AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1293530


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1293530 MtrunA17_Chr8g0360251 90.909 176 13 1 1 176 1 173 1.69e-107 304
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1293530 AT3G15190.1 77.876 113 23 1 60 170 75 187 6.75e-57 177

Find 65 sgRNAs with CRISPR-Local

Find 246 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACGTGCCTCCTTAATCTTAA+TGG 0.170760 8_3:+50719418 Msa1293530:three_prime_UTR
CTCTACTGCCTTCTTTCTTC+TGG 0.196704 8_3:-50719164 None:intergenic
CTCACTTTGGTACATATAAA+AGG 0.221922 8_3:-50719234 None:intergenic
ATGGCGGAATCAACCTTCTT+TGG 0.235795 8_3:-50717983 None:intergenic
AATCTTAATGGCAGTACTTT+TGG 0.260266 8_3:+50719430 Msa1293530:three_prime_UTR
CTCTAGATTGGGAAATGTTT+CGG 0.285145 8_3:-50717889 None:intergenic
TCTAGATTGGGAAATGTTTC+GGG 0.288515 8_3:-50717888 None:intergenic
TCATCATCTACATCAAATTC+TGG 0.299750 8_3:+50717851 Msa1293530:CDS
AAGTACTGCCATTAAGATTA+AGG 0.300171 8_3:-50719426 None:intergenic
TCTCTGTCTTAAATTCAAAT+TGG 0.320415 8_3:+50719304 Msa1293530:three_prime_UTR
AAATACAGTTAAGGGTAGTA+TGG 0.329261 8_3:+50717658 Msa1293530:five_prime_UTR
CTTATCCCTTCAATTTCAAT+TGG 0.340771 8_3:-50717734 None:intergenic
ATGAGGAGATTATGAAATAA+AGG 0.345001 8_3:-50717711 None:intergenic
GACTCAAGAGGGAGTGTTTA+CGG 0.350572 8_3:-50719512 None:intergenic
TTACAGTTACGGTACCTTCT+TGG 0.353552 8_3:-50718077 None:intergenic
TGGAAAAGAAATACAGTTAA+GGG 0.367102 8_3:+50717650 None:intergenic
TTGGAAAAGAAATACAGTTA+AGG 0.384353 8_3:+50717649 None:intergenic
CTTGGTACGGGTTCTAATCT+CGG 0.388971 8_3:-50718059 None:intergenic
ATGTAGATGATGATGAAGTT+AGG 0.392166 8_3:-50717841 None:intergenic
CGCCATTAAGAGAGCTCGTC+AGG 0.398567 8_3:+50718000 Msa1293530:CDS
GCCTCAATTGAGAAGATGAT+TGG 0.400874 8_3:+50719058 Msa1293530:CDS
TTTGTGAAAGGACTCTAGAT+TGG 0.409923 8_3:-50717901 None:intergenic
AATACAACAATGACTAATTA+CGG 0.433579 8_3:-50719378 None:intergenic
CCTCATCCAATTGAAATTGA+AGG 0.440955 8_3:+50717728 Msa1293530:five_prime_UTR
CAGACACTGGCTTGAGGCAC+AGG 0.442721 8_3:-50719208 None:intergenic
AAGTATGTTATCTTTGAATA+CGG 0.445037 8_3:+50717922 Msa1293530:CDS
TTGTGAAAGGACTCTAGATT+GGG 0.465252 8_3:-50717900 None:intergenic
AGCCTGACGAGCTCTCTTAA+TGG 0.465591 8_3:-50718002 None:intergenic
TGAACCTTCCTTCGAAAATG+AGG 0.476736 8_3:+50717810 Msa1293530:CDS
GTTACGGTACCTTCTTGGTA+CGG 0.485051 8_3:-50718072 None:intergenic
TTGCGAGGCTGCTCCAAAGA+AGG 0.502462 8_3:+50717970 Msa1293530:CDS
CAGGGGCATACCAGCCATGA+TGG 0.502689 8_3:-50719189 None:intergenic
TCCAATCATCTTCTCAATTG+AGG 0.507360 8_3:-50719059 None:intergenic
TTACGGTACCTTCTTGGTAC+GGG 0.515322 8_3:-50718071 None:intergenic
CCTTCAATTTCAATTGGATG+AGG 0.519784 8_3:-50717728 None:intergenic
GAGATGCTGTAAACATCAAA+GGG 0.521125 8_3:-50719356 None:intergenic
CTCATCCAATTGAAATTGAA+GGG 0.535516 8_3:+50717729 Msa1293530:five_prime_UTR
AAGATAACATACTTTGTGAA+AGG 0.537219 8_3:-50717913 None:intergenic
TGTGCGTTAAGTTCTCACTT+TGG 0.540079 8_3:-50719247 None:intergenic
AATCGACAAAGCAGTGAAAG+TGG 0.542695 8_3:+50719096 Msa1293530:CDS
CAGTAGAGATCCATCATGGC+TGG 0.548246 8_3:+50719179 Msa1293530:CDS
GGAGATGCTGTAAACATCAA+AGG 0.551688 8_3:-50719357 None:intergenic
