CCATGGTCCCTTTTTCAGGC+TGG - chr8_1:79703484-79703503 Msa1217430:intron 55.0%
TTCAGGCTGGAGCCCTTATC+AGG - chr8_1:79703497-79703516 Msa1217430:intron 55.0%
!! GGAAGTACAGGACTTGCTGC+TGG + chr8_1:79703603-79703622 None:intergenic 55.0%
! GAGGGACCAGAGGATTGGTA+AGG + chr8_1:79703708-79703727 None:intergenic 55.0%
CAGCTGAGGGACCAGAAGAT+TGG + chr8_1:79703743-79703762 None:intergenic 55.0%
CAATCTTCTGGTCCCTCAGC+TGG - chr8_1:79703741-79703760 Msa1217430:intron 55.0%
CTACCTGAAGGACCGGTTGA+GGG + chr8_1:79703786-79703805 None:intergenic 55.0%
ACTACCTGAAGGACCGGTTG+AGG + chr8_1:79703787-79703806 None:intergenic 55.0%
ACCTGAAAGGCCTGATCAGC+AGG - chr8_1:79703827-79703846 Msa1217430:intron 55.0%
TCCTGCTGATCAGGCCTTTC+AGG + chr8_1:79703831-79703850 None:intergenic 55.0%
!! TATTGGCCTTCCTTTGCGCC+CGG - chr8_1:79703950-79703969 Msa1217430:CDS 55.0%
TCATTACCGGGCGCAAAGGA+AGG + chr8_1:79703959-79703978 None:intergenic 55.0%
!!! TTTTTTTTTGGGGGGGGGGG+GGG + chr8_1:79704364-79704383 None:intergenic 55.0%
CTGTAACTCAGGGATCCCGT+AGG + chr8_1:79705048-79705067 None:intergenic 55.0%
CCAGTTGCACCCTATCCTGT+GGG - chr8_1:79705096-79705115 Msa1217430:intron 55.0%
! ATGGCGGAACCCACAGGATA+GGG + chr8_1:79705108-79705127 None:intergenic 55.0%
! AATGGCGGAACCCACAGGAT+AGG + chr8_1:79705109-79705128 None:intergenic 55.0%
TATCCTGTGGGTTCCGCCAT+TGG - chr8_1:79705108-79705127 Msa1217430:intron 55.0%
!! TGGGGCAAGAGTACCAATGG+CGG + chr8_1:79705124-79705143 None:intergenic 55.0%
AGGCCTCAACTCGGATGATG+AGG + chr8_1:79705151-79705170 None:intergenic 55.0%
! AGCACATCGACTGCTTCAGC+TGG - chr8_1:79705228-79705247 Msa1217430:CDS 55.0%
!! GTGCTACTTGTGGTGGCACT+GGG + chr8_1:79705333-79705352 None:intergenic 55.0%
!! AGAGACGGTGCTACTTGTGG+TGG + chr8_1:79705340-79705359 None:intergenic 55.0%
!! GTGAGAGACGGTGCTACTTG+TGG + chr8_1:79705343-79705362 None:intergenic 55.0%
AGGTACGGCCGAGCTAACGA+TGG - chr8_1:79701987-79702006 Msa1217430:three_prime_UTR 60.0%
GGTACGGCCGAGCTAACGAT+GGG - chr8_1:79701988-79702007 Msa1217430:three_prime_UTR 60.0%
ACTCTGATCCGTCGCCGGAA+TGG - chr8_1:79702024-79702043 Msa1217430:three_prime_UTR 60.0%
ACGGAAGTCCATTCCGGCGA+CGG + chr8_1:79702035-79702054 None:intergenic 60.0%
