AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0373950

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0373950 MtrunA17_Chr3g0123861 98.630 438 6 0 1 438 1 438 0.0 889
Msa0373950 MtrunA17_Chr2g0333221 48.744 398 188 5 41 428 34 425 1.50e-129 383
Msa0373950 MtrunA17_Chr6g0478651 44.904 363 189 4 76 428 60 421 7.07e-99 305
Msa0373950 MtrunA17_Chr3g0087741 40.845 355 184 8 82 427 89 426 2.44e-71 231
Msa0373950 MtrunA17_Chr4g0010781 38.736 364 208 6 61 422 71 421 2.10e-70 229
Msa0373950 MtrunA17_Chr5g0426951 34.140 372 211 10 79 434 80 433 4.95e-63 211
Msa0373950 MtrunA17_Chr8g0334811 34.615 338 205 9 83 411 15 345 1.95e-52 181
Msa0373950 MtrunA17_Chr2g0322181 31.909 351 220 9 83 423 14 355 1.59e-38 144
Msa0373950 MtrunA17_Chr4g0025401 33.524 349 215 9 83 423 14 353 1.40e-37 141
Msa0373950 MtrunA17_Chr7g0269841 31.412 347 203 12 83 425 27 342 1.18e-34 132
Msa0373950 MtrunA17_Chr3g0138471 28.863 343 213 11 81 419 3 318 4.11e-30 119
Msa0373950 MtrunA17_Chr2g0282741 61.039 77 24 2 81 153 3 77 3.86e-21 94.0
Msa0373950 MtrunA17_Chr2g0282761 51.961 102 36 4 82 180 4 95 2.28e-20 91.7
Msa0373950 MtrunA17_Chr4g0040501 53.763 93 32 3 81 164 3 93 4.41e-20 91.3
Msa0373950 MtrunA17_Chr7g0242951 54.667 75 32 1 82 156 27 99 1.14e-18 88.6
Msa0373950 MtrunA17_Chr4g0006391 54.054 74 32 1 81 152 3 76 2.19e-18 85.9
Msa0373950 MtrunA17_Chr2g0324921 53.333 75 33 1 81 153 3 77 7.30e-18 84.3
Msa0373950 MtrunA17_Chr7g0253281 57.143 63 27 0 82 144 54 116 2.10e-16 79.7
Msa0373950 MtrunA17_Chr1g0209551 58.571 70 28 1 82 150 16 85 2.12e-15 77.8
Msa0373950 MtrunA17_Chr7g0263971 55.385 65 27 1 82 144 369 433 3.86e-15 77.4
Msa0373950 MtrunA17_Chr2g0295821 37.500 104 60 1 77 175 99 202 6.19e-15 75.9
Msa0373950 MtrunA17_Chr2g0328581 33.516 182 70 7 38 198 11 162 1.55e-14 72.4
Msa0373950 MtrunA17_Chr2g0295831 49.296 71 35 1 74 144 103 172 2.92e-14 72.0
Msa0373950 MtrunA17_Chr3g0091361 51.389 72 33 1 82 151 5 76 3.88e-14 71.2
Msa0373950 MtrunA17_Chr5g0414471 57.576 66 27 1 82 146 25 90 7.73e-14 73.2
Msa0373950 MtrunA17_Chr3g0093111 45.679 81 37 2 82 159 2 78 1.26e-13 71.6
Msa0373950 MtrunA17_Chr7g0271891 48.485 66 29 2 83 143 17 82 2.20e-13 67.8
Msa0373950 MtrunA17_Chr8g0344721 42.391 92 42 2 82 166 10 97 4.19e-13 68.6
Msa0373950 MtrunA17_Chr5g0399201 41.250 80 43 1 82 157 12 91 5.38e-13 70.9
Msa0373950 MtrunA17_Chr6g0460411 42.045 88 38 2 82 163 2 82 7.65e-13 67.8
Msa0373950 MtrunA17_Chr6g0460461 42.045 88 38 2 82 163 2 82 9.78e-13 67.4
Msa0373950 MtrunA17_Chr2g0307061 45.070 71 39 0 77 147 105 175 1.40e-12 68.9
Msa0373950 MtrunA17_Chr1g0159491 40.580 69 40 1 80 147 4 72 1.82e-12 62.8
Msa0373950 MtrunA17_Chr1g0173931 53.030 66 26 2 84 146 40 103 2.04e-12 67.4
Msa0373950 MtrunA17_Chr8g0352451 52.174 69 32 1 83 150 73 141 2.50e-12 68.2
Msa0373950 MtrunA17_Chr5g0393371 45.833 72 38 1 80 150 4 75 3.72e-12 67.8
Msa0373950 MtrunA17_Chr4g0021141 48.485 66 33 1 82 146 22 87 4.32e-12 63.5
Msa0373950 MtrunA17_Chr4g0010801 35.833 120 71 3 213 330 49 164 5.63e-12 64.7
Msa0373950 MtrunA17_Chr1g0206121 48.387 62 32 0 82 143 35 96 1.27e-11 65.5
Msa0373950 MtrunA17_Chr5g0415731 38.889 90 46 2 80 160 3 92 1.70e-11 62.0
Msa0373950 MtrunA17_Chr6g0460381 44.118 68 32 1 82 143 3 70 2.42e-11 62.8
Msa0373950 MtrunA17_Chr6g0476751 40.964 83 48 1 77 158 61 143 2.82e-11 65.9
Msa0373950 MtrunA17_Chr8g0378161 38.889 72 41 1 76 144 54 125 3.25e-11 62.4
Msa0373950 MtrunA17_Chr5g0415751 25.581 129 94 2 292 419 26 153 4.05e-11 61.6
Msa0373950 MtrunA17_Chr1g0178901 31.690 142 86 2 80 221 65 195 5.14e-11 64.7
Msa0373950 MtrunA17_Chr2g0301881 40.741 81 45 2 82 161 99 177 5.51e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0373950 AT2G22360.1 72.210 439 115 5 1 434 1 437 0.0 654
Msa0373950 AT4G39960.1 67.929 449 131 5 1 438 1 447 0.0 619
Msa0373950 AT4G39960.2 67.929 449 131 5 1 438 1 447 0.0 619
Msa0373950 AT1G80030.4 51.743 373 162 7 70 428 62 430 1.43e-125 373
Msa0373950 AT1G80030.2 51.743 373 162 7 70 428 62 430 2.22e-125 373
Msa0373950 AT1G80030.3 51.743 373 162 7 70 428 62 430 2.22e-125 373
Msa0373950 AT1G80030.1 51.743 373 162 7 70 428 62 430 2.22e-125 373
Msa0373950 AT3G17830.1 46.076 395 196 6 42 425 29 417 1.27e-106 325
Msa0373950 AT5G48030.1 39.948 383 208 8 60 432 75 445 3.80e-76 245
Msa0373950 AT1G28210.3 33.994 353 211 6 82 427 48 385 1.08e-57 195
Msa0373950 AT1G28210.1 33.994 353 211 6 82 427 48 385 1.14e-57 195
Msa0373950 AT1G28210.2 33.994 353 211 6 82 427 48 385 2.05e-57 195
Msa0373950 AT5G22060.1 32.676 355 212 10 83 423 15 356 9.82e-43 155
Msa0373950 AT3G44110.1 32.782 363 220 11 83 434 15 364 4.42e-40 149
Msa0373950 AT3G44110.2 32.024 331 203 10 83 402 15 334 5.28e-34 130
Msa0373950 AT3G62600.1 29.577 355 217 11 75 425 19 344 2.13e-30 120
Msa0373950 AT5G01390.1 25.706 354 230 9 81 425 3 332 1.50e-29 118
Msa0373950 AT3G08910.1 27.568 370 190 13 81 425 3 319 2.24e-26 108
Msa0373950 AT3G08970.1 56.250 80 33 1 81 160 26 103 1.69e-20 94.4
Msa0373950 AT3G08970.2 56.250 80 33 1 81 160 26 103 1.69e-20 94.4
Msa0373950 AT5G25530.2 48.039 102 44 3 82 174 4 105 5.48e-20 91.3
Msa0373950 AT4G28480.2 54.054 74 32 1 82 153 4 77 2.76e-18 85.5
Msa0373950 AT4G28480.2 26.897 145 102 3 282 425 147 288 2.60e-11 64.7
Msa0373950 AT2G20560.1 50.000 88 40 2 81 164 3 90 3.36e-18 85.9
Msa0373950 AT2G20560.1 25.185 135 99 2 292 425 202 335 6.12e-12 67.0
Msa0373950 AT4G28480.1 53.333 75 33 1 81 153 3 77 4.96e-18 85.5
Msa0373950 AT5G25530.1 44.545 110 44 4 82 174 4 113 2.09e-17 83.6
Msa0373950 AT1G10350.1 49.333 75 36 1 81 153 3 77 6.58e-17 82.0
Msa0373950 AT1G10350.1 31.538 130 84 4 292 419 213 339 7.46e-11 63.9
Msa0373950 AT5G01390.3 52.778 72 32 1 81 150 3 74 7.73e-17 80.1
Msa0373950 AT5G01390.4 53.521 71 31 1 82 150 4 74 1.06e-16 79.7
Msa0373950 AT5G01390.2 52.778 72 32 1 81 150 3 74 1.46e-16 80.1
Msa0373950 AT3G47940.1 52.703 74 32 1 81 151 3 76 2.48e-16 80.5
Msa0373950 AT3G47940.1 24.865 185 131 5 238 419 160 339 6.18e-12 67.0
Msa0373950 AT1G59725.1 50.000 76 35 1 81 153 3 78 5.07e-16 79.3
Msa0373950 AT1G59725.1 27.692 130 90 3 292 419 194 321 4.51e-11 64.3
Msa0373950 AT1G59980.2 59.375 64 25 1 84 146 25 88 2.46e-15 77.4
Msa0373950 AT5G59610.2 46.753 77 41 0 66 142 57 133 3.29e-15 75.9
Msa0373950 AT1G59980.1 59.375 64 25 1 84 146 25 88 3.80e-15 77.4
Msa0373950 AT5G18140.1 52.381 63 30 0 82 144 77 139 6.49e-15 75.9
Msa0373950 AT1G56300.2 48.529 68 30 2 81 143 12 79 7.16e-15 71.2
Msa0373950 AT5G59610.1 46.753 77 41 0 66 142 57 133 8.21e-15 74.7
Msa0373950 AT5G59610.4 46.753 77 41 0 66 142 57 133 8.21e-15 74.7
Msa0373950 AT5G59610.3 46.753 77 41 0 66 142 57 133 8.32e-15 75.1
Msa0373950 AT5G59610.5 46.753 77 41 0 66 142 57 133 8.32e-15 75.1
Msa0373950 AT1G56300.1 50.000 66 28 2 83 143 14 79 1.59e-14 71.2
Msa0373950 AT2G41000.2 44.086 93 41 3 81 167 2 89 3.41e-14 72.0
