AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0568140


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0568140 MtrunA17_Chr8g0383291 95.167 538 14 4 1 535 1 529 0.0 1050
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0568140 AT2G21860.1 63.830 517 160 6 20 531 22 516 0.0 687

Find 133 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTGCTAATAACTAAATTT+TGG 0.080483 4_1:-69725673 None:intergenic
ATCCAATTTGGATCATTAAT+TGG 0.131007 4_1:-69725569 None:intergenic
CTTCACACATTCATCCAATT+TGG 0.176528 4_1:-69725581 None:intergenic
AATTCAGAGTGTTACCATTT+TGG 0.211658 4_1:+69722559 Msa0568140:five_prime_UTR
TTGGTATGAACCTGTATTTC+AGG 0.220087 4_1:+69725163 Msa0568140:CDS
GAAAAGCAAAAGGGTCATTT+TGG 0.227489 4_1:+69725144 Msa0568140:CDS
CACTACTTCATATGAGTCTT+TGG 0.229822 4_1:-69724601 None:intergenic
CTAGATTTGAAGAACAAATT+AGG 0.233092 4_1:+69724504 Msa0568140:CDS
TGGATCATTAATTGGGTCTA+AGG 0.233727 4_1:-69725561 None:intergenic
GAAGTAAAGGGAAGCATATT+TGG 0.240241 4_1:+69724546 Msa0568140:CDS
ACCCAATTAATGATCCAAAT+TGG 0.246856 4_1:+69725567 Msa0568140:CDS
CCCTCTCAACTCTGCTTCTT+GGG 0.260895 4_1:+69722871 Msa0568140:CDS
AATATACATGATTCGATTAT+AGG 0.261113 4_1:-69725711 None:intergenic
GATTTGTTTGTTGGTTGGTT+AGG 0.262260 4_1:+69725035 Msa0568140:CDS
TTCGTCCTCTTTCTTTCATT+TGG 0.265759 4_1:-69725425 None:intergenic
GCCCTCTCAACTCTGCTTCT+TGG 0.274661 4_1:+69722870 Msa0568140:CDS
GCATGGAGAAGAATAGTAAA+AGG 0.274747 4_1:-69722708 None:intergenic
TTAGCAATAAGCTTGTTATC+AGG 0.279911 4_1:+69725687 Msa0568140:three_prime_UTR
AAGAATAGTAAAAGGGAAAA+AGG 0.282457 4_1:-69722700 None:intergenic
TATTTCAGTGTATTAGATAA+TGG 0.312534 4_1:+69725263 Msa0568140:CDS
CAAACGAAGAGTCGGTTAAC+TGG 0.314699 4_1:+69724430 Msa0568140:CDS
ATTTGTTTGTTGGTTGGTTA+GGG 0.319359 4_1:+69725036 Msa0568140:CDS
TGGAGCTGGCGCGTTGTAGC+GGG 0.328165 4_1:+69725068 Msa0568140:CDS
GAGTTATTTCAAATGAGTTT+TGG 0.328583 4_1:+69725285 Msa0568140:CDS
GCTGCAGGGCAGTCTTATAC+TGG 0.330058 4_1:+69725371 Msa0568140:CDS
TACTAATCAATGCTTATATA+AGG 0.337300 4_1:+69724685 Msa0568140:CDS
TTCATACGAAAGTGCGAATC+TGG 0.340979 4_1:+69724884 Msa0568140:CDS
TTCTCCTCCTCCATACCATT+TGG 0.346423 4_1:-69725202 None:intergenic
TCCAATTTGGATCATTAATT+GGG 0.354457 4_1:-69725568 None:intergenic
TCATGCATTGATCCTCCATT+AGG 0.361210 4_1:+69725512 Msa0568140:CDS
TATGGAGGAGGAGAAAATAT+AGG 0.367865 4_1:+69725210 Msa0568140:CDS
GACGCAGTTCTGACGATATA+CGG 0.372251 4_1:+69724649 Msa0568140:CDS
GTTAAGAGAGGTAAGGTATA+TGG 0.378832 4_1:+69725233 Msa0568140:CDS
GATGATGGAGGAAAGCAATA+AGG 0.384790 4_1:-69722767 None:intergenic
TCAACCATTGGAGGTACATA+TGG 0.385181 4_1:-69724975 None:intergenic
TCATTTGGAAATGCTCCATC+TGG 0.390598 4_1:-69725410 None:intergenic
TGGGGTTTGTTCCACTATCA+TGG 0.398219 4_1:+69725338 Msa0568140:CDS
ATGGAGGAGGAGAAAATATA+GGG 0.404522 4_1:+69725211 Msa0568140:CDS
TGTAGCTAATGACCTTAGTT+GGG 0.414877 4_1:+69725319 Msa0568140:CDS
TAATTACATACTTGATCAAC+AGG 0.415438 4_1:-69724849 None:intergenic
TCAGGTACTTAATTGCTTGT+TGG 0.420248 4_1:+69724782 Msa0568140:CDS
TTCTATAGAGGAAAAGCAAA+AGG 0.426359 4_1:+69725134 Msa0568140:CDS
GTTGAAGAACTGCGGTCGTC+AGG 0.432171 4_1:+69724764 Msa0568140:CDS
GAGATTCACAATGAAGTAAA+GGG 0.435424 4_1:+69724534 Msa0568140:CDS
CAGTATCAGTTATTCTATAG+AGG 0.439594 4_1:+69725122 Msa0568140:CDS
ATTGCAGAAGATTTGTTTGT+TGG 0.440824 4_1:+69725026 Msa0568140:CDS
CATGGAGAAGAATAGTAAAA+GGG 0.442617 4_1:-69722707 None:intergenic
