AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0007160


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0007160 MtrunA17_Chr1g0148731 79.141 163 26 2 1 155 1 163 1.81e-66 201
Msa0007160 MtrunA17_Chr2g0331271 39.552 134 71 4 6 130 11 143 2.81e-19 80.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0007160 AT4G32590.4 78.652 89 19 0 43 131 54 142 3.53e-37 127
Msa0007160 AT4G32590.1 63.333 120 37 1 43 155 54 173 5.35e-36 124
Msa0007160 AT4G32590.3 78.409 88 19 0 43 130 54 141 7.18e-36 124
Msa0007160 AT4G32590.5 80.597 67 13 0 43 109 54 120 4.42e-24 92.0
Msa0007160 AT4G32590.2 75.510 49 12 0 43 91 54 102 1.01e-20 83.2
Msa0007160 AT3G16250.1 39.844 128 72 4 18 143 43 167 1.65e-17 77.0

Find 73 sgRNAs with CRISPR-Local

Find 174 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTTTGCGCATGCTCTATTT+TGG 0.241776 1_1:-10227533 None:intergenic
CAAGCCAACCTCCAAGATTC+AGG 0.247976 1_1:-10226378 None:intergenic
TCATTACAACCAAACATATA+AGG 0.258459 1_1:-10227423 None:intergenic
GCAAGAAAAGTTAAGAGTTT+AGG 0.259473 1_1:+10224432 Msa0007160:five_prime_UTR
TTTGGCTCTTGAATTGGATT+TGG 0.275795 1_1:-10227515 None:intergenic
GACCCATCACCCTCTGGTTT+TGG 0.288686 1_1:-10224729 None:intergenic
GAAAATAAATGGTTGGATTC+CGG 0.304867 1_1:-10224543 None:intergenic
TATAATTTCCCTTATATGTT+TGG 0.308359 1_1:+10227414 Msa0007160:three_prime_UTR
ATGAACTCCAGCTCTATTTC+CGG 0.309865 1_1:-10224625 None:intergenic
TCCGGAGGAGAAGGAGATTC+AGG 0.327786 1_1:-10224607 None:intergenic
TCGCCGCCGGGGAAAATAAA+TGG 0.351768 1_1:-10224554 None:intergenic
AATGGTTGGATTCCGGTTAC+CGG 0.353946 1_1:-10224536 None:intergenic
AGAGGGTGATGGGTCGTTTC+CGG 0.362222 1_1:+10224737 Msa0007160:CDS
GTAAACAGAAACCTGAATCT+TGG 0.374507 1_1:+10226367 Msa0007160:intron
CAGAGGGCGCGAAGCAGAAA+AGG 0.385776 1_1:+10224468 Msa0007160:five_prime_UTR
TTACCGGCGGTGAGTGGAAC+TGG 0.390189 1_1:-10224520 None:intergenic
AAATAGAGCTGGAGTTCATT+GGG 0.393000 1_1:+10224629 Msa0007160:CDS
GAAATAGAGCTGGAGTTCAT+TGG 0.409789 1_1:+10224628 Msa0007160:CDS
TTGGCTTGTCAAACTATTGT+TGG 0.412378 1_1:+10226393 Msa0007160:CDS
TTCCACTCACCGCCGGTAAC+CGG 0.413919 1_1:+10224524 Msa0007160:CDS
TCCAAGTGAAGTCAGTTAAC+TGG 0.415358 1_1:-10224406 None:intergenic
CATTACAACCAAACATATAA+GGG 0.423119 1_1:-10227422 None:intergenic
AAGTTGATGAACTGCGGCGG+AGG 0.442332 1_1:+10225605 Msa0007160:CDS
GTTCTGTTGCAGATCATTGA+AGG 0.445150 1_1:+10225875 Msa0007160:intron
TGGCTTGTCAAACTATTGTT+GGG 0.446620 1_1:+10226394 Msa0007160:CDS
CACTTGGTGACTATTCTTGA+CGG 0.456734 1_1:+10227450 Msa0007160:three_prime_UTR
AACTGAGTTCGGTCGCCGCC+GGG 0.457166 1_1:-10224566 None:intergenic
GCCTGAATCTCCTTCTCCTC+CGG 0.472889 1_1:+10224606 Msa0007160:CDS
