AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0050400


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0050400 MtrunA17_Chr4g0052401 96.738 797 4 3 1 785 1 787 0.0 1566
Msa0050400 MtrunA17_Chr2g0297291 79.177 802 137 7 1 785 1 789 0.0 1264
Msa0050400 MtrunA17_Chr6g0461871 47.287 774 357 6 50 785 25 785 0.0 708
Msa0050400 MtrunA17_Chr5g0430731 44.692 763 377 9 42 785 18 754 0.0 671
Msa0050400 MtrunA17_Chr6g0451081 44.347 796 385 12 28 785 1 776 0.0 670
Msa0050400 MtrunA17_Chr2g0297311 77.093 454 83 2 1 442 1 445 0.0 666
Msa0050400 MtrunA17_Chr3g0128831 45.241 809 377 14 28 785 1 794 0.0 659
Msa0050400 MtrunA17_Chr7g0268981 43.097 775 384 7 23 783 40 771 0.0 655
Msa0050400 MtrunA17_Chr8g0365001 44.949 792 382 12 26 785 71 840 0.0 648
Msa0050400 MtrunA17_Chr2g0279131 44.233 789 396 11 22 785 80 849 0.0 642
Msa0050400 MtrunA17_Chr4g0055471 44.390 811 391 14 12 785 28 815 0.0 640
Msa0050400 MtrunA17_Chr5g0429991 43.832 762 385 10 52 785 103 849 0.0 612
Msa0050400 MtrunA17_Chr8g0387661 42.966 789 392 10 41 785 18 792 0.0 606
Msa0050400 MtrunA17_Chr8g0380281 41.823 801 411 11 18 785 4 782 0.0 599
Msa0050400 MtrunA17_Chr2g0297321 78.510 349 66 5 442 785 3 347 0.0 552
Msa0050400 MtrunA17_Chr8g0393241 37.674 791 438 14 40 782 13 796 1.06e-171 514
Msa0050400 MtrunA17_Chr8g0375411 35.332 767 396 12 34 783 13 696 3.58e-148 450
Msa0050400 MtrunA17_Chr8g0344561 39.238 604 317 9 198 785 3 572 2.22e-143 434
Msa0050400 MtrunA17_Chr8g0365031 38.743 573 273 6 227 783 39 549 2.71e-142 430
Msa0050400 MtrunA17_Chr5g0430571 40.388 567 279 11 228 785 19 535 2.73e-136 414
Msa0050400 MtrunA17_Chr5g0413721 49.446 451 193 8 28 454 1 440 2.73e-132 414
Msa0050400 MtrunA17_Chr5g0413721 39.286 364 194 5 441 785 516 871 8.43e-79 271
Msa0050400 MtrunA17_Chr8g0344591 42.325 456 220 7 198 637 3 431 3.99e-115 357
Msa0050400 MtrunA17_Chr5g0413751 49.432 176 89 0 442 617 133 308 1.71e-56 196
Msa0050400 MtrunA17_Chr5g0413751 45.652 92 45 1 109 195 47 138 4.41e-18 85.9
Msa0050400 MtrunA17_Chr8g0365041 49.515 206 93 2 22 225 35 231 1.18e-55 191
Msa0050400 MtrunA17_Chr5g0430551 52.532 158 72 1 49 203 10 167 3.36e-48 168
Msa0050400 MtrunA17_Chr8g0344581 54.000 150 66 1 50 199 4 150 1.10e-47 166
Msa0050400 MtrunA17_Chr8g0344551 54.000 150 66 1 50 199 4 150 1.61e-47 165
Msa0050400 MtrunA17_Chr1g0159401 43.966 116 58 2 209 324 15 123 8.30e-22 93.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0050400 AT2G35060.4 73.548 809 173 8 1 785 1 792 0.0 1170
Msa0050400 AT2G35060.1 73.548 809 173 8 1 785 1 792 0.0 1170
Msa0050400 AT2G35060.3 73.548 809 173 8 1 785 1 792 0.0 1170
Msa0050400 AT1G31120.1 74.384 812 165 9 1 785 1 796 0.0 1169
Msa0050400 AT2G35060.2 73.457 810 173 9 1 785 1 793 0.0 1165
Msa0050400 AT4G19960.2 66.422 819 229 7 1 785 1 807 0.0 1026
Msa0050400 AT4G19960.3 65.191 836 237 7 1 785 1 833 0.0 1021
Msa0050400 AT4G19960.1 65.150 835 229 8 1 785 1 823 0.0 1016
Msa0050400 AT4G19960.4 66.214 589 170 4 223 785 1 586 0.0 753
Msa0050400 AT2G40540.1 46.144 804 377 11 28 785 1 794 0.0 674
Msa0050400 AT2G40540.5 46.144 804 377 11 28 785 1 794 0.0 674
Msa0050400 AT2G40540.4 46.144 804 377 11 28 785 1 794 0.0 674
Msa0050400 AT2G40540.2 46.144 804 377 11 28 785 1 794 0.0 674
Msa0050400 AT2G40540.3 46.144 804 377 11 28 785 1 794 0.0 674
Msa0050400 AT1G60160.1 45.026 764 383 8 42 785 81 827 0.0 664
Msa0050400 AT3G02050.1 45.750 800 380 8 27 785 3 789 0.0 662
Msa0050400 AT5G14880.1 46.271 791 372 12 34 785 5 781 0.0 660
Msa0050400 AT1G70300.1 44.025 795 395 10 28 785 1 782 0.0 650
Msa0050400 AT4G13420.1 42.821 801 413 7 4 783 7 783 0.0 644
Msa0050400 AT4G33530.1 44.254 818 400 12 4 785 58 855 0.0 639
Msa0050400 AT5G09400.1 43.932 824 407 12 5 785 47 858 0.0 627
Msa0050400 AT2G30070.1 49.268 615 288 3 42 641 18 623 0.0 622
Msa0050400 AT2G30070.1 38.961 77 47 0 709 785 636 712 1.04e-11 68.9
Msa0050400 AT4G23640.1 43.918 781 378 11 49 785 11 775 0.0 615
Msa0050400 AT4G33530.2 44.480 625 315 6 183 785 13 627 1.38e-175 519
Msa0050400 AT2G30070.2 47.945 511 245 2 143 641 2 503 3.38e-170 503
Msa0050400 AT2G30070.2 38.961 77 47 0 709 785 516 592 8.37e-12 69.3

Find 217 sgRNAs with CRISPR-Local

Find 379 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGAGTCTTGGCGTGGTTTA+TGG 0.144680 1_2:-4287770 Msa0050400:CDS
ATCGGCTGTTGGTGGGATTA+AGG 0.255722 1_2:-4286493 Msa0050400:CDS
ACAAGGTATCTCTCTTCTTC+CGG 0.262164 1_2:+4284307 None:intergenic
GCTGGGGTGGTTCACATATT+AGG 0.264983 1_2:-4283908 Msa0050400:CDS
ATTCTTATTCTTGTCCTTGC+TGG 0.272064 1_2:-4286683 Msa0050400:CDS
ATTATATATATGCATTTCTT+AGG 0.280181 1_2:-4283829 Msa0050400:CDS
CTCAAGTATTTGTATTTGTC+TGG 0.284716 1_2:-4289049 Msa0050400:five_prime_UTR
TGTCGCCTGGCTTGCAACTA+TGG 0.292518 1_2:+4285062 None:intergenic
TTGCTCCAATTGTCCTCCTT+TGG 0.298318 1_2:-4286235 Msa0050400:CDS
ATTGATAAATTTAGATGTAT+TGG 0.300396 1_2:+4283413 None:intergenic
TCAGATGAATACAGTTTATA+TGG 0.316978 1_2:-4284127 Msa0050400:CDS
CTCCTTTGGTTTCTCCTAAT+AGG 0.317007 1_2:-4286221 Msa0050400:CDS
TTGCAGCAAATGACCTTTCA+TGG 0.321779 1_2:+4286750 None:intergenic
GAAAATTGCATAGCTGAAAA+TGG 0.322285 1_2:-4288213 Msa0050400:exon
CTTTGCATTGCCGTCACGGC+AGG 0.331474 1_2:-4284907 Msa0050400:CDS
CAAAGGTAGTATGTGGGATT+TGG 0.334435 1_2:-4288156 Msa0050400:CDS
CTCGGGCTTGGCCCAAGTTT+AGG 0.337026 1_2:-4284478 Msa0050400:CDS
GAAAATAAACTCAAACAAAA+AGG 0.344105 1_2:+4283556 None:intergenic
CAAGGTATCTCTCTTCTTCC+GGG 0.346404 1_2:+4284308 None:intergenic
TACCATAAGCATTTCCAATC+TGG 0.350786 1_2:+4284869 None:intergenic
TGTCTGTGCCATAATGTTGC+AGG 0.356956 1_2:+4286273 None:intergenic
ATTCTTACCCCGGCTATATC+AGG 0.357397 1_2:-4286635 Msa0050400:intron
CGAAAGATGTGGTAATTCTT+AGG 0.358981 1_2:+4284271 None:intergenic
ATCAGAAAGAAGAAGTGATA+TGG 0.358989 1_2:+4288865 None:intergenic
ATATTTAACATCTGTAAGTA+TGG 0.359612 1_2:-4286188 Msa0050400:CDS
TATATAGTCCAGATATCAAT+TGG 0.360279 1_2:-4284942 Msa0050400:CDS
TGTGATGGAGAGTACAAAAC+TGG 0.363148 1_2:+4288790 None:intergenic
ATATACCAATACCTCCTATT+AGG 0.365604 1_2:+4286207 None:intergenic
TCTTAAAATCTTAAACTAAC+TGG 0.368693 1_2:-4283471 Msa0050400:three_prime_UTR
AACCAGATTGGAAATGCTTA+TGG 0.368806 1_2:-4284871 Msa0050400:intron
ATTATGTTTGTCTGGCATTA+CGG 0.372759 1_2:-4284556 Msa0050400:CDS
TGATATCTGGACTATATATC+TGG 0.373074 1_2:+4284947 None:intergenic
GTCTCGATGGCATGGATTCT+CGG 0.378294 1_2:-4284496 Msa0050400:CDS
TCATCGGTGCGATGCTGATT+GGG 0.380293 1_2:+4286803 None:intergenic
TTCATCGGTGCGATGCTGAT+TGG 0.380303 1_2:+4286802 None:intergenic
