AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0050360


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0050360 MtrunA17_Chr4g0052401 99.080 326 2 1 1 326 463 787 0.0 668
Msa0050360 MtrunA17_Chr2g0297291 79.758 331 58 5 1 326 463 789 0.0 533
Msa0050360 MtrunA17_Chr2g0297321 78.550 331 62 5 1 326 21 347 0.0 522
Msa0050360 MtrunA17_Chr6g0461871 40.688 349 180 3 1 326 441 785 6.15e-85 271
Msa0050360 MtrunA17_Chr6g0451081 40.351 342 179 5 1 326 444 776 3.62e-82 264
Msa0050360 MtrunA17_Chr5g0429991 39.645 338 188 5 1 326 516 849 1.11e-79 259
Msa0050360 MtrunA17_Chr2g0279131 40.060 332 189 4 4 326 519 849 1.36e-78 256
Msa0050360 MtrunA17_Chr5g0413721 39.198 324 170 5 22 326 556 871 5.24e-77 252
Msa0050360 MtrunA17_Chr5g0430731 39.394 330 179 6 1 326 442 754 7.13e-76 247
Msa0050360 MtrunA17_Chr3g0128831 39.222 334 174 4 22 326 461 794 2.97e-74 243
Msa0050360 MtrunA17_Chr8g0365001 39.244 344 181 7 1 326 507 840 2.37e-72 239
Msa0050360 MtrunA17_Chr8g0387661 39.773 352 179 6 3 326 446 792 7.89e-70 231
Msa0050360 MtrunA17_Chr5g0430571 37.273 330 177 7 1 326 232 535 7.65e-67 218
Msa0050360 MtrunA17_Chr7g0268981 33.642 324 181 4 1 324 482 771 8.55e-63 212
Msa0050360 MtrunA17_Chr4g0055471 36.103 349 191 7 1 326 476 815 2.86e-62 211
Msa0050360 MtrunA17_Chr8g0393241 34.503 342 202 7 3 323 456 796 1.35e-61 209
Msa0050360 MtrunA17_Chr8g0380281 33.333 345 203 6 1 326 446 782 1.19e-54 190
Msa0050360 MtrunA17_Chr5g0413751 48.101 158 82 0 1 158 151 308 1.86e-53 177
Msa0050360 MtrunA17_Chr8g0344561 32.317 328 187 7 1 324 274 570 3.37e-53 183
Msa0050360 MtrunA17_Chr8g0365031 29.573 328 165 4 1 324 284 549 9.48e-53 182
Msa0050360 MtrunA17_Chr8g0344591 41.758 182 98 3 1 178 254 431 3.95e-43 154
Msa0050360 MtrunA17_Chr8g0375411 24.308 325 184 6 1 324 433 696 9.90e-26 107
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0050360 AT2G35060.2 71.515 330 82 5 1 326 472 793 4.66e-168 487
Msa0050360 AT2G35060.4 71.515 330 82 5 1 326 471 792 4.68e-168 487
Msa0050360 AT2G35060.1 71.515 330 82 5 1 326 471 792 4.68e-168 487
Msa0050360 AT2G35060.3 71.515 330 82 5 1 326 471 792 4.68e-168 487
Msa0050360 AT1G31120.1 72.892 332 79 6 1 326 470 796 4.93e-163 474
Msa0050360 AT4G19960.4 64.286 336 103 3 5 326 254 586 4.18e-140 409
Msa0050360 AT4G19960.1 64.286 336 103 3 5 326 491 823 6.00e-137 408
Msa0050360 AT4G19960.2 64.286 336 103 3 5 326 475 807 8.16e-137 407
Msa0050360 AT4G19960.3 63.393 336 106 3 5 326 501 833 1.01e-136 408
Msa0050360 AT3G02050.1 42.614 352 172 5 1 326 442 789 1.75e-84 271
Msa0050360 AT4G33530.2 41.071 336 187 4 1 326 293 627 1.67e-83 265
Msa0050360 AT4G33530.1 41.071 336 187 4 1 326 521 855 9.68e-82 265
Msa0050360 AT5G09400.1 40.882 340 186 5 1 326 520 858 4.92e-79 258
Msa0050360 AT2G40540.1 39.548 354 186 5 1 326 441 794 8.89e-79 256
Msa0050360 AT2G40540.5 39.548 354 186 5 1 326 441 794 8.89e-79 256