GCCACGAAACAAACTGAGTT+CGG 0.475849 1_1:-10224577 None:intergenic
GCCAGTTAACTGACTTCACT+TGG 0.486232 1_1:+10224405 Msa0007160:five_prime_UTR
TTGATGAACTGCGGCGGAGG+GGG 0.486976 1_1:+10225608 Msa0007160:CDS
TGATATTACTTCTTCCATTG+AGG 0.490864 1_1:-10227289 None:intergenic
AAAATCCAGGATATGCTACT+TGG 0.499843 1_1:-10227314 None:intergenic
ACCGAACTCAGTTTGTTTCG+TGG 0.500054 1_1:+10224576 Msa0007160:CDS
AGCTCTATTTCCGGAGGAGA+AGG 0.500109 1_1:-10224616 None:intergenic
AGTTGATGAACTGCGGCGGA+GGG 0.500666 1_1:+10225606 Msa0007160:CDS
TTCTCCTCCGGAAATAGAGC+TGG 0.505143 1_1:+10224618 Msa0007160:CDS
AAACTGAGTTCGGTCGCCGC+CGG 0.506246 1_1:-10224567 None:intergenic
ATTGCTTTCACTTTATCCAC+CGG 0.506855 1_1:-10224756 None:intergenic
TCAAGCCAAGTAGCATATCC+TGG 0.509593 1_1:+10227309 Msa0007160:CDS
CAGCCAAAACCAGAGGGTGA+TGG 0.518767 1_1:+10224726 Msa0007160:intron
GAAACCTGAATCTTGGAGGT+TGG 0.519969 1_1:+10226374 Msa0007160:intron
TTCCGGTTACCGGCGGTGAG+TGG 0.524356 1_1:-10224526 None:intergenic
TGAACTAAAATATCTTAAGA+AGG 0.529764 1_1:+10225928 Msa0007160:CDS
TTGTTCAAAGGATTCCTCAA+TGG 0.532551 1_1:+10227275 Msa0007160:CDS
GCGCGAAGCAGAAAAGGAAA+TGG 0.533002 1_1:+10224474 Msa0007160:exon
ATGCAAACTGTATAAAATCC+AGG 0.536772 1_1:-10227327 None:intergenic
GTTGCAGATCATTGAAGGAA+AGG 0.538608 1_1:+10225880 Msa0007160:intron
AACAGAAACCTGAATCTTGG+AGG 0.539774 1_1:+10226370 Msa0007160:intron
AGCCAAAACCAGAGGGTGAT+GGG 0.553792 1_1:+10224727 Msa0007160:intron
GGAAACGACCCATCACCCTC+TGG 0.569559 1_1:-10224735 None:intergenic
CGCCGGGGAAAATAAATGGT+TGG 0.580484 1_1:-10224550 None:intergenic
TAAGCGGAGAGAAGCTGATG+AGG 0.586456 1_1:+10224778 Msa0007160:CDS
GTTGGGAACAAAGAAAACTC+TGG 0.588901 1_1:+10226411 Msa0007160:CDS
GGGTGATGGGTCGTTTCCGG+TGG 0.591158 1_1:+10224740 Msa0007160:CDS
GTTGATGAACTGCGGCGGAG+GGG 0.596821 1_1:+10225607 Msa0007160:CDS
ACTGAGTTCGGTCGCCGCCG+GGG 0.605244 1_1:-10224565 None:intergenic
TGGTTGTAATGATTGTCACT+TGG 0.614563 1_1:+10227434 Msa0007160:three_prime_UTR
ACACCAGTTCCACTCACCGC+CGG 0.614691 1_1:+10224517 Msa0007160:CDS
AGGAACACACACACAACAGA+GGG 0.629974 1_1:+10224452 Msa0007160:five_prime_UTR
TTGATTGCAGCCAAAACCAG+AGG 0.640341 1_1:+10224719 Msa0007160:intron
TGATTGCAGCCAAAACCAGA+GGG 0.640990 1_1:+10224720 Msa0007160:intron
AACTCCAGCTCTATTTCCGG+AGG 0.644295 1_1:-10224622 None:intergenic
GAACAAAGAAAACTCTGGCA+AGG 0.650067 1_1:+10226416 Msa0007160:CDS
CTGCGGAACTTGCATAGTCG+AGG 0.652849 1_1:+10225634 Msa0007160:CDS
GGTTGGATTCCGGTTACCGG+CGG 0.656174 1_1:-10224533 None:intergenic
GCTGATGAGGAGCATCATGT+CGG 0.664064 1_1:+10224791 Msa0007160:CDS
GGAAAGTTGATGAACTGCGG+CGG 0.675156 1_1:+10225602 Msa0007160:CDS
TAGGAACACACACACAACAG+AGG 0.696456 1_1:+10224451 Msa0007160:five_prime_UTR