ATAAAACTACATGGAAGATA+TGG 0.382154 1_2:+4286514 None:intergenic
ATAAGGACCCAATTGATATC+TGG 0.383547 1_2:+4284934 None:intergenic
GGAACATACCATTACTCATA+TGG 0.384347 1_2:+4286460 None:intergenic
TGGGTTCCTCTTGTAATTGC+CGG 0.384804 1_2:-4284592 Msa0050400:CDS
ATGGCATGGATTCTCGGGCT+TGG 0.385857 1_2:-4284490 Msa0050400:CDS
GGTATCATGCTCAGTATAAC+AGG 0.392216 1_2:-4286080 Msa0050400:intron
TTAGGACTTGTTCGTGTACC+TGG 0.405042 1_2:-4284460 Msa0050400:CDS
GATTATCTACTCTCTTACCT+TGG 0.406143 1_2:-4287657 Msa0050400:CDS
TCTTCATCTTTCACACCGTT+CGG 0.408337 1_2:+4287704 None:intergenic
AATGAGTCAAGTTATTCATA+AGG 0.411947 1_2:+4285534 None:intergenic
ATTGCTGTTGTAATATTAGT+TGG 0.412164 1_2:-4286305 Msa0050400:CDS
GTGTAGACTAGTCCGATTCC+AGG 0.417435 1_2:+4284442 None:intergenic
CATAAAATGACTTGTGATGA+AGG 0.418940 1_2:+4283715 None:intergenic
AAATAGTGATATATGTAAAC+AGG 0.422030 1_2:+4286140 None:intergenic
TTTCTCCTAATAGGAGGTAT+TGG 0.422505 1_2:-4286212 Msa0050400:CDS
AGAAACCAAAGGAGGACAAT+TGG 0.429550 1_2:+4286230 None:intergenic
TCTTCCGGGACGGTGTAAAC+AGG 0.434145 1_2:+4284322 None:intergenic
ACTCTTCGTCTTTCTTGTGC+AGG 0.434280 1_2:+4284221 None:intergenic
GCTGGCACCTGCATGGTAAT+CGG 0.439778 1_2:-4286665 Msa0050400:CDS
TTGAATAACTGCAGGGACGC+TGG 0.441557 1_2:-4283926 Msa0050400:CDS
AGGGATAGTAGTAGAATTGA+GGG 0.442746 1_2:-4288246 Msa0050400:five_prime_UTR
TCTCGATGGCATGGATTCTC+GGG 0.451131 1_2:-4284495 Msa0050400:CDS
GTATATACAACTTTAACTCT+AGG 0.455200 1_2:+4284988 None:intergenic
CTTCCTGCCTCTTCCTCCAT+AGG 0.455502 1_2:+4288116 None:intergenic
GTGATAACAAAGGTAGTATG+TGG 0.456986 1_2:-4288163 Msa0050400:CDS
GGCAGCCATAGTTGCAAGCC+AGG 0.457567 1_2:-4285067 Msa0050400:CDS
CTAACAGTGATATTCACATT+TGG 0.460145 1_2:+4283998 None:intergenic
TTCGAAAATCAAAACCAGAT+TGG 0.460880 1_2:-4284883 Msa0050400:CDS
GGCGTGGTTTATGGAGATTT+AGG 0.461670 1_2:-4287761 Msa0050400:CDS
CAAATGTGAATATCACTGTT+AGG 0.464701 1_2:-4283997 Msa0050400:CDS
TATTGGTGTGGCGCTGCCAC+TGG 0.464822 1_2:-4284702 Msa0050400:CDS
ATATCATGATTAAAATCATA+AGG 0.466363 1_2:+4284722 None:intergenic
CTGCCTCTTCCTCCATAGGC+TGG 0.471158 1_2:+4288120 None:intergenic
TGAATAACTGCAGGGACGCT+GGG 0.476846 1_2:-4283925 Msa0050400:CDS
TGACCAGCCTATGGAGGAAG+AGG 0.478610 1_2:-4288123 Msa0050400:CDS
AAGGGATAGTAGTAGAATTG+AGG 0.479550 1_2:-4288247 Msa0050400:five_prime_UTR
GAACATACCATTACTCATAT+GGG 0.479647 1_2:+4286461 None:intergenic
TCAAAGTTAATCAAGGTGGA+TGG 0.480215 1_2:-4284612 Msa0050400:CDS
TAGCAGATTGTACTTCATAC+AGG 0.484544 1_2:-4288765 Msa0050400:intron
CTTGTTCGTGTACCTGGAAT+CGG 0.484864 1_2:-4284454 Msa0050400:CDS
AGATACCTTGTAAAGAGGAT+TGG 0.486463 1_2:-4284295 Msa0050400:CDS
TTTCGATGTGTGGCACGGTA+TGG 0.488737 1_2:-4284253 Msa0050400:CDS
CGGCTTGCATATCAGAGTCT+TGG 0.492350 1_2:-4287782 Msa0050400:CDS
CCCGTCTCCGATTACCATGC+AGG 0.492534 1_2:+4286658 None:intergenic
CATTTCTTAGGAAAATATGC+AGG 0.492742 1_2:-4283817 Msa0050400:CDS
TGTACAGCTTGCATTTACTC+TGG 0.493940 1_2:-4285603 Msa0050400:CDS
ATATGTTGTTAGTTCTTCAT+CGG 0.496853 1_2:+4286787 None:intergenic
AGTAGTAGAATTGAGGGAAA+AGG 0.497157 1_2:-4288240 Msa0050400:five_prime_UTR
ATATATGTAAACAGGAGAAA+AGG 0.499936 1_2:+4286148 None:intergenic
TCAGAAGCTTGACCAGCCTA+TGG 0.501135 1_2:-4288132 Msa0050400:CDS
AAGAGAGATACCTTGTAAAG+AGG 0.504738 1_2:-4284300 Msa0050400:CDS
TAGGTCCAATCCTCTTTACA+AGG 0.508685 1_2:+4284290 None:intergenic
GTAATCTTCAAAGTTAATCA+AGG 0.509932 1_2:-4284619 Msa0050400:CDS
CACTTGCTTATCATTGATTG+TGG 0.513008 1_2:-4284662 Msa0050400:CDS
ATGGCACAGACAAAGTTAGT+TGG 0.513478 1_2:-4286262 Msa0050400:CDS
GGTTGGAGGAACGTGAATCA+TGG 0.513701 1_2:-4286715 Msa0050400:CDS
CTTTGGTTTCTCCTAATAGG+AGG 0.516527 1_2:-4286218 Msa0050400:CDS
AAAGATGAAGAGGAAGTACT+TGG 0.516753 1_2:-4287692 Msa0050400:CDS
CAAGCTTAACAAACAGTGAA+AGG 0.516927 1_2:+4284176 None:intergenic
CAGCCTATGGAGGAAGAGGC+AGG 0.517760 1_2:-4288119 Msa0050400:CDS
ACAGTGATATTCACATTTGG+CGG 0.519018 1_2:+4284001 None:intergenic
ACACGAACAAGTCCTAAACT+TGG 0.520151 1_2:+4284466 None:intergenic
TACCTCAACTTTGCATAGGA+TGG 0.520946 1_2:+4283688 None:intergenic
CACAGTTGTGATGGCAAGGA+GGG 0.523327 1_2:-4283882 Msa0050400:CDS
GTCGTTCTACCTTCCATGAA+AGG 0.523441 1_2:-4286763 Msa0050400:CDS
TTTAGAAGAGGTGGAAAACA+AGG 0.524364 1_2:-4286119 Msa0050400:CDS
ACCTGCATGGTAATCGGAGA+CGG 0.529408 1_2:-4286659 Msa0050400:CDS
AAACAAGGATGGACTTCCCT+TGG 0.530115 1_2:-4286104 Msa0050400:CDS
CAGTTTATATGGAGGACAGC+AGG 0.530247 1_2:-4284116 Msa0050400:CDS
GTATGCAGCTTGTCCAGAAT+AGG 0.531509 1_2:+4285556 None:intergenic
ATGTTGCAGTTATTGTCGCC+TGG 0.531764 1_2:+4285049 None:intergenic
GATTCTTTGCATTGCCGTCA+CGG 0.532435 1_2:-4284911 Msa0050400:CDS
CGGCAATGCAAAGAATCATA+AGG 0.533751 1_2:+4284917 None:intergenic
GCATATGTACCTGATATAGC+CGG 0.535287 1_2:+4286626 None:intergenic
CTGAGACCGGAAAATGAGAT+AGG 0.535427 1_2:+4285627 None:intergenic
CAAAGTTAATCAAGGTGGAT+GGG 0.539107 1_2:-4284611 Msa0050400:CDS
TGTTAAGCTTGAATCTATGA+TGG 0.539727 1_2:-4284164 Msa0050400:CDS
ATTAAGCAAGCCCTTGCTCA+TGG 0.540837 1_2:-4285018 Msa0050400:CDS
AGCAAGGACAAGAATAAGAA+TGG 0.541082 1_2:+4286685 None:intergenic
TGTCCTTGCTGGCACCTGCA+TGG 0.541400 1_2:-4286672 Msa0050400:CDS
CATATGTACCTGATATAGCC+GGG 0.543217 1_2:+4286627 None:intergenic
AACATCTGTAAGTATGGAAG+CGG 0.546719 1_2:-4286182 Msa0050400:CDS
GCAAGCTGTACAGCTGAGAC+CGG 0.546898 1_2:+4285614 None:intergenic
CAAGGATGGACTTCCCTTGG+TGG 0.548086 1_2:-4286101 Msa0050400:CDS
TATATACAACTTTAACTCTA+GGG 0.551474 1_2:+4284989 None:intergenic
AGAGCAGAGTCTTGTTGTTG+TGG 0.553083 1_2:+4289010 None:intergenic
ATCTGGACTATATATCTGGC+CGG 0.553085 1_2:+4284951 None:intergenic
GGTGCGATGCTGATTGGGAA+TGG 0.553849 1_2:+4286808 None:intergenic
CATGAGAGTCTCTTAAATGT+TGG 0.554708 1_2:-4283767 Msa0050400:CDS
TTTCTGCATTGTTGATTCTG+CGG 0.554902 1_2:-4287802 Msa0050400:CDS
GTTCATGTGAAGGAGGATTG+TGG 0.558366 1_2:+4288944 None:intergenic
ACAACAACAGAATGGATGGC+TGG 0.560974 1_2:+4284367 None:intergenic
CAACAGCCGATAAAACTACA+TGG 0.563339 1_2:+4286505 None:intergenic
GTACAATCTGCTACTTGTGA+TGG 0.563353 1_2:+4288775 None:intergenic
AGGTCCTGCGGTCAAGTAAG+TGG 0.564330 1_2:-4283977 Msa0050400:CDS
AGGAAGAGGCAGGAAGACTC+AGG 0.565443 1_2:-4288109 Msa0050400:CDS
TTTGCATTGCCGTCACGGCA+GGG 0.565906 1_2:-4284906 Msa0050400:CDS
TAGGGAAACAACCATGAGCA+AGG 0.568381 1_2:+4285007 None:intergenic
CCTTCCTGTTTACACCGTCC+CGG 0.569084 1_2:-4284326 Msa0050400:CDS
TTGGCCACTTACTTGACCGC+AGG 0.570429 1_2:+4283973 None:intergenic
GCTGAAAATGGCTTCAAGAG+TGG 0.573798 1_2:-4288201 Msa0050400:exon
CAAGTAAGTGGCCAAACCGA+GGG 0.574154 1_2:-4283965 Msa0050400:CDS