Msa0050360 AT2G40540.4 39.548 354 186 5 1 326 441 794 8.89e-79 256
Msa0050360 AT2G40540.2 39.548 354 186 5 1 326 441 794 8.89e-79 256
Msa0050360 AT2G40540.3 39.548 354 186 5 1 326 441 794 8.89e-79 256
Msa0050360 AT1G60160.1 37.952 332 192 4 1 326 504 827 5.23e-77 252
Msa0050360 AT4G23640.1 38.218 348 189 5 3 326 430 775 3.83e-73 241
Msa0050360 AT5G14880.1 39.823 339 189 4 1 326 445 781 4.61e-73 240
Msa0050360 AT1G70300.1 35.988 339 203 3 1 326 445 782 1.61e-67 226
Msa0050360 AT4G13420.1 33.642 324 206 1 1 324 469 783 3.18e-62 211
Msa0050360 AT2G30070.2 50.000 182 91 0 1 182 322 503 1.66e-59 201
Msa0050360 AT2G30070.2 38.961 77 47 0 250 326 516 592 1.46e-12 68.9
Msa0050360 AT2G30070.1 50.000 182 91 0 1 182 442 623 7.28e-59 201
Msa0050360 AT2G30070.1 38.961 77 47 0 250 326 636 712 1.82e-12 68.6

Find 77 sgRNAs with CRISPR-Local

Find 170 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAAGGTATCTCTCTTCTTC+CGG 0.262164 1_2:+4256710 None:intergenic
GCTGGGGTGGTTCACATATT+AGG 0.264983 1_2:-4256311 Msa0050360:CDS
ATTATATATATGCATTTCTT+AGG 0.280181 1_2:-4256232 Msa0050360:CDS
TCAGATGAATACAGTTTATA+TGG 0.316978 1_2:-4256530 Msa0050360:CDS
CTCGGGCTTGGCCCAAGTTT+AGG 0.337026 1_2:-4256881 Msa0050360:CDS
CAAGGTATCTCTCTTCTTCC+GGG 0.346404 1_2:+4256711 None:intergenic
CGAAAGATGTGGTAATTCTT+AGG 0.358981 1_2:+4256674 None:intergenic
ATTATGTTTGTCTGGCATTA+CGG 0.372759 1_2:-4256959 Msa0050360:CDS
GTCTCGATGGCATGGATTCT+CGG 0.378294 1_2:-4256899 Msa0050360:CDS
TGGGTTCCTCTTGTAATTGC+CGG 0.384804 1_2:-4256995 Msa0050360:CDS
ATGGCATGGATTCTCGGGCT+TGG 0.385857 1_2:-4256893 Msa0050360:CDS
TTAGGACTTGTTCGTGTACC+TGG 0.405042 1_2:-4256863 Msa0050360:CDS
GTGTAGACTAGTCCGATTCC+AGG 0.417435 1_2:+4256845 None:intergenic
TCTTCCGGGACGGTGTAAAC+AGG 0.434145 1_2:+4256725 None:intergenic
ACTCTTCGTCTTTCTTGTGC+AGG 0.434280 1_2:+4256624 None:intergenic
TTGAATAACTGCAGGGACGC+TGG 0.441557 1_2:-4256329 Msa0050360:CDS
TCTCGATGGCATGGATTCTC+GGG 0.451131 1_2:-4256898 Msa0050360:CDS
CTAACAGTGATATTCACATT+TGG 0.460145 1_2:+4256401 None:intergenic
CAAATGTGAATATCACTGTT+AGG 0.464701 1_2:-4256400 Msa0050360:CDS
TATTGGTGTGGCGCTGCCAC+TGG 0.464822 1_2:-4257105 Msa0050360:CDS
TGAATAACTGCAGGGACGCT+GGG 0.476846 1_2:-4256328 Msa0050360:CDS
TCAAAGTTAATCAAGGTGGA+TGG 0.480215 1_2:-4257015 Msa0050360:CDS
CTTGTTCGTGTACCTGGAAT+CGG 0.484864 1_2:-4256857 Msa0050360:CDS
AGATACCTTGTAAAGAGGAT+TGG 0.486463 1_2:-4256698 Msa0050360:CDS
TTTCGATGTGTGGCACGGTA+TGG 0.488737 1_2:-4256656 Msa0050360:CDS
CATTTCTTAGGAAAATATGC+AGG 0.492742 1_2:-4256220 Msa0050360:CDS
AAGAGAGATACCTTGTAAAG+AGG 0.504738 1_2:-4256703 Msa0050360:CDS
TAGGTCCAATCCTCTTTACA+AGG 0.508685 1_2:+4256693 None:intergenic
GTAATCTTCAAAGTTAATCA+AGG 0.509932 1_2:-4257022 Msa0050360:CDS
CACTTGCTTATCATTGATTG+TGG 0.513008 1_2:-4257065 Msa0050360:CDS
CAAGCTTAACAAACAGTGAA+AGG 0.516927 1_2:+4256579 None:intergenic