GATAAAGTGAAAGCAATAAG+CGG 0.697309 1_1:+10224762 Msa0007160:CDS
CAGGGAAAGTTGATGAACTG+CGG 0.704168 1_1:+10225599 Msa0007160:intron
AATAGAGCTGGAGTTCATTG+GGG 0.704244 1_1:+10224630 Msa0007160:CDS
TGGTATGATACATACATACG+TGG 0.709659 1_1:-10224835 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTTCTTCTATAAAAAAA+AGG + chr1_1:10225147-10225166 Msa0007160:intron 10.0%
!!! TAAATTTTTAGATTAATCAT+CGG + chr1_1:10225387-10225406 Msa0007160:intron 10.0%
!! TATAATAATAACAATAAGAA+TGG - chr1_1:10225703-10225722 None:intergenic 10.0%
!! TATAAAATATATTCATTTCT+TGG - chr1_1:10225788-10225807 None:intergenic 10.0%
!! ATTAATTAATTTCAAAATCT+AGG - chr1_1:10226328-10226347 None:intergenic 10.0%
!!! AACAATTTTCAATATATATA+TGG + chr1_1:10226901-10226920 Msa0007160:intron 10.0%
!!! TTTTACTATGACTATTATTA+AGG - chr1_1:10225090-10225109 None:intergenic 15.0%
!!! TCATTTTTTAACCAAATTAT+TGG - chr1_1:10225435-10225454 None:intergenic 15.0%
!! AAAATGAACATTTCATATTA+TGG + chr1_1:10225448-10225467 Msa0007160:intron 15.0%
!! AAACTTCTTATATCATATAT+AGG - chr1_1:10226142-10226161 None:intergenic 15.0%
!!! TTCATTTATATTTTCTATGA+TGG + chr1_1:10227241-10227260 Msa0007160:intron 15.0%
!!! AATGAAATGAAATTTTTAGA+TGG + chr1_1:10227570-10227589 Msa0007160:three_prime_UTR 15.0%
!! TTCAATTAATAACAATGAGT+TGG - chr1_1:10225128-10225147 None:intergenic 20.0%
!! TTTAAATATGAACGTTACAT+TGG + chr1_1:10225260-10225279 Msa0007160:intron 20.0%
!! ATATTATGGCAATATATATC+AGG + chr1_1:10225462-10225481 Msa0007160:intron 20.0%
!!! TTTTCTATCTTCTACAAAAA+CGG - chr1_1:10225500-10225519 None:intergenic 20.0%
!! ATTATAGTGTAATAATCATC+AGG + chr1_1:10225717-10225736 Msa0007160:intron 20.0%
!! TGAACTAAAATATCTTAAGA+AGG + chr1_1:10225928-10225947 Msa0007160:CDS 20.0%
!!! ATTTTAACACATTGTTTTCA+AGG + chr1_1:10226036-10226055 Msa0007160:intron 20.0%
!! GAAATTATAATACTTCTCAT+TGG - chr1_1:10226070-10226089 None:intergenic 20.0%
!! AAACAGACTTAATTCATATA+AGG - chr1_1:10227031-10227050 None:intergenic 20.0%
!! CTTCAATTATCATATCATAA+GGG - chr1_1:10227060-10227079 None:intergenic 20.0%
!! TATAATTTCCCTTATATGTT+TGG + chr1_1:10227414-10227433 Msa0007160:three_prime_UTR 20.0%
!! AAAGAGAAAAAGTACATGTA+TGG - chr1_1:10224880-10224899 None:intergenic 25.0%
! GATACTTCTTACCAATAATT+TGG + chr1_1:10225421-10225440 Msa0007160:intron 25.0%
! AATATATATCAGGAACCAAA+AGG + chr1_1:10225472-10225491 Msa0007160:intron 25.0%
! ATATATATCAGGAACCAAAA+GGG + chr1_1:10225473-10225492 Msa0007160:intron 25.0%
!! GTTTTTGTAGAAGATAGAAA+AGG + chr1_1:10225499-10225518 Msa0007160:intron 25.0%
! AAAATTTGAACTGTTACAAC+AGG + chr1_1:10225580-10225599 Msa0007160:intron 25.0%
! AAATTTGAACTGTTACAACA+GGG + chr1_1:10225581-10225600 Msa0007160:intron 25.0%