AATCAGCCCCATATGAGTAA+TGG 0.574491 1_2:-4286468 Msa0050400:intron
CAACAGAATGGATGGCTGGT+AGG 0.574816 1_2:+4284371 None:intergenic
ATAAAATGACTTGTGATGAA+GGG 0.576000 1_2:+4283716 None:intergenic
AGCAAATGACCTTTCATGGA+AGG 0.576121 1_2:+4286754 None:intergenic
TAACTGCAGGGACGCTGGGG+TGG 0.576829 1_2:-4283921 Msa0050400:CDS
TATACATCAAAGAAGTTCGC+CGG 0.578486 1_2:-4284970 Msa0050400:CDS
GAATAGGCTAAAAGAAGGCA+AGG 0.578682 1_2:+4285572 None:intergenic
CGGAGACGGGATTCTTACCC+CGG 0.579878 1_2:-4286645 Msa0050400:CDS
AAGAGTGGACACTGATGAAG+AGG 0.581426 1_2:-4288186 Msa0050400:CDS
GTATCTCTCTTCTTCCGGGA+CGG 0.583221 1_2:+4284312 None:intergenic
GTCCAGAATAGGCTAAAAGA+AGG 0.583432 1_2:+4285567 None:intergenic
GTCTACACAGAACTTGCAAG+TGG 0.583444 1_2:-4284427 Msa0050400:CDS
AGAATGGATGGCTGGTAGGT+TGG 0.583797 1_2:+4284375 None:intergenic
CCTGCATGGTAATCGGAGAC+GGG 0.583917 1_2:-4286658 Msa0050400:CDS
CAAGATTGTTCATGTGAAGG+AGG 0.586397 1_2:+4288937 None:intergenic
ATTAGGAAACACAGTTGTGA+TGG 0.587624 1_2:-4283891 Msa0050400:CDS
TTCTACAACATATTTCCGAA+CGG 0.589094 1_2:-4287719 Msa0050400:CDS
GAAACACAGTTGTGATGGCA+AGG 0.591010 1_2:-4283886 Msa0050400:CDS
GAAGAGGTGGAAAACAAGGA+TGG 0.591042 1_2:-4286115 Msa0050400:CDS
GAACAACATCACCTTGCTTG+CGG 0.591857 1_2:-4283653 Msa0050400:three_prime_UTR
GTGATATTCACATTTGGCGG+CGG 0.592182 1_2:+4284004 None:intergenic
GAACGGTGTGAAAGATGAAG+AGG 0.595547 1_2:-4287702 Msa0050400:CDS
AGCACTGATTACCGCAAGCA+AGG 0.598133 1_2:+4283642 None:intergenic
ATATAGTCCAGATATCAATT+GGG 0.598472 1_2:-4284941 Msa0050400:CDS
TGATAACAAAGGTAGTATGT+GGG 0.599126 1_2:-4288162 Msa0050400:CDS
TCAAGTAAGTGGCCAAACCG+AGG 0.600769 1_2:-4283966 Msa0050400:CDS
ATGCAAGATTGTTCATGTGA+AGG 0.601677 1_2:+4288934 None:intergenic
ACTAATTGTGATGCTTCACG+TGG 0.603579 1_2:-4283329 Msa0050400:three_prime_UTR
TTACCACATCTTTCGATGTG+TGG 0.605821 1_2:-4284263 Msa0050400:CDS
TGCCATCCTATGCAAAGTTG+AGG 0.606420 1_2:-4283690 Msa0050400:three_prime_UTR
CACTTACCTCAACTTTGCAT+AGG 0.607176 1_2:+4283684 None:intergenic
GACCGGAAAATGAGATAGGT+CGG 0.608967 1_2:+4285631 None:intergenic
CACGAACAAGTCCTAAACTT+GGG 0.614583 1_2:+4284467 None:intergenic
TGCATATCAGAGTCTTGGCG+TGG 0.618746 1_2:-4287777 Msa0050400:CDS
ATAGTAAAGTCTCGATGGCA+TGG 0.620677 1_2:-4284504 Msa0050400:CDS
AATATCACTGTTAGGTCCTG+CGG 0.624494 1_2:-4283989 Msa0050400:CDS
AAGCACGACTTCTTCGAATG+TGG 0.624780 1_2:-4284071 Msa0050400:CDS
AATCAATGATAAGCAAGTGA+AGG 0.625371 1_2:+4284666 None:intergenic
ATTTCTTAGGAAAATATGCA+GGG 0.625694 1_2:-4283816 Msa0050400:CDS
ATGACTTGTGATGAAGGGCA+TGG 0.632939 1_2:+4283721 None:intergenic
AACACTCCGGCAATTACAAG+AGG 0.633389 1_2:+4284586 None:intergenic
TGACTTGTGATGAAGGGCAT+GGG 0.633917 1_2:+4283722 None:intergenic
ATCTTCAAAGTTAATCAAGG+TGG 0.637689 1_2:-4284616 Msa0050400:CDS
AATGCATAGTAAAGTCTCGA+TGG 0.638063 1_2:-4284509 Msa0050400:CDS
CGACTAAAACGACATAACTG+TGG 0.639224 1_2:-4283534 Msa0050400:three_prime_UTR
GAAGCTTGACCAGCCTATGG+AGG 0.640712 1_2:-4288129 Msa0050400:CDS
AAGCTTGAATCTATGATGGA+AGG 0.641141 1_2:-4284160 Msa0050400:CDS
AGGGAAACAACCATGAGCAA+GGG 0.643819 1_2:+4285008 None:intergenic
GAATAACTGCAGGGACGCTG+GGG 0.645282 1_2:-4283924 Msa0050400:CDS
ACATCTTTCGATGTGTGGCA+CGG 0.647935 1_2:-4284258 Msa0050400:CDS
TAAAATCTTAAACTAACTGG+CGG 0.649207 1_2:-4283468 Msa0050400:three_prime_UTR
AACATACCATTACTCATATG+GGG 0.653081 1_2:+4286462 None:intergenic
GATGAATACAGTTTATATGG+AGG 0.656772 1_2:-4284124 Msa0050400:CDS
CCGGGACGGTGTAAACAGGA+AGG 0.657637 1_2:+4284326 None:intergenic
GATGAATTTATTAGGGACGG+AGG 0.657712 1_2:-4285663 Msa0050400:intron
TTACCATGCAGGTGCCAGCA+AGG 0.657855 1_2:+4286669 None:intergenic
CTTGTGATGAAGGGCATGGG+AGG 0.662534 1_2:+4283725 None:intergenic
GATGAAGAGGGTGATAACAA+AGG 0.665526 1_2:-4288173 Msa0050400:CDS
TTATATGGAGGACAGCAGGA+TGG 0.666470 1_2:-4284112 Msa0050400:CDS
ACACAGTTGTGATGGCAAGG+AGG 0.669872 1_2:-4283883 Msa0050400:CDS
AGAGCAAATGACAATGGACA+AGG 0.674340 1_2:-4287602 Msa0050400:intron
TTTGTTAACAGGTACTGCAG+TGG 0.676356 1_2:-4284770 Msa0050400:intron
GTGTTAAGAGCAAATGACAA+TGG 0.677304 1_2:-4287608 Msa0050400:CDS
GTGCCACACATCGAAAGATG+TGG 0.686236 1_2:+4284260 None:intergenic
ATGTTGTAGAAAACATACAA+AGG 0.686924 1_2:+4287731 None:intergenic
GTGATGAAATGAGAAAAGAT+CGG 0.689117 1_2:+4284397 None:intergenic
AAGTAAGTGGCCAAACCGAG+GGG 0.689786 1_2:-4283964 Msa0050400:CDS
TACTGAGCATGATACCACCA+AGG 0.690342 1_2:+4286087 None:intergenic
ACTGAGCATGATACCACCAA+GGG 0.691706 1_2:+4286088 None:intergenic
CTCCTATTAGGAGAAACCAA+AGG 0.694794 1_2:+4286219 None:intergenic
AGAGTGGACACTGATGAAGA+GGG 0.700617 1_2:-4288185 Msa0050400:CDS
CTATTAGGAGAAACCAAAGG+AGG 0.702161 1_2:+4286222 None:intergenic
ATGAAATGAGAAAAGATCGG+TGG 0.702922 1_2:+4284400 None:intergenic
AGTAAGTGGCCAAACCGAGG+GGG 0.709182 1_2:-4283963 Msa0050400:CDS
ATATGTACCTGATATAGCCG+GGG 0.713157 1_2:+4286628 None:intergenic
ATATTTGAGAAGAGGCACCA+AGG 0.717350 1_2:+4287640 None:intergenic
ACATTTAAGAGACTCTCATG+AGG 0.718347 1_2:+4283770 None:intergenic
GTGATGGAGAGTACAAAACT+GGG 0.724792 1_2:+4288791 None:intergenic
GATGGCGTGTTGAATAACAA+CGG 0.731429 1_2:-4284094 Msa0050400:CDS
AGGCGAGTACAAGAATCCAG+TGG 0.751362 1_2:+4284686 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAAAAAAATCAACAAAAT+TGG + chr1_2:4283873-4283892 None:intergenic 10.0%
!! ATAAACATAAATTAAGATTG+AGG + chr1_2:4283828-4283847 None:intergenic 15.0%
!!! TGATTTTTTTTAATACTCTA+AGG - chr1_2:4283880-4283899 Msa0050400:CDS 15.0%
!! AAATTAAAACACATTTATAC+TGG + chr1_2:4283910-4283929 None:intergenic 15.0%
!!! TGTATTGTTTTTTGAAAAAA+TGG - chr1_2:4283962-4283981 Msa0050400:CDS 15.0%
!! TAAACTTTGACAAAAAAAAA+AGG + chr1_2:4284055-4284074 None:intergenic 15.0%
!!! TGAAATATTGTTTTTTCTTA+AGG - chr1_2:4284125-4284144 Msa0050400:CDS 15.0%
!!! GAAATATTGTTTTTTCTTAA+GGG - chr1_2:4284126-4284145 Msa0050400:CDS 15.0%
!!! CTTTTTTCTTTTTACTTTTT+TGG - chr1_2:4285259-4285278 Msa0050400:intron 15.0%
!! ATATCATGATTAAAATCATA+AGG + chr1_2:4287672-4287691 None:intergenic 15.0%
!!! TATGATTTTAATCATGATAT+TGG - chr1_2:4287672-4287691 Msa0050400:CDS 15.0%
!! ATTATATATATGCATTTCTT+AGG - chr1_2:4288562-4288581 Msa0050400:intron 15.0%
!! ATTGATAAATTTAGATGTAT+TGG + chr1_2:4288981-4289000 None:intergenic 15.0%
!!! TTTTTATTTTCACAATCAAG+TGG - chr1_2:4283698-4283717 Msa0050400:three_prime_UTR 20.0%
!!! TTTTATTTTCACAATCAAGT+GGG - chr1_2:4283699-4283718 Msa0050400:three_prime_UTR 20.0%
!!! TTTCTTTTTGGTAGATAAAA+TGG - chr1_2:4284378-4284397 Msa0050400:CDS 20.0%
!! ATAAAAACATATTTGAGAAG+AGG + chr1_2:4284762-4284781 None:intergenic 20.0%
!!! TCAATTGTTTTCTAAACTTT+TGG - chr1_2:4284814-4284833 Msa0050400:intron 20.0%