ACAGTGATATTCACATTTGG+CGG 0.519018 1_2:+4256404 None:intergenic
ACACGAACAAGTCCTAAACT+TGG 0.520151 1_2:+4256869 None:intergenic
CACAGTTGTGATGGCAAGGA+GGG 0.523327 1_2:-4256285 Msa0050360:CDS
CAGTTTATATGGAGGACAGC+AGG 0.530247 1_2:-4256519 Msa0050360:CDS
CAAAGTTAATCAAGGTGGAT+GGG 0.539107 1_2:-4257014 Msa0050360:CDS
TGTTAAGCTTGAATCTATGA+TGG 0.539727 1_2:-4256567 Msa0050360:CDS
CATGAGAGTCTCTTAAATGT+TGG 0.554708 1_2:-4256170 Msa0050360:CDS
ACAACAACAGAATGGATGGC+TGG 0.560974 1_2:+4256770 None:intergenic
AGGTCCTGCGGTCAAGTAAG+TGG 0.564330 1_2:-4256380 Msa0050360:CDS
CCTTCCTGTTTACACCGTCC+CGG 0.569084 1_2:-4256729 Msa0050360:CDS
TTGGCCACTTACTTGACCGC+AGG 0.570429 1_2:+4256376 None:intergenic
CAAGTAAGTGGCCAAACCGA+GGG 0.574154 1_2:-4256368 Msa0050360:CDS
CAACAGAATGGATGGCTGGT+AGG 0.574816 1_2:+4256774 None:intergenic
TAACTGCAGGGACGCTGGGG+TGG 0.576829 1_2:-4256324 Msa0050360:CDS
GTATCTCTCTTCTTCCGGGA+CGG 0.583221 1_2:+4256715 None:intergenic
GTCTACACAGAACTTGCAAG+TGG 0.583444 1_2:-4256830 Msa0050360:CDS
AGAATGGATGGCTGGTAGGT+TGG 0.583797 1_2:+4256778 None:intergenic
ATTAGGAAACACAGTTGTGA+TGG 0.587624 1_2:-4256294 Msa0050360:CDS
GAAACACAGTTGTGATGGCA+AGG 0.591010 1_2:-4256289 Msa0050360:CDS
GTGATATTCACATTTGGCGG+CGG 0.592182 1_2:+4256407 None:intergenic
TCAAGTAAGTGGCCAAACCG+AGG 0.600769 1_2:-4256369 Msa0050360:CDS
TTACCACATCTTTCGATGTG+TGG 0.605821 1_2:-4256666 Msa0050360:CDS
CACGAACAAGTCCTAAACTT+GGG 0.614583 1_2:+4256870 None:intergenic
ATAGTAAAGTCTCGATGGCA+TGG 0.620677 1_2:-4256907 Msa0050360:CDS
AATATCACTGTTAGGTCCTG+CGG 0.624494 1_2:-4256392 Msa0050360:CDS
AAGCACGACTTCTTCGAATG+TGG 0.624780 1_2:-4256474 Msa0050360:CDS
AATCAATGATAAGCAAGTGA+AGG 0.625371 1_2:+4257069 None:intergenic
ATTTCTTAGGAAAATATGCA+GGG 0.625694 1_2:-4256219 Msa0050360:CDS
AACACTCCGGCAATTACAAG+AGG 0.633389 1_2:+4256989 None:intergenic
ATCTTCAAAGTTAATCAAGG+TGG 0.637689 1_2:-4257019 Msa0050360:CDS
AATGCATAGTAAAGTCTCGA+TGG 0.638063 1_2:-4256912 Msa0050360:CDS
AAGCTTGAATCTATGATGGA+AGG 0.641141 1_2:-4256563 Msa0050360:CDS
GAATAACTGCAGGGACGCTG+GGG 0.645282 1_2:-4256327 Msa0050360:CDS
ACATCTTTCGATGTGTGGCA+CGG 0.647935 1_2:-4256661 Msa0050360:CDS
GATGAATACAGTTTATATGG+AGG 0.656772 1_2:-4256527 Msa0050360:CDS
CCGGGACGGTGTAAACAGGA+AGG 0.657637 1_2:+4256729 None:intergenic
TTATATGGAGGACAGCAGGA+TGG 0.666470 1_2:-4256515 Msa0050360:CDS
ACACAGTTGTGATGGCAAGG+AGG 0.669872 1_2:-4256286 Msa0050360:CDS
GTGCCACACATCGAAAGATG+TGG 0.686236 1_2:+4256663 None:intergenic
GTGATGAAATGAGAAAAGAT+CGG 0.689117 1_2:+4256800 None:intergenic
AAGTAAGTGGCCAAACCGAG+GGG 0.689786 1_2:-4256367 Msa0050360:CDS
ATGAAATGAGAAAAGATCGG+TGG 0.702922 1_2:+4256803 None:intergenic
AGTAAGTGGCCAAACCGAGG+GGG 0.709182 1_2:-4256366 Msa0050360:CDS
ACATTTAAGAGACTCTCATG+AGG 0.718347 1_2:+4256173 None:intergenic
GATGGCGTGTTGAATAACAA+CGG 0.731429 1_2:-4256497 Msa0050360:CDS