! TAAAATGCTTAGCACATTAT+TGG + chr1_1:10226008-10226027 Msa0007160:intron 25.0%
! TTGAAAGTTGTTTGAAAGTA+TGG + chr1_1:10226091-10226110 Msa0007160:intron 25.0%
!!! TATTAACTGATTTGAGCTAA+AGG - chr1_1:10226254-10226273 None:intergenic 25.0%
! TAAATCATGATCATGGTATA+TGG - chr1_1:10226566-10226585 None:intergenic 25.0%
!! TCAAGTAATGTGAGAAATTT+TGG - chr1_1:10226605-10226624 None:intergenic 25.0%
!! TCAACTAAGAACAAATTTTG+AGG + chr1_1:10226684-10226703 Msa0007160:intron 25.0%
!! CAACTAAGAACAAATTTTGA+GGG + chr1_1:10226685-10226704 Msa0007160:intron 25.0%
! GCTTCAATTATCATATCATA+AGG - chr1_1:10227061-10227080 None:intergenic 25.0%
! ATGATATGATAATTGAAGCA+TGG + chr1_1:10227062-10227081 Msa0007160:intron 25.0%
! GGAATATTCTTCAATTTGTA+TGG + chr1_1:10227139-10227158 Msa0007160:intron 25.0%
!! TATTTTCTATGATGGCTTTT+AGG + chr1_1:10227249-10227268 Msa0007160:intron 25.0%
! CATTACAACCAAACATATAA+GGG - chr1_1:10227425-10227444 None:intergenic 25.0%
! TCATTACAACCAAACATATA+AGG - chr1_1:10227426-10227445 None:intergenic 25.0%
GCAAGAAAAGTTAAGAGTTT+AGG + chr1_1:10224432-10224451 Msa0007160:five_prime_UTR 30.0%
GAAAATAAATGGTTGGATTC+CGG - chr1_1:10224546-10224565 None:intergenic 30.0%
GATAAAGTGAAAGCAATAAG+CGG + chr1_1:10224762-10224781 Msa0007160:CDS 30.0%
AAAGTACATGTATGGTTGAT+TGG - chr1_1:10224872-10224891 None:intergenic 30.0%
! TATCTGAGTTCAGTTTTACT+CGG - chr1_1:10225287-10225306 None:intergenic 30.0%
GAACTCAGATATCTTAATCA+AGG + chr1_1:10225296-10225315 Msa0007160:intron 30.0%
AGTAAAGAGCTCATTAAAGA+TGG + chr1_1:10225359-10225378 Msa0007160:intron 30.0%
AAGAATGGATCATGCTAATA+TGG - chr1_1:10225688-10225707 None:intergenic 30.0%
ATATGTTATTCTAACTGACC+AGG - chr1_1:10225756-10225775 None:intergenic 30.0%
!! ATAATACTTCTCATTGGCTT+AGG - chr1_1:10226064-10226083 None:intergenic 30.0%
ACAAGAGTAAATCATGATCA+TGG - chr1_1:10226573-10226592 None:intergenic 30.0%
AGAACATTGAAGCTAGAATA+AGG + chr1_1:10226767-10226786 Msa0007160:intron 30.0%
ACAAACTTAGTTAAGTGTAC+CGG - chr1_1:10226856-10226875 None:intergenic 30.0%
!! TTATGAAGCTTGATGATGTA+TGG - chr1_1:10226944-10226963 None:intergenic 30.0%
TGCATTAGGTAAAAAAGACA+AGG - chr1_1:10227100-10227119 None:intergenic 30.0%
CACTAAATTTCGTTTGCATT+AGG - chr1_1:10227114-10227133 None:intergenic 30.0%
!! CACAAGTACAATAGTTCTAA+TGG + chr1_1:10227217-10227236 Msa0007160:intron 30.0%
TGATATTACTTCTTCCATTG+AGG - chr1_1:10227292-10227311 None:intergenic 30.0%
ATGCAAACTGTATAAAATCC+AGG - chr1_1:10227330-10227349 None:intergenic 30.0%
!! ATCCAACCATTTATTTTCCC+CGG + chr1_1:10224548-10224567 Msa0007160:CDS 35.0%
AAATAGAGCTGGAGTTCATT+GGG + chr1_1:10224629-10224648 Msa0007160:CDS 35.0%
ATTGCTTTCACTTTATCCAC+CGG - chr1_1:10224759-10224778 None:intergenic 35.0%