!!! GTTAATATTTGCATCTTTTA+TGG - chr1_2:4284957-4284976 Msa0050400:CDS 20.0%
!! AAAAAAGGATGGTTATATTA+GGG - chr1_2:4285150-4285169 Msa0050400:intron 20.0%
!!! TATTGATAACAATGAAACTA+CGG + chr1_2:4285387-4285406 None:intergenic 20.0%
!!! ATTTTAATTACAGTTATGGA+AGG + chr1_2:4285418-4285437 None:intergenic 20.0%
!!! GAGTATTTTAATTACAGTTA+TGG + chr1_2:4285422-4285441 None:intergenic 20.0%
!!! TGTTTTTAACGAATTTAAGT+TGG - chr1_2:4286014-4286033 Msa0050400:intron 20.0%
!!! GTTTTTAACGAATTTAAGTT+GGG - chr1_2:4286015-4286034 Msa0050400:intron 20.0%
!! ATATTTAACATCTGTAAGTA+TGG - chr1_2:4286203-4286222 Msa0050400:CDS 20.0%
!! AAATAGTGATATATGTAAAC+AGG + chr1_2:4286254-4286273 None:intergenic 20.0%
!!! ATATATCACTATTTTAGAAG+AGG - chr1_2:4286260-4286279 Msa0050400:CDS 20.0%
!! TACAATGTATTTAAGTACTA+CGG + chr1_2:4286487-4286506 None:intergenic 20.0%
!!! TTTTGTACTTTAACAACTTT+TGG - chr1_2:4286706-4286725 Msa0050400:CDS 20.0%
!!! AACTTTTGGATGAATTTATT+AGG - chr1_2:4286720-4286739 Msa0050400:CDS 20.0%
!!! ACTTTTGGATGAATTTATTA+GGG - chr1_2:4286721-4286740 Msa0050400:CDS 20.0%
!!! TTTCTCTTATATTTTTCGAA+TGG - chr1_2:4287219-4287238 Msa0050400:intron 20.0%
!! TATATACAACTTTAACTCTA+GGG + chr1_2:4287405-4287424 None:intergenic 20.0%
!! AATTGAGAGAAAATATTCAT+TGG + chr1_2:4287574-4287593 None:intergenic 20.0%
!!! TGAATTTACAATTTGTTAAC+AGG - chr1_2:4287610-4287629 Msa0050400:CDS 20.0%
!!! TTTTTATCATTATGTTTGTC+TGG - chr1_2:4287827-4287846 Msa0050400:intron 20.0%
!! GAAAATAAACTCAAACAAAA+AGG + chr1_2:4288838-4288857 None:intergenic 20.0%
!!! AGTTAGTTTAAGATTTTAAG+AGG + chr1_2:4288921-4288940 None:intergenic 20.0%
!! TCTTAAAATCTTAAACTAAC+TGG - chr1_2:4288920-4288939 Msa0050400:five_prime_UTR 20.0%
!!! TTTATTTTCACAATCAAGTG+GGG - chr1_2:4283700-4283719 Msa0050400:three_prime_UTR 25.0%
! TTGAAAATTCCATTGATCTA+TGG + chr1_2:4284027-4284046 None:intergenic 25.0%
! AGAGACAATGTTAAATTCAT+AGG + chr1_2:4284342-4284361 None:intergenic 25.0%
! CCAAAAAGAAAATCAATATG+AGG + chr1_2:4284369-4284388 None:intergenic 25.0%
!!! CCTCATATTGATTTTCTTTT+TGG - chr1_2:4284366-4284385 Msa0050400:CDS 25.0%
! AAAAACACAATCACAAACAT+TGG + chr1_2:4284447-4284466 None:intergenic 25.0%
! ATGTTGTAGAAAACATACAA+AGG + chr1_2:4284663-4284682 None:intergenic 25.0%
! TGCCAGATACAAATTTAAAA+AGG - chr1_2:4284987-4285006 Msa0050400:CDS 25.0%
! GCCAGATACAAATTTAAAAA+GGG - chr1_2:4284988-4285007 Msa0050400:CDS 25.0%
!! TCCCTTTTTAAATTTGTATC+TGG + chr1_2:4284992-4285011 None:intergenic 25.0%
! GAAAAAAGGATGGTTATATT+AGG - chr1_2:4285149-4285168 Msa0050400:intron 25.0%
! TATTTCCCTGTTCTAATATA+GGG - chr1_2:4285183-4285202 Msa0050400:intron 25.0%
! TATAACCCTATATTAGAACA+GGG + chr1_2:4285191-4285210 None:intergenic 25.0%
! TTATAACCCTATATTAGAAC+AGG + chr1_2:4285192-4285211 None:intergenic 25.0%
!!! TAGTTTTATTATGCCTTTAG+AGG - chr1_2:4285230-4285249 Msa0050400:intron 25.0%
! AAAAAAGAAATTGCCTCTAA+AGG + chr1_2:4285246-4285265 None:intergenic 25.0%
!! ATATGTTGTTAGTTCTTCAT+CGG + chr1_2:4285607-4285626 None:intergenic 25.0%
! TAAGAATCTCTTCAAATAGA+TGG + chr1_2:4285856-4285875 None:intergenic 25.0%
! ATAAAACTACATGGAAGATA+TGG + chr1_2:4285880-4285899 None:intergenic 25.0%
!!! TATCTTCCATGTAGTTTTAT+CGG - chr1_2:4285880-4285899 Msa0050400:intron 25.0%
! TTGAAAAGCTTCTTTATCTT+TGG - chr1_2:4286043-4286062 Msa0050400:intron 25.0%
!! ATTGCTGTTGTAATATTAGT+TGG - chr1_2:4286086-4286105 Msa0050400:CDS 25.0%
! ATATATGTAAACAGGAGAAA+AGG + chr1_2:4286246-4286265 None:intergenic 25.0%
! AACACTAATTACATTAAGGA+AGG + chr1_2:4286386-4286405 None:intergenic 25.0%
! TTCCTTAATGTAATTAGTGT+TGG - chr1_2:4286385-4286404 Msa0050400:intron 25.0%
! TCCTTAATGTAATTAGTGTT+GGG - chr1_2:4286386-4286405 Msa0050400:intron 25.0%
! CAATTGTTAGAACAATAACT+CGG + chr1_2:4286642-4286661 None:intergenic 25.0%
! AATGAGTCAAGTTATTCATA+AGG + chr1_2:4286860-4286879 None:intergenic 25.0%
! TATATTGAAATCTTCATGTC+TGG - chr1_2:4286930-4286949 Msa0050400:intron 25.0%
!! ACAGTATTTTCAAACTCTAT+GGG + chr1_2:4287140-4287159 None:intergenic 25.0%
!! TACAGTATTTTCAAACTCTA+TGG + chr1_2:4287141-4287160 None:intergenic 25.0%
! GTATATACAACTTTAACTCT+AGG + chr1_2:4287406-4287425 None:intergenic 25.0%
! TATATAGTCCAGATATCAAT+TGG - chr1_2:4287449-4287468 Msa0050400:intron 25.0%
! ATATAGTCCAGATATCAATT+GGG - chr1_2:4287450-4287469 Msa0050400:intron 25.0%
!! TTTTAATCATGATATTGGTG+TGG - chr1_2:4287677-4287696 Msa0050400:CDS 25.0%
! GTAATCTTCAAAGTTAATCA+AGG - chr1_2:4287772-4287791 Msa0050400:CDS 25.0%
! CATAATGATAAAAAACACTC+CGG + chr1_2:4287821-4287840 None:intergenic 25.0%
! ATACAAAAACAACAACAGAA+TGG + chr1_2:4288035-4288054 None:intergenic 25.0%
! TCAGATGAATACAGTTTATA+TGG - chr1_2:4288264-4288283 Msa0050400:intron 25.0%
!! TTGAATTTTTGAATAACTGC+AGG - chr1_2:4288457-4288476 Msa0050400:intron 25.0%
!! TGAATTTTTGAATAACTGCA+GGG - chr1_2:4288458-4288477 Msa0050400:intron 25.0%
! ATTTCTTAGGAAAATATGCA+GGG - chr1_2:4288575-4288594 Msa0050400:intron 25.0%
!! ATAAAATGACTTGTGATGAA+GGG + chr1_2:4288678-4288697 None:intergenic 25.0%
! TAAAATCTTAAACTAACTGG+CGG - chr1_2:4288923-4288942 Msa0050400:five_prime_UTR 25.0%
CTCAAGTATTTGTATTTGTC+TGG - chr1_2:4283342-4283361 Msa0050400:three_prime_UTR 30.0%
ATCAGAAAGAAGAAGTGATA+TGG + chr1_2:4283529-4283548 None:intergenic 30.0%
CATAAATTAAGATTGAGGAC+TGG + chr1_2:4283823-4283842 None:intergenic 30.0%
TTTCACTTTCCATAGATCAA+TGG - chr1_2:4284015-4284034 Msa0050400:CDS 30.0%
GAAAATTGCATAGCTGAAAA+TGG - chr1_2:4284178-4284197 Msa0050400:CDS 30.0%
TGATAACAAAGGTAGTATGT+GGG - chr1_2:4284229-4284248 Msa0050400:CDS 30.0%
TAAGCTAATATGTAAGCTCT+TGG - chr1_2:4284517-4284536 Msa0050400:CDS 30.0%
ATATGTAAGCTCTTGGAATT+TGG - chr1_2:4284524-4284543 Msa0050400:CDS 30.0%
TTCTACAACATATTTCCGAA+CGG - chr1_2:4284672-4284691 Msa0050400:CDS 30.0%
ACAAATGGAAACAAAATGAG+TGG + chr1_2:4284905-4284924 None:intergenic 30.0%
CTACACTAAATATACACTGT+GGG + chr1_2:4284938-4284957 None:intergenic 30.0%
ACTACACTAAATATACACTG+TGG + chr1_2:4284939-4284958 None:intergenic 30.0%
TAATCAATAGCATGCTATAG+CGG - chr1_2:4285032-4285051 Msa0050400:CDS 30.0%
TGCTAAATGCTTCAGAAAAA+AGG - chr1_2:4285135-4285154 Msa0050400:intron 30.0%
AAATGCTTCAGAAAAAAGGA+TGG - chr1_2:4285139-4285158 Msa0050400:intron 30.0%
GTATTTCCCTGTTCTAATAT+AGG - chr1_2:4285182-4285201 Msa0050400:intron 30.0%
CATTATCAGTTACATAGTCA+TGG + chr1_2:4285310-4285329 None:intergenic 30.0%
TTGCTGCAAAAACTAAAAGA+TGG - chr1_2:4285655-4285674 Msa0050400:intron 30.0%
TGCAAAAACTAAAAGATGGT+TGG - chr1_2:4285659-4285678 Msa0050400:intron 30.0%