AGGCGAGTACAAGAATCCAG+TGG 0.751362 1_2:+4257089 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATATATATGCATTTCTT+AGG - chr1_2:4257028-4257047 Msa0050360:CDS 15.0%
!! ATTATATATATGCATTTCTT+AGG - chr1_2:4257028-4257047 Msa0050360:CDS 15.0%
!!! TTTTTATCATTATGTTTGTC+TGG - chr1_2:4256293-4256312 Msa0050360:CDS 20.0%
!!! TTTTTATCATTATGTTTGTC+TGG - chr1_2:4256293-4256312 Msa0050360:CDS 20.0%
! GTAATCTTCAAAGTTAATCA+AGG - chr1_2:4256238-4256257 Msa0050360:CDS 25.0%
! CATAATGATAAAAAACACTC+CGG + chr1_2:4256287-4256306 None:intergenic 25.0%
! ATACAAAAACAACAACAGAA+TGG + chr1_2:4256501-4256520 None:intergenic 25.0%
! TCAGATGAATACAGTTTATA+TGG - chr1_2:4256730-4256749 Msa0050360:CDS 25.0%
!! TTGAATTTTTGAATAACTGC+AGG - chr1_2:4256923-4256942 Msa0050360:CDS 25.0%
!! TGAATTTTTGAATAACTGCA+GGG - chr1_2:4256924-4256943 Msa0050360:CDS 25.0%
! ATTTCTTAGGAAAATATGCA+GGG - chr1_2:4257041-4257060 Msa0050360:CDS 25.0%
! GTAATCTTCAAAGTTAATCA+AGG - chr1_2:4256238-4256257 Msa0050360:CDS 25.0%
! CATAATGATAAAAAACACTC+CGG + chr1_2:4256287-4256306 None:intergenic 25.0%
! ATACAAAAACAACAACAGAA+TGG + chr1_2:4256501-4256520 None:intergenic 25.0%
! TCAGATGAATACAGTTTATA+TGG - chr1_2:4256730-4256749 Msa0050360:CDS 25.0%
!! TTGAATTTTTGAATAACTGC+AGG - chr1_2:4256923-4256942 Msa0050360:CDS 25.0%
!! TGAATTTTTGAATAACTGCA+GGG - chr1_2:4256924-4256943 Msa0050360:CDS 25.0%
! ATTTCTTAGGAAAATATGCA+GGG - chr1_2:4257041-4257060 Msa0050360:CDS 25.0%
AATCAATGATAAGCAAGTGA+AGG + chr1_2:4256194-4256213 None:intergenic 30.0%
ATCTTCAAAGTTAATCAAGG+TGG - chr1_2:4256241-4256260 Msa0050360:CDS 30.0%
ATTATGTTTGTCTGGCATTA+CGG - chr1_2:4256301-4256320 Msa0050360:CDS 30.0%
GTGATGAAATGAGAAAAGAT+CGG + chr1_2:4256463-4256482 None:intergenic 30.0%
AAAAACAACAACAGAATGGA+TGG + chr1_2:4256497-4256516 None:intergenic 30.0%
TGTTAAGCTTGAATCTATGA+TGG - chr1_2:4256693-4256712 Msa0050360:CDS 30.0%
GATGAATACAGTTTATATGG+AGG - chr1_2:4256733-4256752 Msa0050360:CDS 30.0%
CTAACAGTGATATTCACATT+TGG + chr1_2:4256862-4256881 None:intergenic 30.0%
CAAATGTGAATATCACTGTT+AGG - chr1_2:4256860-4256879 Msa0050360:CDS 30.0%
CATTTCTTAGGAAAATATGC+AGG - chr1_2:4257040-4257059 Msa0050360:CDS 30.0%
AATCAATGATAAGCAAGTGA+AGG + chr1_2:4256194-4256213 None:intergenic 30.0%
ATCTTCAAAGTTAATCAAGG+TGG - chr1_2:4256241-4256260 Msa0050360:CDS 30.0%
ATTATGTTTGTCTGGCATTA+CGG - chr1_2:4256301-4256320 Msa0050360:CDS 30.0%
GTGATGAAATGAGAAAAGAT+CGG + chr1_2:4256463-4256482 None:intergenic 30.0%
AAAAACAACAACAGAATGGA+TGG + chr1_2:4256497-4256516 None:intergenic 30.0%
TGTTAAGCTTGAATCTATGA+TGG - chr1_2:4256693-4256712 Msa0050360:CDS 30.0%
GATGAATACAGTTTATATGG+AGG - chr1_2:4256733-4256752 Msa0050360:CDS 30.0%
CTAACAGTGATATTCACATT+TGG + chr1_2:4256862-4256881 None:intergenic 30.0%
CAAATGTGAATATCACTGTT+AGG - chr1_2:4256860-4256879 Msa0050360:CDS 30.0%