! TCGCCGGAATGGACTTCCGT+CGG - chr8_1:79702035-79702054 Msa1217430:three_prime_UTR 60.0%
! GCACCGACGGAAGTCCATTC+CGG + chr8_1:79702041-79702060 None:intergenic 60.0%
TGGAGCTGCTAGGATTGCCG+GGG - chr8_1:79702580-79702599 Msa1217430:CDS 60.0%
! ACGGGCTGTCCAACTCGTTC+TGG + chr8_1:79702611-79702630 None:intergenic 60.0%
AGTTGGACAGCCCGTTTGCC+AGG - chr8_1:79702616-79702635 Msa1217430:CDS 60.0%
TTCCTGCCGCCTGTCTAGGA+TGG + chr8_1:79703016-79703035 None:intergenic 60.0%
GTAGTTCCTGCCGCCTGTCT+AGG + chr8_1:79703020-79703039 None:intergenic 60.0%
GCTATCATTTGGCCACCCGC+AGG + chr8_1:79703285-79703304 None:intergenic 60.0%
!! GAAGGTACCGGCATTGGCAG+AGG + chr8_1:79703333-79703352 None:intergenic 60.0%
TGTTGTGAAGGACCGGACGG+AGG + chr8_1:79703378-79703397 None:intergenic 60.0%
GCGAGGCCACCTCTTCTACA+TGG - chr8_1:79703417-79703436 Msa1217430:intron 60.0%
CAGCTGAGGGACCAGAGGAT+TGG + chr8_1:79703713-79703732 None:intergenic 60.0%
CAATCCTCTGGTCCCTCAGC+TGG - chr8_1:79703711-79703730 Msa1217430:intron 60.0%
! TTTGGTGCACCCATGTCCGG+CGG + chr8_1:79703915-79703934 None:intergenic 60.0%
GGGCGCAAAGGAAGGCCAAT+AGG + chr8_1:79703951-79703970 None:intergenic 60.0%
!!! TTTTTTTTGGGGGGGGGGGG+GGG + chr8_1:79704363-79704382 None:intergenic 60.0%
GCCAGTTGCACCCTATCCTG+TGG - chr8_1:79705095-79705114 Msa1217430:intron 60.0%
CCCACAGGATAGGGTGCAAC+TGG + chr8_1:79705099-79705118 None:intergenic 60.0%
! GTACCAATGGCGGAACCCAC+AGG + chr8_1:79705114-79705133 None:intergenic 60.0%
GGATGAAGCAGGCTCCTTGC+TGG + chr8_1:79705190-79705209 None:intergenic 60.0%
!! GGTGCTACTTGTGGTGGCAC+TGG + chr8_1:79705334-79705353 None:intergenic 60.0%
TTTACCGCGCCACGGTCACG+TGG + chr8_1:79702298-79702317 None:intergenic 65.0%
TGGACAGCCCGTTTGCCAGG+TGG - chr8_1:79702619-79702638 Msa1217430:CDS 65.0%
CACCATCCTAGACAGGCGGC+AGG - chr8_1:79703011-79703030 Msa1217430:intron 65.0%
CACCCGCAGGCTGTGGATGA+TGG + chr8_1:79703272-79703291 None:intergenic 65.0%
CATCATCCACAGCCTGCGGG+TGG - chr8_1:79703270-79703289 Msa1217430:intron 65.0%
ATTTGGCCACCCGCAGGCTG+TGG + chr8_1:79703279-79703298 None:intergenic 65.0%
CCATTGGCCCATAAGGGCCC+TGG + chr8_1:79703452-79703471 None:intergenic 65.0%
CCAGGGCCCTTATGGGCCAA+TGG - chr8_1:79703449-79703468 Msa1217430:intron 65.0%