AAAAACTAAAAGATGGTTGG+AGG - chr1_2:4285662-4285681 Msa0050400:intron 30.0%
AACATACCATTACTCATATG+GGG + chr1_2:4285932-4285951 None:intergenic 30.0%
GAACATACCATTACTCATAT+GGG + chr1_2:4285933-4285952 None:intergenic 30.0%
!! TATTTTTGTACCACTATGCA+TGG - chr1_2:4285981-4286000 Msa0050400:intron 30.0%
ATATACCAATACCTCCTATT+AGG + chr1_2:4286187-4286206 None:intergenic 30.0%
!! TATCACTATTTTAGAAGAGG+TGG - chr1_2:4286263-4286282 Msa0050400:CDS 30.0%
AGGAGATCAAAAAAAAAGGA+AGG + chr1_2:4286366-4286385 None:intergenic 30.0%
AGGAAGGAGATCAAAAAAAA+AGG + chr1_2:4286370-4286389 None:intergenic 30.0%
AAAGATACGAAAAACACAAG+CGG + chr1_2:4286608-4286627 None:intergenic 30.0%
CGAGTTATTGTTCTAACAAT+TGG - chr1_2:4286640-4286659 Msa0050400:CDS 30.0%
TTGGATGAATTTATTAGGGA+CGG - chr1_2:4286725-4286744 Msa0050400:CDS 30.0%
! GCTTTTTATCTTTCTATTCC+AGG - chr1_2:4286888-4286907 Msa0050400:intron 30.0%
ACATCAGAATAGAAAACTGA+GGG - chr1_2:4287182-4287201 Msa0050400:intron 30.0%
ATCAACATCTAAGTGTCTAA+TGG + chr1_2:4287250-4287269 None:intergenic 30.0%
! GTTTTGCAGAAAGAATATAC+TGG - chr1_2:4287278-4287297 Msa0050400:intron 30.0%
TGATATCTGGACTATATATC+TGG + chr1_2:4287447-4287466 None:intergenic 30.0%
TTCGAAAATCAAAACCAGAT+TGG - chr1_2:4287508-4287527 Msa0050400:intron 30.0%
AATCAATGATAAGCAAGTGA+AGG + chr1_2:4287728-4287747 None:intergenic 30.0%
ATCTTCAAAGTTAATCAAGG+TGG - chr1_2:4287775-4287794 Msa0050400:CDS 30.0%
ATTATGTTTGTCTGGCATTA+CGG - chr1_2:4287835-4287854 Msa0050400:intron 30.0%
GTGATGAAATGAGAAAAGAT+CGG + chr1_2:4287997-4288016 None:intergenic 30.0%
AAAAACAACAACAGAATGGA+TGG + chr1_2:4288031-4288050 None:intergenic 30.0%
TGTTAAGCTTGAATCTATGA+TGG - chr1_2:4288227-4288246 Msa0050400:five_prime_UTR 30.0%
GATGAATACAGTTTATATGG+AGG - chr1_2:4288267-4288286 Msa0050400:intron 30.0%
CTAACAGTGATATTCACATT+TGG + chr1_2:4288396-4288415 None:intergenic 30.0%
CAAATGTGAATATCACTGTT+AGG - chr1_2:4288394-4288413 Msa0050400:intron 30.0%
CATTTCTTAGGAAAATATGC+AGG - chr1_2:4288574-4288593 Msa0050400:intron 30.0%
! CATAAAATGACTTGTGATGA+AGG + chr1_2:4288679-4288698 None:intergenic 30.0%
!!! AGTGCTAGAATCAACTTTTT+TGG - chr1_2:4288766-4288785 Msa0050400:five_prime_UTR 30.0%
AAGAGATCAATTGAGAACTA+TGG + chr1_2:4289037-4289056 None:intergenic 30.0%
ATGCAAGATTGTTCATGTGA+AGG + chr1_2:4283460-4283479 None:intergenic 35.0%
TAGCAGATTGTACTTCATAC+AGG - chr1_2:4283626-4283645 Msa0050400:three_prime_UTR 35.0%
!! TGTTATCTGATTCTGAAGCA+AGG + chr1_2:4283656-4283675 None:intergenic 35.0%
AAGGGATAGTAGTAGAATTG+AGG - chr1_2:4284144-4284163 Msa0050400:CDS 35.0%
AGGGATAGTAGTAGAATTGA+GGG - chr1_2:4284145-4284164 Msa0050400:CDS 35.0%
AGTAGTAGAATTGAGGGAAA+AGG - chr1_2:4284151-4284170 Msa0050400:CDS 35.0%
GTGATAACAAAGGTAGTATG+TGG - chr1_2:4284228-4284247 Msa0050400:CDS 35.0%
!! TTTCTGCATTGTTGATTCTG+CGG - chr1_2:4284589-4284608 Msa0050400:CDS 35.0%
!! AAAGATGAAGAGGAAGTACT+TGG - chr1_2:4284699-4284718 Msa0050400:CDS 35.0%
GATTATCTACTCTCTTACCT+TGG - chr1_2:4284734-4284753 Msa0050400:CDS 35.0%
GTGTTAAGAGCAAATGACAA+TGG - chr1_2:4284783-4284802 Msa0050400:intron 35.0%
ATTCCCTTTGTACAATCTCA+AGG + chr1_2:4284841-4284860 None:intergenic 35.0%
GTGGGAATCATCATTACAAA+TGG + chr1_2:4284920-4284939 None:intergenic 35.0%
! GCATTTAGCAGTTGCAATTT+TGG + chr1_2:4285125-4285144 None:intergenic 35.0%
!!! GTGCATAGTTTTGTATAGAG+TGG - chr1_2:4285343-4285362 Msa0050400:intron 35.0%
AAAACTGACATTTGTAGAGC+AGG - chr1_2:4285510-4285529 Msa0050400:CDS 35.0%
! TGGTTTTTATCTTTGCGTGT+CGG + chr1_2:4285566-4285585 None:intergenic 35.0%
AGCAAGGACAAGAATAAGAA+TGG + chr1_2:4285709-4285728 None:intergenic 35.0%
ATTCTTATTCTTGTCCTTGC+TGG - chr1_2:4285708-4285727 Msa0050400:intron 35.0%
! ACTAATTAGCTTCAGAGAGA+AGG + chr1_2:4285790-4285809 None:intergenic 35.0%
GGAACATACCATTACTCATA+TGG + chr1_2:4285934-4285953 None:intergenic 35.0%
AATTGTCTTGCTACAGAAGT+AGG + chr1_2:4285955-4285974 None:intergenic 35.0%
GCTTCTTTATCTTTGGATAC+AGG - chr1_2:4286050-4286069 Msa0050400:intron 35.0%
TTTATCTTTGGATACAGGTG+TGG - chr1_2:4286055-4286074 Msa0050400:intron 35.0%
!! TTTTTCAGCCTGCAACATTA+TGG - chr1_2:4286110-4286129 Msa0050400:CDS 35.0%
! TTTCTCCTAATAGGAGGTAT+TGG - chr1_2:4286179-4286198 Msa0050400:CDS 35.0%
AACATCTGTAAGTATGGAAG+CGG - chr1_2:4286209-4286228 Msa0050400:CDS 35.0%
TTTAGAAGAGGTGGAAAACA+AGG - chr1_2:4286272-4286291 Msa0050400:CDS 35.0%
GCCCAACACTAATTACATTA+AGG + chr1_2:4286390-4286409 None:intergenic 35.0%
ATAGCTCACAGTTTATGGAT+AGG - chr1_2:4286410-4286429 Msa0050400:intron 35.0%
TAGCTCACAGTTTATGGATA+GGG - chr1_2:4286411-4286430 Msa0050400:intron 35.0%
TGTATTTAAGTACTACGGTC+TGG + chr1_2:4286482-4286501 None:intergenic 35.0%
CTATTATCGCTGAAAGCTTA+GGG + chr1_2:4286519-4286538 None:intergenic 35.0%
TCTATTATCGCTGAAAGCTT+AGG + chr1_2:4286520-4286539 None:intergenic 35.0%
AGCTTTCAGCGATAATAGAA+AGG - chr1_2:4286521-4286540 Msa0050400:CDS 35.0%
!! TAATAGAAAGGTACTGCACT+CGG - chr1_2:4286533-4286552 Msa0050400:intron 35.0%
CAATATTTAACCACGGAGTT+CGG + chr1_2:4286577-4286596 None:intergenic 35.0%
GAGCACACAATATTTAACCA+CGG + chr1_2:4286584-4286603 None:intergenic 35.0%
AGTAAAAAGTTCAGCTAACC+TGG + chr1_2:4286909-4286928 None:intergenic 35.0%
ACACTGACACTTTAGATTGA+AGG - chr1_2:4286960-4286979 Msa0050400:intron 35.0%
CAGGTAAGAATCTGAGAAAA+AGG + chr1_2:4287048-4287067 None:intergenic 35.0%
! TTTTCTCAGATTCTTACCTG+CGG - chr1_2:4287048-4287067 Msa0050400:intron 35.0%
! TTCTGATGTGTTGATATGCT+TGG + chr1_2:4287171-4287190 None:intergenic 35.0%
CACATCAGAATAGAAAACTG+AGG - chr1_2:4287181-4287200 Msa0050400:intron 35.0%
TATACATCAAAGAAGTTCGC+CGG - chr1_2:4287421-4287440 Msa0050400:intron 35.0%
ATAAGGACCCAATTGATATC+TGG + chr1_2:4287460-4287479 None:intergenic 35.0%
AACCAGATTGGAAATGCTTA+TGG - chr1_2:4287520-4287539 Msa0050400:intron 35.0%
TACCATAAGCATTTCCAATC+TGG + chr1_2:4287525-4287544 None:intergenic 35.0%
! CACTTGCTTATCATTGATTG+TGG - chr1_2:4287729-4287748 Msa0050400:CDS 35.0%
TCAAAGTTAATCAAGGTGGA+TGG - chr1_2:4287779-4287798 Msa0050400:CDS 35.0%
CAAAGTTAATCAAGGTGGAT+GGG - chr1_2:4287780-4287799 Msa0050400:CDS 35.0%
AATGCATAGTAAAGTCTCGA+TGG - chr1_2:4287882-4287901 Msa0050400:intron 35.0%
ATGAAATGAGAAAAGATCGG+TGG + chr1_2:4287994-4288013 None:intergenic 35.0%
AAGAGAGATACCTTGTAAAG+AGG - chr1_2:4288091-4288110 Msa0050400:CDS 35.0%
AGATACCTTGTAAAGAGGAT+TGG - chr1_2:4288096-4288115 Msa0050400:CDS 35.0%
CGAAAGATGTGGTAATTCTT+AGG + chr1_2:4288123-4288142 None:intergenic 35.0%
CAAGCTTAACAAACAGTGAA+AGG + chr1_2:4288218-4288237 None:intergenic 35.0%
! AAGCTTGAATCTATGATGGA+AGG - chr1_2:4288231-4288250 Msa0050400:five_prime_UTR 35.0%