TGGTATGATACATACATACG+TGG - chr1_1:10224838-10224857 None:intergenic 35.0%
GTTGATTGGAATTAAGCATG+TGG - chr1_1:10224858-10224877 None:intergenic 35.0%
GTGGATGAGAAAATGTGATT+GGG + chr1_1:10225336-10225355 Msa0007160:intron 35.0%
GGATCATGCTAATATGGTAA+TGG - chr1_1:10225682-10225701 None:intergenic 35.0%
AGGTTAAACGAGCTAAAGAA+CGG - chr1_1:10226234-10226253 None:intergenic 35.0%
! AATGTCCCTTTTATAGTGTG+AGG + chr1_1:10226292-10226311 Msa0007160:intron 35.0%
! ATGTCCCTTTTATAGTGTGA+GGG + chr1_1:10226293-10226312 Msa0007160:intron 35.0%
ATCACCCTCACACTATAAAA+GGG - chr1_1:10226300-10226319 None:intergenic 35.0%
TATCACCCTCACACTATAAA+AGG - chr1_1:10226301-10226320 None:intergenic 35.0%
GTAAACAGAAACCTGAATCT+TGG + chr1_1:10226367-10226386 Msa0007160:intron 35.0%
!! TTGGCTTGTCAAACTATTGT+TGG + chr1_1:10226393-10226412 Msa0007160:CDS 35.0%
! TGGCTTGTCAAACTATTGTT+GGG + chr1_1:10226394-10226413 Msa0007160:CDS 35.0%
GCTATATCTCATGTTTAGTG+TGG + chr1_1:10226499-10226518 Msa0007160:intron 35.0%
CATGTTTAGTGTGGAAAATG+TGG + chr1_1:10226508-10226527 Msa0007160:intron 35.0%
CTCACATTACTTGAGAATTG+AGG + chr1_1:10226611-10226630 Msa0007160:intron 35.0%
TCTCAATGAGTAATGAGTTG+AGG - chr1_1:10226658-10226677 None:intergenic 35.0%
GGCTTACACAATACTCAATA+CGG + chr1_1:10226706-10226725 Msa0007160:intron 35.0%
!! TCTAAGACACCACTTTTCAA+AGG - chr1_1:10226738-10226757 None:intergenic 35.0%
AAAGTGGTGTCTTAGATTTG+AGG + chr1_1:10226742-10226761 Msa0007160:intron 35.0%
TGCAAACGAAATTTAGTGAC+TGG + chr1_1:10227116-10227135 Msa0007160:intron 35.0%
GCAAACGAAATTTAGTGACT+GGG + chr1_1:10227117-10227136 Msa0007160:intron 35.0%
CAAACGAAATTTAGTGACTG+GGG + chr1_1:10227118-10227137 Msa0007160:intron 35.0%
!!! GCTTTTAGGTTGTTGTTCAA+AGG + chr1_1:10227263-10227282 Msa0007160:intron 35.0%
TTGTTCAAAGGATTCCTCAA+TGG + chr1_1:10227275-10227294 Msa0007160:CDS 35.0%
AAAATCCAGGATATGCTACT+TGG - chr1_1:10227317-10227336 None:intergenic 35.0%
TGGTTGTAATGATTGTCACT+TGG + chr1_1:10227434-10227453 Msa0007160:three_prime_UTR 35.0%
!! TTTGGCTCTTGAATTGGATT+TGG - chr1_1:10227518-10227537 None:intergenic 35.0%
!!! CTCTATTTTGGCTCTTGAAT+TGG - chr1_1:10227524-10227543 None:intergenic 35.0%
TCCAAGTGAAGTCAGTTAAC+TGG - chr1_1:10224409-10224428 None:intergenic 40.0%
ATGAACTCCAGCTCTATTTC+CGG - chr1_1:10224628-10224647 None:intergenic 40.0%
GAAATAGAGCTGGAGTTCAT+TGG + chr1_1:10224628-10224647 Msa0007160:CDS 40.0%
AATAGAGCTGGAGTTCATTG+GGG + chr1_1:10224630-10224649 Msa0007160:CDS 40.0%
CTTAAGAGATTAATCGCGAG+TGG - chr1_1:10224973-10224992 None:intergenic 40.0%
CGTGGATGAGAAAATGTGAT+TGG + chr1_1:10225335-10225354 Msa0007160:intron 40.0%
! TCTACAAAAACGGACCCTTT+TGG - chr1_1:10225490-10225509 None:intergenic 40.0%