CATTTCTTAGGAAAATATGC+AGG - chr1_2:4257040-4257059 Msa0050360:CDS 30.0%
! CACTTGCTTATCATTGATTG+TGG - chr1_2:4256195-4256214 Msa0050360:CDS 35.0%
TCAAAGTTAATCAAGGTGGA+TGG - chr1_2:4256245-4256264 Msa0050360:CDS 35.0%
CAAAGTTAATCAAGGTGGAT+GGG - chr1_2:4256246-4256265 Msa0050360:CDS 35.0%
AATGCATAGTAAAGTCTCGA+TGG - chr1_2:4256348-4256367 Msa0050360:CDS 35.0%
ATGAAATGAGAAAAGATCGG+TGG + chr1_2:4256460-4256479 None:intergenic 35.0%
AAGAGAGATACCTTGTAAAG+AGG - chr1_2:4256557-4256576 Msa0050360:CDS 35.0%
AGATACCTTGTAAAGAGGAT+TGG - chr1_2:4256562-4256581 Msa0050360:CDS 35.0%
CGAAAGATGTGGTAATTCTT+AGG + chr1_2:4256589-4256608 None:intergenic 35.0%
CAAGCTTAACAAACAGTGAA+AGG + chr1_2:4256684-4256703 None:intergenic 35.0%
! AAGCTTGAATCTATGATGGA+AGG - chr1_2:4256697-4256716 Msa0050360:CDS 35.0%
ACAGTGATATTCACATTTGG+CGG + chr1_2:4256859-4256878 None:intergenic 35.0%
ATTAGGAAACACAGTTGTGA+TGG - chr1_2:4256966-4256985 Msa0050360:CDS 35.0%
ACATTTAAGAGACTCTCATG+AGG + chr1_2:4257090-4257109 None:intergenic 35.0%
CATGAGAGTCTCTTAAATGT+TGG - chr1_2:4257090-4257109 Msa0050360:CDS 35.0%
! CACTTGCTTATCATTGATTG+TGG - chr1_2:4256195-4256214 Msa0050360:CDS 35.0%
TCAAAGTTAATCAAGGTGGA+TGG - chr1_2:4256245-4256264 Msa0050360:CDS 35.0%
CAAAGTTAATCAAGGTGGAT+GGG - chr1_2:4256246-4256265 Msa0050360:CDS 35.0%
AATGCATAGTAAAGTCTCGA+TGG - chr1_2:4256348-4256367 Msa0050360:CDS 35.0%
ATGAAATGAGAAAAGATCGG+TGG + chr1_2:4256460-4256479 None:intergenic 35.0%
AAGAGAGATACCTTGTAAAG+AGG - chr1_2:4256557-4256576 Msa0050360:CDS 35.0%
AGATACCTTGTAAAGAGGAT+TGG - chr1_2:4256562-4256581 Msa0050360:CDS 35.0%
CGAAAGATGTGGTAATTCTT+AGG + chr1_2:4256589-4256608 None:intergenic 35.0%
CAAGCTTAACAAACAGTGAA+AGG + chr1_2:4256684-4256703 None:intergenic 35.0%
! AAGCTTGAATCTATGATGGA+AGG - chr1_2:4256697-4256716 Msa0050360:CDS 35.0%
ACAGTGATATTCACATTTGG+CGG + chr1_2:4256859-4256878 None:intergenic 35.0%
ATTAGGAAACACAGTTGTGA+TGG - chr1_2:4256966-4256985 Msa0050360:CDS 35.0%
ACATTTAAGAGACTCTCATG+AGG + chr1_2:4257090-4257109 None:intergenic 35.0%
CATGAGAGTCTCTTAAATGT+TGG - chr1_2:4257090-4257109 Msa0050360:CDS 35.0%
ATAGTAAAGTCTCGATGGCA+TGG - chr1_2:4256353-4256372 Msa0050360:CDS 40.0%
CACGAACAAGTCCTAAACTT+GGG + chr1_2:4256393-4256412 None:intergenic 40.0%
ACACGAACAAGTCCTAAACT+TGG + chr1_2:4256394-4256413 None:intergenic 40.0%
! ACAAGGTATCTCTCTTCTTC+CGG + chr1_2:4256553-4256572 None:intergenic 40.0%
TAGGTCCAATCCTCTTTACA+AGG + chr1_2:4256570-4256589 None:intergenic 40.0%
TTACCACATCTTTCGATGTG+TGG - chr1_2:4256594-4256613 Msa0050360:CDS 40.0%
GATGGCGTGTTGAATAACAA+CGG - chr1_2:4256763-4256782 Msa0050360:CDS 40.0%
AATATCACTGTTAGGTCCTG+CGG - chr1_2:4256868-4256887 Msa0050360:CDS 40.0%
! AAATTCAAGTTCATCCCCCT+CGG + chr1_2:4256911-4256930 None:intergenic 40.0%
ATAGTAAAGTCTCGATGGCA+TGG - chr1_2:4256353-4256372 Msa0050360:CDS 40.0%
CACGAACAAGTCCTAAACTT+GGG + chr1_2:4256393-4256412 None:intergenic 40.0%