TGTAGATGATGATGAAGTTA+GGG 0.553903 8_3:-50717840 None:intergenic
TCGGCTTGCCAGAAGAAAGA+AGG 0.559181 8_3:+50719156 Msa1293530:CDS
CAGGAGCAAATCGCAAGTCT+CGG 0.565582 8_3:+50719137 Msa1293530:CDS
ATGATGATGAAGTTAGGGTA+AGG 0.568156 8_3:-50717835 None:intergenic
TTCGTAAATGTGACTCAAGA+GGG 0.579867 8_3:-50719523 None:intergenic
AGACACTGGCTTGAGGCACA+GGG 0.582207 8_3:-50719207 None:intergenic
ATATAAAAGGATTCAGACAC+TGG 0.591833 8_3:-50719221 None:intergenic
AGAGAGCTCGTCAGGCTGAG+AGG 0.604628 8_3:+50718008 Msa1293530:CDS
GATTAGAACCCGTACCAAGA+AGG 0.607531 8_3:+50718063 Msa1293530:CDS
ATCGACAAAGCAGTGAAAGT+GGG 0.608479 8_3:+50719097 Msa1293530:CDS
ATTCGTAAATGTGACTCAAG+AGG 0.615486 8_3:-50719524 None:intergenic
ATGGAGATTATCTTACTCGT+CGG 0.621496 8_3:+50717677 Msa1293530:five_prime_UTR
TTGAATACGGTGCAGAAGCG+TGG 0.643767 8_3:+50717935 Msa1293530:CDS
AAGGCAGTAGAGATCCATCA+TGG 0.646488 8_3:+50719175 Msa1293530:CDS
TGGTGTTGTTGTTGTTTGCG+AGG 0.647337 8_3:+50717955 Msa1293530:CDS
GGAACTTTGCATAGAAACAC+AGG 0.653414 8_3:+50719118 Msa1293530:CDS
TGTTTACGGCATGACTGATG+TGG 0.653475 8_3:-50719498 None:intergenic
AGGATTCAGACACTGGCTTG+AGG 0.656971 8_3:-50719214 None:intergenic
AATTGAGAAGATGATTGGAG+AGG 0.673219 8_3:+50719063 Msa1293530:CDS
TACTGCCATTAAGATTAAGG+AGG 0.673307 8_3:-50719423 None:intergenic
CTGACGAGCTCTCTTAATGG+CGG 0.689854 8_3:-50717999 None:intergenic
GACACTGGCTTGAGGCACAG+GGG 0.714773 8_3:-50719206 None:intergenic
GTTTACGGCATGACTGATGT+GGG 0.715569 8_3:-50719497 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCATTTTCTCAAATTATTAT+TGG + chr8_3:50718140-50718159 Msa1293530:intron 15.0%
!!! TCATTTTCTCAAATTATTAT+TGG + chr8_3:50718140-50718159 Msa1293530:intron 15.0%
!! AAGTATGTTATCTTTGAATA+CGG + chr8_3:50717922-50717941 Msa1293530:CDS 20.0%
!!! ACATGATTTGTATGTATTTT+AGG + chr8_3:50718384-50718403 Msa1293530:intron 20.0%
!! TTATATGAGTTACACATTAT+GGG - chr8_3:50718474-50718493 None:intergenic 20.0%
!!! ATTGATAATATGCAAGAAAA+GGG + chr8_3:50718516-50718535 Msa1293530:intron 20.0%
!! AATACAACAATGACTAATTA+CGG - chr8_3:50719381-50719400 None:intergenic 20.0%
!! AAGTATGTTATCTTTGAATA+CGG + chr8_3:50717922-50717941 Msa1293530:CDS 20.0%
!!! ACATGATTTGTATGTATTTT+AGG + chr8_3:50718384-50718403 Msa1293530:intron 20.0%
!! TTATATGAGTTACACATTAT+GGG - chr8_3:50718474-50718493 None:intergenic 20.0%
!!! ATTGATAATATGCAAGAAAA+GGG + chr8_3:50718516-50718535 Msa1293530:intron 20.0%
!! AATACAACAATGACTAATTA+CGG - chr8_3:50719381-50719400 None:intergenic 20.0%
! ATGAGGAGATTATGAAATAA+AGG - chr8_3:50717714-50717733 None:intergenic 25.0%
! AAGATAACATACTTTGTGAA+AGG - chr8_3:50717916-50717935 None:intergenic 25.0%
!! AAAAGTTCAAGTTACAGTTA+CGG - chr8_3:50718091-50718110 None:intergenic 25.0%
! TCTCAAATTATTATTGGTGT+CGG + chr8_3:50718146-50718165 Msa1293530:intron 25.0%
!! AAGTTATGGAATCAATTTTG+AGG - chr8_3:50718272-50718291 None:intergenic 25.0%
!! AAATTGATTCCATAACTTCA+TGG + chr8_3:50718274-50718293 Msa1293530:intron 25.0%
! TAATTATATAACTTGAGCGA+AGG - chr8_3:50718330-50718349 None:intergenic 25.0%
!!! TGTTTTCAAGATGAAATTGA+GGG - chr8_3:50718367-50718386 None:intergenic 25.0%
!!! ATGTTTTCAAGATGAAATTG+AGG - chr8_3:50718368-50718387 None:intergenic 25.0%
