Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0575770 | XP_003631113.1 | 94.040 | 302 | 18 | 0 | 9 | 310 | 16 | 317 | 0.0 | 595 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0575770 | sp|Q8LB08|ADT4_ARATH | 75.839 | 298 | 72 | 0 | 3 | 300 | 6 | 303 | 2.76e-163 | 459 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0575770 | G7LE57 | 94.040 | 302 | 18 | 0 | 9 | 310 | 16 | 317 | 0.0 | 595 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0005690 | Msa0575770 | 0.800400 | 1.467202e-48 | -8.615850e-47 |
| Msa0017420 | Msa0575770 | 0.823777 | 1.153966e-53 | -8.615850e-47 |
| Msa0070090 | Msa0575770 | 0.803303 | 3.718640e-49 | -8.615850e-47 |
| Msa0070740 | Msa0575770 | 0.801153 | 1.029920e-48 | -8.615850e-47 |
| Msa0436900 | Msa0575770 | 0.804561 | 2.036671e-49 | -8.615850e-47 |
| Msa0563140 | Msa0575770 | 0.827717 | 1.340820e-54 | -8.615850e-47 |
| Msa0571250 | Msa0575770 | 0.831426 | 1.680507e-55 | -8.615850e-47 |
| Msa0575770 | Msa0575890 | 0.805127 | 1.550904e-49 | -8.615850e-47 |
| Msa0575770 | Msa1130650 | 0.811873 | 5.629807e-51 | -8.615850e-47 |
| Msa0575770 | Msa1161520 | 0.811773 | 5.920060e-51 | -8.615850e-47 |
| Msa0575770 | Msa1182400 | 0.805228 | 1.477383e-49 | -8.615850e-47 |
| Msa0575770 | Msa1244300 | 0.806912 | 6.532909e-50 | -8.615850e-47 |
| Msa0575770 | Msa1303640 | 0.800914 | 1.152328e-48 | -8.615850e-47 |
| Msa0575770 | Msa1431240 | 0.803897 | 2.799699e-49 | -8.615850e-47 |
| Msa0575770 | Msa1432250 | 0.801407 | 9.135754e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0575770 | MtrunA17_Chr8g0393031 | 94.040 | 302 | 18 | 0 | 9 | 310 | 16 | 317 | 0.0 | 595 |
| Msa0575770 | MtrunA17_Chr4g0040341 | 59.233 | 287 | 117 | 0 | 10 | 296 | 74 | 360 | 3.28e-124 | 360 |
| Msa0575770 | MtrunA17_Chr3g0088301 | 58.681 | 288 | 119 | 0 | 7 | 294 | 89 | 376 | 2.74e-122 | 356 |
| Msa0575770 | MtrunA17_Chr8g0352031 | 58.904 | 292 | 119 | 1 | 6 | 296 | 63 | 354 | 1.27e-119 | 348 |
| Msa0575770 | MtrunA17_Chr2g0328891 | 59.170 | 289 | 118 | 0 | 6 | 294 | 61 | 349 | 4.54e-117 | 342 |
| Msa0575770 | MtrunA17_Chr3g0135801 | 36.054 | 294 | 181 | 5 | 6 | 295 | 29 | 319 | 3.40e-60 | 195 |
| Msa0575770 | MtrunA17_Chr8g0347451 | 29.392 | 296 | 174 | 9 | 6 | 276 | 46 | 331 | 7.45e-32 | 121 |
| Msa0575770 | MtrunA17_Chr5g0396801 | 29.373 | 303 | 163 | 10 | 6 | 276 | 33 | 316 | 9.68e-32 | 121 |
| Msa0575770 | MtrunA17_Chr5g0396801 | 25.616 | 203 | 134 | 4 | 14 | 205 | 144 | 340 | 8.11e-12 | 65.1 |