ATGGAGCTGGCGCGTTGTAG+CGG 0.444125 4_1:+69725067 Msa0568140:CDS
GAATGAATAAGAAACCAAAA+TGG 0.444706 4_1:-69722573 None:intergenic
ATGTAGCTAATGACCTTAGT+TGG 0.456001 4_1:+69725318 Msa0568140:CDS
GAACCCTCTGGAGTTCCTAA+TGG 0.461453 4_1:-69725527 None:intergenic
CATGGAGCTGCTAAAGCTGC+AGG 0.462494 4_1:+69725356 Msa0568140:CDS
CAGCCTTCAGTAATTCTCTC+TGG 0.462625 4_1:-69724383 None:intergenic
TTCAACATTCATCATAGAGC+TGG 0.464026 4_1:-69725734 None:intergenic
CTTTAGCAGCTCCATGATAG+TGG 0.464240 4_1:-69725349 None:intergenic
TGAGATTCACAATGAAGTAA+AGG 0.466183 4_1:+69724533 Msa0568140:CDS
TGCCCGCGAAATTCAACCAT+TGG 0.472472 4_1:-69724987 None:intergenic
TAGCAATAAGCTTGTTATCA+GGG 0.483021 4_1:+69725688 Msa0568140:three_prime_UTR
CTGCAGGGCAGTCTTATACT+GGG 0.487163 4_1:+69725372 Msa0568140:CDS
CAATTTGACCACTGTTAATG+TGG 0.487984 4_1:+69725775 Msa0568140:three_prime_UTR
CTCCAATGGTTGAATTTCGC+GGG 0.489296 4_1:+69724985 Msa0568140:CDS
CCTCCAATGGTTGAATTTCG+CGG 0.500724 4_1:+69724984 Msa0568140:CDS
GTTGGTTAGGGAGTTTGCAA+TGG 0.502644 4_1:+69725048 Msa0568140:CDS
GGAGGTACATATGGCTTGGT+AGG 0.502838 4_1:-69724966 None:intergenic
TTGTAACACGCAAAGCGAAA+AGG 0.503295 4_1:-69724910 None:intergenic
CATTTGAAGGCCAAATGGTA+TGG 0.506239 4_1:+69725192 Msa0568140:CDS
CCCAAGAAGCAGAGTTGAGA+GGG 0.506484 4_1:-69722871 None:intergenic
AGAGAGATTGAGAATGAGCA+TGG 0.506508 4_1:-69722725 None:intergenic
AGAAATGTGAAATCAAAGAG+TGG 0.510895 4_1:+69725465 Msa0568140:CDS
GCAGTACTTGTTAGTCCAGA+TGG 0.511090 4_1:+69725395 Msa0568140:CDS
CAGAAGATTTGTTTGTTGGT+TGG 0.512517 4_1:+69725030 Msa0568140:CDS
AGATTGAAATGGGTTGATGA+AGG 0.515244 4_1:+69724309 Msa0568140:CDS
TAGGGAGTTTGCAATGGAGC+TGG 0.515365 4_1:+69725054 Msa0568140:CDS
TGCAAACTGTAACCGAAGCA+TGG 0.534436 4_1:+69724622 Msa0568140:CDS
GAATGAAAACTTGAACCCTC+TGG 0.534497 4_1:-69725539 None:intergenic
TCCACGGTTGTTGATGATGA+TGG 0.535345 4_1:-69722782 None:intergenic
AGTGGAACAAACCCCAACTA+AGG 0.536966 4_1:-69725331 None:intergenic
TTCAGTAATTCTCTCTGGAG+TGG 0.537115 4_1:-69724378 None:intergenic
CAAGGGAATTGATCATATGC+TGG 0.540848 4_1:-69725098 None:intergenic
AGAAAATATAGGGTTAAGAG+AGG 0.541135 4_1:+69725221 Msa0568140:CDS
GTGAGGATGGTGGCTATAGT+TGG 0.542421 4_1:+69722833 Msa0568140:CDS
TTTCGTATGAAGCGATGCAT+CGG 0.549436 4_1:-69724872 None:intergenic
CATTGGAGGTACATATGGCT+TGG 0.556737 4_1:-69724970 None:intergenic
TGGGAAGATGAAGTTGCAGT+TGG 0.559282 4_1:-69722613 None:intergenic
ATATAGGGTTAAGAGAGGTA+AGG 0.560870 4_1:+69725226 Msa0568140:CDS
GATTGAAATGGGTTGATGAA+GGG 0.563961 4_1:+69724310 Msa0568140:CDS
GTAGCTAATGACCTTAGTTG+GGG 0.568269 4_1:+69725320 Msa0568140:CDS
GGATGAGCCTCCGGTGAGGA+TGG 0.570432 4_1:+69722820 Msa0568140:CDS
AAGATGAAGTTGCAGTTGGA+AGG 0.572125 4_1:-69722609 None:intergenic
TGCAGGGCAGTCTTATACTG+GGG 0.572559 4_1:+69725373 Msa0568140:CDS
ACTGCGTCGATCCCATGCTT+CGG 0.573705 4_1:-69724634 None:intergenic
TCTATAGAGGAAAAGCAAAA+GGG 0.579875 4_1:+69725135 Msa0568140:CDS
GGAGCTGGCGCGTTGTAGCG+GGG 0.580346 4_1:+69725069 Msa0568140:CDS
GAAATGTGAAATCAAAGAGT+GGG 0.580566 4_1:+69725466 Msa0568140:CDS
TGTGACGATGGATGAGCCTC+CGG 0.581185 4_1:+69722811 Msa0568140:CDS
ATGGTGGCTATAGTTGGCCA+TGG 0.581673 4_1:+69722839 Msa0568140:CDS
CGCTGTTACAAACGAAGAGT+CGG 0.585099 4_1:+69724422 Msa0568140:CDS
GCAAACTGTAACCGAAGCAT+GGG 0.587392 4_1:+69724623 Msa0568140:CDS
CAAGCCATATGTACCTCCAA+TGG 0.587511 4_1:+69724971 Msa0568140:CDS
ATGGAGCTGCTAAAGCTGCA+GGG 0.587852 4_1:+69725357 Msa0568140:CDS