!!! TTGTGTTCTTGTTTTTGTTA+TGG + chr8_3:50718422-50718441 Msa1293530:intron 25.0%
! GTTATATGAGTTACACATTA+TGG - chr8_3:50718475-50718494 None:intergenic 25.0%
!! CTTTTCTTGCATATTATCAA+TGG - chr8_3:50718517-50718536 None:intergenic 25.0%
!! CATTGATAATATGCAAGAAA+AGG + chr8_3:50718515-50718534 Msa1293530:intron 25.0%
! TAGATGATAATATGAGAGTA+TGG + chr8_3:50718561-50718580 Msa1293530:intron 25.0%
!! AGATGATAATATGAGAGTAT+GGG + chr8_3:50718562-50718581 Msa1293530:intron 25.0%
! TGACAATTCAACAGTTTAAT+AGG + chr8_3:50718680-50718699 Msa1293530:intron 25.0%
! CAGAAATTAGAACTAAAACA+TGG - chr8_3:50718714-50718733 None:intergenic 25.0%
! TCTCTGTCTTAAATTCAAAT+TGG + chr8_3:50719304-50719323 Msa1293530:three_prime_UTR 25.0%
! ATGAGGAGATTATGAAATAA+AGG - chr8_3:50717714-50717733 None:intergenic 25.0%
! AAGATAACATACTTTGTGAA+AGG - chr8_3:50717916-50717935 None:intergenic 25.0%
!! AAAAGTTCAAGTTACAGTTA+CGG - chr8_3:50718091-50718110 None:intergenic 25.0%
! TCTCAAATTATTATTGGTGT+CGG + chr8_3:50718146-50718165 Msa1293530:intron 25.0%
!! AAGTTATGGAATCAATTTTG+AGG - chr8_3:50718272-50718291 None:intergenic 25.0%
!! AAATTGATTCCATAACTTCA+TGG + chr8_3:50718274-50718293 Msa1293530:intron 25.0%
! TAATTATATAACTTGAGCGA+AGG - chr8_3:50718330-50718349 None:intergenic 25.0%
!!! TGTTTTCAAGATGAAATTGA+GGG - chr8_3:50718367-50718386 None:intergenic 25.0%
!!! ATGTTTTCAAGATGAAATTG+AGG - chr8_3:50718368-50718387 None:intergenic 25.0%
!!! TTGTGTTCTTGTTTTTGTTA+TGG + chr8_3:50718422-50718441 Msa1293530:intron 25.0%
! GTTATATGAGTTACACATTA+TGG - chr8_3:50718475-50718494 None:intergenic 25.0%
!! CTTTTCTTGCATATTATCAA+TGG - chr8_3:50718517-50718536 None:intergenic 25.0%
!! CATTGATAATATGCAAGAAA+AGG + chr8_3:50718515-50718534 Msa1293530:intron 25.0%
! TAGATGATAATATGAGAGTA+TGG + chr8_3:50718561-50718580 Msa1293530:intron 25.0%
!! AGATGATAATATGAGAGTAT+GGG + chr8_3:50718562-50718581 Msa1293530:intron 25.0%
! TGACAATTCAACAGTTTAAT+AGG + chr8_3:50718680-50718699 Msa1293530:intron 25.0%
! CAGAAATTAGAACTAAAACA+TGG - chr8_3:50718714-50718733 None:intergenic 25.0%
! TCTCTGTCTTAAATTCAAAT+TGG + chr8_3:50719304-50719323 Msa1293530:three_prime_UTR 25.0%
AAATACAGTTAAGGGTAGTA+TGG + chr8_3:50717658-50717677 Msa1293530:five_prime_UTR 30.0%
CTCATCCAATTGAAATTGAA+GGG + chr8_3:50717729-50717748 Msa1293530:five_prime_UTR 30.0%
CTTATCCCTTCAATTTCAAT+TGG - chr8_3:50717737-50717756 None:intergenic 30.0%
! TGTAGATGATGATGAAGTTA+GGG - chr8_3:50717843-50717862 None:intergenic 30.0%
! ATGTAGATGATGATGAAGTT+AGG - chr8_3:50717844-50717863 None:intergenic 30.0%
TCATCATCTACATCAAATTC+TGG + chr8_3:50717851-50717870 Msa1293530:CDS 30.0%
! ATAACTTGCCTTGAGAAATT+TGG + chr8_3:50718490-50718509 Msa1293530:intron 30.0%
! AATATGAGAGTATGGGATAA+TGG + chr8_3:50718569-50718588 Msa1293530:intron 30.0%
! ATATGAGAGTATGGGATAAT+GGG + chr8_3:50718570-50718589 Msa1293530:intron 30.0%
AAAAGCAAGCATTATGTACA+AGG - chr8_3:50718793-50718812 None:intergenic 30.0%
AATTTAAAAATGCGTTCACC+TGG + chr8_3:50718843-50718862 Msa1293530:intron 30.0%
TCTTACAATCAATTGTCTGT+AGG + chr8_3:50718979-50718998 Msa1293530:intron 30.0%
! AATCAATTGTCTGTAGGTTT+TGG + chr8_3:50718985-50719004 Msa1293530:intron 30.0%