Msa0373950 AT3G57340.1 38.095 105 56 2 77 172 108 212 4.38e-14 73.9
Msa0373950 AT3G57340.2 38.095 105 56 2 77 172 108 212 4.38e-14 73.9
Msa0373950 AT5G05750.1 35.185 108 62 1 77 176 109 216 6.14e-14 72.4
Msa0373950 AT5G49060.2 49.315 73 36 1 74 146 92 163 6.22e-14 73.2
Msa0373950 AT5G49060.1 49.315 73 36 1 74 146 92 163 6.22e-14 73.2
Msa0373950 AT2G41000.1 44.565 92 40 3 82 167 3 89 8.20e-14 70.1
Msa0373950 AT1G24120.1 56.061 66 28 1 82 146 20 85 1.13e-13 73.2
Msa0373950 AT1G68370.1 54.286 70 31 1 82 150 17 86 2.04e-13 72.0
Msa0373950 AT4G39150.3 35.833 120 69 3 80 196 4 118 2.89e-13 71.2
Msa0373950 AT4G39150.1 35.833 120 69 3 80 196 4 118 2.89e-13 71.2
Msa0373950 AT4G39150.2 35.833 120 69 3 80 196 4 118 2.89e-13 71.2
Msa0373950 AT5G03160.1 50.769 65 30 1 82 144 370 434 3.02e-13 72.0
Msa0373950 AT4G13830.3 42.683 82 42 2 80 158 64 143 1.94e-12 66.2
Msa0373950 AT2G21510.3 43.836 73 40 1 80 151 4 76 2.14e-12 68.6
Msa0373950 AT2G21510.1 43.836 73 40 1 80 151 4 76 2.14e-12 68.6
Msa0373950 AT4G13830.1 42.683 82 42 2 80 158 64 143 2.28e-12 65.1
Msa0373950 AT2G21510.2 43.836 73 40 1 80 151 4 76 2.34e-12 68.6
Msa0373950 AT2G21510.4 43.836 73 40 1 80 151 4 76 2.34e-12 68.6
Msa0373950 AT2G21510.5 43.836 73 40 1 80 151 4 76 2.36e-12 68.2
Msa0373950 AT5G06910.1 38.043 92 51 2 84 174 31 117 5.45e-12 66.6
Msa0373950 AT4G13830.2 42.683 82 42 2 80 158 64 143 5.55e-12 65.1
Msa0373950 AT1G76700.1 48.611 72 36 1 80 150 4 75 6.30e-12 67.4
Msa0373950 AT5G16650.1 50.000 66 32 1 82 146 11 76 7.94e-12 62.8
Msa0373950 AT2G17880.1 40.909 88 46 3 79 163 65 149 1.16e-11 63.2
Msa0373950 AT2G35720.1 43.836 73 37 1 82 150 15 87 1.32e-11 67.0
Msa0373950 AT1G79940.4 43.210 81 43 2 82 161 99 177 1.65e-11 66.6
Msa0373950 AT5G16650.2 50.794 63 30 1 82 143 11 73 1.65e-11 63.2
Msa0373950 AT1G79940.2 43.210 81 43 2 82 161 99 177 1.93e-11 66.6
Msa0373950 AT1G79940.3 43.210 81 43 2 82 161 99 177 1.93e-11 66.6
Msa0373950 AT1G79940.1 43.210 81 43 2 82 161 99 177 1.93e-11 66.6
Msa0373950 AT1G21080.3 38.542 96 49 2 80 174 4 90 3.15e-11 65.5
Msa0373950 AT4G37480.1 46.154 65 32 1 84 145 58 122 3.38e-11 65.5
Msa0373950 AT1G21080.1 45.833 72 38 1 80 150 4 75 3.55e-11 65.1
Msa0373950 AT5G37380.8 47.059 68 36 0 77 144 61 128 3.91e-11 65.1
Msa0373950 AT5G37380.4 47.059 68 36 0 77 144 61 128 3.91e-11 65.1
Msa0373950 AT5G37380.7 47.059 68 36 0 77 144 61 128 3.91e-11 65.1
Msa0373950 AT5G37380.2 47.059 68 36 0 77 144 61 128 3.91e-11 65.1
Msa0373950 AT5G37380.6 47.059 68 36 0 77 144 61 128 3.91e-11 65.1
Msa0373950 AT5G37380.1 47.059 68 36 0 77 144 61 128 3.91e-11 65.1
Msa0373950 AT5G37380.5 47.059 68 36 0 77 144 61 128 3.91e-11 65.1
Msa0373950 AT5G37380.3 47.059 68 36 0 77 144 61 128 3.91e-11 65.1
Msa0373950 AT5G37380.9 47.059 68 36 0 77 144 61 128 3.91e-11 65.1
Msa0373950 AT4G09350.1 41.772 79 44 1 67 143 91 169 4.81e-11 63.2
Msa0373950 AT1G72070.1 44.262 61 32 1 73 133 30 88 5.42e-11 60.5
Msa0373950 AT2G25560.1 41.758 91 48 1 76 166 60 145 5.56e-11 65.1
Msa0373950 AT4G36040.1 38.053 113 54 4 38 144 29 131 6.02e-11 61.2
Msa0373950 AT1G72070.2 45.000 60 31 1 73 132 30 87 7.37e-11 59.3
Msa0373950 AT3G12170.2 34.188 117 64 4 66 174 24 135 7.85e-11 63.2
Msa0373950 AT3G12170.1 38.043 92 51 3 84 174 13 99 9.83e-11 62.4

Find 166 sgRNAs with CRISPR-Local

Find 390 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAAGAAATTTAATATTAAT+TGG 0.181312 3_1:+73098112 Msa0373950:five_prime_UTR
TGGATTCTGGTAGCCGTTTA+AGG 0.182163 3_1:+73102380 Msa0373950:CDS
ACAGCATTGGATTATATTCT+TGG 0.219663 3_1:+73103016 Msa0373950:three_prime_UTR
TTTGGGGAGGCAGGGCTTAA+AGG 0.247726 3_1:+73101824 Msa0373950:CDS
CGGTCCATATATGACAAATT+TGG 0.261820 3_1:+73101806 Msa0373950:CDS
TCACATCTGGATGATAATTT+CGG 0.265510 3_1:-73101284 None:intergenic
TACAAGCAGGATAAGCTTTA+TGG 0.275354 3_1:+73099684 Msa0373950:CDS
GGTCCATATATGACAAATTT+GGG 0.277603 3_1:+73101807 Msa0373950:CDS
CTCCCCAAATTTGTCATATA+TGG 0.277754 3_1:-73101810 None:intergenic
AATCTTGGGGACTACAATTA+AGG 0.292885 3_1:+73102543 Msa0373950:CDS
AATGAAGCATCCATAATAAA+AGG 0.301948 3_1:-73102845 None:intergenic
CTTAAAGGTTCACCGGGATT+TGG 0.302482 3_1:+73101839 Msa0373950:CDS
GTCTTATATTGATGCAATCT+TGG 0.313538 3_1:+73102528 Msa0373950:CDS
ACCCCTTGCAGTACATGTTC+TGG 0.319612 3_1:+73102304 Msa0373950:CDS
GTTCCAGCCGGTGTGGATTC+TGG 0.326305 3_1:+73102367 Msa0373950:CDS
TTGTAAATGTTTCAGCTTAC+CGG 0.333265 3_1:+73101253 Msa0373950:intron
TCTCGTTTAAGCACGGGATC+CGG 0.337729 3_1:-73102475 None:intergenic
CACATCTGGATGATAATTTC+GGG 0.342735 3_1:-73101283 None:intergenic
TGGTGCAGAAGAGAAATTTA+AGG 0.344525 3_1:+73101658 Msa0373950:CDS
TCTTATATTGATGCAATCTT+GGG 0.353264 3_1:+73102529 Msa0373950:CDS
CAAATCCGCCTATGTCTATA+AGG 0.354679 3_1:-73102897 None:intergenic
TAGATGGCAGTTACACCTTT+TGG 0.356074 3_1:+73098163 Msa0373950:exon
TTCCAGAGTTACCTTCATTT+CGG 0.363610 3_1:-73102405 None:intergenic
CTTCATTTCGGACCCTTAAA+CGG 0.373498 3_1:-73102393 None:intergenic
ATTAAGGTTCCGACTGTAGA+TGG 0.378346 3_1:+73102559 Msa0373950:CDS
GGATTCTGGTAGCCGTTTAA+GGG 0.391936 3_1:+73102381 Msa0373950:CDS
CTTGGCTATTGTGGTGGATC+TGG 0.391953 3_1:-73098230 None:intergenic
TGTGGTACTTGCGATGGTTC+AGG 0.397485 3_1:+73102142 Msa0373950:CDS
TTCATGACCTTGGTATATAT+AGG 0.399180 3_1:+73102866 Msa0373950:three_prime_UTR
ATGTAACACATGTGGTGGTC+AGG 0.403113 3_1:+73102192 Msa0373950:CDS
GGAAGGAGAGGATGAGGAAG+TGG 0.403515 3_1:-73097640 None:intergenic
AGCGACTCAAACAGATCAAA+AGG 0.403699 3_1:-73101977 None:intergenic
GATAATTTCGGGCTAGCTTC+CGG 0.405239 3_1:-73101272 None:intergenic
AATACTCACTTGTTCACATC+TGG 0.408035 3_1:-73101297 None:intergenic
GAAGTTGGAAGGAGAGGATG+AGG 0.414984 3_1:-73097646 None:intergenic
CTCGTTTAAGCACGGGATCC+GGG 0.419118 3_1:-73102474 None:intergenic
TTGAGACTATATATTATAGA+TGG 0.419454 3_1:+73098147 Msa0373950:exon
CAGGACTACTACACCGTCCT+TGG 0.424406 3_1:+73099972 Msa0373950:intron
ACCAGGATCAACACTTGTTA+TGG 0.426673 3_1:+73102615 Msa0373950:CDS
CAGTACATCAGCTACTCAAT+GGG 0.440441 3_1:+73098186 Msa0373950:CDS
GTGGATTTGAAAATCCCATC+TGG 0.440632 3_1:+73102586 Msa0373950:CDS
ATTTCTTGATGAAATTCCTC+TGG 0.441460 3_1:-73098098 None:intergenic
CCCCTTGCAGTACATGTTCT+GGG 0.441535 3_1:+73102305 Msa0373950:CDS
TATGACAAATTTGGGGAGGC+AGG 0.442220 3_1:+73101815 Msa0373950:CDS
GTACATGTTCTGGGGATGGC+CGG 0.445163 3_1:+73102314 Msa0373950:CDS
AGAGGGAATGAAAGGGAACT+TGG 0.445557 3_1:-73097572 None:intergenic
CATCTGGATGATTTAGTCCC+TGG 0.446833 3_1:-73102172 None:intergenic
ACTTTATGCTGCAGAGATCC+TGG 0.448540 3_1:+73101638 Msa0373950:intron
TGCTGAATAAGAAGAATATG+AGG 0.451840 3_1:+73102656 Msa0373950:CDS
CTGTTTGAGTCGCTATTTGA+GGG 0.452801 3_1:+73101986 Msa0373950:CDS
AGGACTACTACACCGTCCTT+GGG 0.453339 3_1:+73099973 Msa0373950:intron
GGAAAGAAAGGTGGTTCTCC+TGG 0.465052 3_1:+73102424 Msa0373950:CDS
TTAAATTTCTCTTCTGCACC+AGG 0.476100 3_1:-73101656 None:intergenic
ACCACCACATGTGTTACATC+TGG 0.476919 3_1:-73102188 None:intergenic