AGGAAAGCAATAAGGAGTAG+TGG 0.591834 4_1:-69722759 None:intergenic
CCGCGAAATTCAACCATTGG+AGG 0.592602 4_1:-69724984 None:intergenic
AATTTGACCACTGTTAATGT+GGG 0.594194 4_1:+69725776 Msa0568140:three_prime_UTR
CATTTCCAAATGAAAGAAAG+AGG 0.597148 4_1:+69725420 Msa0568140:CDS
TAAAACCTGGTTGCATAGTG+AGG 0.598541 4_1:+69722496 None:intergenic
AAGGCCAAATGGTATGGAGG+AGG 0.599053 4_1:+69725198 Msa0568140:CDS
GAGGTACATATGGCTTGGTA+GGG 0.599296 4_1:-69724965 None:intergenic
ACTATAGCCACCATCCTCAC+CGG 0.601762 4_1:-69722830 None:intergenic
TCCCAAGAAGCAGAGTTGAG+AGG 0.610361 4_1:-69722872 None:intergenic
CCCTCTGGAGTTCCTAATGG+AGG 0.612391 4_1:-69725524 None:intergenic
AACTGTATGTTGAAGAACTG+CGG 0.613073 4_1:+69724756 Msa0568140:CDS
TGAGAGGGCTGACAGCTCCA+TGG 0.617554 4_1:-69722856 None:intergenic
TGAGTTTGAAGCACATGTGT+GGG 0.620501 4_1:-69722632 None:intergenic
GATTTGAAGAACAAATTAGG+AGG 0.621101 4_1:+69724507 Msa0568140:CDS
CATCGTCACATCAGAGTCCA+CGG 0.621255 4_1:-69722798 None:intergenic
TAGAATAACTGATACTGACA+AGG 0.624633 4_1:-69725116 None:intergenic
GCTTACCTCACTATGCAACC+AGG 0.624883 4_1:-69722501 None:intergenic
TGAGCCTCCGGTGAGGATGG+TGG 0.634453 4_1:+69722823 Msa0568140:CDS
ATTAGATTGAATGCACTCGT+CGG 0.634851 4_1:-69724352 None:intergenic
TTGAAGGCCAAATGGTATGG+AGG 0.635847 4_1:+69725195 Msa0568140:CDS
TTAACAGTGGTCAAATTGAG+AGG 0.640423 4_1:-69725770 None:intergenic
TTGAGTTTGAAGCACATGTG+TGG 0.641740 4_1:-69722633 None:intergenic
TCCTCCATTAGGAACTCCAG+AGG 0.661740 4_1:+69725523 Msa0568140:CDS
TCCATCATCATCAACAACCG+TGG 0.662563 4_1:+69722781 Msa0568140:CDS
CGTGGACTCTGATGTGACGA+TGG 0.665005 4_1:+69722799 Msa0568140:CDS
TTGATCTCCCACATTAACAG+TGG 0.684018 4_1:-69725783 None:intergenic
CGATGGATGAGCCTCCGGTG+AGG 0.688939 4_1:+69722816 Msa0568140:CDS
ACTCCAGAGAGAATTACTGA+AGG 0.689331 4_1:+69724380 Msa0568140:CDS
ATAGCCACCATCCTCACCGG+AGG 0.702930 4_1:-69722827 None:intergenic
AGAATAACTGATACTGACAA+GGG 0.703774 4_1:-69725115 None:intergenic
CCTCCATTAGGAACTCCAGA+GGG 0.705121 4_1:+69725524 Msa0568140:CDS
ACGGTTGTTGATGATGATGG+AGG 0.719236 4_1:-69722779 None:intergenic
ATAGTGAGGTAAGCAGTGAG+TGG 0.757329 4_1:+69722510 Msa0568140:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATCTTTTTTTCTTTATTTAT+TGG + chr4_1:69723705-69723724 Msa0568140:intron 10.0%
!! ATTAAATAAAAGAAATATGT+GGG - chr4_1:69723813-69723832 None:intergenic 10.0%
!! TTATATCCTTATATAAAAAC+AGG - chr4_1:69722966-69722985 None:intergenic 15.0%
!! ATTTCAATATAAAAATAGCT+TGG - chr4_1:69723022-69723041 None:intergenic 15.0%
!!! TTATTTTATTTATCCAAACA+GGG - chr4_1:69723095-69723114 None:intergenic 15.0%
!!! TTTATTTTATTTATCCAAAC+AGG - chr4_1:69723096-69723115 None:intergenic 15.0%
!! TTATGATATAGTAGTTAATT+AGG - chr4_1:69723766-69723785 None:intergenic 15.0%
!! GATTAAATAAAAGAAATATG+TGG - chr4_1:69723814-69723833 None:intergenic 15.0%
!!! ATTGCTAATAACTAAATTTT+GGG - chr4_1:69725675-69725694 None:intergenic 15.0%
!!! TATTGCTAATAACTAAATTT+TGG - chr4_1:69725676-69725695 None:intergenic 15.0%
!!! CTATAACCTGTTTTTATATA+AGG + chr4_1:69722957-69722976 Msa0568140:intron 20.0%
!! AGAACTTATATGAAAACATT+TGG - chr4_1:69723121-69723140 None:intergenic 20.0%
!! TATAACTTTATTGAGTTTAC+GGG - chr4_1:69723280-69723299 None:intergenic 20.0%
!! GTATAACTTTATTGAGTTTA+CGG - chr4_1:69723281-69723300 None:intergenic 20.0%
!! ACTCAATAAAGTTATACATA+AGG + chr4_1:69723284-69723303 Msa0568140:intron 20.0%
!! TTATGAAACTCATTTGAATT+TGG - chr4_1:69723314-69723333 None:intergenic 20.0%