ACAGTGATATTCACATTTGG+CGG + chr1_2:4288393-4288412 None:intergenic 35.0%
ATTAGGAAACACAGTTGTGA+TGG - chr1_2:4288500-4288519 Msa0050400:intron 35.0%
ACATTTAAGAGACTCTCATG+AGG + chr1_2:4288624-4288643 None:intergenic 35.0%
CATGAGAGTCTCTTAAATGT+TGG - chr1_2:4288624-4288643 Msa0050400:intron 35.0%
TCAAACAAAAAGGCGATCAA+CGG + chr1_2:4288828-4288847 None:intergenic 35.0%
CAAGATTGTTCATGTGAAGG+AGG + chr1_2:4283457-4283476 None:intergenic 40.0%
! GTGATGGAGAGTACAAAACT+GGG + chr1_2:4283603-4283622 None:intergenic 40.0%
! TGTGATGGAGAGTACAAAAC+TGG + chr1_2:4283604-4283623 None:intergenic 40.0%
! GTACAATCTGCTACTTGTGA+TGG + chr1_2:4283619-4283638 None:intergenic 40.0%
GATGAAGAGGGTGATAACAA+AGG - chr1_2:4284218-4284237 Msa0050400:CDS 40.0%
CAAAGGTAGTATGTGGGATT+TGG - chr1_2:4284235-4284254 Msa0050400:CDS 40.0%
TCTTCATCTTTCACACCGTT+CGG + chr1_2:4284690-4284709 None:intergenic 40.0%
!! ATATTTGAGAAGAGGCACCA+AGG + chr1_2:4284754-4284773 None:intergenic 40.0%
AGAGCAAATGACAATGGACA+AGG - chr1_2:4284789-4284808 Msa0050400:intron 40.0%
TGGTCCTTGAGATTGTACAA+AGG - chr1_2:4284834-4284853 Msa0050400:intron 40.0%
GGTCCTTGAGATTGTACAAA+GGG - chr1_2:4284835-4284854 Msa0050400:intron 40.0%
ATTGGAAATCTGTAGCAGAG+TGG - chr1_2:4285066-4285085 Msa0050400:CDS 40.0%
! CTATGTTTTGCTCAAGACCT+AGG - chr1_2:4285284-4285303 Msa0050400:intron 40.0%
AGCAAATGACCTTTCATGGA+AGG + chr1_2:4285640-4285659 None:intergenic 40.0%
TTGCAGCAAATGACCTTTCA+TGG + chr1_2:4285644-4285663 None:intergenic 40.0%
ATATGTACCTGATATAGCCG+GGG + chr1_2:4285766-4285785 None:intergenic 40.0%
CATATGTACCTGATATAGCC+GGG + chr1_2:4285767-4285786 None:intergenic 40.0%
GCATATGTACCTGATATAGC+CGG + chr1_2:4285768-4285787 None:intergenic 40.0%
CAACAGCCGATAAAACTACA+TGG + chr1_2:4285889-4285908 None:intergenic 40.0%
!!! CATGTAGTTTTATCGGCTGT+TGG - chr1_2:4285887-4285906 Msa0050400:intron 40.0%
!!! TAGTTTTATCGGCTGTTGGT+GGG - chr1_2:4285891-4285910 Msa0050400:intron 40.0%
AATCAGCCCCATATGAGTAA+TGG - chr1_2:4285923-4285942 Msa0050400:intron 40.0%
CTAAATGCTTCCATGCATAG+TGG + chr1_2:4285994-4286013 None:intergenic 40.0%
ATGGCACAGACAAAGTTAGT+TGG - chr1_2:4286129-4286148 Msa0050400:CDS 40.0%
AGAAACCAAAGGAGGACAAT+TGG + chr1_2:4286164-4286183 None:intergenic 40.0%
CTATTAGGAGAAACCAAAGG+AGG + chr1_2:4286172-4286191 None:intergenic 40.0%
! CTCCTTTGGTTTCTCCTAAT+AGG - chr1_2:4286170-4286189 Msa0050400:CDS 40.0%
CTCCTATTAGGAGAAACCAA+AGG + chr1_2:4286175-4286194 None:intergenic 40.0%
! CTTTGGTTTCTCCTAATAGG+AGG - chr1_2:4286173-4286192 Msa0050400:CDS 40.0%
GGTATCATGCTCAGTATAAC+AGG - chr1_2:4286311-4286330 Msa0050400:CDS 40.0%
TCACAGTTTATGGATAGGGT+AGG - chr1_2:4286415-4286434 Msa0050400:intron 40.0%
GATGAATTTATTAGGGACGG+AGG - chr1_2:4286728-4286747 Msa0050400:CDS 40.0%
TGTACAGCTTGCATTTACTC+TGG - chr1_2:4286788-4286807 Msa0050400:CDS 40.0%
GAATAGGCTAAAAGAAGGCA+AGG + chr1_2:4286822-4286841 None:intergenic 40.0%
! TGCCTTCTTTTAGCCTATTC+TGG - chr1_2:4286822-4286841 Msa0050400:CDS 40.0%
GTCCAGAATAGGCTAAAAGA+AGG + chr1_2:4286827-4286846 None:intergenic 40.0%
!! TAACATGTTAGTCTTGTGCC+TGG - chr1_2:4287074-4287093 Msa0050400:intron 40.0%
GAAACTATGACGCACTAACA+CGG + chr1_2:4287110-4287129 None:intergenic 40.0%
TGTTAGTGCGTCATAGTTTC+TGG - chr1_2:4287110-4287129 Msa0050400:intron 40.0%
TGCAGAAAGAATATACTGGC+CGG - chr1_2:4287282-4287301 Msa0050400:intron 40.0%
GCTGTTGCAACAACAAATAC+CGG + chr1_2:4287304-4287323 None:intergenic 40.0%
!! GGTATTTGTTGTTGCAACAG+CGG - chr1_2:4287303-4287322 Msa0050400:intron 40.0%
ATCTGGACTATATATCTGGC+CGG + chr1_2:4287443-4287462 None:intergenic 40.0%
CGGCAATGCAAAGAATCATA+AGG + chr1_2:4287477-4287496 None:intergenic 40.0%
! TTTGTTAACAGGTACTGCAG+TGG - chr1_2:4287621-4287640 Msa0050400:CDS 40.0%
ATAGTAAAGTCTCGATGGCA+TGG - chr1_2:4287887-4287906 Msa0050400:intron 40.0%
CACGAACAAGTCCTAAACTT+GGG + chr1_2:4287927-4287946 None:intergenic 40.0%
ACACGAACAAGTCCTAAACT+TGG + chr1_2:4287928-4287947 None:intergenic 40.0%
! ACAAGGTATCTCTCTTCTTC+CGG + chr1_2:4288087-4288106 None:intergenic 40.0%
TAGGTCCAATCCTCTTTACA+AGG + chr1_2:4288104-4288123 None:intergenic 40.0%
TTACCACATCTTTCGATGTG+TGG - chr1_2:4288128-4288147 Msa0050400:CDS 40.0%
GATGGCGTGTTGAATAACAA+CGG - chr1_2:4288297-4288316 Msa0050400:intron 40.0%
AATATCACTGTTAGGTCCTG+CGG - chr1_2:4288402-4288421 Msa0050400:intron 40.0%
! AAATTCAAGTTCATCCCCCT+CGG + chr1_2:4288445-4288464 None:intergenic 40.0%
TACCTCAACTTTGCATAGGA+TGG + chr1_2:4288706-4288725 None:intergenic 40.0%
CACTTACCTCAACTTTGCAT+AGG + chr1_2:4288710-4288729 None:intergenic 40.0%
CGACTAAAACGACATAACTG+TGG - chr1_2:4288857-4288876 Msa0050400:five_prime_UTR 40.0%
ACTAATTGTGATGCTTCACG+TGG - chr1_2:4289062-4289081 Msa0050400:five_prime_UTR 40.0%
!! AGAGCAGAGTCTTGTTGTTG+TGG + chr1_2:4283384-4283403 None:intergenic 45.0%
!! GTCGTTTTGCTCAGCTTGTT+AGG + chr1_2:4283422-4283441 None:intergenic 45.0%
GTTCATGTGAAGGAGGATTG+TGG + chr1_2:4283450-4283469 None:intergenic 45.0%
GCTGAAAATGGCTTCAAGAG+TGG - chr1_2:4284190-4284209 Msa0050400:CDS 45.0%
AAGAGTGGACACTGATGAAG+AGG - chr1_2:4284205-4284224 Msa0050400:CDS 45.0%
AGAGTGGACACTGATGAAGA+GGG - chr1_2:4284206-4284225 Msa0050400:CDS 45.0%
GGCGTGGTTTATGGAGATTT+AGG - chr1_2:4284630-4284649 Msa0050400:CDS 45.0%
GAACGGTGTGAAAGATGAAG+AGG - chr1_2:4284689-4284708 Msa0050400:CDS 45.0%
ATAGCATGCTATAGCGGCAT+TGG - chr1_2:4285038-4285057 Msa0050400:CDS 45.0%
CAGTTACATAGTCATGGCCT+AGG + chr1_2:4285304-4285323 None:intergenic 45.0%
ACTGACATTTGTAGAGCAGG+TGG - chr1_2:4285513-4285532 Msa0050400:CDS 45.0%
GTCGTTCTACCTTCCATGAA+AGG - chr1_2:4285628-4285647 Msa0050400:CDS 45.0%
ATTCTTACCCCGGCTATATC+AGG - chr1_2:4285756-4285775 Msa0050400:intron 45.0%
!!! GTAGTTTTATCGGCTGTTGG+TGG - chr1_2:4285890-4285909 Msa0050400:intron 45.0%
TGTCTGTGCCATAATGTTGC+AGG + chr1_2:4286121-4286140 None:intergenic 45.0%
TTGCTCCAATTGTCCTCCTT+TGG - chr1_2:4286156-4286175 Msa0050400:CDS 45.0%
GAAGAGGTGGAAAACAAGGA+TGG - chr1_2:4286276-4286295 Msa0050400:CDS 45.0%
! AAACAAGGATGGACTTCCCT+TGG - chr1_2:4286287-4286306 Msa0050400:CDS 45.0%
ACTGAGCATGATACCACCAA+GGG + chr1_2:4286306-4286325 None:intergenic 45.0%
TACTGAGCATGATACCACCA+AGG + chr1_2:4286307-4286326 None:intergenic 45.0%
TGGGCATAGCTCACAGTTTA+TGG - chr1_2:4286405-4286424 Msa0050400:intron 45.0%
CTCGGAGATGTAGGCATAAT+TGG - chr1_2:4286551-4286570 Msa0050400:intron 45.0%
GACCGGAAAATGAGATAGGT+CGG + chr1_2:4286763-4286782 None:intergenic 45.0%
CTGAGACCGGAAAATGAGAT+AGG + chr1_2:4286767-4286786 None:intergenic 45.0%
GTATGCAGCTTGTCCAGAAT+AGG + chr1_2:4286838-4286857 None:intergenic 45.0%