TGCTCGTCTTGCAATGGGAC+TGG 0.478835 3_1:+73102271 Msa0373950:CDS
TGACTTGCTCGTCTTGCAAT+GGG 0.482426 3_1:+73102266 Msa0373950:CDS
GATGATATTTCGTGGGAAGT+TGG 0.483750 3_1:+73102794 Msa0373950:exon
ACTGCTTGGGAGAGAGAAGT+TGG 0.485585 3_1:-73097661 None:intergenic
GCTTATAGAGAGGGAATGAA+AGG 0.488156 3_1:-73097580 None:intergenic
CGTTTAAGGGTCCGAAATGA+AGG 0.488601 3_1:+73102394 Msa0373950:CDS
TCTGTTTGAGTCGCTATTTG+AGG 0.489195 3_1:+73101985 Msa0373950:CDS
ATGACTTGCTCGTCTTGCAA+TGG 0.491631 3_1:+73102265 Msa0373950:CDS
GCAGTACATCAGCTACTCAA+TGG 0.492349 3_1:+73098185 Msa0373950:CDS
ATGGTCGCAGCAGACAATCT+TGG 0.494344 3_1:+73102014 Msa0373950:CDS
TGCATCGTCGAAGGGGATCA+AGG 0.494975 3_1:+73099773 Msa0373950:CDS
CTACCAGAATCCACACCGGC+TGG 0.495088 3_1:-73102370 None:intergenic
GAAGGTAACTCTGGAAAGAA+AGG 0.495407 3_1:+73102412 Msa0373950:CDS
AAAGGTTCACCGGGATTTGG+TGG 0.502293 3_1:+73101842 Msa0373950:CDS
GTTCTGGGGATGGCCGGGTG+AGG 0.503033 3_1:+73102320 Msa0373950:CDS
GGATGCTTCATTCATGACCT+TGG 0.503641 3_1:+73102856 Msa0373950:three_prime_UTR
TGTTGTTCTTGAAGTTATCC+CGG 0.507023 3_1:+73102456 Msa0373950:CDS
CAGTCAATGTTATTCGTGAA+GGG 0.509237 3_1:+73103048 Msa0373950:three_prime_UTR
TGGAAAAGGAGATAGAGATT+AGG 0.510570 3_1:+73102107 Msa0373950:CDS
GGTGTCTTCTCGTTTAAGCA+CGG 0.510856 3_1:-73102482 None:intergenic
TATAGGCGCTGCTACTGCTT+GGG 0.511874 3_1:-73097674 None:intergenic
TTATAGGCGCTGCTACTGCT+TGG 0.512265 3_1:-73097675 None:intergenic
TACATGTTCTGGGGATGGCC+GGG 0.512446 3_1:+73102315 Msa0373950:CDS
AAGGTTCACCGGGATTTGGT+GGG 0.517220 3_1:+73101843 Msa0373950:CDS
TCTTGGAATGGAGCAATGAA+TGG 0.519565 3_1:+73102031 Msa0373950:CDS
GTGTCTTCTCGTTTAAGCAC+GGG 0.522378 3_1:-73102481 None:intergenic
GATCCTGGTTGTGTCCCAGA+TGG 0.522621 3_1:-73102601 None:intergenic
ACTAAATCTGAAATTAAGAC+TGG 0.522708 3_1:+73100011 Msa0373950:CDS
TTTCTTGCAGTGCTACAAGC+AGG 0.523918 3_1:+73099671 Msa0373950:intron
TGCAGTACATGTTCTGGGGA+TGG 0.526866 3_1:+73102310 Msa0373950:CDS
GTGTCTTGATGATGCAAACT+TGG 0.526872 3_1:-73098248 None:intergenic
CACATGTGGTGGTCAGGGAC+GGG 0.527198 3_1:+73102198 Msa0373950:CDS
GCCATAACAAGTGTTGATCC+TGG 0.527492 3_1:-73102616 None:intergenic
GGTTCACCGGGATTTGGTGG+GGG 0.527719 3_1:+73101845 Msa0373950:CDS
AAAACTGATTGAGGAACTCT+CGG 0.528888 3_1:+73102738 Msa0373950:CDS
TGAGTCGCTATTTGAGGGCA+TGG 0.529744 3_1:+73101991 Msa0373950:CDS
GAGAGAGAAGTTGGAAGGAG+AGG 0.531344 3_1:-73097652 None:intergenic
ATCCTGGTTGTGTCCCAGAT+GGG 0.532879 3_1:-73102600 None:intergenic
TTGTTACTCCTTATAGACAT+AGG 0.535142 3_1:+73102889 Msa0373950:three_prime_UTR
TCAGTCAATGTTATTCGTGA+AGG 0.536072 3_1:+73103047 Msa0373950:three_prime_UTR
ACATAGGCGGATTTGAAGAA+AGG 0.536912 3_1:+73102905 Msa0373950:three_prime_UTR
ATCCCATCTGGGACACAACC+AGG 0.538117 3_1:+73102598 Msa0373950:CDS
TGATGCAAACTTGGCTATTG+TGG 0.538121 3_1:-73098239 None:intergenic
CACTCAAACAAGGACTCCGT+TGG 0.539049 3_1:+73102225 Msa0373950:CDS
ACACTTGTTATGGCAAAGAA+AGG 0.539668 3_1:+73102625 Msa0373950:CDS
TCGCTATTTGAGGGCATGGA+TGG 0.540022 3_1:+73101995 Msa0373950:CDS
ATGACAAATTTGGGGAGGCA+GGG 0.541510 3_1:+73101816 Msa0373950:CDS
ATCAAACTTTGCATCGTCGA+AGG 0.545133 3_1:+73099764 Msa0373950:CDS
ACTCAAACAAGGACTCCGTT+GGG 0.546387 3_1:+73102226 Msa0373950:CDS
CGCAGCAGACAATCTTGGAA+TGG 0.550184 3_1:+73102019 Msa0373950:CDS
TTTACAAGAATATAAAATGT+TGG 0.551313 3_1:-73102503 None:intergenic
CGGATTTGAAGAAAGGACAT+AGG 0.552842 3_1:+73102912 Msa0373950:three_prime_UTR
CGATGAGAGAAAACTGATTG+AGG 0.553553 3_1:+73102729 Msa0373950:CDS
CTTATAGAGAGGGAATGAAA+GGG 0.554331 3_1:-73097579 None:intergenic
GTCCGAAATGAAGGTAACTC+TGG 0.554384 3_1:+73102403 Msa0373950:CDS
TCAAACTTTGCATCGTCGAA+GGG 0.557101 3_1:+73099765 Msa0373950:CDS
AGGTTCACCGGGATTTGGTG+GGG 0.558467 3_1:+73101844 Msa0373950:CDS
ACACATGTGGTGGTCAGGGA+CGG 0.560533 3_1:+73102197 Msa0373950:CDS
CCCCAGAACATGTACTGCAA+GGG 0.565096 3_1:-73102306 None:intergenic
GGCAGGGCTTAAAGGTTCAC+CGG 0.569076 3_1:+73101832 Msa0373950:CDS
CGGTATGAGATGATATTTCG+TGG 0.569871 3_1:+73102786 Msa0373950:exon
ATATTCTTCTTATTCAGCAG+AGG 0.569920 3_1:-73102652 None:intergenic
GCTGAATAAGAAGAATATGA+GGG 0.578910 3_1:+73102657 Msa0373950:CDS
AGCAAAGGCAAGACTGCCGC+CGG 0.579260 3_1:+73102766 Msa0373950:CDS
GCGACTCAAACAGATCAAAA+GGG 0.581128 3_1:-73101976 None:intergenic
TGTAACACATGTGGTGGTCA+GGG 0.583052 3_1:+73102193 Msa0373950:CDS
TGAACCTATATTAAAACGCA+AGG 0.584026 3_1:-73099740 None:intergenic
AGTCAATGTTATTCGTGAAG+GGG 0.584331 3_1:+73103049 Msa0373950:three_prime_UTR
TCTTGTCAGATGATGAGAAA+CGG 0.584943 3_1:+73101786 Msa0373950:CDS
TCCCCAGAACATGTACTGCA+AGG 0.589752 3_1:-73102307 None:intergenic
GTAGCTGATGTACTGCCAAA+AGG 0.593984 3_1:-73098178 None:intergenic
CTTGGGAGAGAGAAGTTGGA+AGG 0.596682 3_1:-73097657 None:intergenic
AACAAAGCGGATAAGTCTCA+AGG 0.598548 3_1:+73102345 Msa0373950:CDS
GCAGGGCTTAAAGGTTCACC+GGG 0.602555 3_1:+73101833 Msa0373950:CDS
GGTTCCGACTGTAGATGGAA+TGG 0.604592 3_1:+73102564 Msa0373950:CDS
CACGAAATATCATCTCATAC+CGG 0.605585 3_1:-73102785 None:intergenic
GATGGTTCAGGAGCTAAACC+AGG 0.608802 3_1:+73102154 Msa0373950:CDS
GGGAATGAAAGGGAACTTGG+TGG 0.610006 3_1:-73097569 None:intergenic
AGAACAACAAAGAGGTCACC+AGG 0.612651 3_1:-73102442 None:intergenic
TGGATTTGAAAATCCCATCT+GGG 0.615278 3_1:+73102587 Msa0373950:CDS
CCCAGAACATGTACTGCAAG+GGG 0.617559 3_1:-73102305 None:intergenic
TCTCAAGGTTCCAGCCGGTG+TGG 0.618146 3_1:+73102360 Msa0373950:CDS
ATAAGTCTCAAGGTTCCAGC+CGG 0.620771 3_1:+73102355 Msa0373950:CDS
CTTATATTGATGCAATCTTG+GGG 0.623095 3_1:+73102530 Msa0373950:CDS
GACGGGTTGTCACTCAAACA+AGG 0.625091 3_1:+73102215 Msa0373950:CDS
TGCAAACTTGGCTATTGTGG+TGG 0.627230 3_1:-73098236 None:intergenic
GGTAACTCTGGAAAGAAAGG+TGG 0.630205 3_1:+73102415 Msa0373950:CDS
TTACTCCTTATAGACATAGG+CGG 0.632114 3_1:+73102892 Msa0373950:three_prime_UTR
GAACTCTCGGAGTTGAGCAA+AGG 0.632985 3_1:+73102751 Msa0373950:CDS
GAGAAGTGTGGTACTTGCGA+TGG 0.635595 3_1:+73102136 Msa0373950:CDS
TCCAGATGTAACACATGTGG+TGG 0.637762 3_1:+73102187 Msa0373950:CDS
TCCACCATTCCATCTACAGT+CGG 0.638944 3_1:-73102568 None:intergenic
GGAAATCAGTAATGCGTACG+AGG 0.643998 3_1:+73101679 Msa0373950:CDS
GGACTACTACACCGTCCTTG+GGG 0.645334 3_1:+73099974 Msa0373950:intron
CCCTTGCAGTACATGTTCTG+GGG 0.646072 3_1:+73102306 Msa0373950:CDS
TAACTTCAAGAACAACAAAG+AGG 0.649565 3_1:-73102450 None:intergenic
GACTGCTGAAAGATACCCAA+CGG 0.649757 3_1:-73102241 None:intergenic
CAAACTTTGCATCGTCGAAG+GGG 0.657260 3_1:+73099766 Msa0373950:CDS
CATATATGACAAATTTGGGG+AGG 0.659382 3_1:+73101811 Msa0373950:CDS
GGTATGAGATGATATTTCGT+GGG 0.660372 3_1:+73102787 Msa0373950:exon
TCCGACTGTAGATGGAATGG+TGG 0.660929 3_1:+73102567 Msa0373950:CDS
GTCCATATATGACAAATTTG+GGG 0.662707 3_1:+73101808 Msa0373950:CDS
CTGAATAAGAAGAATATGAG+GGG 0.668517 3_1:+73102658 Msa0373950:CDS
TCATCCAGATGTAACACATG+TGG 0.669998 3_1:+73102184 Msa0373950:CDS
GTGGATCTGGCAACAATCTG+AGG 0.677214 3_1:-73098217 None:intergenic