!! ATATAGTAGTTAATTAGGTT+GGG - chr4_1:69723761-69723780 None:intergenic 20.0%
!!! TTATTTCTTTCAAATTTGCT+TGG + chr4_1:69723867-69723886 Msa0568140:intron 20.0%
!!! TTTGACTATTTTCTTACTTA+TGG + chr4_1:69723984-69724003 Msa0568140:intron 20.0%
!!! TTGACTATTTTCTTACTTAT+GGG + chr4_1:69723985-69724004 Msa0568140:intron 20.0%
!! AAGCATATTTGGAAAAATAT+TGG + chr4_1:69724557-69724576 Msa0568140:CDS 20.0%
!! AGCATATTTGGAAAAATATT+GGG + chr4_1:69724558-69724577 Msa0568140:CDS 20.0%
!! TACTAATCAATGCTTATATA+AGG + chr4_1:69724685-69724704 Msa0568140:CDS 20.0%
!! TATTTCAGTGTATTAGATAA+TGG + chr4_1:69725263-69725282 Msa0568140:CDS 20.0%
!! AATATACATGATTCGATTAT+AGG - chr4_1:69725714-69725733 None:intergenic 20.0%
! GAATGAATAAGAAACCAAAA+TGG - chr4_1:69722576-69722595 None:intergenic 25.0%
! AAGAATAGTAAAAGGGAAAA+AGG - chr4_1:69722703-69722722 None:intergenic 25.0%
!! AAATTTATTGTAGTTTGTGG+TGG + chr4_1:69723386-69723405 Msa0568140:intron 25.0%
! TTACATACTTTAGCAAATCA+TGG + chr4_1:69723481-69723500 Msa0568140:intron 25.0%
! AGTTAATTCTCAAATCTTTG+AGG - chr4_1:69723596-69723615 None:intergenic 25.0%
! TCTACGTTAATAAACATCTT+TGG - chr4_1:69723682-69723701 None:intergenic 25.0%
! AAGATGTTTATTAACGTAGA+AGG + chr4_1:69723682-69723701 Msa0568140:intron 25.0%
! GATATAGTAGTTAATTAGGT+TGG - chr4_1:69723762-69723781 None:intergenic 25.0%
!!! AATGATTTTACTGGCTAAAA+CGG - chr4_1:69723789-69723808 None:intergenic 25.0%
!!! TTTAAGTTCTAAAGTGCTAA+TGG + chr4_1:69724058-69724077 Msa0568140:intron 25.0%
!!! AACAAGTTGAAATTAGCTTT+TGG - chr4_1:69724121-69724140 None:intergenic 25.0%
! GTTGTAAAGCTATCATTTAA+AGG + chr4_1:69724138-69724157 Msa0568140:intron 25.0%
! TGATTAAAGGGAACATTAAA+TGG - chr4_1:69724282-69724301 None:intergenic 25.0%
! ATTTAATGTTCCCTTTAATC+AGG + chr4_1:69724281-69724300 Msa0568140:intron 25.0%
!! AATCTTTTTGCCTGATTAAA+GGG - chr4_1:69724294-69724313 None:intergenic 25.0%
! CTAGATTTGAAGAACAAATT+AGG + chr4_1:69724504-69724523 Msa0568140:CDS 25.0%
! GCATATTTGGAAAAATATTG+GGG + chr4_1:69724559-69724578 Msa0568140:CDS 25.0%
! TAATTACATACTTGATCAAC+AGG - chr4_1:69724852-69724871 None:intergenic 25.0%
! AAAAAACAATTGTCTTGAGT+TGG + chr4_1:69724932-69724951 Msa0568140:CDS 25.0%
!!! AATGTTTTTACCTGAAATAC+AGG - chr4_1:69725176-69725195 None:intergenic 25.0%
!! TTTCAGGTAAAAACATTTGA+AGG + chr4_1:69725179-69725198 Msa0568140:CDS 25.0%
!!! GAGTTATTTCAAATGAGTTT+TGG + chr4_1:69725285-69725304 Msa0568140:CDS 25.0%
! TCCAATTTGGATCATTAATT+GGG - chr4_1:69725571-69725590 None:intergenic 25.0%
! ATCCAATTTGGATCATTAAT+TGG - chr4_1:69725572-69725591 None:intergenic 25.0%
!! AATTCAGAGTGTTACCATTT+TGG + chr4_1:69722559-69722578 Msa0568140:five_prime_UTR 30.0%
CATGGAGAAGAATAGTAAAA+GGG - chr4_1:69722710-69722729 None:intergenic 30.0%
AGTAAGCTGAAAACAACTTA+TGG + chr4_1:69723178-69723197 Msa0568140:intron 30.0%
TCACTATATTATTGCACTCT+TGG - chr4_1:69723360-69723379 None:intergenic 30.0%
AGTGCAATAATATAGTGAGA+TGG + chr4_1:69723362-69723381 Msa0568140:intron 30.0%
GTGCAATAATATAGTGAGAT+GGG + chr4_1:69723363-69723382 Msa0568140:intron 30.0%
GGGAAATTTATTGTAGTTTG+TGG + chr4_1:69723383-69723402 Msa0568140:intron 30.0%
GAAGGCAATAATATAATGTG+CGG + chr4_1:69723419-69723438 Msa0568140:intron 30.0%
TTGGAATAGCATGATTCATA+GGG + chr4_1:69723510-69723529 Msa0568140:intron 30.0%
! TATGTGGGTAATGATTTTAC+TGG - chr4_1:69723798-69723817 None:intergenic 30.0%
!! TGTCATAATAGTTTTGCTAG+AGG + chr4_1:69723954-69723973 Msa0568140:intron 30.0%