GTGAATCTAGTGTCCAACAC+CGG - chr1_2:4286982-4287001 Msa0050400:intron 45.0%
GACTAACATGTTAACACCGC+AGG + chr1_2:4287067-4287086 None:intergenic 45.0%
ATGTTGCAGTTATTGTCGCC+TGG + chr1_2:4287345-4287364 None:intergenic 45.0%
ATTAAGCAAGCCCTTGCTCA+TGG - chr1_2:4287373-4287392 Msa0050400:intron 45.0%
AGGGAAACAACCATGAGCAA+GGG + chr1_2:4287386-4287405 None:intergenic 45.0%
TAGGGAAACAACCATGAGCA+AGG + chr1_2:4287387-4287406 None:intergenic 45.0%
GATTCTTTGCATTGCCGTCA+CGG - chr1_2:4287480-4287499 Msa0050400:intron 45.0%
TGGGTTCCTCTTGTAATTGC+CGG - chr1_2:4287799-4287818 Msa0050400:CDS 45.0%
AACACTCCGGCAATTACAAG+AGG + chr1_2:4287808-4287827 None:intergenic 45.0%
! TTAGGACTTGTTCGTGTACC+TGG - chr1_2:4287931-4287950 Msa0050400:intron 45.0%
CTTGTTCGTGTACCTGGAAT+CGG - chr1_2:4287937-4287956 Msa0050400:intron 45.0%
GTCTACACAGAACTTGCAAG+TGG - chr1_2:4287964-4287983 Msa0050400:intron 45.0%
ACAACAACAGAATGGATGGC+TGG + chr1_2:4288027-4288046 None:intergenic 45.0%
! CAAGGTATCTCTCTTCTTCC+GGG + chr1_2:4288086-4288105 None:intergenic 45.0%
ACATCTTTCGATGTGTGGCA+CGG - chr1_2:4288133-4288152 Msa0050400:CDS 45.0%
ACTCTTCGTCTTTCTTGTGC+AGG + chr1_2:4288173-4288192 None:intergenic 45.0%
CAGTTTATATGGAGGACAGC+AGG - chr1_2:4288275-4288294 Msa0050400:intron 45.0%
TTATATGGAGGACAGCAGGA+TGG - chr1_2:4288279-4288298 Msa0050400:intron 45.0%
GTGATATTCACATTTGGCGG+CGG + chr1_2:4288390-4288409 None:intergenic 45.0%
GAAACACAGTTGTGATGGCA+AGG - chr1_2:4288505-4288524 Msa0050400:intron 45.0%
! TGACTTGTGATGAAGGGCAT+GGG + chr1_2:4288672-4288691 None:intergenic 45.0%
! ATGACTTGTGATGAAGGGCA+TGG + chr1_2:4288673-4288692 None:intergenic 45.0%
TGCCATCCTATGCAAAGTTG+AGG - chr1_2:4288701-4288720 Msa0050400:intron 45.0%
GAACAACATCACCTTGCTTG+CGG - chr1_2:4288738-4288757 Msa0050400:intron 45.0%
TCAGAAGCTTGACCAGCCTA+TGG - chr1_2:4284259-4284278 Msa0050400:CDS 50.0%
CGGCTTGCATATCAGAGTCT+TGG - chr1_2:4284609-4284628 Msa0050400:CDS 50.0%
TGCATATCAGAGTCTTGGCG+TGG - chr1_2:4284614-4284633 Msa0050400:CDS 50.0%
CAGAGTCTTGGCGTGGTTTA+TGG - chr1_2:4284621-4284640 Msa0050400:CDS 50.0%
!! ATAGCGGCATTGGCTGCTAT+TGG - chr1_2:4285048-4285067 Msa0050400:CDS 50.0%
!! GAGTGGTTTGCTGCATTAGC+TGG - chr1_2:4285083-4285102 Msa0050400:intron 50.0%
! TCATCGGTGCGATGCTGATT+GGG + chr1_2:4285591-4285610 None:intergenic 50.0%
TTCATCGGTGCGATGCTGAT+TGG + chr1_2:4285592-4285611 None:intergenic 50.0%
GGTTGGAGGAACGTGAATCA+TGG - chr1_2:4285676-4285695 Msa0050400:intron 50.0%
ACCTGCATGGTAATCGGAGA+CGG - chr1_2:4285732-4285751 Msa0050400:intron 50.0%
! ATCGGCTGTTGGTGGGATTA+AGG - chr1_2:4285898-4285917 Msa0050400:intron 50.0%
! CGCCGACCTATCTCATTTTC+CGG - chr1_2:4286758-4286777 Msa0050400:CDS 50.0%
! ATTTTCGAACCCTGCCGTGA+CGG + chr1_2:4287497-4287516 None:intergenic 50.0%
AGGCGAGTACAAGAATCCAG+TGG + chr1_2:4287708-4287727 None:intergenic 50.0%
GTCTCGATGGCATGGATTCT+CGG - chr1_2:4287895-4287914 Msa0050400:intron 50.0%
TCTCGATGGCATGGATTCTC+GGG - chr1_2:4287896-4287915 Msa0050400:intron 50.0%
! GTGTAGACTAGTCCGATTCC+AGG + chr1_2:4287952-4287971 None:intergenic 50.0%
AGAATGGATGGCTGGTAGGT+TGG + chr1_2:4288019-4288038 None:intergenic 50.0%
CAACAGAATGGATGGCTGGT+AGG + chr1_2:4288023-4288042 None:intergenic 50.0%
GTATCTCTCTTCTTCCGGGA+CGG + chr1_2:4288082-4288101 None:intergenic 50.0%
GTGCCACACATCGAAAGATG+TGG + chr1_2:4288134-4288153 None:intergenic 50.0%
TTTCGATGTGTGGCACGGTA+TGG - chr1_2:4288138-4288157 Msa0050400:CDS 50.0%
TCAAGTAAGTGGCCAAACCG+AGG - chr1_2:4288425-4288444 Msa0050400:intron 50.0%
CAAGTAAGTGGCCAAACCGA+GGG - chr1_2:4288426-4288445 Msa0050400:intron 50.0%
AAGTAAGTGGCCAAACCGAG+GGG - chr1_2:4288427-4288446 Msa0050400:intron 50.0%
TTGAATAACTGCAGGGACGC+TGG - chr1_2:4288465-4288484 Msa0050400:intron 50.0%
TGAATAACTGCAGGGACGCT+GGG - chr1_2:4288466-4288485 Msa0050400:intron 50.0%
GCTGGGGTGGTTCACATATT+AGG - chr1_2:4288483-4288502 Msa0050400:intron 50.0%
ACACAGTTGTGATGGCAAGG+AGG - chr1_2:4288508-4288527 Msa0050400:intron 50.0%
CACAGTTGTGATGGCAAGGA+GGG - chr1_2:4288509-4288528 Msa0050400:intron 50.0%
!! AGCACTGATTACCGCAAGCA+AGG + chr1_2:4288752-4288771 None:intergenic 50.0%
GAAGCTTGACCAGCCTATGG+AGG - chr1_2:4284262-4284281 Msa0050400:CDS 55.0%
TGACCAGCCTATGGAGGAAG+AGG - chr1_2:4284268-4284287 Msa0050400:CDS 55.0%
CTTCCTGCCTCTTCCTCCAT+AGG + chr1_2:4284278-4284297 None:intergenic 55.0%
AGGAAGAGGCAGGAAGACTC+AGG - chr1_2:4284282-4284301 Msa0050400:CDS 55.0%
! GGTGCGATGCTGATTGGGAA+TGG + chr1_2:4285586-4285605 None:intergenic 55.0%
TTACCATGCAGGTGCCAGCA+AGG + chr1_2:4285725-4285744 None:intergenic 55.0%
GCTGGCACCTGCATGGTAAT+CGG - chr1_2:4285726-4285745 Msa0050400:intron 55.0%
CCTGCATGGTAATCGGAGAC+GGG - chr1_2:4285733-4285752 Msa0050400:intron 55.0%
! CAAGGATGGACTTCCCTTGG+TGG - chr1_2:4286290-4286309 Msa0050400:CDS 55.0%
GGTCATTGAGCCCTGTGGTA+CGG - chr1_2:4286436-4286455 Msa0050400:intron 55.0%
TACCCCTGAACCGTACCACA+GGG + chr1_2:4286449-4286468 None:intergenic 55.0%
TTACCCCTGAACCGTACCAC+AGG + chr1_2:4286450-4286469 None:intergenic 55.0%
GGTACTGCACTCGGAGATGT+AGG - chr1_2:4286542-4286561 Msa0050400:intron 55.0%
GCATAATTGGCCGAACTCCG+TGG - chr1_2:4286564-4286583 Msa0050400:intron 55.0%
GCAAGCTGTACAGCTGAGAC+CGG + chr1_2:4286780-4286799 None:intergenic 55.0%
CCACATGTGTCTGTGTGTGC+CGG + chr1_2:4287004-4287023 None:intergenic 55.0%
TAACACGGACACGAGACACC+AGG + chr1_2:4287095-4287114 None:intergenic 55.0%
! TGTCGCCTGGCTTGCAACTA+TGG + chr1_2:4287332-4287351 None:intergenic 55.0%
TTTGCATTGCCGTCACGGCA+GGG - chr1_2:4287485-4287504 Msa0050400:intron 55.0%
ATGGCATGGATTCTCGGGCT+TGG - chr1_2:4287901-4287920 Msa0050400:intron 55.0%
CCTTCCTGTTTACACCGTCC+CGG - chr1_2:4288065-4288084 Msa0050400:intron 55.0%
TCTTCCGGGACGGTGTAAAC+AGG + chr1_2:4288072-4288091 None:intergenic 55.0%
AGGTCCTGCGGTCAAGTAAG+TGG - chr1_2:4288414-4288433 Msa0050400:intron 55.0%
TTGGCCACTTACTTGACCGC+AGG + chr1_2:4288421-4288440 None:intergenic 55.0%
AGTAAGTGGCCAAACCGAGG+GGG - chr1_2:4288428-4288447 Msa0050400:intron 55.0%
CAAGTTCATCCCCCTCGGTT+TGG + chr1_2:4288440-4288459 None:intergenic 55.0%
GAATAACTGCAGGGACGCTG+GGG - chr1_2:4288467-4288486 Msa0050400:intron 55.0%
! CTTGTGATGAAGGGCATGGG+AGG + chr1_2:4288669-4288688 None:intergenic 55.0%
CTGCCTCTTCCTCCATAGGC+TGG + chr1_2:4284274-4284293 None:intergenic 60.0%
CAGCCTATGGAGGAAGAGGC+AGG - chr1_2:4284272-4284291 Msa0050400:CDS 60.0%
TGTCCTTGCTGGCACCTGCA+TGG - chr1_2:4285719-4285738 Msa0050400:intron 60.0%
CCCGTCTCCGATTACCATGC+AGG + chr1_2:4285736-4285755 None:intergenic 60.0%