GTAACAACCTATATATACCA+AGG 0.685901 3_1:-73102873 None:intergenic
ATTAGGCGACTAGAGAAGTG+TGG 0.694061 3_1:+73102124 Msa0373950:CDS
ATGGTTCAGGAGCTAAACCA+GGG 0.708190 3_1:+73102155 Msa0373950:CDS
GCCGGGTGAGGAAAACAAAG+CGG 0.718931 3_1:+73102332 Msa0373950:CDS
AGTACATCAGCTACTCAATG+GGG 0.725170 3_1:+73098187 Msa0373950:CDS
GAAATATCATCTCATACCGG+CGG 0.725473 3_1:-73102782 None:intergenic
ACGGCTACCAGAATCCACAC+CGG 0.739891 3_1:-73102374 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCAAGAAATTTAATATTAAT+TGG + chr3_1:73098112-73098131 Msa0373950:five_prime_UTR 10.0%
!!! ATTTTATTTTCCTTTTATTA+TGG + chr3_1:73102835-73102854 Msa0373950:three_prime_UTR 10.0%
!!! TTATTTATTTTCAATAACCA+AGG + chr3_1:73097885-73097904 Msa0373950:intron 15.0%
!! TATATTTCATATTCATCAAA+TGG - chr3_1:73099051-73099070 None:intergenic 15.0%
!! TTAAATGTAAAAAATCCTAA+AGG + chr3_1:73099187-73099206 Msa0373950:intron 15.0%
!!! ATTTTCATTCTTCTAAAATA+CGG + chr3_1:73099250-73099269 Msa0373950:intron 15.0%
!!! TCTGTTTTTTTTTTTAACTT+AGG + chr3_1:73099330-73099349 Msa0373950:intron 15.0%
!! CAAGAGATATATAATATAAA+AGG - chr3_1:73100155-73100174 None:intergenic 15.0%
!! TATTAAATGAGATAATCATT+CGG - chr3_1:73100670-73100689 None:intergenic 15.0%
!!! AATTTTGAAAGTTTCAAATT+TGG - chr3_1:73100921-73100940 None:intergenic 15.0%
!!! TTTCATTTCACTTTTTTTTT+TGG + chr3_1:73101078-73101097 Msa0373950:intron 15.0%
!! TTTACAAGAATATAAAATGT+TGG - chr3_1:73102506-73102525 None:intergenic 15.0%
!!! TTACATTTTAGTTATATTCT+TGG + chr3_1:73102980-73102999 Msa0373950:three_prime_UTR 15.0%
!! AGATGTTTGAATATTTGAAT+TGG - chr3_1:73097757-73097776 None:intergenic 20.0%
!! TTGAGACTATATATTATAGA+TGG + chr3_1:73098147-73098166 Msa0373950:exon 20.0%
!!! ATTTTGTTTCTCTTGTATAT+TGG + chr3_1:73098301-73098320 Msa0373950:intron 20.0%
!!! TTTTATACCGAACTTTTTTA+TGG - chr3_1:73098383-73098402 None:intergenic 20.0%
!! AGTAAATGTGAATAATTAAG+CGG - chr3_1:73098773-73098792 None:intergenic 20.0%
!!! TTTTTCTCAATCAATTCTTT+AGG + chr3_1:73098935-73098954 Msa0373950:intron 20.0%
!!! TTTTCTCAATCAATTCTTTA+GGG + chr3_1:73098936-73098955 Msa0373950:intron 20.0%
!! ATGAATTTGAAGAATCAAAT+AGG + chr3_1:73099156-73099175 Msa0373950:intron 20.0%
!!! GGATTTTTTACATTTAACAA+TGG - chr3_1:73099184-73099203 None:intergenic 20.0%
!!! TTTTAGAAGAATGAAAATAG+AGG - chr3_1:73099248-73099267 None:intergenic 20.0%
!! TACTAATAAAATGTTTGTGA+AGG + chr3_1:73100209-73100228 Msa0373950:intron 20.0%
!!! TTAATTCTTGTTCTATGTTT+TGG - chr3_1:73100289-73100308 None:intergenic 20.0%
!!! ATTTTGTTTAATGCCAAAAA+AGG + chr3_1:73100872-73100891 Msa0373950:intron 20.0%
!!! TAAATGTTTAGTTTGAACTT+CGG - chr3_1:73101058-73101077 None:intergenic 20.0%
!! AATTATGCAACTAGAAATTA+TGG - chr3_1:73101555-73101574 None:intergenic 20.0%
!!! TTGCATAATTTTTTTTCACA+TGG + chr3_1:73101565-73101584 Msa0373950:intron 20.0%
!! TAAAGTGAATACACATATAT+AGG - chr3_1:73101624-73101643 None:intergenic 20.0%
!! TTAAAATTCTCCATAATCTT+TGG - chr3_1:73101897-73101916 None:intergenic 20.0%
!! TGTAAAATCTTTGTGATTAT+AGG + chr3_1:73101943-73101962 Msa0373950:intron 20.0%
! ATCCAATCTATCAATAATGA+AGG - chr3_1:73097824-73097843 None:intergenic 25.0%
!!! AACTTTTTTATGGCTATAAC+CGG - chr3_1:73098373-73098392 None:intergenic 25.0%
! GTTATAGCCATAAAAAAGTT+CGG + chr3_1:73098373-73098392 Msa0373950:intron 25.0%
! ATTATCAGAAACTAAGATGT+CGG + chr3_1:73098463-73098482 Msa0373950:intron 25.0%
!! TGATTTTATTGAAGTTCCAA+AGG - chr3_1:73098658-73098677 None:intergenic 25.0%
! TAAATGTGAATAATTAAGCG+GGG - chr3_1:73098771-73098790 None:intergenic 25.0%
! GTAAATGTGAATAATTAAGC+GGG - chr3_1:73098772-73098791 None:intergenic 25.0%
! TCAAATTCATTGATGAGAAT+TGG - chr3_1:73099146-73099165 None:intergenic 25.0%
!!! AGAGGCATTGAATATTAAAT+AGG - chr3_1:73099230-73099249 None:intergenic 25.0%
!! TAATGCAGTGATTTAAAATG+AGG - chr3_1:73099406-73099425 None:intergenic 25.0%
! TAGATATTCAGCCAATATAT+TGG - chr3_1:73099937-73099956 None:intergenic 25.0%
!! ACTAAATCTGAAATTAAGAC+TGG + chr3_1:73100011-73100030 Msa0373950:CDS 25.0%
! TCCTAAATTCTTCTGTATTT+AGG + chr3_1:73100483-73100502 Msa0373950:intron 25.0%
! ACCTAAATACAGAAGAATTT+AGG - chr3_1:73100487-73100506 None:intergenic 25.0%
! TGAAAGTTTCAAATTTGGTT+TGG - chr3_1:73100916-73100935 None:intergenic 25.0%
!!! ATTCTAGTTTTGGTTTATGT+TGG - chr3_1:73100994-73101013 None:intergenic 25.0%
!!! TTTTTTTTGGTAATCAATGC+AGG + chr3_1:73101091-73101110 Msa0373950:intron 25.0%
! TATCAGAAACATCAATTACT+CGG + chr3_1:73101140-73101159 Msa0373950:intron 25.0%
! TAGAAAAGGAAAAAAAGAGT+GGG - chr3_1:73101383-73101402 None:intergenic 25.0%
! TATGAACTAACCATGAATTA+GGG - chr3_1:73101734-73101753 None:intergenic 25.0%
! TTATGAACTAACCATGAATT+AGG - chr3_1:73101735-73101754 None:intergenic 25.0%
!! ATGTAACTATAATCCTTTTC+AGG + chr3_1:73101763-73101782 Msa0373950:intron 25.0%
!!! AACTTTAAAGAAGCTGTTTT+CGG + chr3_1:73102082-73102101 Msa0373950:CDS 25.0%
!! AATGAAGCATCCATAATAAA+AGG - chr3_1:73102848-73102867 None:intergenic 25.0%
! TCTTCTTTTACCCTTTAGTT+TGG - chr3_1:73097539-73097558 None:intergenic 30.0%
!! GATTGTTTTGCTTATAGAGA+GGG - chr3_1:73097592-73097611 None:intergenic 30.0%
!! AGATTGTTTTGCTTATAGAG+AGG - chr3_1:73097593-73097612 None:intergenic 30.0%
! TTGTTGTTGTTGTTGTTGTT+GGG - chr3_1:73097711-73097730 None:intergenic 30.0%
CTCCTTCATTATTGATAGAT+TGG + chr3_1:73097819-73097838 Msa0373950:intron 30.0%
TGAATTAAGATAAGAAGCCT+TGG - chr3_1:73097905-73097924 None:intergenic 30.0%
GTAATTCATTACTCATGACT+AGG + chr3_1:73097999-73098018 Msa0373950:intron 30.0%
!! CACAAAAAAGCACTTATTTC+CGG - chr3_1:73098044-73098063 None:intergenic 30.0%
ATTTCTTGATGAAATTCCTC+TGG - chr3_1:73098101-73098120 None:intergenic 30.0%
TTTATCTGTCATATTGTCAC+CGG + chr3_1:73098351-73098370 Msa0373950:intron 30.0%
TTTAACCAAAACAGGCAATA+AGG - chr3_1:73098494-73098513 None:intergenic 30.0%
TTATTGAAGTTCCAAAGGTT+GGG - chr3_1:73098653-73098672 None:intergenic 30.0%
TTTATTGAAGTTCCAAAGGT+TGG - chr3_1:73098654-73098673 None:intergenic 30.0%
ACACAAGAATCAATTCTACT+TGG - chr3_1:73098744-73098763 None:intergenic 30.0%
!! AGATTTTAGAAGAGACGATT+TGG - chr3_1:73098827-73098846 None:intergenic 30.0%
GATTCAATTAGTCAATTGTC+TGG + chr3_1:73098911-73098930 Msa0373950:intron 30.0%
! ACAAATTGGTAGCACTATTT+AGG + chr3_1:73099009-73099028 Msa0373950:intron 30.0%
!! TTCATTCTTCTAAAATACGG+AGG + chr3_1:73099253-73099272 Msa0373950:intron 30.0%
!! TCATTCTTCTAAAATACGGA+GGG + chr3_1:73099254-73099273 Msa0373950:intron 30.0%
ATTGTGATTAAATTGCGTTG+TGG + chr3_1:73099377-73099396 Msa0373950:intron 30.0%
TTGTGATTAAATTGCGTTGT+GGG + chr3_1:73099378-73099397 Msa0373950:intron 30.0%
AAAACTGTTCCTAATGAGTA+AGG - chr3_1:73099605-73099624 None:intergenic 30.0%
!! GATTCCTTGCGTTTTAATAT+AGG + chr3_1:73099736-73099755 Msa0373950:CDS 30.0%
TGAACCTATATTAAAACGCA+AGG - chr3_1:73099743-73099762 None:intergenic 30.0%
TCAAGAAGAATACTTTCACA+AGG - chr3_1:73099890-73099909 None:intergenic 30.0%