ATATAAAAGGATTCAGACAC+TGG - chr8_3:50719224-50719243 None:intergenic 30.0%
CTCACTTTGGTACATATAAA+AGG - chr8_3:50719237-50719256 None:intergenic 30.0%
! AAGTACTGCCATTAAGATTA+AGG - chr8_3:50719429-50719448 None:intergenic 30.0%
! AATCTTAATGGCAGTACTTT+TGG + chr8_3:50719430-50719449 Msa1293530:three_prime_UTR 30.0%
AAATACAGTTAAGGGTAGTA+TGG + chr8_3:50717658-50717677 Msa1293530:five_prime_UTR 30.0%
CTCATCCAATTGAAATTGAA+GGG + chr8_3:50717729-50717748 Msa1293530:five_prime_UTR 30.0%
CTTATCCCTTCAATTTCAAT+TGG - chr8_3:50717737-50717756 None:intergenic 30.0%
! TGTAGATGATGATGAAGTTA+GGG - chr8_3:50717843-50717862 None:intergenic 30.0%
! ATGTAGATGATGATGAAGTT+AGG - chr8_3:50717844-50717863 None:intergenic 30.0%
TCATCATCTACATCAAATTC+TGG + chr8_3:50717851-50717870 Msa1293530:CDS 30.0%
! ATAACTTGCCTTGAGAAATT+TGG + chr8_3:50718490-50718509 Msa1293530:intron 30.0%
! AATATGAGAGTATGGGATAA+TGG + chr8_3:50718569-50718588 Msa1293530:intron 30.0%
! ATATGAGAGTATGGGATAAT+GGG + chr8_3:50718570-50718589 Msa1293530:intron 30.0%
AAAAGCAAGCATTATGTACA+AGG - chr8_3:50718793-50718812 None:intergenic 30.0%
AATTTAAAAATGCGTTCACC+TGG + chr8_3:50718843-50718862 Msa1293530:intron 30.0%
TCTTACAATCAATTGTCTGT+AGG + chr8_3:50718979-50718998 Msa1293530:intron 30.0%
! AATCAATTGTCTGTAGGTTT+TGG + chr8_3:50718985-50719004 Msa1293530:intron 30.0%
ATATAAAAGGATTCAGACAC+TGG - chr8_3:50719224-50719243 None:intergenic 30.0%
CTCACTTTGGTACATATAAA+AGG - chr8_3:50719237-50719256 None:intergenic 30.0%
! AAGTACTGCCATTAAGATTA+AGG - chr8_3:50719429-50719448 None:intergenic 30.0%
! AATCTTAATGGCAGTACTTT+TGG + chr8_3:50719430-50719449 Msa1293530:three_prime_UTR 30.0%
ATGGAGATTATCTTACTCGT+CGG + chr8_3:50717677-50717696 Msa1293530:five_prime_UTR 35.0%
CCTTCAATTTCAATTGGATG+AGG - chr8_3:50717731-50717750 None:intergenic 35.0%
CCTCATCCAATTGAAATTGA+AGG + chr8_3:50717728-50717747 Msa1293530:five_prime_UTR 35.0%
! ATGATGATGAAGTTAGGGTA+AGG - chr8_3:50717838-50717857 None:intergenic 35.0%
TCTAGATTGGGAAATGTTTC+GGG - chr8_3:50717891-50717910 None:intergenic 35.0%
CTCTAGATTGGGAAATGTTT+CGG - chr8_3:50717892-50717911 None:intergenic 35.0%
TTGTGAAAGGACTCTAGATT+GGG - chr8_3:50717903-50717922 None:intergenic 35.0%
TTTGTGAAAGGACTCTAGAT+TGG - chr8_3:50717904-50717923 None:intergenic 35.0%
ACGCTTAAAACCATGTTATC+CGG - chr8_3:50718222-50718241 None:intergenic 35.0%
!! TCCATAACTTCATGGATTAG+AGG + chr8_3:50718282-50718301 Msa1293530:intron 35.0%
!! CCATAACTTCATGGATTAGA+GGG + chr8_3:50718283-50718302 Msa1293530:intron 35.0%
AAAACAAGAACACAACTCCT+GGG - chr8_3:50718417-50718436 None:intergenic 35.0%
AAAAACAAGAACACAACTCC+TGG - chr8_3:50718418-50718437 None:intergenic 35.0%
TCAATGGTCCAAATTTCTCA+AGG - chr8_3:50718501-50718520 None:intergenic 35.0%
AGGGATTCTAATTGTTTGTG+GGG - chr8_3:50718881-50718900 None:intergenic 35.0%
CAGGGATTCTAATTGTTTGT+GGG - chr8_3:50718882-50718901 None:intergenic 35.0%
TCAGGGATTCTAATTGTTTG+TGG - chr8_3:50718883-50718902 None:intergenic 35.0%
AACAATTAGAATCCCTGACA+TGG + chr8_3:50718885-50718904 Msa1293530:intron 35.0%
GTAGCTGATGTTATAATTGC+AGG + chr8_3:50718914-50718933 Msa1293530:intron 35.0%