ACACGAACAAGTCCTAAACT+TGG + chr1_2:4256394-4256413 None:intergenic 40.0%
! ACAAGGTATCTCTCTTCTTC+CGG + chr1_2:4256553-4256572 None:intergenic 40.0%
TAGGTCCAATCCTCTTTACA+AGG + chr1_2:4256570-4256589 None:intergenic 40.0%
TTACCACATCTTTCGATGTG+TGG - chr1_2:4256594-4256613 Msa0050360:CDS 40.0%
GATGGCGTGTTGAATAACAA+CGG - chr1_2:4256763-4256782 Msa0050360:CDS 40.0%
AATATCACTGTTAGGTCCTG+CGG - chr1_2:4256868-4256887 Msa0050360:CDS 40.0%
! AAATTCAAGTTCATCCCCCT+CGG + chr1_2:4256911-4256930 None:intergenic 40.0%
TGGGTTCCTCTTGTAATTGC+CGG - chr1_2:4256265-4256284 Msa0050360:CDS 45.0%
AACACTCCGGCAATTACAAG+AGG + chr1_2:4256274-4256293 None:intergenic 45.0%
! TTAGGACTTGTTCGTGTACC+TGG - chr1_2:4256397-4256416 Msa0050360:CDS 45.0%
CTTGTTCGTGTACCTGGAAT+CGG - chr1_2:4256403-4256422 Msa0050360:CDS 45.0%
GTCTACACAGAACTTGCAAG+TGG - chr1_2:4256430-4256449 Msa0050360:CDS 45.0%
ACAACAACAGAATGGATGGC+TGG + chr1_2:4256493-4256512 None:intergenic 45.0%
! CAAGGTATCTCTCTTCTTCC+GGG + chr1_2:4256552-4256571 None:intergenic 45.0%
ACATCTTTCGATGTGTGGCA+CGG - chr1_2:4256599-4256618 Msa0050360:CDS 45.0%
ACTCTTCGTCTTTCTTGTGC+AGG + chr1_2:4256639-4256658 None:intergenic 45.0%
CAGTTTATATGGAGGACAGC+AGG - chr1_2:4256741-4256760 Msa0050360:CDS 45.0%
TTATATGGAGGACAGCAGGA+TGG - chr1_2:4256745-4256764 Msa0050360:CDS 45.0%
AAGCACGACTTCTTCGAATG+TGG - chr1_2:4256786-4256805 Msa0050360:CDS 45.0%
GTGATATTCACATTTGGCGG+CGG + chr1_2:4256856-4256875 None:intergenic 45.0%
GAAACACAGTTGTGATGGCA+AGG - chr1_2:4256971-4256990 Msa0050360:CDS 45.0%
TGGGTTCCTCTTGTAATTGC+CGG - chr1_2:4256265-4256284 Msa0050360:CDS 45.0%
AACACTCCGGCAATTACAAG+AGG + chr1_2:4256274-4256293 None:intergenic 45.0%
! TTAGGACTTGTTCGTGTACC+TGG - chr1_2:4256397-4256416 Msa0050360:CDS 45.0%
CTTGTTCGTGTACCTGGAAT+CGG - chr1_2:4256403-4256422 Msa0050360:CDS 45.0%
GTCTACACAGAACTTGCAAG+TGG - chr1_2:4256430-4256449 Msa0050360:CDS 45.0%
ACAACAACAGAATGGATGGC+TGG + chr1_2:4256493-4256512 None:intergenic 45.0%
! CAAGGTATCTCTCTTCTTCC+GGG + chr1_2:4256552-4256571 None:intergenic 45.0%
ACATCTTTCGATGTGTGGCA+CGG - chr1_2:4256599-4256618 Msa0050360:CDS 45.0%
ACTCTTCGTCTTTCTTGTGC+AGG + chr1_2:4256639-4256658 None:intergenic 45.0%
CAGTTTATATGGAGGACAGC+AGG - chr1_2:4256741-4256760 Msa0050360:CDS 45.0%
TTATATGGAGGACAGCAGGA+TGG - chr1_2:4256745-4256764 Msa0050360:CDS 45.0%
AAGCACGACTTCTTCGAATG+TGG - chr1_2:4256786-4256805 Msa0050360:CDS 45.0%
GTGATATTCACATTTGGCGG+CGG + chr1_2:4256856-4256875 None:intergenic 45.0%
GAAACACAGTTGTGATGGCA+AGG - chr1_2:4256971-4256990 Msa0050360:CDS 45.0%
AGGCGAGTACAAGAATCCAG+TGG + chr1_2:4256174-4256193 None:intergenic 50.0%
GTCTCGATGGCATGGATTCT+CGG - chr1_2:4256361-4256380 Msa0050360:CDS 50.0%
TCTCGATGGCATGGATTCTC+GGG - chr1_2:4256362-4256381 Msa0050360:CDS 50.0%
! GTGTAGACTAGTCCGATTCC+AGG + chr1_2:4256418-4256437 None:intergenic 50.0%