!! GAAAGTATTCTTCTTGAAGT+TGG + chr3_1:73099893-73099912 Msa0373950:intron 30.0%
ACTATGACCATCCAATATAT+TGG + chr3_1:73099923-73099942 Msa0373950:intron 30.0%
TATTCAGCCAATATATTGGA+TGG - chr3_1:73099933-73099952 None:intergenic 30.0%
AAATCATAACAGTCAGAGAA+GGG - chr3_1:73100051-73100070 None:intergenic 30.0%
! ATCACAGCTTTGATAACAAA+TGG - chr3_1:73100377-73100396 None:intergenic 30.0%
TCCTAATCATTCGTAGTTAA+CGG - chr3_1:73100440-73100459 None:intergenic 30.0%
TTGCTTTACAACATACAACA+AGG - chr3_1:73100582-73100601 None:intergenic 30.0%
ATGAGATAATCATTCGGATT+TGG - chr3_1:73100664-73100683 None:intergenic 30.0%
CTTAATACCAATACTGAAGA+AGG + chr3_1:73100712-73100731 Msa0373950:intron 30.0%
TTCAGATAAAATGTCTGTGA+AGG + chr3_1:73100735-73100754 Msa0373950:intron 30.0%
ACAAAATAAACAGCCGTTTA+GGG - chr3_1:73100859-73100878 None:intergenic 30.0%
AACAAAATAAACAGCCGTTT+AGG - chr3_1:73100860-73100879 None:intergenic 30.0%
TTTAATGCCAAAAAAGGACA+TGG + chr3_1:73100878-73100897 Msa0373950:intron 30.0%
TTAATGCCAAAAAAGGACAT+GGG + chr3_1:73100879-73100898 Msa0373950:intron 30.0%
ATCAGAAACATCAATTACTC+GGG + chr3_1:73101141-73101160 Msa0373950:intron 30.0%
TAACAATGCAATGATACCAT+GGG - chr3_1:73101223-73101242 None:intergenic 30.0%
TTAACAATGCAATGATACCA+TGG - chr3_1:73101224-73101243 None:intergenic 30.0%
TTGTAAATGTTTCAGCTTAC+CGG + chr3_1:73101253-73101272 Msa0373950:intron 30.0%
TCACATCTGGATGATAATTT+CGG - chr3_1:73101287-73101306 None:intergenic 30.0%
AGAAAGCAGATAACTTCAAT+GGG - chr3_1:73101338-73101357 None:intergenic 30.0%
TAGAAAGCAGATAACTTCAA+TGG - chr3_1:73101339-73101358 None:intergenic 30.0%
CTAGAAAAGGAAAAAAAGAG+TGG - chr3_1:73101384-73101403 None:intergenic 30.0%
GCAATAGTGAAATCTAGAAA+AGG - chr3_1:73101397-73101416 None:intergenic 30.0%
TCTAGATTTCACTATTGCTA+TGG + chr3_1:73101399-73101418 Msa0373950:intron 30.0%
GGTCCATATATGACAAATTT+GGG + chr3_1:73101807-73101826 Msa0373950:CDS 30.0%
GTCCATATATGACAAATTTG+GGG + chr3_1:73101808-73101827 Msa0373950:CDS 30.0%
AAATTCTCCATAATCTTTGG+AGG - chr3_1:73101894-73101913 None:intergenic 30.0%
TAACTTCAAGAACAACAAAG+AGG - chr3_1:73102453-73102472 None:intergenic 30.0%
ATATTCTTCTTATTCAGCAG+AGG - chr3_1:73102655-73102674 None:intergenic 30.0%
TGCTGAATAAGAAGAATATG+AGG + chr3_1:73102656-73102675 Msa0373950:CDS 30.0%
GCTGAATAAGAAGAATATGA+GGG + chr3_1:73102657-73102676 Msa0373950:CDS 30.0%
CTGAATAAGAAGAATATGAG+GGG + chr3_1:73102658-73102677 Msa0373950:CDS 30.0%
TTCATGACCTTGGTATATAT+AGG + chr3_1:73102866-73102885 Msa0373950:three_prime_UTR 30.0%
GTAACAACCTATATATACCA+AGG - chr3_1:73102876-73102895 None:intergenic 30.0%
TTGTTACTCCTTATAGACAT+AGG + chr3_1:73102889-73102908 Msa0373950:three_prime_UTR 30.0%
!! TCATCTATTGCTTGTTTTCT+TGG + chr3_1:73102954-73102973 Msa0373950:three_prime_UTR 30.0%
!!! ATGTTGTTTTTTGACAGCAT+TGG + chr3_1:73103003-73103022 Msa0373950:three_prime_UTR 30.0%
! ACAGCATTGGATTATATTCT+TGG + chr3_1:73103016-73103035 Msa0373950:three_prime_UTR 30.0%
CTTATAGAGAGGGAATGAAA+GGG - chr3_1:73097582-73097601 None:intergenic 35.0%
! TGTTGTTGTTGTTGTTGTTG+GGG - chr3_1:73097710-73097729 None:intergenic 35.0%
! GTTGTTGTTGTTGTTGTTGT+TGG - chr3_1:73097712-73097731 None:intergenic 35.0%
AACAACAACAACAACAACAC+AGG + chr3_1:73097717-73097736 Msa0373950:five_prime_UTR 35.0%
!! TTCATTTTTACCTTCTGCTC+CGG + chr3_1:73098022-73098041 Msa0373950:intron 35.0%
!!! CTTAATTTTTTTGCAGCCAG+AGG + chr3_1:73098082-73098101 Msa0373950:intron 35.0%
TACCGGAGTTGAGAAAAAAT+GGG + chr3_1:73098525-73098544 Msa0373950:intron 35.0%
! TTGTAATTTTGCCCAACCTT+TGG + chr3_1:73098639-73098658 Msa0373950:intron 35.0%
CTGAAAAATTCCACTTCTCT+TGG - chr3_1:73098712-73098731 None:intergenic 35.0%
!! TTAGAAGAGACGATTTGGTT+TGG - chr3_1:73098822-73098841 None:intergenic 35.0%
TAAAATCTGTATCAATCGCC+TGG + chr3_1:73098839-73098858 Msa0373950:intron 35.0%
ATCCATGAAATCGCACAAAT+TGG + chr3_1:73098995-73099014 Msa0373950:intron 35.0%
TACCAATTTGTGCGATTTCA+TGG - chr3_1:73099000-73099019 None:intergenic 35.0%
CAACTCACTATTCAGATGTT+AGG + chr3_1:73099504-73099523 Msa0373950:intron 35.0%
AGCACTGCAAGAAAAATGAT+TGG - chr3_1:73099665-73099684 None:intergenic 35.0%
TACAAGCAGGATAAGCTTTA+TGG + chr3_1:73099684-73099703 Msa0373950:CDS 35.0%
!!! TAGAATTTTTTGACACCCCA+AGG - chr3_1:73099992-73100011 None:intergenic 35.0%
CAAATCATAACAGTCAGAGA+AGG - chr3_1:73100052-73100071 None:intergenic 35.0%
TCCGTTAACTACGAATGATT+AGG + chr3_1:73100436-73100455 Msa0373950:intron 35.0%
AACTACGAATGATTAGGATC+AGG + chr3_1:73100442-73100461 Msa0373950:intron 35.0%
ACTACGAATGATTAGGATCA+GGG + chr3_1:73100443-73100462 Msa0373950:intron 35.0%
! TGTAATCTTTTGCCTAGATG+CGG + chr3_1:73100608-73100627 Msa0373950:intron 35.0%
ATGCAAAGATTTGTAACTGC+AGG + chr3_1:73100634-73100653 Msa0373950:intron 35.0%
TGCAAAGATTTGTAACTGCA+GGG + chr3_1:73100635-73100654 Msa0373950:intron 35.0%
ATCTGAACCTTCTTCAGTAT+TGG - chr3_1:73100722-73100741 None:intergenic 35.0%
TAGCAACAAGCATTATCAAG+TGG - chr3_1:73100812-73100831 None:intergenic 35.0%
CAAAATAAACAGCCGTTTAG+GGG - chr3_1:73100858-73100877 None:intergenic 35.0%
TAATGCCAAAAAAGGACATG+GGG + chr3_1:73100880-73100899 Msa0373950:intron 35.0%
TAATCGTCTTGATTGCTCTT+TGG + chr3_1:73100940-73100959 Msa0373950:intron 35.0%
!!! ACGTACAAGGATTCTAGTTT+TGG - chr3_1:73101004-73101023 None:intergenic 35.0%
AAAACTAGAATCCTTGTACG+TGG + chr3_1:73101003-73101022 Msa0373950:intron 35.0%
! TTTGGTAATCAATGCAGGAA+AGG + chr3_1:73101096-73101115 Msa0373950:intron 35.0%
TAATCAATGCAGGAAAGGTT+TGG + chr3_1:73101101-73101120 Msa0373950:intron 35.0%
GATGCTATGTGTGATTTACT+TGG + chr3_1:73101184-73101203 Msa0373950:intron 35.0%
AACAATGCAATGATACCATG+GGG - chr3_1:73101222-73101241 None:intergenic 35.0%
CACATCTGGATGATAATTTC+GGG - chr3_1:73101286-73101305 None:intergenic 35.0%
AATACTCACTTGTTCACATC+TGG - chr3_1:73101300-73101319 None:intergenic 35.0%
CACTATTGCTATGGACAAAA+TGG + chr3_1:73101408-73101427 Msa0373950:intron 35.0%
TTGCTATGGACAAAATGGTT+CGG + chr3_1:73101413-73101432 Msa0373950:intron 35.0%
ACTAGAAATTATGGCATGAC+AGG - chr3_1:73101546-73101565 None:intergenic 35.0%
TTAAATTTCTCTTCTGCACC+AGG - chr3_1:73101659-73101678 None:intergenic 35.0%
TGGTGCAGAAGAGAAATTTA+AGG + chr3_1:73101658-73101677 Msa0373950:CDS 35.0%
TCTTGTCAGATGATGAGAAA+CGG + chr3_1:73101786-73101805 Msa0373950:CDS 35.0%
CGGTCCATATATGACAAATT+TGG + chr3_1:73101806-73101825 Msa0373950:CDS 35.0%
CTCCCCAAATTTGTCATATA+TGG - chr3_1:73101813-73101832 None:intergenic 35.0%
CATATATGACAAATTTGGGG+AGG + chr3_1:73101811-73101830 Msa0373950:CDS 35.0%
! CATAATCTTTGGAGGTAACT+TGG - chr3_1:73101886-73101905 None:intergenic 35.0%
CAAGTTACCTCCAAAGATTA+TGG + chr3_1:73101884-73101903 Msa0373950:intron 35.0%
TGGAAAAGGAGATAGAGATT+AGG + chr3_1:73102107-73102126 Msa0373950:CDS 35.0%
TTCCAGAGTTACCTTCATTT+CGG - chr3_1:73102408-73102427 None:intergenic 35.0%
TGTTGTTCTTGAAGTTATCC+CGG + chr3_1:73102456-73102475 Msa0373950:CDS 35.0%