AGGACCAGCTGAGGGACCAG+AGG + chr8_1:79703718-79703737 None:intergenic 65.0%
GGTCCCTCAACCGGTCCTTC+AGG - chr8_1:79703780-79703799 Msa1217430:intron 65.0%
CCATCCACGTGACCGTGGCG+CGG - chr8_1:79702291-79702310 Msa1217430:three_prime_UTR 70.0%
CCGCGCCACGGTCACGTGGA+TGG + chr8_1:79702294-79702313 None:intergenic 75.0%
!! TTTTGGGGGGGGGGGGGGGT+GGG + chr8_1:79704359-79704378 None:intergenic 75.0%
!! TTTTTGGGGGGGGGGGGGGG+TGG + chr8_1:79704360-79704379 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 79701733 79706102 79701733 ID=Msa1217430;Name=Msa1217430
chr8_1 mRNA 79701733 79706102 79701733 ID=Msa1217430-mRNA-1;Parent=Msa1217430;Name=Msa1217430-mRNA-1;_AED=0.06;_eAED=0.06;_QI=245|1|1|1|1|1|7|728|500
chr8_1 exon 79701733 79702862 79701733 ID=Msa1217430-mRNA-1:exon:27849;Parent=Msa1217430-mRNA-1
chr8_1 exon 79703864 79704238 79703864 ID=Msa1217430-mRNA-1:exon:27848;Parent=Msa1217430-mRNA-1
chr8_1 exon 79704317 79704631 79704317 ID=Msa1217430-mRNA-1:exon:27847;Parent=Msa1217430-mRNA-1
chr8_1 exon 79704753 79704872 79704753 ID=Msa1217430-mRNA-1:exon:27846;Parent=Msa1217430-mRNA-1
chr8_1 exon 79705198 79705260 79705198 ID=Msa1217430-mRNA-1:exon:27845;Parent=Msa1217430-mRNA-1
chr8_1 exon 79705523 79705659 79705523 ID=Msa1217430-mRNA-1:exon:27844;Parent=Msa1217430-mRNA-1
chr8_1 exon 79705767 79706102 79705767 ID=Msa1217430-mRNA-1:exon:27843;Parent=Msa1217430-mRNA-1
chr8_1 five_prime_UTR 79705858 79706102 79705858 ID=Msa1217430-mRNA-1:five_prime_utr;Parent=Msa1217430-mRNA-1
chr8_1 CDS 79705767 79705857 79705767 ID=Msa1217430-mRNA-1:cds;Parent=Msa1217430-mRNA-1
chr8_1 CDS 79705523 79705659 79705523 ID=Msa1217430-mRNA-1:cds;Parent=Msa1217430-mRNA-1
chr8_1 CDS 79705198 79705260 79705198 ID=Msa1217430-mRNA-1:cds;Parent=Msa1217430-mRNA-1
chr8_1 CDS 79704753 79704872 79704753 ID=Msa1217430-mRNA-1:cds;Parent=Msa1217430-mRNA-1
chr8_1 CDS 79704317 79704631 79704317 ID=Msa1217430-mRNA-1:cds;Parent=Msa1217430-mRNA-1
chr8_1 CDS 79703864 79704238 79703864 ID=Msa1217430-mRNA-1:cds;Parent=Msa1217430-mRNA-1
chr8_1 CDS 79702461 79702862 79702461 ID=Msa1217430-mRNA-1:cds;Parent=Msa1217430-mRNA-1