TCAGGATGAATATGTTCTCC+TGG + chr1_1:10225735-10225754 Msa0007160:intron 40.0%
GTTCTGTTGCAGATCATTGA+AGG + chr1_1:10225875-10225894 Msa0007160:intron 40.0%
GTTGCAGATCATTGAAGGAA+AGG + chr1_1:10225880-10225899 Msa0007160:intron 40.0%
AACAGAAACCTGAATCTTGG+AGG + chr1_1:10226370-10226389 Msa0007160:intron 40.0%
GTTGGGAACAAAGAAAACTC+TGG + chr1_1:10226411-10226430 Msa0007160:CDS 40.0%
GAACAAAGAAAACTCTGGCA+AGG + chr1_1:10226416-10226435 Msa0007160:CDS 40.0%
! CGGACAATACCTTTGAAAAG+TGG + chr1_1:10226726-10226745 Msa0007160:intron 40.0%
! TTTTAGCCCCATAGCCTAAA+GGG + chr1_1:10226820-10226839 Msa0007160:intron 40.0%
! TAACTAAGTTTGTTCCCGTG+CGG + chr1_1:10226863-10226882 Msa0007160:intron 40.0%
! CACTTGGTGACTATTCTTGA+CGG + chr1_1:10227450-10227469 Msa0007160:three_prime_UTR 40.0%
! GCCAGTTAACTGACTTCACT+TGG + chr1_1:10224405-10224424 Msa0007160:five_prime_UTR 45.0%
TAGGAACACACACACAACAG+AGG + chr1_1:10224451-10224470 Msa0007160:five_prime_UTR 45.0%
AGGAACACACACACAACAGA+GGG + chr1_1:10224452-10224471 Msa0007160:five_prime_UTR 45.0%
AATGGTTGGATTCCGGTTAC+CGG - chr1_1:10224539-10224558 None:intergenic 45.0%
!! CAACCATTTATTTTCCCCGG+CGG + chr1_1:10224551-10224570 Msa0007160:CDS 45.0%
! ACCGAACTCAGTTTGTTTCG+TGG + chr1_1:10224576-10224595 Msa0007160:CDS 45.0%
GCCACGAAACAAACTGAGTT+CGG - chr1_1:10224580-10224599 None:intergenic 45.0%
TTGATTGCAGCCAAAACCAG+AGG + chr1_1:10224719-10224738 Msa0007160:intron 45.0%
TGATTGCAGCCAAAACCAGA+GGG + chr1_1:10224720-10224739 Msa0007160:intron 45.0%
GGTCTCATATTAGAGTCTCG+TGG + chr1_1:10225317-10225336 Msa0007160:intron 45.0%
!! CAGGGAAAGTTGATGAACTG+CGG + chr1_1:10225599-10225618 Msa0007160:intron 45.0%
GAAACCTGAATCTTGGAGGT+TGG + chr1_1:10226374-10226393 Msa0007160:intron 45.0%
AGTGTGGAAAATGTGGTGCT+AGG + chr1_1:10226515-10226534 Msa0007160:intron 45.0%
! GAGTAATGAGTTGAGGAGAG+TGG - chr1_1:10226651-10226670 None:intergenic 45.0%
CTTTAGGCTATGGGGCTAAA+AGG - chr1_1:10226821-10226840 None:intergenic 45.0%
! CTTTTAGCCCCATAGCCTAA+AGG + chr1_1:10226819-10226838 Msa0007160:intron 45.0%
TTTAGCCCCATAGCCTAAAG+GGG + chr1_1:10226821-10226840 Msa0007160:intron 45.0%
AGTAGTCCCCTTTAGGCTAT+GGG - chr1_1:10226830-10226849 None:intergenic 45.0%
TCAAGCCAAGTAGCATATCC+TGG + chr1_1:10227309-10227328 Msa0007160:CDS 45.0%
! GCTTTGCGCATGCTCTATTT+TGG - chr1_1:10227536-10227555 None:intergenic 45.0%
!!! AATTATTTCTTAAATAAATT+CGG + chr1_1:10224938-10224957 Msa0007160:intron 5.0%
GCGCGAAGCAGAAAAGGAAA+TGG + chr1_1:10224474-10224493 Msa0007160:exon 50.0%
CGCCGGGGAAAATAAATGGT+TGG - chr1_1:10224553-10224572 None:intergenic 50.0%
AGCTCTATTTCCGGAGGAGA+AGG - chr1_1:10224619-10224638 None:intergenic 50.0%
TTCTCCTCCGGAAATAGAGC+TGG + chr1_1:10224618-10224637 Msa0007160:CDS 50.0%