AATCTTGGGGACTACAATTA+AGG + chr3_1:73102543-73102562 Msa0373950:CDS 35.0%
TGGATTTGAAAATCCCATCT+GGG + chr3_1:73102587-73102606 Msa0373950:CDS 35.0%
!! ACACTTGTTATGGCAAAGAA+AGG + chr3_1:73102625-73102644 Msa0373950:CDS 35.0%
AAAACTGATTGAGGAACTCT+CGG + chr3_1:73102738-73102757 Msa0373950:CDS 35.0%
CACGAAATATCATCTCATAC+CGG - chr3_1:73102788-73102807 None:intergenic 35.0%
GGTATGAGATGATATTTCGT+GGG + chr3_1:73102787-73102806 Msa0373950:exon 35.0%
TTACTCCTTATAGACATAGG+CGG + chr3_1:73102892-73102911 Msa0373950:three_prime_UTR 35.0%
TCAGTCAATGTTATTCGTGA+AGG + chr3_1:73103047-73103066 Msa0373950:three_prime_UTR 35.0%
CAGTCAATGTTATTCGTGAA+GGG + chr3_1:73103048-73103067 Msa0373950:three_prime_UTR 35.0%
AGTCAATGTTATTCGTGAAG+GGG + chr3_1:73103049-73103068 Msa0373950:three_prime_UTR 35.0%
GCTTATAGAGAGGGAATGAA+AGG - chr3_1:73097583-73097602 None:intergenic 40.0%
! GTTGTTGTTGTTGTTGTTGG+GGG - chr3_1:73097709-73097728 None:intergenic 40.0%
! TAGATGGCAGTTACACCTTT+TGG + chr3_1:73098163-73098182 Msa0373950:exon 40.0%
CAGTACATCAGCTACTCAAT+GGG + chr3_1:73098186-73098205 Msa0373950:CDS 40.0%
AGTACATCAGCTACTCAATG+GGG + chr3_1:73098187-73098206 Msa0373950:CDS 40.0%
TGATGCAAACTTGGCTATTG+TGG - chr3_1:73098242-73098261 None:intergenic 40.0%
!! GTGTCTTGATGATGCAAACT+TGG - chr3_1:73098251-73098270 None:intergenic 40.0%
GTTCAGGGTTTAACCAAAAC+AGG - chr3_1:73098502-73098521 None:intergenic 40.0%
!!! CATTTTTTCTCAACTCCGGT+AGG - chr3_1:73098526-73098545 None:intergenic 40.0%
CTACCGGAGTTGAGAAAAAA+TGG + chr3_1:73098524-73098543 Msa0373950:intron 40.0%
ACCGGAGTTGAGAAAAAATG+GGG + chr3_1:73098526-73098545 Msa0373950:intron 40.0%
!!! ACCCCATTTTTTCTCAACTC+CGG - chr3_1:73098530-73098549 None:intergenic 40.0%
GTTGAAGTGCATGTTGAGAA+CGG + chr3_1:73098586-73098605 Msa0373950:intron 40.0%
CCTAATGAGTAAGGATCTGT+TGG - chr3_1:73099596-73099615 None:intergenic 40.0%
CCAACAGATCCTTACTCATT+AGG + chr3_1:73099593-73099612 Msa0373950:intron 40.0%
AGCAAAAAAGGCTGAACTTG+GGG - chr3_1:73099713-73099732 None:intergenic 40.0%
GAGCAAAAAAGGCTGAACTT+GGG - chr3_1:73099714-73099733 None:intergenic 40.0%
!!! CAAGTTCAGCCTTTTTTGCT+CGG + chr3_1:73099713-73099732 Msa0373950:CDS 40.0%
!!! AAGTTCAGCCTTTTTTGCTC+GGG + chr3_1:73099714-73099733 Msa0373950:CDS 40.0%
ATCAAACTTTGCATCGTCGA+AGG + chr3_1:73099764-73099783 Msa0373950:CDS 40.0%
TCAAACTTTGCATCGTCGAA+GGG + chr3_1:73099765-73099784 Msa0373950:CDS 40.0%
!!! ATTTTTTGACACCCCAAGGA+CGG - chr3_1:73099988-73100007 None:intergenic 40.0%
!! GCATCAACTAATGATGATGG+AGG - chr3_1:73100075-73100094 None:intergenic 40.0%
AGCGCATCAACTAATGATGA+TGG - chr3_1:73100078-73100097 None:intergenic 40.0%
TCTTGACAGAGTTAGCTGTT+AGG - chr3_1:73100260-73100279 None:intergenic 40.0%
!! TTAACGGACTAAGGCTAATG+TGG - chr3_1:73100424-73100443 None:intergenic 40.0%
!! CATTCGTAGTTAACGGACTA+AGG - chr3_1:73100433-73100452 None:intergenic 40.0%
! GTAATCTTTTGCCTAGATGC+GGG + chr3_1:73100609-73100628 Msa0373950:intron 40.0%
AATGCCAAAAAAGGACATGG+GGG + chr3_1:73100881-73100900 Msa0373950:intron 40.0%
CTCTTTGGTATTGTATTGCG+AGG + chr3_1:73100955-73100974 Msa0373950:intron 40.0%
! TTGAGAGGAAGTTTTCCAAG+AGG - chr3_1:73101030-73101049 None:intergenic 40.0%
ACAATGCAATGATACCATGG+GGG - chr3_1:73101221-73101240 None:intergenic 40.0%
GATAACTTCAATGGGAAGTG+AGG - chr3_1:73101330-73101349 None:intergenic 40.0%
TGCTATGGACAAAATGGTTC+GGG + chr3_1:73101414-73101433 Msa0373950:intron 40.0%
AAATGACATGCTGCAAGCAT+TGG - chr3_1:73101454-73101473 None:intergenic 40.0%
CTTCATCTAACAGGCAATTC+AGG - chr3_1:73101500-73101519 None:intergenic 40.0%
GCTAAACGACTTCATCTAAC+AGG - chr3_1:73101509-73101528 None:intergenic 40.0%
ACACAACTGACCCTAATTCA+TGG + chr3_1:73101721-73101740 Msa0373950:intron 40.0%
TCATCTGACAAGACCTGAAA+AGG - chr3_1:73101779-73101798 None:intergenic 40.0%
GCGACTCAAACAGATCAAAA+GGG - chr3_1:73101979-73101998 None:intergenic 40.0%
AGCGACTCAAACAGATCAAA+AGG - chr3_1:73101980-73101999 None:intergenic 40.0%
TCTGTTTGAGTCGCTATTTG+AGG + chr3_1:73101985-73102004 Msa0373950:CDS 40.0%
CTGTTTGAGTCGCTATTTGA+GGG + chr3_1:73101986-73102005 Msa0373950:CDS 40.0%
TCTTGGAATGGAGCAATGAA+TGG + chr3_1:73102031-73102050 Msa0373950:CDS 40.0%
!! TAAAGAAGCTGTTTTCGGAG+TGG + chr3_1:73102087-73102106 Msa0373950:CDS 40.0%
TCATCCAGATGTAACACATG+TGG + chr3_1:73102184-73102203 Msa0373950:CDS 40.0%
AACAAAGCGGATAAGTCTCA+AGG + chr3_1:73102345-73102364 Msa0373950:CDS 40.0%
CTTCATTTCGGACCCTTAAA+CGG - chr3_1:73102396-73102415 None:intergenic 40.0%
! GAAGGTAACTCTGGAAAGAA+AGG + chr3_1:73102412-73102431 Msa0373950:CDS 40.0%
ATTAAGGTTCCGACTGTAGA+TGG + chr3_1:73102559-73102578 Msa0373950:CDS 40.0%
GTGGATTTGAAAATCCCATC+TGG + chr3_1:73102586-73102605 Msa0373950:CDS 40.0%
! ACCAGGATCAACACTTGTTA+TGG + chr3_1:73102615-73102634 Msa0373950:CDS 40.0%
!!! TCATCGCTGCTCAGTTTTTT+AGG - chr3_1:73102715-73102734 None:intergenic 40.0%
CGATGAGAGAAAACTGATTG+AGG + chr3_1:73102729-73102748 Msa0373950:CDS 40.0%
GAAATATCATCTCATACCGG+CGG - chr3_1:73102785-73102804 None:intergenic 40.0%
CGGTATGAGATGATATTTCG+TGG + chr3_1:73102786-73102805 Msa0373950:exon 40.0%
GATGATATTTCGTGGGAAGT+TGG + chr3_1:73102794-73102813 Msa0373950:exon 40.0%
CAAATCCGCCTATGTCTATA+AGG - chr3_1:73102900-73102919 None:intergenic 40.0%
! ACATAGGCGGATTTGAAGAA+AGG + chr3_1:73102905-73102924 Msa0373950:three_prime_UTR 40.0%
CGGATTTGAAGAAAGGACAT+AGG + chr3_1:73102912-73102931 Msa0373950:three_prime_UTR 40.0%
AGAGGGAATGAAAGGGAACT+TGG - chr3_1:73097575-73097594 None:intergenic 45.0%
! TTGTTGTTGTTGTTGGGGGT+TGG - chr3_1:73097705-73097724 None:intergenic 45.0%
GTAGCTGATGTACTGCCAAA+AGG - chr3_1:73098181-73098200 None:intergenic 45.0%
GCAGTACATCAGCTACTCAA+TGG + chr3_1:73098185-73098204 Msa0373950:CDS 45.0%
TGCAAACTTGGCTATTGTGG+TGG - chr3_1:73098239-73098258 None:intergenic 45.0%
GAGCTGCTATAGCTGACAAT+TGG - chr3_1:73098422-73098441 None:intergenic 45.0%
AGCTATAGCAGCTCTACTTC+TGG + chr3_1:73098428-73098447 Msa0373950:intron 45.0%
CAGAAACTAAGATGTCGGCA+AGG + chr3_1:73098468-73098487 Msa0373950:intron 45.0%
!!! CAAGGCCTTATTGCCTGTTT+TGG + chr3_1:73098486-73098505 Msa0373950:intron 45.0%
GTTAAACCCTGAACTCCTAC+CGG + chr3_1:73098508-73098527 Msa0373950:intron 45.0%
GTTGAGAACGGCAATGAGTT+TGG + chr3_1:73098598-73098617 Msa0373950:intron 45.0%
CAATGAGTTTGGCAGAGTCA+CGG + chr3_1:73098609-73098628 Msa0373950:intron 45.0%
AAACTCACTGCCAAGAGAAG+TGG + chr3_1:73098699-73098718 Msa0373950:intron 45.0%
TCTTGCTCACCTTTGCATCT+AGG + chr3_1:73098865-73098884 Msa0373950:intron 45.0%
! TCACCTTTGCATCTAGGACA+CGG + chr3_1:73098871-73098890 Msa0373950:intron 45.0%
GTGTTGAGTAGTGCTCCTTT+AGG - chr3_1:73099205-73099224 None:intergenic 45.0%
TTTCTTGCAGTGCTACAAGC+AGG + chr3_1:73099671-73099690 Msa0373950:intron 45.0%
CGAGCAAAAAAGGCTGAACT+TGG - chr3_1:73099715-73099734 None:intergenic 45.0%
CAAGGAATCCCGAGCAAAAA+AGG - chr3_1:73099725-73099744 None:intergenic 45.0%
CAAACTTTGCATCGTCGAAG+GGG + chr3_1:73099766-73099785 Msa0373950:CDS 45.0%