!! GTCATAATAGTTTTGCTAGA+GGG + chr4_1:69723955-69723974 Msa0568140:intron 30.0%
ATTGAGAAGCTTATCCAAAA+AGG + chr4_1:69724215-69724234 Msa0568140:intron 30.0%
TCCAAAAAGGTTCATACTAA+CGG + chr4_1:69724228-69724247 Msa0568140:intron 30.0%
! CAATCTTTTTGCCTGATTAA+AGG - chr4_1:69724295-69724314 None:intergenic 30.0%
ATCAGGCAAAAAGATTGAAA+TGG + chr4_1:69724298-69724317 Msa0568140:intron 30.0%
TCAGGCAAAAAGATTGAAAT+GGG + chr4_1:69724299-69724318 Msa0568140:intron 30.0%
GATTTGAAGAACAAATTAGG+AGG + chr4_1:69724507-69724526 Msa0568140:CDS 30.0%
TGAGATTCACAATGAAGTAA+AGG + chr4_1:69724533-69724552 Msa0568140:CDS 30.0%
GAGATTCACAATGAAGTAAA+GGG + chr4_1:69724534-69724553 Msa0568140:CDS 30.0%
!!! GTCTTTGGTTTTATCTAACT+CGG - chr4_1:69724589-69724608 None:intergenic 30.0%
!! AAGTTTTTCAATACTGGAAC+TGG - chr4_1:69724711-69724730 None:intergenic 30.0%
ATTGAAAAACTTGAGAGCAA+AGG + chr4_1:69724719-69724738 Msa0568140:CDS 30.0%
TTGAAAAACTTGAGAGCAAA+GGG + chr4_1:69724720-69724739 Msa0568140:CDS 30.0%
! ATTGCAGAAGATTTGTTTGT+TGG + chr4_1:69725026-69725045 Msa0568140:CDS 30.0%
! ATTTGTTTGTTGGTTGGTTA+GGG + chr4_1:69725036-69725055 Msa0568140:CDS 30.0%
AGAATAACTGATACTGACAA+GGG - chr4_1:69725118-69725137 None:intergenic 30.0%
TAGAATAACTGATACTGACA+AGG - chr4_1:69725119-69725138 None:intergenic 30.0%
CAGTATCAGTTATTCTATAG+AGG + chr4_1:69725122-69725141 Msa0568140:CDS 30.0%
TTCTATAGAGGAAAAGCAAA+AGG + chr4_1:69725134-69725153 Msa0568140:CDS 30.0%
TCTATAGAGGAAAAGCAAAA+GGG + chr4_1:69725135-69725154 Msa0568140:CDS 30.0%
AAAAACATTTGAAGGCCAAA+TGG + chr4_1:69725187-69725206 Msa0568140:CDS 30.0%
AGAAAATATAGGGTTAAGAG+AGG + chr4_1:69725221-69725240 Msa0568140:CDS 30.0%
!!! AAATGAGTTTTGGACAATTG+TGG + chr4_1:69725295-69725314 Msa0568140:CDS 30.0%
CATTTCCAAATGAAAGAAAG+AGG + chr4_1:69725420-69725439 Msa0568140:CDS 30.0%
AGAAATGTGAAATCAAAGAG+TGG + chr4_1:69725465-69725484 Msa0568140:CDS 30.0%
GAAATGTGAAATCAAAGAGT+GGG + chr4_1:69725466-69725485 Msa0568140:CDS 30.0%
ACCCAATTAATGATCCAAAT+TGG + chr4_1:69725567-69725586 Msa0568140:CDS 30.0%
!! TTAGCAATAAGCTTGTTATC+AGG + chr4_1:69725687-69725706 Msa0568140:three_prime_UTR 30.0%
!! TAGCAATAAGCTTGTTATCA+GGG + chr4_1:69725688-69725707 Msa0568140:three_prime_UTR 30.0%
GCATGGAGAAGAATAGTAAA+AGG - chr4_1:69722711-69722730 None:intergenic 35.0%
! TTGAGTTTACGGGTATGTTT+TGG - chr4_1:69723270-69723289 None:intergenic 35.0%
GCGGATATAACAGTAAAATC+TGG + chr4_1:69723438-69723457 Msa0568140:intron 35.0%
! TAGCAAATCATGGATTGTGT+TGG + chr4_1:69723491-69723510 Msa0568140:intron 35.0%
GTTGGAATAGCATGATTCAT+AGG + chr4_1:69723509-69723528 Msa0568140:intron 35.0%
AAAATCCAAAGACATGTTGC+AGG - chr4_1:69723653-69723672 None:intergenic 35.0%
! TCCGTTAGTATGAACCTTTT+TGG - chr4_1:69724232-69724251 None:intergenic 35.0%
!! AGATTGAAATGGGTTGATGA+AGG + chr4_1:69724309-69724328 Msa0568140:CDS 35.0%
!! GATTGAAATGGGTTGATGAA+GGG + chr4_1:69724310-69724329 Msa0568140:CDS 35.0%
ATTAGATTGAATGCACTCGT+CGG - chr4_1:69724355-69724374 None:intergenic 35.0%
! GAAGTAAAGGGAAGCATATT+TGG + chr4_1:69724546-69724565 Msa0568140:CDS 35.0%
CACTACTTCATATGAGTCTT+TGG - chr4_1:69724604-69724623 None:intergenic 35.0%
!! GCTCTCAAGTTTTTCAATAC+TGG - chr4_1:69724717-69724736 None:intergenic 35.0%
AACTGTATGTTGAAGAACTG+CGG + chr4_1:69724756-69724775 Msa0568140:CDS 35.0%
TCAGGTACTTAATTGCTTGT+TGG + chr4_1:69724782-69724801 Msa0568140:CDS 35.0%
! TGAAGAGCTTTTCTACAGTT+AGG - chr4_1:69724810-69724829 None:intergenic 35.0%