CGGAGACGGGATTCTTACCC+CGG - chr1_2:4285746-4285765 Msa0050400:intron 60.0%
GGGTAGGTCATTGAGCCCTG+TGG - chr1_2:4286431-4286450 Msa0050400:intron 60.0%
TGAGCCCTGTGGTACGGTTC+AGG - chr1_2:4286442-4286461 Msa0050400:intron 60.0%
GAGCCCTGTGGTACGGTTCA+GGG - chr1_2:4286443-4286462 Msa0050400:intron 60.0%
AGCCCTGTGGTACGGTTCAG+GGG - chr1_2:4286444-4286463 Msa0050400:intron 60.0%
! GTGTCTGTGTGTGCCGGTGT+TGG + chr1_2:4286998-4287017 None:intergenic 60.0%
CCGGCACACACAGACACATG+TGG - chr1_2:4287001-4287020 Msa0050400:intron 60.0%
GGCAGCCATAGTTGCAAGCC+AGG - chr1_2:4287324-4287343 Msa0050400:intron 60.0%
CTTTGCATTGCCGTCACGGC+AGG - chr1_2:4287484-4287503 Msa0050400:intron 60.0%
TATTGGTGTGGCGCTGCCAC+TGG - chr1_2:4287689-4287708 Msa0050400:CDS 60.0%
CTCGGGCTTGGCCCAAGTTT+AGG - chr1_2:4287913-4287932 Msa0050400:intron 60.0%
CCGGGACGGTGTAAACAGGA+AGG + chr1_2:4288068-4288087 None:intergenic 60.0%
TAACTGCAGGGACGCTGGGG+TGG - chr1_2:4288470-4288489 Msa0050400:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 4283322 4289091 4283322 ID=Msa0050400;Name=Msa0050400
chr1_2 mRNA 4283322 4289091 4283322 ID=Msa0050400-mRNA-1;Parent=Msa0050400;Name=Msa0050400-mRNA-1;_AED=0.29;_eAED=0.29;_QI=376|0.77|0.8|1|0.77|0.6|10|367|785
chr1_2 exon 4283322 4283366 4283322 ID=Msa0050400-mRNA-1:exon:1070;Parent=Msa0050400-mRNA-1
chr1_2 exon 4283426 4284781 4283426 ID=Msa0050400-mRNA-1:exon:1069;Parent=Msa0050400-mRNA-1
chr1_2 exon 4284872 4285090 4284872 ID=Msa0050400-mRNA-1:exon:1068;Parent=Msa0050400-mRNA-1
chr1_2 exon 4285504 4285671 4285504 ID=Msa0050400-mRNA-1:exon:1067;Parent=Msa0050400-mRNA-1
chr1_2 exon 4286081 4286341 4286081 ID=Msa0050400-mRNA-1:exon:1066;Parent=Msa0050400-mRNA-1
chr1_2 exon 4286469 4286546 4286469 ID=Msa0050400-mRNA-1:exon:1065;Parent=Msa0050400-mRNA-1
chr1_2 exon 4286636 4286881 4286636 ID=Msa0050400-mRNA-1:exon:1064;Parent=Msa0050400-mRNA-1
chr1_2 exon 4287603 4287828 4287603 ID=Msa0050400-mRNA-1:exon:1063;Parent=Msa0050400-mRNA-1
chr1_2 exon 4288091 4288266 4288091 ID=Msa0050400-mRNA-1:exon:1062;Parent=Msa0050400-mRNA-1
chr1_2 exon 4288766 4289091 4288766 ID=Msa0050400-mRNA-1:exon:1061;Parent=Msa0050400-mRNA-1
chr1_2 five_prime_UTR 4288766 4289091 4288766 ID=Msa0050400-mRNA-1:five_prime_utr;Parent=Msa0050400-mRNA-1
chr1_2 five_prime_UTR 4288217 4288266 4288217 ID=Msa0050400-mRNA-1:five_prime_utr;Parent=Msa0050400-mRNA-1
chr1_2 CDS 4288091 4288216 4288091 ID=Msa0050400-mRNA-1:cds;Parent=Msa0050400-mRNA-1
chr1_2 CDS 4287603 4287828 4287603 ID=Msa0050400-mRNA-1:cds;Parent=Msa0050400-mRNA-1
chr1_2 CDS 4286636 4286881 4286636 ID=Msa0050400-mRNA-1:cds;Parent=Msa0050400-mRNA-1
chr1_2 CDS 4286469 4286546 4286469 ID=Msa0050400-mRNA-1:cds;Parent=Msa0050400-mRNA-1
chr1_2 CDS 4286081 4286341 4286081 ID=Msa0050400-mRNA-1:cds;Parent=Msa0050400-mRNA-1
chr1_2 CDS 4285504 4285671 4285504 ID=Msa0050400-mRNA-1:cds;Parent=Msa0050400-mRNA-1
chr1_2 CDS 4284872 4285090 4284872 ID=Msa0050400-mRNA-1:cds;Parent=Msa0050400-mRNA-1
chr1_2 CDS 4283748 4284781 4283748 ID=Msa0050400-mRNA-1:cds;Parent=Msa0050400-mRNA-1
chr1_2 three_prime_UTR 4283426 4283747 4283426 ID=Msa0050400-mRNA-1:three_prime_utr;Parent=Msa0050400-mRNA-1
chr1_2 three_prime_UTR 4283322 4283366 4283322 ID=Msa0050400-mRNA-1:three_prime_utr;Parent=Msa0050400-mRNA-1
Gene Sequence

>Msa0050400

ATGGCTTCAAGAGTGGACACTGATGAAGAGGGTGATAACAAAGGTAGTATGTGGGATTTGGATCAGAAGCTTGACCAGCCTATGGAGGAAGAGGCAGGAAGACTCAGGAATATGTACAGAGAAAAAAAATTTTCTGCATTGTTGATTCTGCGGCTTGCATATCAGAGTCTTGGCGTGGTTTATGGAGATTTAGGCACTTCACCTTTGTATGTTTTCTACAACATATTTCCGAACGGTGTGAAAGATGAAGAGGAAGTACTTGGAGCTCTTTCTTTGATTATCTACTCTCTTACCTTGGTGCCTCTTCTCAAATATGTTTTTATTGTGTTAAGAGCAAATGACAATGGACAAGGTGGAACATTTGCGCTTTATTCTTTGCTTTGCCGACACGCAAAGATAAAAACCATTCCCAATCAGCATCGCACCGATGAAGAACTAACAACATATAGTCGTTCTACCTTCCATGAAAGGTCATTTGCTGCAAAAACTAAAAGATGGTTGGAGGAACGTGAATCATGGAAGAGTGCCATTCTTATTCTTGTCCTTGCTGGCACCTGCATGGTAATCGGAGACGGGATTCTTACCCCGGCTATATCAGAGATTCTTATCCATATCTTCCATGTAGTTTTATCGGCTGTTGGTGGGATTAAGGTAAATCAGCCCCATATGAGTAATGGTGTGGTAGTTCTGATTGCTGTTGTAATATTAGTTGGATTTTTCAGCCTGCAACATTATGGCACAGACAAAGTTAGTTGGCTCTTTGCTCCAATTGTCCTCCTTTGGTTTCTCCTAATAGGAGGTATTGGTATATTTAACATCTGTAAGTATGGAAGCGGAGTTCTAAAAGCCTTTTCTCCTGTTTACATATATCACTATTTTAGAAGAGGTGGAAAACAAGGATGGACTTCCCTTGGTGGTATCATGCTCAGTATAACAGGGACGGAGGCTCTTTTCGCCGACCTATCTCATTTTCCGGTCTCAGCTGTACAGCTTGCATTTACTCTGGTTGTGTTTCCTTGCCTTCTTTTAGCCTATTCTGGACAAGCTGCATACCTTATGAATAACTTGACTCATTCAAAAGATGCTTTTTATCTTTCTATTCCAGCGGCAGCCATAGTTGCAAGCCAGGCGACAATAACTGCAACATTTTCGATTATTAAGCAAGCCCTTGCTCATGGTTGTTTCCCTAGAGTTAAAGTTGTATATACATCAAAGAAGTTCGCCGGCCAGATATATAGTCCAGATATCAATTGGGTCCTTATGATTCTTTGCATTGCCGTCACGGCAGGGTTCGAAAATCAAAACCAGATTGGAAATGCTTATGGTACTGCAGTGGTGATTGTCTTTCTCGTTACTACATTCCTTATGATTTTAATCATGATATTGGTGTGGCGCTGCCACTGGATTCTTGTACTCGCCTTCACTTGCTTATCATTGATTGTGGAATTGTCATACTTCTTCTCTGTAATCTTCAAAGTTAATCAAGGTGGATGGGTTCCTCTTGTAATTGCCGGAGTGTTTTTTATCATTATGTTTGTCTGGCATTACGGTACAGTGAAACGCTACGAATTTGAAATGCATAGTAAAGTCTCGATGGCATGGATTCTCGGGCTTGGCCCAAGTTTAGGACTTGTTCGTGTACCTGGAATCGGACTAGTCTACACAGAACTTGCAAGTGGAGTACCACCGATCTTTTCTCATTTCATCACCAACCTACCAGCCATCCATTCTGTTGTTGTTTTTGTATGCGTCAAATACCTTCCTGTTTACACCGTCCCGGAAGAAGAGAGATACCTTGTAAAGAGGATTGGACCTAAGAATTACCACATCTTTCGATGTGTGGCACGGTATGGCTACAAAGACCTGCACAAGAAAGACGAAGAGTTTGAGAAAAAACTCTTTGATAACCTTTCACTGTTTGTTAAGCTTGAATCTATGATGGAAGGTTGTTCAGACTCAGATGAATACAGTTTATATGGAGGACAGCAGGATGGCGTGTTGAATAACAACGGAAGCACGACTTCTTCGAATGTGGAGTTAACAATTAACTCGATAGATTCAATAGTACAAGTTCGATCACCGCCGCCAAATGTGAATATCACTGTTAGGTCCTGCGGTCAAGTAAGTGGCCAAACCGAGGGGGATGAACTTGAATTTTTGAATAACTGCAGGGACGCTGGGGTGGTTCACATATTAGGAAACACAGTTGTGATGGCAAGGAGGGATTCAAATATTTTCAAGAAAGTAGCTGTTGATTATATATATGCATTTCTTAGGAAAATATGCAGGGAAAATAGTGTGATCTTCAATGTTCCTCATGAGAGTCTCTTAAATGTTGGTCAGATATTCTATGTATAG

Protein sequence

>Msa0050400

MASRVDTDEEGDNKGSMWDLDQKLDQPMEEEAGRLRNMYREKKFSALLILRLAYQSLGVVYGDLGTSPLYVFYNIFPNGVKDEEEVLGALSLIIYSLTLVPLLKYVFIVLRANDNGQGGTFALYSLLCRHAKIKTIPNQHRTDEELTTYSRSTFHERSFAAKTKRWLEERESWKSAILILVLAGTCMVIGDGILTPAISEILIHIFHVVLSAVGGIKVNQPHMSNGVVVLIAVVILVGFFSLQHYGTDKVSWLFAPIVLLWFLLIGGIGIFNICKYGSGVLKAFSPVYIYHYFRRGGKQGWTSLGGIMLSITGTEALFADLSHFPVSAVQLAFTLVVFPCLLLAYSGQAAYLMNNLTHSKDAFYLSIPAAAIVASQATITATFSIIKQALAHGCFPRVKVVYTSKKFAGQIYSPDINWVLMILCIAVTAGFENQNQIGNAYGTAVVIVFLVTTFLMILIMILVWRCHWILVLAFTCLSLIVELSYFFSVIFKVNQGGWVPLVIAGVFFIIMFVWHYGTVKRYEFEMHSKVSMAWILGLGPSLGLVRVPGIGLVYTELASGVPPIFSHFITNLPAIHSVVVFVCVKYLPVYTVPEEERYLVKRIGPKNYHIFRCVARYGYKDLHKKDEEFEKKLFDNLSLFVKLESMMEGCSDSDEYSLYGGQQDGVLNNNGSTTSSNVELTINSIDSIVQVRSPPPNVNITVRSCGQVSGQTEGDELEFLNNCRDAGVVHILGNTVVMARRDSNIFKKVAVDYIYAFLRKICRENSVIFNVPHESLLNVGQIFYV*