TCCAATCATCTTCTCAATTG+AGG - chr8_3:50719062-50719081 None:intergenic 35.0%
AATTGAGAAGATGATTGGAG+AGG + chr8_3:50719063-50719082 Msa1293530:CDS 35.0%
GAGATGCTGTAAACATCAAA+GGG - chr8_3:50719359-50719378 None:intergenic 35.0%
TACTGCCATTAAGATTAAGG+AGG - chr8_3:50719426-50719445 None:intergenic 35.0%
ATGGAGATTATCTTACTCGT+CGG + chr8_3:50717677-50717696 Msa1293530:five_prime_UTR 35.0%
CCTTCAATTTCAATTGGATG+AGG - chr8_3:50717731-50717750 None:intergenic 35.0%
CCTCATCCAATTGAAATTGA+AGG + chr8_3:50717728-50717747 Msa1293530:five_prime_UTR 35.0%
! ATGATGATGAAGTTAGGGTA+AGG - chr8_3:50717838-50717857 None:intergenic 35.0%
TCTAGATTGGGAAATGTTTC+GGG - chr8_3:50717891-50717910 None:intergenic 35.0%
CTCTAGATTGGGAAATGTTT+CGG - chr8_3:50717892-50717911 None:intergenic 35.0%
TTGTGAAAGGACTCTAGATT+GGG - chr8_3:50717903-50717922 None:intergenic 35.0%
TTTGTGAAAGGACTCTAGAT+TGG - chr8_3:50717904-50717923 None:intergenic 35.0%
ACGCTTAAAACCATGTTATC+CGG - chr8_3:50718222-50718241 None:intergenic 35.0%
!! TCCATAACTTCATGGATTAG+AGG + chr8_3:50718282-50718301 Msa1293530:intron 35.0%
!! CCATAACTTCATGGATTAGA+GGG + chr8_3:50718283-50718302 Msa1293530:intron 35.0%
AAAACAAGAACACAACTCCT+GGG - chr8_3:50718417-50718436 None:intergenic 35.0%
AAAAACAAGAACACAACTCC+TGG - chr8_3:50718418-50718437 None:intergenic 35.0%
TCAATGGTCCAAATTTCTCA+AGG - chr8_3:50718501-50718520 None:intergenic 35.0%
AGGGATTCTAATTGTTTGTG+GGG - chr8_3:50718881-50718900 None:intergenic 35.0%
CAGGGATTCTAATTGTTTGT+GGG - chr8_3:50718882-50718901 None:intergenic 35.0%
TCAGGGATTCTAATTGTTTG+TGG - chr8_3:50718883-50718902 None:intergenic 35.0%
AACAATTAGAATCCCTGACA+TGG + chr8_3:50718885-50718904 Msa1293530:intron 35.0%
GTAGCTGATGTTATAATTGC+AGG + chr8_3:50718914-50718933 Msa1293530:intron 35.0%
TCCAATCATCTTCTCAATTG+AGG - chr8_3:50719062-50719081 None:intergenic 35.0%
AATTGAGAAGATGATTGGAG+AGG + chr8_3:50719063-50719082 Msa1293530:CDS 35.0%
GAGATGCTGTAAACATCAAA+GGG - chr8_3:50719359-50719378 None:intergenic 35.0%
TACTGCCATTAAGATTAAGG+AGG - chr8_3:50719426-50719445 None:intergenic 35.0%
TGAACCTTCCTTCGAAAATG+AGG + chr8_3:50717810-50717829 Msa1293530:CDS 40.0%
! GTAAGGTTCCTCATTTTCGA+AGG - chr8_3:50717821-50717840 None:intergenic 40.0%
TTACAGTTACGGTACCTTCT+TGG - chr8_3:50718080-50718099 None:intergenic 40.0%
!! TATTATTGGTGTCGGCATGT+TGG + chr8_3:50718154-50718173 Msa1293530:intron 40.0%
CCCTCTAATCCATGAAGTTA+TGG - chr8_3:50718286-50718305 None:intergenic 40.0%
AGAGGGAAGTTTGAGTAACA+TGG + chr8_3:50718300-50718319 Msa1293530:intron 40.0%
ATGAAATTGAGGGACGACAA+TGG - chr8_3:50718357-50718376 None:intergenic 40.0%
!! TGGGATAATGGGAGAGAAAA+TGG + chr8_3:50718581-50718600 Msa1293530:intron 40.0%
TGTTTCAAATTACTGAGCCC+TGG + chr8_3:50718635-50718654 Msa1293530:intron 40.0%
GTTTGATGTTTCCAGTACCA+GGG - chr8_3:50718655-50718674 None:intergenic 40.0%
TGTTTGATGTTTCCAGTACC+AGG - chr8_3:50718656-50718675 None:intergenic 40.0%
!!! GTGGGGTTTTATTATCTTCC+AGG - chr8_3:50718864-50718883 None:intergenic 40.0%
GCCTCAATTGAGAAGATGAT+TGG + chr8_3:50719058-50719077 Msa1293530:CDS 40.0%
AATCGACAAAGCAGTGAAAG+TGG + chr8_3:50719096-50719115 Msa1293530:CDS 40.0%
ATCGACAAAGCAGTGAAAGT+GGG + chr8_3:50719097-50719116 Msa1293530:CDS 40.0%