! CAGAAGATTTGTTTGTTGGT+TGG + chr4_1:69725030-69725049 Msa0568140:CDS 35.0%
! GATTTGTTTGTTGGTTGGTT+AGG + chr4_1:69725035-69725054 Msa0568140:CDS 35.0%
! GAAAAGCAAAAGGGTCATTT+TGG + chr4_1:69725144-69725163 Msa0568140:CDS 35.0%
TTGGTATGAACCTGTATTTC+AGG + chr4_1:69725163-69725182 Msa0568140:CDS 35.0%
TATGGAGGAGGAGAAAATAT+AGG + chr4_1:69725210-69725229 Msa0568140:CDS 35.0%
ATGGAGGAGGAGAAAATATA+GGG + chr4_1:69725211-69725230 Msa0568140:CDS 35.0%
ATATAGGGTTAAGAGAGGTA+AGG + chr4_1:69725226-69725245 Msa0568140:CDS 35.0%
GTTAAGAGAGGTAAGGTATA+TGG + chr4_1:69725233-69725252 Msa0568140:CDS 35.0%
ATGTAGCTAATGACCTTAGT+TGG + chr4_1:69725318-69725337 Msa0568140:CDS 35.0%
TGTAGCTAATGACCTTAGTT+GGG + chr4_1:69725319-69725338 Msa0568140:CDS 35.0%
TTCGTCCTCTTTCTTTCATT+TGG - chr4_1:69725428-69725447 None:intergenic 35.0%
TGGATCATTAATTGGGTCTA+AGG - chr4_1:69725564-69725583 None:intergenic 35.0%
CTTCACACATTCATCCAATT+TGG - chr4_1:69725584-69725603 None:intergenic 35.0%
TTCAACATTCATCATAGAGC+TGG - chr4_1:69725737-69725756 None:intergenic 35.0%
TTAACAGTGGTCAAATTGAG+AGG - chr4_1:69725773-69725792 None:intergenic 35.0%
AAGATGAAGTTGCAGTTGGA+AGG - chr4_1:69722612-69722631 None:intergenic 40.0%
! TGAGTTTGAAGCACATGTGT+GGG - chr4_1:69722635-69722654 None:intergenic 40.0%
! TTGAGTTTGAAGCACATGTG+TGG - chr4_1:69722636-69722655 None:intergenic 40.0%
AGAGAGATTGAGAATGAGCA+TGG - chr4_1:69722728-69722747 None:intergenic 40.0%
AGGAAAGCAATAAGGAGTAG+TGG - chr4_1:69722762-69722781 None:intergenic 40.0%
!! GATGATGGAGGAAAGCAATA+AGG - chr4_1:69722770-69722789 None:intergenic 40.0%
TCTATACTGTAGACCCTGTT+TGG + chr4_1:69723079-69723098 Msa0568140:intron 40.0%
CATGATTCATAGGGAAACAC+AGG + chr4_1:69723519-69723538 Msa0568140:intron 40.0%
! TTCAGTAATTCTCTCTGGAG+TGG - chr4_1:69724381-69724400 None:intergenic 40.0%
ACTCCAGAGAGAATTACTGA+AGG + chr4_1:69724380-69724399 Msa0568140:CDS 40.0%
TTTCGTATGAAGCGATGCAT+CGG - chr4_1:69724875-69724894 None:intergenic 40.0%
! TTCATACGAAAGTGCGAATC+TGG + chr4_1:69724884-69724903 Msa0568140:CDS 40.0%
TTGTAACACGCAAAGCGAAA+AGG - chr4_1:69724913-69724932 None:intergenic 40.0%
! TCAACCATTGGAGGTACATA+TGG - chr4_1:69724978-69724997 None:intergenic 40.0%
CAAGGGAATTGATCATATGC+TGG - chr4_1:69725101-69725120 None:intergenic 40.0%
CATTTGAAGGCCAAATGGTA+TGG + chr4_1:69725192-69725211 Msa0568140:CDS 40.0%
GTAGCTAATGACCTTAGTTG+GGG + chr4_1:69725320-69725339 Msa0568140:CDS 40.0%
TCATTTGGAAATGCTCCATC+TGG - chr4_1:69725413-69725432 None:intergenic 40.0%
! TCATGCATTGATCCTCCATT+AGG + chr4_1:69725512-69725531 Msa0568140:CDS 40.0%
GAATGAAAACTTGAACCCTC+TGG - chr4_1:69725542-69725561 None:intergenic 40.0%
ATAGTGAGGTAAGCAGTGAG+TGG + chr4_1:69722510-69722529 Msa0568140:five_prime_UTR 45.0%
TGGGAAGATGAAGTTGCAGT+TGG - chr4_1:69722616-69722635 None:intergenic 45.0%
!! ACGGTTGTTGATGATGATGG+AGG - chr4_1:69722782-69722801 None:intergenic 45.0%
TCCATCATCATCAACAACCG+TGG + chr4_1:69722781-69722800 Msa0568140:CDS 45.0%
!! TCCACGGTTGTTGATGATGA+TGG - chr4_1:69722785-69722804 None:intergenic 45.0%
! TGTGGTGGAGAAGAAAGAGA+AGG + chr4_1:69723401-69723420 Msa0568140:intron 45.0%
TGCAACCTGCAACATGTCTT+TGG + chr4_1:69723645-69723664 Msa0568140:intron 45.0%
! AATTTGCTTGGACAGCATGC+AGG + chr4_1:69723879-69723898 Msa0568140:intron 45.0%
CAGCCTTCAGTAATTCTCTC+TGG - chr4_1:69724386-69724405 None:intergenic 45.0%
CGCTGTTACAAACGAAGAGT+CGG + chr4_1:69724422-69724441 Msa0568140:CDS 45.0%