AGAATGGATGGCTGGTAGGT+TGG + chr1_2:4256485-4256504 None:intergenic 50.0%
CAACAGAATGGATGGCTGGT+AGG + chr1_2:4256489-4256508 None:intergenic 50.0%
GTATCTCTCTTCTTCCGGGA+CGG + chr1_2:4256548-4256567 None:intergenic 50.0%
GTGCCACACATCGAAAGATG+TGG + chr1_2:4256600-4256619 None:intergenic 50.0%
TTTCGATGTGTGGCACGGTA+TGG - chr1_2:4256604-4256623 Msa0050360:CDS 50.0%
TCAAGTAAGTGGCCAAACCG+AGG - chr1_2:4256891-4256910 Msa0050360:CDS 50.0%
CAAGTAAGTGGCCAAACCGA+GGG - chr1_2:4256892-4256911 Msa0050360:CDS 50.0%
AAGTAAGTGGCCAAACCGAG+GGG - chr1_2:4256893-4256912 Msa0050360:CDS 50.0%
TTGAATAACTGCAGGGACGC+TGG - chr1_2:4256931-4256950 Msa0050360:CDS 50.0%
TGAATAACTGCAGGGACGCT+GGG - chr1_2:4256932-4256951 Msa0050360:CDS 50.0%
GCTGGGGTGGTTCACATATT+AGG - chr1_2:4256949-4256968 Msa0050360:CDS 50.0%
ACACAGTTGTGATGGCAAGG+AGG - chr1_2:4256974-4256993 Msa0050360:CDS 50.0%
CACAGTTGTGATGGCAAGGA+GGG - chr1_2:4256975-4256994 Msa0050360:CDS 50.0%
AGGCGAGTACAAGAATCCAG+TGG + chr1_2:4256174-4256193 None:intergenic 50.0%
GTCTCGATGGCATGGATTCT+CGG - chr1_2:4256361-4256380 Msa0050360:CDS 50.0%
TCTCGATGGCATGGATTCTC+GGG - chr1_2:4256362-4256381 Msa0050360:CDS 50.0%
! GTGTAGACTAGTCCGATTCC+AGG + chr1_2:4256418-4256437 None:intergenic 50.0%
AGAATGGATGGCTGGTAGGT+TGG + chr1_2:4256485-4256504 None:intergenic 50.0%
CAACAGAATGGATGGCTGGT+AGG + chr1_2:4256489-4256508 None:intergenic 50.0%
GTATCTCTCTTCTTCCGGGA+CGG + chr1_2:4256548-4256567 None:intergenic 50.0%
GTGCCACACATCGAAAGATG+TGG + chr1_2:4256600-4256619 None:intergenic 50.0%
TTTCGATGTGTGGCACGGTA+TGG - chr1_2:4256604-4256623 Msa0050360:CDS 50.0%
TCAAGTAAGTGGCCAAACCG+AGG - chr1_2:4256891-4256910 Msa0050360:CDS 50.0%
CAAGTAAGTGGCCAAACCGA+GGG - chr1_2:4256892-4256911 Msa0050360:CDS 50.0%
AAGTAAGTGGCCAAACCGAG+GGG - chr1_2:4256893-4256912 Msa0050360:CDS 50.0%
TTGAATAACTGCAGGGACGC+TGG - chr1_2:4256931-4256950 Msa0050360:CDS 50.0%
TGAATAACTGCAGGGACGCT+GGG - chr1_2:4256932-4256951 Msa0050360:CDS 50.0%
GCTGGGGTGGTTCACATATT+AGG - chr1_2:4256949-4256968 Msa0050360:CDS 50.0%
ACACAGTTGTGATGGCAAGG+AGG - chr1_2:4256974-4256993 Msa0050360:CDS 50.0%
CACAGTTGTGATGGCAAGGA+GGG - chr1_2:4256975-4256994 Msa0050360:CDS 50.0%
ATGGCATGGATTCTCGGGCT+TGG - chr1_2:4256367-4256386 Msa0050360:CDS 55.0%
CCTTCCTGTTTACACCGTCC+CGG - chr1_2:4256531-4256550 Msa0050360:CDS 55.0%
TCTTCCGGGACGGTGTAAAC+AGG + chr1_2:4256538-4256557 None:intergenic 55.0%
AGGTCCTGCGGTCAAGTAAG+TGG - chr1_2:4256880-4256899 Msa0050360:CDS 55.0%
TTGGCCACTTACTTGACCGC+AGG + chr1_2:4256887-4256906 None:intergenic 55.0%
AGTAAGTGGCCAAACCGAGG+GGG - chr1_2:4256894-4256913 Msa0050360:CDS 55.0%
CAAGTTCATCCCCCTCGGTT+TGG + chr1_2:4256906-4256925 None:intergenic 55.0%
GAATAACTGCAGGGACGCTG+GGG - chr1_2:4256933-4256952 Msa0050360:CDS 55.0%
ATGGCATGGATTCTCGGGCT+TGG - chr1_2:4256367-4256386 Msa0050360:CDS 55.0%
CCTTCCTGTTTACACCGTCC+CGG - chr1_2:4256531-4256550 Msa0050360:CDS 55.0%