AACTCCAGCTCTATTTCCGG+AGG - chr1_1:10224625-10224644 None:intergenic 50.0%
AGCCAAAACCAGAGGGTGAT+GGG + chr1_1:10224727-10224746 Msa0007160:intron 50.0%
TAAGCGGAGAGAAGCTGATG+AGG + chr1_1:10224778-10224797 Msa0007160:CDS 50.0%
!! GCTGATGAGGAGCATCATGT+CGG + chr1_1:10224791-10224810 Msa0007160:CDS 50.0%
!! GGAAAGTTGATGAACTGCGG+CGG + chr1_1:10225602-10225621 Msa0007160:CDS 50.0%
CAAGCCAACCTCCAAGATTC+AGG - chr1_1:10226381-10226400 None:intergenic 50.0%
AGGACATACGCCAAATGCGA+TGG + chr1_1:10226787-10226806 Msa0007160:intron 50.0%
CGCCAAATGCGATGGTTGAT+AGG + chr1_1:10226795-10226814 Msa0007160:intron 50.0%
GGCCTATCAACCATCGCATT+TGG - chr1_1:10226800-10226819 None:intergenic 50.0%
GTAGTCCCCTTTAGGCTATG+GGG - chr1_1:10226829-10226848 None:intergenic 50.0%
CAGTAGTCCCCTTTAGGCTA+TGG - chr1_1:10226831-10226850 None:intergenic 50.0%
CCTAAAGGGGACTACTGTTC+CGG + chr1_1:10226834-10226853 Msa0007160:intron 50.0%
TCGCCGCCGGGGAAAATAAA+TGG - chr1_1:10224557-10224576 None:intergenic 55.0%
GCCTGAATCTCCTTCTCCTC+CGG + chr1_1:10224606-10224625 Msa0007160:CDS 55.0%
TCCGGAGGAGAAGGAGATTC+AGG - chr1_1:10224610-10224629 None:intergenic 55.0%
CAGCCAAAACCAGAGGGTGA+TGG + chr1_1:10224726-10224745 Msa0007160:intron 55.0%
!! GACCCATCACCCTCTGGTTT+TGG - chr1_1:10224732-10224751 None:intergenic 55.0%
!! AGAGGGTGATGGGTCGTTTC+CGG + chr1_1:10224737-10224756 Msa0007160:CDS 55.0%
!! AAGTTGATGAACTGCGGCGG+AGG + chr1_1:10225605-10225624 Msa0007160:CDS 55.0%
!! AGTTGATGAACTGCGGCGGA+GGG + chr1_1:10225606-10225625 Msa0007160:CDS 55.0%
CTGCGGAACTTGCATAGTCG+AGG + chr1_1:10225634-10225653 Msa0007160:CDS 55.0%
CCGGAACAGTAGTCCCCTTT+AGG - chr1_1:10226837-10226856 None:intergenic 55.0%
! TAAGTTTGTTCCCGTGCGGC+AGG + chr1_1:10226867-10226886 Msa0007160:intron 55.0%
TAGAACTCAAGCCTGCCGCA+CGG - chr1_1:10226881-10226900 None:intergenic 55.0%
! CAGAGGGCGCGAAGCAGAAA+AGG + chr1_1:10224468-10224487 Msa0007160:five_prime_UTR 60.0%
ACACCAGTTCCACTCACCGC+CGG + chr1_1:10224517-10224536 Msa0007160:CDS 60.0%
TTACCGGCGGTGAGTGGAAC+TGG - chr1_1:10224523-10224542 None:intergenic 60.0%
TTCCACTCACCGCCGGTAAC+CGG + chr1_1:10224524-10224543 Msa0007160:CDS 60.0%
GGTTGGATTCCGGTTACCGG+CGG - chr1_1:10224536-10224555 None:intergenic 60.0%
AAACTGAGTTCGGTCGCCGC+CGG - chr1_1:10224570-10224589 None:intergenic 60.0%
GGAAACGACCCATCACCCTC+TGG - chr1_1:10224738-10224757 None:intergenic 60.0%
! GTTGATGAACTGCGGCGGAG+GGG + chr1_1:10225607-10225626 Msa0007160:CDS 60.0%
TTGATGAACTGCGGCGGAGG+GGG + chr1_1:10225608-10225627 Msa0007160:CDS 60.0%
AGAACTCAAGCCTGCCGCAC+GGG - chr1_1:10226880-10226899 None:intergenic 60.0%
TTCCGGTTACCGGCGGTGAG+TGG - chr1_1:10224529-10224548 None:intergenic 65.0%