CAAACGAAGAGTCGGTTAAC+TGG + chr4_1:69724430-69724449 Msa0568140:CDS 45.0%
TGCAAACTGTAACCGAAGCA+TGG + chr4_1:69724622-69724641 Msa0568140:CDS 45.0%
GCAAACTGTAACCGAAGCAT+GGG + chr4_1:69724623-69724642 Msa0568140:CDS 45.0%
! GACGCAGTTCTGACGATATA+CGG + chr4_1:69724649-69724668 Msa0568140:CDS 45.0%
!! GAGGTACATATGGCTTGGTA+GGG - chr4_1:69724968-69724987 None:intergenic 45.0%
! CATTGGAGGTACATATGGCT+TGG - chr4_1:69724973-69724992 None:intergenic 45.0%
CAAGCCATATGTACCTCCAA+TGG + chr4_1:69724971-69724990 Msa0568140:CDS 45.0%
CCTCCAATGGTTGAATTTCG+CGG + chr4_1:69724984-69725003 Msa0568140:CDS 45.0%
CTCCAATGGTTGAATTTCGC+GGG + chr4_1:69724985-69725004 Msa0568140:CDS 45.0%
GTTGGTTAGGGAGTTTGCAA+TGG + chr4_1:69725048-69725067 Msa0568140:CDS 45.0%
TTGAAGGCCAAATGGTATGG+AGG + chr4_1:69725195-69725214 Msa0568140:CDS 45.0%
TTCTCCTCCTCCATACCATT+TGG - chr4_1:69725205-69725224 None:intergenic 45.0%
AGTGGAACAAACCCCAACTA+AGG - chr4_1:69725334-69725353 None:intergenic 45.0%
! TGGGGTTTGTTCCACTATCA+TGG + chr4_1:69725338-69725357 Msa0568140:CDS 45.0%
CTTTAGCAGCTCCATGATAG+TGG - chr4_1:69725352-69725371 None:intergenic 45.0%
! GCAGTACTTGTTAGTCCAGA+TGG + chr4_1:69725395-69725414 Msa0568140:CDS 45.0%
CATCGTCACATCAGAGTCCA+CGG - chr4_1:69722801-69722820 None:intergenic 50.0%
ACTATAGCCACCATCCTCAC+CGG - chr4_1:69722833-69722852 None:intergenic 50.0%
! GTGAGGATGGTGGCTATAGT+TGG + chr4_1:69722833-69722852 Msa0568140:CDS 50.0%
ATGGTGGCTATAGTTGGCCA+TGG + chr4_1:69722839-69722858 Msa0568140:CDS 50.0%
CCCAAGAAGCAGAGTTGAGA+GGG - chr4_1:69722874-69722893 None:intergenic 50.0%
CCCTCTCAACTCTGCTTCTT+GGG + chr4_1:69722871-69722890 Msa0568140:CDS 50.0%
TCCCAAGAAGCAGAGTTGAG+AGG - chr4_1:69722875-69722894 None:intergenic 50.0%
!! GGAGGTACATATGGCTTGGT+AGG - chr4_1:69724969-69724988 None:intergenic 50.0%
CCGCGAAATTCAACCATTGG+AGG - chr4_1:69724987-69725006 None:intergenic 50.0%
TGCCCGCGAAATTCAACCAT+TGG - chr4_1:69724990-69725009 None:intergenic 50.0%
TAGGGAGTTTGCAATGGAGC+TGG + chr4_1:69725054-69725073 Msa0568140:CDS 50.0%
AAGGCCAAATGGTATGGAGG+AGG + chr4_1:69725198-69725217 Msa0568140:CDS 50.0%
ATGGAGCTGCTAAAGCTGCA+GGG + chr4_1:69725357-69725376 Msa0568140:CDS 50.0%
! CTGCAGGGCAGTCTTATACT+GGG + chr4_1:69725372-69725391 Msa0568140:CDS 50.0%
! TGCAGGGCAGTCTTATACTG+GGG + chr4_1:69725373-69725392 Msa0568140:CDS 50.0%
TCCTCCATTAGGAACTCCAG+AGG + chr4_1:69725523-69725542 Msa0568140:CDS 50.0%
CCTCCATTAGGAACTCCAGA+GGG + chr4_1:69725524-69725543 Msa0568140:CDS 50.0%
!! GAACCCTCTGGAGTTCCTAA+TGG - chr4_1:69725530-69725549 None:intergenic 50.0%
CGTGGACTCTGATGTGACGA+TGG + chr4_1:69722799-69722818 Msa0568140:CDS 55.0%
TGTGACGATGGATGAGCCTC+CGG + chr4_1:69722811-69722830 Msa0568140:CDS 55.0%
GCCCTCTCAACTCTGCTTCT+TGG + chr4_1:69722870-69722889 Msa0568140:CDS 55.0%
! ACTGCGTCGATCCCATGCTT+CGG - chr4_1:69724637-69724656 None:intergenic 55.0%
GTTGAAGAACTGCGGTCGTC+AGG + chr4_1:69724764-69724783 Msa0568140:CDS 55.0%
CATGGAGCTGCTAAAGCTGC+AGG + chr4_1:69725356-69725375 Msa0568140:CDS 55.0%
! GCTGCAGGGCAGTCTTATAC+TGG + chr4_1:69725371-69725390 Msa0568140:CDS 55.0%
!! CCCTCTGGAGTTCCTAATGG+AGG - chr4_1:69725527-69725546 None:intergenic 55.0%
ATAGCCACCATCCTCACCGG+AGG - chr4_1:69722830-69722849 None:intergenic 60.0%
TGAGAGGGCTGACAGCTCCA+TGG - chr4_1:69722859-69722878 None:intergenic 60.0%
ATGGAGCTGGCGCGTTGTAG+CGG + chr4_1:69725067-69725086 Msa0568140:CDS 60.0%
CGATGGATGAGCCTCCGGTG+AGG + chr4_1:69722816-69722835 Msa0568140:CDS 65.0%