GGAACTTTGCATAGAAACAC+AGG + chr8_3:50719118-50719137 Msa1293530:CDS 40.0%
TGTGCGTTAAGTTCTCACTT+TGG - chr8_3:50719250-50719269 None:intergenic 40.0%
GGAGATGCTGTAAACATCAA+AGG - chr8_3:50719360-50719379 None:intergenic 40.0%
ACGTGCCTCCTTAATCTTAA+TGG + chr8_3:50719418-50719437 Msa1293530:three_prime_UTR 40.0%
TGAACCTTCCTTCGAAAATG+AGG + chr8_3:50717810-50717829 Msa1293530:CDS 40.0%
! GTAAGGTTCCTCATTTTCGA+AGG - chr8_3:50717821-50717840 None:intergenic 40.0%
TTACAGTTACGGTACCTTCT+TGG - chr8_3:50718080-50718099 None:intergenic 40.0%
!! TATTATTGGTGTCGGCATGT+TGG + chr8_3:50718154-50718173 Msa1293530:intron 40.0%
CCCTCTAATCCATGAAGTTA+TGG - chr8_3:50718286-50718305 None:intergenic 40.0%
AGAGGGAAGTTTGAGTAACA+TGG + chr8_3:50718300-50718319 Msa1293530:intron 40.0%
ATGAAATTGAGGGACGACAA+TGG - chr8_3:50718357-50718376 None:intergenic 40.0%
!! TGGGATAATGGGAGAGAAAA+TGG + chr8_3:50718581-50718600 Msa1293530:intron 40.0%
TGTTTCAAATTACTGAGCCC+TGG + chr8_3:50718635-50718654 Msa1293530:intron 40.0%
GTTTGATGTTTCCAGTACCA+GGG - chr8_3:50718655-50718674 None:intergenic 40.0%
TGTTTGATGTTTCCAGTACC+AGG - chr8_3:50718656-50718675 None:intergenic 40.0%
!!! GTGGGGTTTTATTATCTTCC+AGG - chr8_3:50718864-50718883 None:intergenic 40.0%
GCCTCAATTGAGAAGATGAT+TGG + chr8_3:50719058-50719077 Msa1293530:CDS 40.0%
AATCGACAAAGCAGTGAAAG+TGG + chr8_3:50719096-50719115 Msa1293530:CDS 40.0%
ATCGACAAAGCAGTGAAAGT+GGG + chr8_3:50719097-50719116 Msa1293530:CDS 40.0%
GGAACTTTGCATAGAAACAC+AGG + chr8_3:50719118-50719137 Msa1293530:CDS 40.0%
TGTGCGTTAAGTTCTCACTT+TGG - chr8_3:50719250-50719269 None:intergenic 40.0%
GGAGATGCTGTAAACATCAA+AGG - chr8_3:50719360-50719379 None:intergenic 40.0%
ACGTGCCTCCTTAATCTTAA+TGG + chr8_3:50719418-50719437 Msa1293530:three_prime_UTR 40.0%
GAGAGAAAGAGAGAGAGAGA+TGG + chr8_3:50717766-50717785 Msa1293530:exon 45.0%
! GGTTCCTCATTTTCGAAGGA+AGG - chr8_3:50717817-50717836 None:intergenic 45.0%
!! TGGTGTTGTTGTTGTTTGCG+AGG + chr8_3:50717955-50717974 Msa1293530:CDS 45.0%
! ATGGCGGAATCAACCTTCTT+TGG - chr8_3:50717986-50718005 None:intergenic 45.0%
! CTTGGTACGGGTTCTAATCT+CGG - chr8_3:50718062-50718081 None:intergenic 45.0%
GATTAGAACCCGTACCAAGA+AGG + chr8_3:50718063-50718082 Msa1293530:CDS 45.0%
TTACGGTACCTTCTTGGTAC+GGG - chr8_3:50718074-50718093 None:intergenic 45.0%
GTTACGGTACCTTCTTGGTA+CGG - chr8_3:50718075-50718094 None:intergenic 45.0%
!! GTATTTTAGGTGTCAGACCC+AGG + chr8_3:50718397-50718416 Msa1293530:intron 45.0%
AAATTACTGAGCCCTGGTAC+TGG + chr8_3:50718641-50718660 Msa1293530:intron 45.0%
AGAATCCCTGACATGGTACA+CGG + chr8_3:50718892-50718911 Msa1293530:intron 45.0%
!!! TCTGTAGGTTTTGGAAGCAC+TGG + chr8_3:50718994-50719013 Msa1293530:intron 45.0%
CTCTACTGCCTTCTTTCTTC+TGG - chr8_3:50719167-50719186 None:intergenic 45.0%
AAGGCAGTAGAGATCCATCA+TGG + chr8_3:50719175-50719194 Msa1293530:CDS 45.0%
GTTTACGGCATGACTGATGT+GGG - chr8_3:50719500-50719519 None:intergenic 45.0%
TGTTTACGGCATGACTGATG+TGG - chr8_3:50719501-50719520 None:intergenic 45.0%
!! GACTCAAGAGGGAGTGTTTA+CGG - chr8_3:50719515-50719534 None:intergenic 45.0%
GAGAGAAAGAGAGAGAGAGA+TGG + chr8_3:50717766-50717785 Msa1293530:exon 45.0%