AACTGAGTTCGGTCGCCGCC+GGG - chr1_1:10224569-10224588 None:intergenic 65.0%
!! GGGTGATGGGTCGTTTCCGG+TGG + chr1_1:10224740-10224759 Msa0007160:CDS 65.0%
ACTGAGTTCGGTCGCCGCCG+GGG - chr1_1:10224568-10224587 None:intergenic 70.0%
TGCGGCGGAGGGGGTAGCTG+CGG + chr1_1:10225617-10225636 Msa0007160:CDS 75.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 10224362 10227630 10224362 ID=Msa0007160;Name=Msa0007160
chr1_1 mRNA 10224362 10227630 10224362 ID=Msa0007160-mRNA-1;Parent=Msa0007160;Name=Msa0007160-mRNA-1;_AED=0.14;_eAED=0.14;_QI=131|0.8|0.83|1|0.6|0.83|6|275|186
chr1_1 exon 10224362 10224651 10224362 ID=Msa0007160-mRNA-1:exon:3738;Parent=Msa0007160-mRNA-1
chr1_1 exon 10224729 10224842 10224729 ID=Msa0007160-mRNA-1:exon:3739;Parent=Msa0007160-mRNA-1
chr1_1 exon 10225602 10225655 10225602 ID=Msa0007160-mRNA-1:exon:3740;Parent=Msa0007160-mRNA-1
chr1_1 exon 10225887 10225972 10225887 ID=Msa0007160-mRNA-1:exon:3741;Parent=Msa0007160-mRNA-1
chr1_1 exon 10226375 10226437 10226375 ID=Msa0007160-mRNA-1:exon:3742;Parent=Msa0007160-mRNA-1
chr1_1 exon 10227271 10227630 10227271 ID=Msa0007160-mRNA-1:exon:3743;Parent=Msa0007160-mRNA-1
chr1_1 five_prime_UTR 10224362 10224492 10224362 ID=Msa0007160-mRNA-1:five_prime_utr;Parent=Msa0007160-mRNA-1
chr1_1 CDS 10224493 10224651 10224493 ID=Msa0007160-mRNA-1:cds;Parent=Msa0007160-mRNA-1
chr1_1 CDS 10224729 10224842 10224729 ID=Msa0007160-mRNA-1:cds;Parent=Msa0007160-mRNA-1
chr1_1 CDS 10225602 10225655 10225602 ID=Msa0007160-mRNA-1:cds;Parent=Msa0007160-mRNA-1
chr1_1 CDS 10225887 10225972 10225887 ID=Msa0007160-mRNA-1:cds;Parent=Msa0007160-mRNA-1
chr1_1 CDS 10226375 10226437 10226375 ID=Msa0007160-mRNA-1:cds;Parent=Msa0007160-mRNA-1
chr1_1 CDS 10227271 10227355 10227271 ID=Msa0007160-mRNA-1:cds;Parent=Msa0007160-mRNA-1
chr1_1 three_prime_UTR 10227356 10227630 10227356 ID=Msa0007160-mRNA-1:three_prime_utr;Parent=Msa0007160-mRNA-1
Gene Sequence

>Msa0007160

ATGGCTTCTATGAACAATATATTCACACCAGTTCCACTCACCGCCGGTAACCGGAATCCAACCATTTATTTTCCCCGGCGGCGACCGAACTCAGTTTGTTTCGTGGCAAATTCGCCTGAATCTCCTTCTCCTCCGGAAATAGAGCTGGAGTTCATTGGGCCAAAACCAGAGGGTGATGGGTCGTTTCCGGTGGATAAAGTGAAAGCAATAAGCGGAGAGAAGCTGATGAGGAGCATCATGTCGGATAACAAGATTGAGCTTTATGCCACGTATGGAAAGTTGATGAACTGCGGCGGAGGGGGTAGCTGCGGAACTTGCATAGTCGAGATCATTGAAGGAAAGGATCTTTTAAATGAAAGAACAAATACTGAACTAAAATATCTTAAGAAGGCATGTTCTCTGTCTCTCTCTTTAAACCTGAATCTTGGAGGTTGGCTTGTCAAACTATTGTTGGGAACAAAGAAAACTCTGGCAAGGTTGTTGTTCAAAGGATTCCTCAATGGAAGAAGTAATATCAAGCCAAGTAGCATATCCTGGATTTTATACAGTTTGCATCACTAG

Protein sequence

>Msa0007160

MASMNNIFTPVPLTAGNRNPTIYFPRRRPNSVCFVANSPESPSPPEIELEFIGPKPEGDGSFPVDKVKAISGEKLMRSIMSDNKIELYATYGKLMNCGGGGSCGTCIVEIIEGKDLLNERTNTELKYLKKACSLSLSLNLNLGGWLVKLLLGTKKTLARLLFKGFLNGRSNIKPSSISWILYSLHH*