TCTAATATGTACCCGCATGC+AGG + chr3_1:73099953-73099972 Msa0373950:intron 45.0%
CAAGTGGCAGACTTCATTGA+TGG - chr3_1:73100796-73100815 None:intergenic 45.0%
TAAACAGCCGTTTAGGGGTT+GGG - chr3_1:73100853-73100872 None:intergenic 45.0%
ATAAACAGCCGTTTAGGGGT+TGG - chr3_1:73100854-73100873 None:intergenic 45.0%
ATGCCAAAAAAGGACATGGG+GGG + chr3_1:73100882-73100901 Msa0373950:intron 45.0%
! TGGTTATGCATTTTCCCCCA+TGG + chr3_1:73101204-73101223 Msa0373950:intron 45.0%
!! GATAATTTCGGGCTAGCTTC+CGG - chr3_1:73101275-73101294 None:intergenic 45.0%
AGTGGGAACAGAGCAAAAGA+CGG - chr3_1:73101366-73101385 None:intergenic 45.0%
ACTTTATGCTGCAGAGATCC+TGG + chr3_1:73101638-73101657 Msa0373950:intron 45.0%
GGAAATCAGTAATGCGTACG+AGG + chr3_1:73101679-73101698 Msa0373950:CDS 45.0%
TGCGTACGAGGTAAAACTAG+AGG + chr3_1:73101691-73101710 Msa0373950:intron 45.0%
TATGACAAATTTGGGGAGGC+AGG + chr3_1:73101815-73101834 Msa0373950:CDS 45.0%
ATGACAAATTTGGGGAGGCA+GGG + chr3_1:73101816-73101835 Msa0373950:CDS 45.0%
CTTAAAGGTTCACCGGGATT+TGG + chr3_1:73101839-73101858 Msa0373950:CDS 45.0%
!! AGCTGTTTTCGGAGTGGAAA+AGG + chr3_1:73102093-73102112 Msa0373950:CDS 45.0%
ATTAGGCGACTAGAGAAGTG+TGG + chr3_1:73102124-73102143 Msa0373950:CDS 45.0%
ATGGTTCAGGAGCTAAACCA+GGG + chr3_1:73102155-73102174 Msa0373950:CDS 45.0%
CATCTGGATGATTTAGTCCC+TGG - chr3_1:73102175-73102194 None:intergenic 45.0%
TCCAGATGTAACACATGTGG+TGG + chr3_1:73102187-73102206 Msa0373950:CDS 45.0%
ACCACCACATGTGTTACATC+TGG - chr3_1:73102191-73102210 None:intergenic 45.0%
ATGTAACACATGTGGTGGTC+AGG + chr3_1:73102192-73102211 Msa0373950:CDS 45.0%
TGTAACACATGTGGTGGTCA+GGG + chr3_1:73102193-73102212 Msa0373950:CDS 45.0%
ACTCAAACAAGGACTCCGTT+GGG + chr3_1:73102226-73102245 Msa0373950:CDS 45.0%
GACTGCTGAAAGATACCCAA+CGG - chr3_1:73102244-73102263 None:intergenic 45.0%
!! ATGACTTGCTCGTCTTGCAA+TGG + chr3_1:73102265-73102284 Msa0373950:CDS 45.0%
!! TGACTTGCTCGTCTTGCAAT+GGG + chr3_1:73102266-73102285 Msa0373950:CDS 45.0%
ATAAGTCTCAAGGTTCCAGC+CGG + chr3_1:73102355-73102374 Msa0373950:CDS 45.0%
TGGATTCTGGTAGCCGTTTA+AGG + chr3_1:73102380-73102399 Msa0373950:CDS 45.0%
GGATTCTGGTAGCCGTTTAA+GGG + chr3_1:73102381-73102400 Msa0373950:CDS 45.0%
CGTTTAAGGGTCCGAAATGA+AGG + chr3_1:73102394-73102413 Msa0373950:CDS 45.0%
GTCCGAAATGAAGGTAACTC+TGG + chr3_1:73102403-73102422 Msa0373950:CDS 45.0%
! GGTAACTCTGGAAAGAAAGG+TGG + chr3_1:73102415-73102434 Msa0373950:CDS 45.0%
AGAACAACAAAGAGGTCACC+AGG - chr3_1:73102445-73102464 None:intergenic 45.0%
GTGTCTTCTCGTTTAAGCAC+GGG - chr3_1:73102484-73102503 None:intergenic 45.0%
GGTGTCTTCTCGTTTAAGCA+CGG - chr3_1:73102485-73102504 None:intergenic 45.0%
TCCACCATTCCATCTACAGT+CGG - chr3_1:73102571-73102590 None:intergenic 45.0%
!! GCCATAACAAGTGTTGATCC+TGG - chr3_1:73102619-73102638 None:intergenic 45.0%
GGATGCTTCATTCATGACCT+TGG + chr3_1:73102856-73102875 Msa0373950:three_prime_UTR 45.0%
!! TTGTAAAAAAAAATATAAAA+AGG - chr3_1:73099862-73099881 None:intergenic 5.0%
!!! TTTTTATATTTTTTTTTACA+AGG + chr3_1:73099861-73099880 Msa0373950:intron 5.0%
!!! TTTTATATTTTTTTTTACAA+GGG + chr3_1:73099862-73099881 Msa0373950:intron 5.0%
GGGAATGAAAGGGAACTTGG+TGG - chr3_1:73097572-73097591 None:intergenic 50.0%
GAAGTTGGAAGGAGAGGATG+AGG - chr3_1:73097649-73097668 None:intergenic 50.0%
GAGAGAGAAGTTGGAAGGAG+AGG - chr3_1:73097655-73097674 None:intergenic 50.0%
CTTGGGAGAGAGAAGTTGGA+AGG - chr3_1:73097660-73097679 None:intergenic 50.0%
ACTGCTTGGGAGAGAGAAGT+TGG - chr3_1:73097664-73097683 None:intergenic 50.0%
! TATAGGCGCTGCTACTGCTT+GGG - chr3_1:73097677-73097696 None:intergenic 50.0%
! TTATAGGCGCTGCTACTGCT+TGG - chr3_1:73097678-73097697 None:intergenic 50.0%
GTTGGGGGTTGGAAGCTTAT+AGG - chr3_1:73097694-73097713 None:intergenic 50.0%
GCACTTATTTCCGGAGCAGA+AGG - chr3_1:73098035-73098054 None:intergenic 50.0%
GTGGATCTGGCAACAATCTG+AGG - chr3_1:73098220-73098239 None:intergenic 50.0%
!! CTTGGCTATTGTGGTGGATC+TGG - chr3_1:73098233-73098252 None:intergenic 50.0%
TCAACTCCGGTAGGAGTTCA+GGG - chr3_1:73098517-73098536 None:intergenic 50.0%
ACACCGTGTCCTAGATGCAA+AGG - chr3_1:73098877-73098896 None:intergenic 50.0%
GGAGGGTCTTACAAAGTCAC+TGG + chr3_1:73099271-73099290 Msa0373950:intron 50.0%
AGGACTACTACACCGTCCTT+GGG + chr3_1:73099973-73099992 Msa0373950:intron 50.0%
AGAGAGAGAGAGAGAGAGAG+AGG + chr3_1:73100519-73100538 Msa0373950:intron 50.0%
GAGAGAGAGAGAGAGAGAGA+GGG + chr3_1:73100518-73100537 Msa0373950:intron 50.0%
TCTTTGCATCTCCCGCATCT+AGG - chr3_1:73100623-73100642 None:intergenic 50.0%
AAACAGCCGTTTAGGGGTTG+GGG - chr3_1:73100852-73100871 None:intergenic 50.0%
!!! TAGCCCCCCATGTCCTTTTT+TGG - chr3_1:73100888-73100907 None:intergenic 50.0%
ATCCTTGTACGTGGTCCTCT+TGG + chr3_1:73101012-73101031 Msa0373950:intron 50.0%
TTCCAAGAGGACCACGTACA+AGG - chr3_1:73101017-73101036 None:intergenic 50.0%
TGAACTTCGGCAGTCTTGAG+AGG - chr3_1:73101045-73101064 None:intergenic 50.0%
AAAGGTTCACCGGGATTTGG+TGG + chr3_1:73101842-73101861 Msa0373950:CDS 50.0%
! AAGGTTCACCGGGATTTGGT+GGG + chr3_1:73101843-73101862 Msa0373950:CDS 50.0%
TGAGTCGCTATTTGAGGGCA+TGG + chr3_1:73101991-73102010 Msa0373950:CDS 50.0%
! TCGCTATTTGAGGGCATGGA+TGG + chr3_1:73101995-73102014 Msa0373950:CDS 50.0%
ATGGTCGCAGCAGACAATCT+TGG + chr3_1:73102014-73102033 Msa0373950:CDS 50.0%
CGCAGCAGACAATCTTGGAA+TGG + chr3_1:73102019-73102038 Msa0373950:CDS 50.0%
! GAGAAGTGTGGTACTTGCGA+TGG + chr3_1:73102136-73102155 Msa0373950:CDS 50.0%
TGTGGTACTTGCGATGGTTC+AGG + chr3_1:73102142-73102161 Msa0373950:CDS 50.0%
GATGGTTCAGGAGCTAAACC+AGG + chr3_1:73102154-73102173 Msa0373950:CDS 50.0%
!! GACGGGTTGTCACTCAAACA+AGG + chr3_1:73102215-73102234 Msa0373950:CDS 50.0%
CACTCAAACAAGGACTCCGT+TGG + chr3_1:73102225-73102244 Msa0373950:CDS 50.0%
ACCCCTTGCAGTACATGTTC+TGG + chr3_1:73102304-73102323 Msa0373950:CDS 50.0%
CCCAGAACATGTACTGCAAG+GGG - chr3_1:73102308-73102327 None:intergenic 50.0%
CCCCTTGCAGTACATGTTCT+GGG + chr3_1:73102305-73102324 Msa0373950:CDS 50.0%
CCCCAGAACATGTACTGCAA+GGG - chr3_1:73102309-73102328 None:intergenic 50.0%
CCCTTGCAGTACATGTTCTG+GGG + chr3_1:73102306-73102325 Msa0373950:CDS 50.0%
TCCCCAGAACATGTACTGCA+AGG - chr3_1:73102310-73102329 None:intergenic 50.0%
!! TGCAGTACATGTTCTGGGGA+TGG + chr3_1:73102310-73102329 Msa0373950:CDS 50.0%
!!! TCCGCTTTGTTTTCCTCACC+CGG - chr3_1:73102336-73102355 None:intergenic 50.0%
GGAAAGAAAGGTGGTTCTCC+TGG + chr3_1:73102424-73102443 Msa0373950:CDS 50.0%
TCTCGTTTAAGCACGGGATC+CGG - chr3_1:73102478-73102497 None:intergenic 50.0%
GGTTCCGACTGTAGATGGAA+TGG + chr3_1:73102564-73102583 Msa0373950:CDS 50.0%
TCCGACTGTAGATGGAATGG+TGG + chr3_1:73102567-73102586 Msa0373950:CDS 50.0%
ATCCTGGTTGTGTCCCAGAT+GGG - chr3_1:73102603-73102622 None:intergenic 50.0%
GAACTCTCGGAGTTGAGCAA+AGG + chr3_1:73102751-73102770 Msa0373950:CDS 50.0%
GGAAGGAGAGGATGAGGAAG+TGG - chr3_1:73097643-73097662 None:intergenic 55.0%