! GGTTCCTCATTTTCGAAGGA+AGG - chr8_3:50717817-50717836 None:intergenic 45.0%
!! TGGTGTTGTTGTTGTTTGCG+AGG + chr8_3:50717955-50717974 Msa1293530:CDS 45.0%
! ATGGCGGAATCAACCTTCTT+TGG - chr8_3:50717986-50718005 None:intergenic 45.0%
! CTTGGTACGGGTTCTAATCT+CGG - chr8_3:50718062-50718081 None:intergenic 45.0%
GATTAGAACCCGTACCAAGA+AGG + chr8_3:50718063-50718082 Msa1293530:CDS 45.0%
TTACGGTACCTTCTTGGTAC+GGG - chr8_3:50718074-50718093 None:intergenic 45.0%
GTTACGGTACCTTCTTGGTA+CGG - chr8_3:50718075-50718094 None:intergenic 45.0%
!! GTATTTTAGGTGTCAGACCC+AGG + chr8_3:50718397-50718416 Msa1293530:intron 45.0%
AAATTACTGAGCCCTGGTAC+TGG + chr8_3:50718641-50718660 Msa1293530:intron 45.0%
AGAATCCCTGACATGGTACA+CGG + chr8_3:50718892-50718911 Msa1293530:intron 45.0%
!!! TCTGTAGGTTTTGGAAGCAC+TGG + chr8_3:50718994-50719013 Msa1293530:intron 45.0%
CTCTACTGCCTTCTTTCTTC+TGG - chr8_3:50719167-50719186 None:intergenic 45.0%
AAGGCAGTAGAGATCCATCA+TGG + chr8_3:50719175-50719194 Msa1293530:CDS 45.0%
GTTTACGGCATGACTGATGT+GGG - chr8_3:50719500-50719519 None:intergenic 45.0%
TGTTTACGGCATGACTGATG+TGG - chr8_3:50719501-50719520 None:intergenic 45.0%
!! GACTCAAGAGGGAGTGTTTA+CGG - chr8_3:50719515-50719534 None:intergenic 45.0%
TTGAATACGGTGCAGAAGCG+TGG + chr8_3:50717935-50717954 Msa1293530:CDS 50.0%
CTGACGAGCTCTCTTAATGG+CGG - chr8_3:50718002-50718021 None:intergenic 50.0%
AGCCTGACGAGCTCTCTTAA+TGG - chr8_3:50718005-50718024 None:intergenic 50.0%
TGTGTCTGTGCCGGATAACA+TGG + chr8_3:50718209-50718228 Msa1293530:intron 50.0%
AGCTACCGTGTACCATGTCA+GGG - chr8_3:50718900-50718919 None:intergenic 50.0%
CAGGAGCAAATCGCAAGTCT+CGG + chr8_3:50719137-50719156 Msa1293530:CDS 50.0%
! TCGGCTTGCCAGAAGAAAGA+AGG + chr8_3:50719156-50719175 Msa1293530:CDS 50.0%
CAGTAGAGATCCATCATGGC+TGG + chr8_3:50719179-50719198 Msa1293530:CDS 50.0%
!! AGGATTCAGACACTGGCTTG+AGG - chr8_3:50719217-50719236 None:intergenic 50.0%
TTGAATACGGTGCAGAAGCG+TGG + chr8_3:50717935-50717954 Msa1293530:CDS 50.0%
CTGACGAGCTCTCTTAATGG+CGG - chr8_3:50718002-50718021 None:intergenic 50.0%
AGCCTGACGAGCTCTCTTAA+TGG - chr8_3:50718005-50718024 None:intergenic 50.0%
TGTGTCTGTGCCGGATAACA+TGG + chr8_3:50718209-50718228 Msa1293530:intron 50.0%
AGCTACCGTGTACCATGTCA+GGG - chr8_3:50718900-50718919 None:intergenic 50.0%
CAGGAGCAAATCGCAAGTCT+CGG + chr8_3:50719137-50719156 Msa1293530:CDS 50.0%
! TCGGCTTGCCAGAAGAAAGA+AGG + chr8_3:50719156-50719175 Msa1293530:CDS 50.0%
CAGTAGAGATCCATCATGGC+TGG + chr8_3:50719179-50719198 Msa1293530:CDS 50.0%
!! AGGATTCAGACACTGGCTTG+AGG - chr8_3:50719217-50719236 None:intergenic 50.0%
TTGCGAGGCTGCTCCAAAGA+AGG + chr8_3:50717970-50717989 Msa1293530:CDS 55.0%
CGCCATTAAGAGAGCTCGTC+AGG + chr8_3:50718000-50718019 Msa1293530:CDS 55.0%
!! TGGTGTCGGCATGTTGGTGT+TGG + chr8_3:50718160-50718179 Msa1293530:intron 55.0%
!! GTCGGCATGTTGGTGTTGGT+TGG + chr8_3:50718164-50718183 Msa1293530:intron 55.0%
!! GTTGGTGCCAGTGTTGTGTC+CGG + chr8_3:50718182-50718201 Msa1293530:intron 55.0%
ACAGACACCGGACACAACAC+TGG - chr8_3:50718192-50718211 None:intergenic 55.0%
CAGCTACCGTGTACCATGTC+AGG - chr8_3:50718901-50718920 None:intergenic 55.0%
!! AGACACTGGCTTGAGGCACA+GGG - chr8_3:50719210-50719229 None:intergenic 55.0%