GGATGAGCCTCCGGTGAGGA+TGG + chr4_1:69722820-69722839 Msa0568140:CDS 65.0%
TGAGCCTCCGGTGAGGATGG+TGG + chr4_1:69722823-69722842 Msa0568140:CDS 65.0%
TGGAGCTGGCGCGTTGTAGC+GGG + chr4_1:69725068-69725087 Msa0568140:CDS 65.0%
GGAGCTGGCGCGTTGTAGCG+GGG + chr4_1:69725069-69725088 Msa0568140:CDS 70.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 69722504 69725797 69722504 ID=Msa0568140;Name=Msa0568140
chr4_1 mRNA 69722504 69725797 69722504 ID=Msa0568140-mRNA-1;Parent=Msa0568140;Name=Msa0568140-mRNA-1;_AED=0.00;_eAED=0.00;_QI=101|1|1|1|1|1|2|196|535
chr4_1 exon 69722504 69722913 69722504 ID=Msa0568140-mRNA-1:exon:23297;Parent=Msa0568140-mRNA-1
chr4_1 exon 69724303 69725797 69724303 ID=Msa0568140-mRNA-1:exon:23298;Parent=Msa0568140-mRNA-1
chr4_1 five_prime_UTR 69722504 69722604 69722504 ID=Msa0568140-mRNA-1:five_prime_utr;Parent=Msa0568140-mRNA-1
chr4_1 CDS 69722605 69722913 69722605 ID=Msa0568140-mRNA-1:cds;Parent=Msa0568140-mRNA-1
chr4_1 CDS 69724303 69725601 69724303 ID=Msa0568140-mRNA-1:cds;Parent=Msa0568140-mRNA-1
chr4_1 three_prime_UTR 69725602 69725797 69725602 ID=Msa0568140-mRNA-1:three_prime_utr;Parent=Msa0568140-mRNA-1
Gene Sequence

>Msa0568140

ATGTCCTTCCAACTGCAACTTCATCTTCCCACACATGTGCTTCAAACTCAAACAAATAATCGTTTCTATGCTCAACACTACTTTCTCTCTTCTAACCTTTTTCCCTTTTACTATTCTTCTCCATGCTCATTCTCAATCTCTCTTTCTTCACACACCACTACTCCTTATTGCTTTCCTCCATCATCATCAACAACCGTGGACTCTGATGTGACGATGGATGAGCCTCCGGTGAGGATGGTGGCTATAGTTGGCCATGGAGCTGTCAGCCCTCTCAACTCTGCTTCTTGGGAACAAGTCATGCTTCATACTGCAAAAAGATTGAAATGGGTTGATGAAGGGTATGAACTTCTTCTATTTACCGACGAGTGCATTCAATCTAATGAACCACTCCAGAGAGAATTACTGAAGGCTGATATATTAGTGATTGTCGCTGTTACAAACGAAGAGTCGGTTAACTGGATTAAAATCAGCAGCAAAACTATTGAAAATGTAATATGCTTTGACTCTTCACTAGATTTGAAGAACAAATTAGGAGGCTATGAGATTCACAATGAAGTAAAGGGAAGCATATTTGGAAAAATATTGGGGAGTTCCGAGTTAGATAAAACCAAAGACTCATATGAAGTAGTGCAAACTGTAACCGAAGCATGGGATCGACGCAGTTCTGACGATATACGGTTCTGTTTGCTGTTACTAATCAATGCTTATATAAGGCCAGTTCCAGTATTGAAAAACTTGAGAGCAAAGGGTTTTTCAACTTTAAACTGTATGTTGAAGAACTGCGGTCGTCAGGTACTTAATTGCTTGTTGGATCCTAACTGTAGAAAAGCTCTTCAATGTCTGAATAAGTGTAGTCCTGTTGATCAAGTATGTAATTACCGATGCATCGCTTCATACGAAAGTGCGAATCTGGAAGCCTTTTCGCTTTGCGTGTTACAAAAAAACAATTGTCTTGAGTTGGAAGCAGAAGTCCCTACCAAGCCATATGTACCTCCAATGGTTGAATTTCGCGGGCAGAACTTGAGTCACGAAATTGCAGAAGATTTGTTTGTTGGTTGGTTAGGGAGTTTGCAATGGAGCTGGCGCGTTGTAGCGGGGCAGAATCCAGCATATGATCAATTCCCTTGTCAGTATCAGTTATTCTATAGAGGAAAAGCAAAAGGGTCATTTTGGTATGAACCTGTATTTCAGGTAAAAACATTTGAAGGCCAAATGGTATGGAGGAGGAGAAAATATAGGGTTAAGAGAGGTAAGGTATATGGCACATTCTATTTCAGTGTATTAGATAATGGAGTTATTTCAAATGAGTTTTGGACAATTGTGGATGTAGCTAATGACCTTAGTTGGGGTTTGTTCCACTATCATGGAGCTGCTAAAGCTGCAGGGCAGTCTTATACTGGGGCAGTACTTGTTAGTCCAGATGGAGCATTTCCAAATGAAAGAAAGAGGACGAAAATTGTTGCTGCACTAGAGAAATGTGAAATCAAAGAGTGGGAGCTTTTCTTTGTTGACAATTGTTCATGCATTGATCCTCCATTAGGAACTCCAGAGGGTTCAAGTTTTCATTCCTTAGACCCAATTAATGATCCAAATTGGATGAATGTGTGA

Protein sequence

>Msa0568140

MSFQLQLHLPTHVLQTQTNNRFYAQHYFLSSNLFPFYYSSPCSFSISLSSHTTTPYCFPPSSSTTVDSDVTMDEPPVRMVAIVGHGAVSPLNSASWEQVMLHTAKRLKWVDEGYELLLFTDECIQSNEPLQRELLKADILVIVAVTNEESVNWIKISSKTIENVICFDSSLDLKNKLGGYEIHNEVKGSIFGKILGSSELDKTKDSYEVVQTVTEAWDRRSSDDIRFCLLLLINAYIRPVPVLKNLRAKGFSTLNCMLKNCGRQVLNCLLDPNCRKALQCLNKCSPVDQVCNYRCIASYESANLEAFSLCVLQKNNCLELEAEVPTKPYVPPMVEFRGQNLSHEIAEDLFVGWLGSLQWSWRVVAGQNPAYDQFPCQYQLFYRGKAKGSFWYEPVFQVKTFEGQMVWRRRKYRVKRGKVYGTFYFSVLDNGVISNEFWTIVDVANDLSWGLFHYHGAAKAAGQSYTGAVLVSPDGAFPNERKRTKIVAALEKCEIKEWELFFVDNCSCIDPPLGTPEGSSFHSLDPINDPNWMNV*