CTCAACTCCGGTAGGAGTTC+AGG - chr3_1:73098518-73098537 None:intergenic 55.0%
CAAAGGTGAGCAAGAGAGCC+AGG - chr3_1:73098860-73098879 None:intergenic 55.0%
TGCATCGTCGAAGGGGATCA+AGG + chr3_1:73099773-73099792 Msa0373950:CDS 55.0%
GGTGTAGTAGTCCTGCATGC+GGG - chr3_1:73099967-73099986 None:intergenic 55.0%
CGGTGTAGTAGTCCTGCATG+CGG - chr3_1:73099968-73099987 None:intergenic 55.0%
CAGGACTACTACACCGTCCT+TGG + chr3_1:73099972-73099991 Msa0373950:intron 55.0%
GGACTACTACACCGTCCTTG+GGG + chr3_1:73099974-73099993 Msa0373950:intron 55.0%
AGAGAGAGAGAGAGAGGGAG+AGG + chr3_1:73100531-73100550 Msa0373950:intron 55.0%
GAGAGAGAGAGAGAGGGAGA+GGG + chr3_1:73100532-73100551 Msa0373950:intron 55.0%
AACAGCCGTTTAGGGGTTGG+GGG - chr3_1:73100851-73100870 None:intergenic 55.0%
TTTGGGGAGGCAGGGCTTAA+AGG + chr3_1:73101824-73101843 Msa0373950:CDS 55.0%
GGCAGGGCTTAAAGGTTCAC+CGG + chr3_1:73101832-73101851 Msa0373950:CDS 55.0%
GCAGGGCTTAAAGGTTCACC+GGG + chr3_1:73101833-73101852 Msa0373950:CDS 55.0%
!! AGGTTCACCGGGATTTGGTG+GGG + chr3_1:73101844-73101863 Msa0373950:CDS 55.0%
ACACATGTGGTGGTCAGGGA+CGG + chr3_1:73102197-73102216 Msa0373950:CDS 55.0%
TGCTCGTCTTGCAATGGGAC+TGG + chr3_1:73102271-73102290 Msa0373950:CDS 55.0%
!! GTACATGTTCTGGGGATGGC+CGG + chr3_1:73102314-73102333 Msa0373950:CDS 55.0%
!! TACATGTTCTGGGGATGGCC+GGG + chr3_1:73102315-73102334 Msa0373950:CDS 55.0%
GCCGGGTGAGGAAAACAAAG+CGG + chr3_1:73102332-73102351 Msa0373950:CDS 55.0%
ACGGCTACCAGAATCCACAC+CGG - chr3_1:73102377-73102396 None:intergenic 55.0%
CTCGTTTAAGCACGGGATCC+GGG - chr3_1:73102477-73102496 None:intergenic 55.0%
! ATCCCATCTGGGACACAACC+AGG + chr3_1:73102598-73102617 Msa0373950:CDS 55.0%
GATCCTGGTTGTGTCCCAGA+TGG - chr3_1:73102604-73102623 None:intergenic 55.0%
AGAGAGAGAGGGAGAGGGAG+AGG + chr3_1:73100537-73100556 Msa0373950:intron 60.0%
GAGAGAGAGGGAGAGGGAGA+GGG + chr3_1:73100538-73100557 Msa0373950:intron 60.0%
ACCCTCCCCCAACCCCTAAA+CGG + chr3_1:73100843-73100862 Msa0373950:intron 60.0%
!! GGTTCACCGGGATTTGGTGG+GGG + chr3_1:73101845-73101864 Msa0373950:CDS 60.0%
CACATGTGGTGGTCAGGGAC+GGG + chr3_1:73102198-73102217 Msa0373950:CDS 60.0%
TCTCAAGGTTCCAGCCGGTG+TGG + chr3_1:73102360-73102379 Msa0373950:CDS 60.0%
GTTCCAGCCGGTGTGGATTC+TGG + chr3_1:73102367-73102386 Msa0373950:CDS 60.0%
CTACCAGAATCCACACCGGC+TGG - chr3_1:73102373-73102392 None:intergenic 60.0%
AGCAAAGGCAAGACTGCCGC+CGG + chr3_1:73102766-73102785 Msa0373950:CDS 60.0%
GCCGTTTAGGGGTTGGGGGA+GGG - chr3_1:73100847-73100866 None:intergenic 65.0%
AGCCGTTTAGGGGTTGGGGG+AGG - chr3_1:73100848-73100867 None:intergenic 65.0%
!! ACCGGGATTTGGTGGGGGCA+TGG + chr3_1:73101850-73101869 Msa0373950:CDS 65.0%
CCCATGCCCCCACCAAATCC+CGG - chr3_1:73101854-73101873 None:intergenic 65.0%
!! CCGGGATTTGGTGGGGGCAT+GGG + chr3_1:73101851-73101870 Msa0373950:CDS 65.0%
!! CGGGATTTGGTGGGGGCATG+GGG + chr3_1:73101852-73101871 Msa0373950:CDS 65.0%
!! GGGATTTGGTGGGGGCATGG+GGG + chr3_1:73101853-73101872 Msa0373950:CDS 65.0%
!! GTTCTGGGGATGGCCGGGTG+AGG + chr3_1:73102320-73102339 Msa0373950:CDS 70.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 73097534 73103090 73097534 ID=Msa0373950;Name=Msa0373950
chr3_1 mRNA 73097534 73103090 73097534 ID=Msa0373950-mRNA-1;Parent=Msa0373950;Name=Msa0373950-mRNA-1;_AED=0.05;_eAED=0.05;_QI=273|1|1|1|0.85|0.75|8|292|438
chr3_1 exon 73097534 73097738 73097534 ID=Msa0373950-mRNA-1:exon:16575;Parent=Msa0373950-mRNA-1
chr3_1 exon 73098098 73098272 73098098 ID=Msa0373950-mRNA-1:exon:16576;Parent=Msa0373950-mRNA-1
chr3_1 exon 73099681 73099816 73099681 ID=Msa0373950-mRNA-1:exon:16577;Parent=Msa0373950-mRNA-1
chr3_1 exon 73099975 73100032 73099975 ID=Msa0373950-mRNA-1:exon:16578;Parent=Msa0373950-mRNA-1
chr3_1 exon 73101268 73101310 73101268 ID=Msa0373950-mRNA-1:exon:16579;Parent=Msa0373950-mRNA-1
chr3_1 exon 73101652 73101700 73101652 ID=Msa0373950-mRNA-1:exon:16580;Parent=Msa0373950-mRNA-1
chr3_1 exon 73101785 73101874 73101785 ID=Msa0373950-mRNA-1:exon:16581;Parent=Msa0373950-mRNA-1
chr3_1 exon 73101965 73103090 73101965 ID=Msa0373950-mRNA-1:exon:16582;Parent=Msa0373950-mRNA-1
chr3_1 five_prime_UTR 73097534 73097738 73097534 ID=Msa0373950-mRNA-1:five_prime_utr;Parent=Msa0373950-mRNA-1
chr3_1 five_prime_UTR 73098098 73098165 73098098 ID=Msa0373950-mRNA-1:five_prime_utr;Parent=Msa0373950-mRNA-1
chr3_1 CDS 73098166 73098272 73098166 ID=Msa0373950-mRNA-1:cds;Parent=Msa0373950-mRNA-1
chr3_1 CDS 73099681 73099816 73099681 ID=Msa0373950-mRNA-1:cds;Parent=Msa0373950-mRNA-1
chr3_1 CDS 73099975 73100032 73099975 ID=Msa0373950-mRNA-1:cds;Parent=Msa0373950-mRNA-1
chr3_1 CDS 73101268 73101310 73101268 ID=Msa0373950-mRNA-1:cds;Parent=Msa0373950-mRNA-1
chr3_1 CDS 73101652 73101700 73101652 ID=Msa0373950-mRNA-1:cds;Parent=Msa0373950-mRNA-1
chr3_1 CDS 73101785 73101874 73101785 ID=Msa0373950-mRNA-1:cds;Parent=Msa0373950-mRNA-1
chr3_1 CDS 73101965 73102798 73101965 ID=Msa0373950-mRNA-1:cds;Parent=Msa0373950-mRNA-1
chr3_1 three_prime_UTR 73102799 73103090 73102799 ID=Msa0373950-mRNA-1:three_prime_utr;Parent=Msa0373950-mRNA-1
Gene Sequence

>Msa0373950

ATGGCAGTTACACCTTTTGGCAGTACATCAGCTACTCAATGGGGAATTCGTCCTCAGATTGTTGCCAGATCCACCACAATAGCCAAGTTTGCATCATCAAGACACAATGCTACAAGCAGGATAAGCTTTATGGCTGCCCCAAGTTCAGCCTTTTTTGCTCGGGATTCCTTGCGTTTTAATATAGGTTCACATCAAACTTTGCATCGTCGAAGGGGATCAAGGTTGATAGTTAGAGCAGATGCAGACTACTACACCGTCCTTGGGGTGTCAAAAAATTCTACTAAATCTGAAATTAAGACTGCTTACCGGAAGCTAGCCCGAAATTATCATCCAGATGTGAACAAAGATCCTGGTGCAGAAGAGAAATTTAAGGAAATCAGTAATGCGTACGAGGTCTTGTCAGATGATGAGAAACGGTCCATATATGACAAATTTGGGGAGGCAGGGCTTAAAGGTTCACCGGGATTTGGTGGGGGCATGGGGGATTTCAGCAACCCTTTTGATCTGTTTGAGTCGCTATTTGAGGGCATGGATGGTCGCAGCAGACAATCTTGGAATGGAGCAATGAATGGCGAAGATGAGTATTACAGTCTTGTTTTGAACTTTAAAGAAGCTGTTTTCGGAGTGGAAAAGGAGATAGAGATTAGGCGACTAGAGAAGTGTGGTACTTGCGATGGTTCAGGAGCTAAACCAGGGACTAAATCATCCAGATGTAACACATGTGGTGGTCAGGGACGGGTTGTCACTCAAACAAGGACTCCGTTGGGTATCTTTCAGCAGTCTATGACTTGCTCGTCTTGCAATGGGACTGGAGAAACTCGAACCCCTTGCAGTACATGTTCTGGGGATGGCCGGGTGAGGAAAACAAAGCGGATAAGTCTCAAGGTTCCAGCCGGTGTGGATTCTGGTAGCCGTTTAAGGGTCCGAAATGAAGGTAACTCTGGAAAGAAAGGTGGTTCTCCTGGTGACCTCTTTGTTGTTCTTGAAGTTATCCCGGATCCCGTGCTTAAACGAGAAGACACCAACATTTTATATTCTTGTAAAGTGTCTTATATTGATGCAATCTTGGGGACTACAATTAAGGTTCCGACTGTAGATGGAATGGTGGATTTGAAAATCCCATCTGGGACACAACCAGGATCAACACTTGTTATGGCAAAGAAAGGTGTTCCTCTGCTGAATAAGAAGAATATGAGGGGCGATCAATTCGTTCGAGTGCAAGTTGAGATTCCTAAAAAACTGAGCAGCGATGAGAGAAAACTGATTGAGGAACTCTCGGAGTTGAGCAAAGGCAAGACTGCCGCCGGTATGAGATGA
Protein sequence

>Msa0373950

MAVTPFGSTSATQWGIRPQIVARSTTIAKFASSRHNATSRISFMAAPSSAFFARDSLRFNIGSHQTLHRRRGSRLIVRADADYYTVLGVSKNSTKSEIKTAYRKLARNYHPDVNKDPGAEEKFKEISNAYEVLSDDEKRSIYDKFGEAGLKGSPGFGGGMGDFSNPFDLFESLFEGMDGRSRQSWNGAMNGEDEYYSLVLNFKEAVFGVEKEIEIRRLEKCGTCDGSGAKPGTKSSRCNTCGGQGRVVTQTRTPLGIFQQSMTCSSCNGTGETRTPCSTCSGDGRVRKTKRISLKVPAGVDSGSRLRVRNEGNSGKKGGSPGDLFVVLEVIPDPVLKREDTNILYSCKVSYIDAILGTTIKVPTVDGMVDLKIPSGTQPGSTLVMAKKGVPLLNKKNMRGDQFVRVQVEIPKKLSSDERKLIEELSELSKGKTAAGMR*