TCTTCCGGGACGGTGTAAAC+AGG + chr1_2:4256538-4256557 None:intergenic 55.0%
AGGTCCTGCGGTCAAGTAAG+TGG - chr1_2:4256880-4256899 Msa0050360:CDS 55.0%
TTGGCCACTTACTTGACCGC+AGG + chr1_2:4256887-4256906 None:intergenic 55.0%
AGTAAGTGGCCAAACCGAGG+GGG - chr1_2:4256894-4256913 Msa0050360:CDS 55.0%
CAAGTTCATCCCCCTCGGTT+TGG + chr1_2:4256906-4256925 None:intergenic 55.0%
GAATAACTGCAGGGACGCTG+GGG - chr1_2:4256933-4256952 Msa0050360:CDS 55.0%
TATTGGTGTGGCGCTGCCAC+TGG - chr1_2:4256155-4256174 Msa0050360:CDS 60.0%
CTCGGGCTTGGCCCAAGTTT+AGG - chr1_2:4256379-4256398 Msa0050360:CDS 60.0%
CCGGGACGGTGTAAACAGGA+AGG + chr1_2:4256534-4256553 None:intergenic 60.0%
TATTGGTGTGGCGCTGCCAC+TGG - chr1_2:4256155-4256174 Msa0050360:CDS 60.0%
CTCGGGCTTGGCCCAAGTTT+AGG - chr1_2:4256379-4256398 Msa0050360:CDS 60.0%
CCGGGACGGTGTAAACAGGA+AGG + chr1_2:4256534-4256553 None:intergenic 60.0%
TAACTGCAGGGACGCTGGGG+TGG - chr1_2:4256936-4256955 Msa0050360:CDS 65.0%
TAACTGCAGGGACGCTGGGG+TGG - chr1_2:4256936-4256955 Msa0050360:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 4256151 4257131 4256151 ID=Msa0050360;Name=Msa0050360
chr1_2 mRNA 4256151 4257131 4256151 ID=Msa0050360-mRNA-1;Parent=Msa0050360;Name=Msa0050360-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|-1|0|1|-1|1|1|0|326
chr1_2 exon 4256151 4257131 4256151 ID=Msa0050360-mRNA-1:exon:1060;Parent=Msa0050360-mRNA-1
chr1_2 CDS 4256151 4257131 4256151 ID=Msa0050360-mRNA-1:cds;Parent=Msa0050360-mRNA-1
Gene Sequence

>Msa0050360

ATGATATTGGTGTGGCGCTGCCACTGGATTCTTGTACTCGCCTTCACTTGCTTATCATTGATTGTGGAATTGTCATACTTCTTCTCTGTAATCTTCAAAGTTAATCAAGGTGGATGGGTTCCTCTTGTAATTGCCGGAGTGTTTTTTATCATTATGTTTGTCTGGCATTACGGTACAGTGAAACGCTACGAATTTGAAATGCATAGTAAAGTCTCGATGGCATGGATTCTCGGGCTTGGCCCAAGTTTAGGACTTGTTCGTGTACCTGGAATCGGACTAGTCTACACAGAACTTGCAAGTGGAGTACCACCGATCTTTTCTCATTTCATCACCAACCTACCAGCCATCCATTCTGTTGTTGTTTTTGTATGCGTCAAATACCTTCCTGTTTACACCGTCCCGGAAGAAGAGAGATACCTTGTAAAGAGGATTGGACCTAAGAATTACCACATCTTTCGATGTGTGGCACGGTATGGCTACAAAGACCTGCACAAGAAAGACGAAGAGTTTGAGAAAAAACTCTTTGATAACCTTTCACTGTTTGTTAAGCTTGAATCTATGATGGAAGGTTGTTCAGACTCAGATGAATACAGTTTATATGGAGGACAGCAGGATGGCGTGTTGAATAACAACGGAAGCACGACTTCTTCGAATGTGGAGTTAACAATTAACTCGATAGATTCAATAGTACAAGTTCGATCACCGCCGCCAAATGTGAATATCACTGTTAGGTCCTGCGGTCAAGTAAGTGGCCAAACCGAGGGGGATGAACTTGAATTTTTGAATAACTGCAGGGACGCTGGGGTGGTTCACATATTAGGAAACACAGTTGTGATGGCAAGGAGGGATTCAAATATTTTCAAGAAAGTAGCTGTTGATTATATATATGCATTTCTTAGGAAAATATGCAGGGAAAATAGTGTGATCTTCAATGTTCCTCATGAGAGTCTCTTAAATGTTGGTCAGATATTCTATGTATAG

Protein sequence

>Msa0050360

MILVWRCHWILVLAFTCLSLIVELSYFFSVIFKVNQGGWVPLVIAGVFFIIMFVWHYGTVKRYEFEMHSKVSMAWILGLGPSLGLVRVPGIGLVYTELASGVPPIFSHFITNLPAIHSVVVFVCVKYLPVYTVPEEERYLVKRIGPKNYHIFRCVARYGYKDLHKKDEEFEKKLFDNLSLFVKLESMMEGCSDSDEYSLYGGQQDGVLNNNGSTTSSNVELTINSIDSIVQVRSPPPNVNITVRSCGQVSGQTEGDELEFLNNCRDAGVVHILGNTVVMARRDSNIFKKVAVDYIYAFLRKICRENSVIFNVPHESLLNVGQIFYV*