chr8_1 three_prime_UTR 79701733 79702460 79701733 ID=Msa1217430-mRNA-1:three_prime_utr;Parent=Msa1217430-mRNA-1
Gene Sequence

>Msa1217430

ATGGAACAAAGGTACGGCCGAGCTAACGATGGGTCGTCTCAATTGCACTCTGATCCGTCGCCGGAATGGACTTCCGTCGGTGCTGATGAAGGGTATGGTGGATTGGTTGGTGGTGGTGAATCGTATCCACAACGACCTGATGAAGCTGATTGTATCTATTATTTGAGGACAGGTTTTTGCGGTTATGGTTCTAGGTGTCGGTTTAACCATCCACGTGACCGTGGCGCGGTTATTGGAGCTGCTAGGATTGCCGGGGAATATCCAGAACGAGTTGGACAGCCCGTTTGCCAGTACTATGCGAGGACGGGATCGTGCAAATTTGGCGCTTCCTGCAAGTATCACCATCCTAGACAGGCGGCAGGAACTACTGCTCCTGTGTCGCTAAATTGTTATGGATATCCGTTGCGAGTGGGTGAGAAAGAGTGTTCCTATTATGTGAAAACGGGACAATGCAAGTTTGGTGCAACATGTAAATTCCATCATCCACAGCCTGCGGGTGGCCAAATGATAGCACCATCACCAGTTCCCCAAGTTTCACCTCTGCCAATGCCGGTACCTTCACCTATTTATCAAACTGTACAGCCTCCGTCCGGTCCTTCACAACAACAATATGGTGTACTTGTTGCGAGGCCACCTCTTCTACATGGCTCATTTGTCCAGGGCCCTTATGGGCCAATGGTAATGTCCCCCACCATGGTCCCTTTTTCAGGCTGGAGCCCTTATCAGGCTCCAGCAGCAAGTCCTGTACTTCCTTCTAGTACTCCGTTGAGTGTTGGTTCGACGCAGCTTTATGGGATAACTCAGCTACCTTCACCAACAACCGTCTATTCTGGACCTTACCAATCCTCTGGTCCCTCAGCTGGTCCTTACCAATCTTCTGGTCCCTCAGCTGGTCCTTATCAATCTTCTGGTCCCTCAACCGGTCCTTCAGGTAGTAGTCAGAAGGAACACTCATTACCTGAAAGGCCTGATCAGCAGGAATGTCAGCATTACATGAAAACAGGGGACTGTAAATTTGGTTCTACATGTAGATATCATCATCCGCCGGACATGGGTGCACCAAAAGTGAACCTTAGTCCTATTGGCCTTCCTTTGCGCCCGGGAGCACAACCTTGCACTCATTATACCCAGCGTGGATTTTGTAAGTTTGGATCTGCGTGCAAGTTTGATCATCCTACGGGATCCCTGAGTTACAGTCCATCTGCTTCTTCCCTTTCTGATATGCCAGTTGCACCCTATCCTGTGGGTTCCGCCATTGGTACTCTTGCCCCATCATCCTCATCATCCGAGTTGAGGCCTGAACTTGCATCAGGATCCAGCAAGGAGCCTGCTTCATCCAGAATGTCATCATCAATGAGCACATCGACTGCTTCAGCTGGCTTGACTTTGTCAACGGTTGTACCGGTTTCTCAATCAGATGCCCAACCATCTTCTCAGAGTTCCGGTTCTTTAGCAACTCCCAGTGCCACCACAAGTAGCACCGTCTCTCACACCTCAAGCTAA
Protein sequence

>Msa1217430

MEQRYGRANDGSSQLHSDPSPEWTSVGADEGYGGLVGGGESYPQRPDEADCIYYLRTGFCGYGSRCRFNHPRDRGAVIGAARIAGEYPERVGQPVCQYYARTGSCKFGASCKYHHPRQAAGTTAPVSLNCYGYPLRVGEKECSYYVKTGQCKFGATCKFHHPQPAGGQMIAPSPVPQVSPLPMPVPSPIYQTVQPPSGPSQQQYGVLVARPPLLHGSFVQGPYGPMVMSPTMVPFSGWSPYQAPAASPVLPSSTPLSVGSTQLYGITQLPSPTTVYSGPYQSSGPSAGPYQSSGPSAGPYQSSGPSTGPSGSSQKEHSLPERPDQQECQHYMKTGDCKFGSTCRYHHPPDMGAPKVNLSPIGLPLRPGAQPCTHYTQRGFCKFGSACKFDHPTGSLSYSPSASSLSDMPVAPYPVGSAIGTLAPSSSSSELRPELASGSSKEPASSRMSSSMSTSTASAGLTLSTVVPVSQSDAQPSSQSSGSLATPSATTSSTVSHTSS*