TTGCGAGGCTGCTCCAAAGA+AGG + chr8_3:50717970-50717989 Msa1293530:CDS 55.0%
CGCCATTAAGAGAGCTCGTC+AGG + chr8_3:50718000-50718019 Msa1293530:CDS 55.0%
!! TGGTGTCGGCATGTTGGTGT+TGG + chr8_3:50718160-50718179 Msa1293530:intron 55.0%
!! GTCGGCATGTTGGTGTTGGT+TGG + chr8_3:50718164-50718183 Msa1293530:intron 55.0%
!! GTTGGTGCCAGTGTTGTGTC+CGG + chr8_3:50718182-50718201 Msa1293530:intron 55.0%
ACAGACACCGGACACAACAC+TGG - chr8_3:50718192-50718211 None:intergenic 55.0%
CAGCTACCGTGTACCATGTC+AGG - chr8_3:50718901-50718920 None:intergenic 55.0%
!! AGACACTGGCTTGAGGCACA+GGG - chr8_3:50719210-50719229 None:intergenic 55.0%
AGAGAGCTCGTCAGGCTGAG+AGG + chr8_3:50718008-50718027 Msa1293530:CDS 60.0%
TCCGGTGTCTGTGTCTGTGC+CGG + chr8_3:50718200-50718219 Msa1293530:intron 60.0%
TCCGGCACAGACACAGACAC+CGG - chr8_3:50718204-50718223 None:intergenic 60.0%
! CAGGGGCATACCAGCCATGA+TGG - chr8_3:50719192-50719211 None:intergenic 60.0%
!! GACACTGGCTTGAGGCACAG+GGG - chr8_3:50719209-50719228 None:intergenic 60.0%
!! CAGACACTGGCTTGAGGCAC+AGG - chr8_3:50719211-50719230 None:intergenic 60.0%
AGAGAGCTCGTCAGGCTGAG+AGG + chr8_3:50718008-50718027 Msa1293530:CDS 60.0%
TCCGGTGTCTGTGTCTGTGC+CGG + chr8_3:50718200-50718219 Msa1293530:intron 60.0%
TCCGGCACAGACACAGACAC+CGG - chr8_3:50718204-50718223 None:intergenic 60.0%
! CAGGGGCATACCAGCCATGA+TGG - chr8_3:50719192-50719211 None:intergenic 60.0%
!! GACACTGGCTTGAGGCACAG+GGG - chr8_3:50719209-50719228 None:intergenic 60.0%
!! CAGACACTGGCTTGAGGCAC+AGG - chr8_3:50719211-50719230 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 50717655 50719535 50717655 ID=Msa1293530;Name=Msa1293530
chr8_3 mRNA 50717655 50719535 50717655 ID=Msa1293530-mRNA-1;Parent=Msa1293530;Name=Msa1293530-mRNA-1;_AED=0.00;_eAED=0.00;_QI=130|1|1|1|1|1|2|304|176
chr8_3 exon 50717655 50718084 50717655 ID=Msa1293530-mRNA-1:exon:14132;Parent=Msa1293530-mRNA-1
chr8_3 exon 50719001 50719535 50719001 ID=Msa1293530-mRNA-1:exon:14133;Parent=Msa1293530-mRNA-1
chr8_3 five_prime_UTR 50717655 50717784 50717655 ID=Msa1293530-mRNA-1:five_prime_utr;Parent=Msa1293530-mRNA-1
chr8_3 CDS 50717785 50718084 50717785 ID=Msa1293530-mRNA-1:cds;Parent=Msa1293530-mRNA-1
chr8_3 CDS 50719001 50719231 50719001 ID=Msa1293530-mRNA-1:cds;Parent=Msa1293530-mRNA-1
chr8_3 three_prime_UTR 50719232 50719535 50719232 ID=Msa1293530-mRNA-1:three_prime_utr;Parent=Msa1293530-mRNA-1
Gene Sequence

>Msa1293530

ATGGCTTCAGTTTCATGTTCATTGTTGAACCTTCCTTCGAAAATGAGGAACCTTACCCTAACTTCATCATCATCTACATCAAATTCTGGTTCACTAAGTTTCTCCCGAAACATTTCCCAATCTAGAGTCCTTTCACAAAGTATGTTATCTTTGAATACGGTGCAGAAGCGTGGTGTTGTTGTTGTTTGCGAGGCTGCTCCAAAGAAGGTTGATTCCGCCATTAAGAGAGCTCGTCAGGCTGAGAGGCGTCGCGTTTACAACAAAGCTCGTAAATCCGAGATTAGAACCCGTACCAAGAAGGTTTTGGAAGCACTGGAGTTGCTTAAAAAGAAATCTGATGCACAAGCAGAAGAAATTGCCTCAATTGAGAAGATGATTGGAGAGGCATACTCTATAATCGACAAAGCAGTGAAAGTGGGAACTTTGCATAGAAACACAGGAGCAAATCGCAAGTCTCGGCTTGCCAGAAGAAAGAAGGCAGTAGAGATCCATCATGGCTGGTATGCCCCTGTGCCTCAAGCCAGTGTCTGA

Protein sequence

>Msa1293530

MASVSCSLLNLPSKMRNLTLTSSSSTSNSGSLSFSRNISQSRVLSQSMLSLNTVQKRGVVVVCEAAPKKVDSAIKRARQAERRRVYNKARKSEIRTRTKKVLEALELLKKKSDAQAEEIASIEKMIGEAYSIIDKAVKVGTLHRNTGANRKSRLARRKKAVEIHHGWYAPVPQASV*