| Msa0575770 | MtrunA17_Chr3g0135861 | 32.881 | 295 | 155 | 12 | 7 | 276 | 31 | 307 | 1.89e-31 | 120 |
| Msa0575770 | MtrunA17_Chr4g0006851 | 29.242 | 277 | 175 | 8 | 22 | 296 | 100 | 357 | 8.04e-30 | 116 |
| Msa0575770 | MtrunA17_Chr6g0488081 | 27.129 | 317 | 191 | 11 | 7 | 301 | 15 | 313 | 8.68e-28 | 109 |
| Msa0575770 | MtrunA17_Chr8g0385571 | 27.562 | 283 | 185 | 6 | 8 | 286 | 224 | 490 | 6.18e-27 | 110 |
| Msa0575770 | MtrunA17_Chr7g0242311 | 28.520 | 277 | 177 | 9 | 22 | 296 | 98 | 355 | 1.86e-26 | 107 |
| Msa0575770 | MtrunA17_Chr7g0240341 | 27.687 | 307 | 197 | 9 | 10 | 302 | 24 | 319 | 2.11e-26 | 106 |
| Msa0575770 | MtrunA17_Chr1g0149111 | 27.152 | 302 | 190 | 11 | 2 | 296 | 131 | 409 | 4.96e-24 | 101 |
| Msa0575770 | MtrunA17_Chr1g0149111 | 28.079 | 203 | 123 | 6 | 6 | 204 | 228 | 411 | 1.01e-15 | 77.4 |
| Msa0575770 | MtrunA17_Chr3g0131501 | 26.042 | 288 | 193 | 6 | 3 | 286 | 197 | 468 | 5.24e-24 | 101 |
| Msa0575770 | MtrunA17_Chr3g0137941 | 27.240 | 279 | 175 | 9 | 14 | 286 | 125 | 381 | 7.00e-24 | 100 |
| Msa0575770 | MtrunA17_Chr3g0137941 | 27.670 | 206 | 120 | 6 | 6 | 204 | 211 | 394 | 2.08e-15 | 76.3 |
| Msa0575770 | MtrunA17_Chr7g0252401 | 27.046 | 281 | 180 | 7 | 11 | 286 | 207 | 467 | 1.41e-23 | 100 |
| Msa0575770 | MtrunA17_Chr8g0382201 | 28.387 | 310 | 164 | 10 | 6 | 286 | 190 | 470 | 1.02e-21 | 95.1 |
| Msa0575770 | MtrunA17_Chr3g0115801 | 27.393 | 303 | 172 | 9 | 8 | 286 | 113 | 391 | 4.93e-21 | 92.4 |
| Msa0575770 | MtrunA17_Chr4g0063561 | 24.915 | 293 | 195 | 10 | 9 | 296 | 121 | 393 | 9.15e-20 | 89.0 |
| Msa0575770 | MtrunA17_Chr2g0296061 | 23.453 | 307 | 200 | 7 | 14 | 291 | 18 | 318 | 1.17e-19 | 87.8 |
| Msa0575770 | MtrunA17_Chr5g0436041 | 25.614 | 285 | 196 | 6 | 10 | 286 | 33 | 309 | 3.10e-19 | 86.7 |
| Msa0575770 | MtrunA17_Chr4g0067231 | 22.256 | 328 | 215 | 7 | 1 | 294 | 1 | 322 | 5.56e-18 | 83.2 |
| Msa0575770 | MtrunA17_Chr7g0269701 | 23.469 | 294 | 209 | 10 | 14 | 300 | 25 | 309 | 1.25e-15 | 76.3 |
| Msa0575770 | MtrunA17_Chr4g0000261 | 21.333 | 300 | 192 | 5 | 9 | 286 | 64 | 341 | 1.51e-13 | 70.5 |
| Msa0575770 | MtrunA17_Chr4g0028531 | 23.051 | 295 | 196 | 11 | 12 | 293 | 23 | 299 | 5.65e-13 | 68.6 |
| Msa0575770 | MtrunA17_Chr5g0411411 | 24.211 | 285 | 187 | 8 | 8 | 277 | 6 | 276 | 1.84e-11 | 63.9 |
| Msa0575770 | MtrunA17_Chr1g0201361 | 22.295 | 305 | 188 | 9 | 12 | 308 | 52 | 315 | 2.46e-11 | 63.5 |
| Msa0575770 | MtrunA17_Chr5g0412401 | 21.502 | 293 | 198 | 6 | 9 | 272 | 4 | 293 | 3.54e-11 | 63.2 |
| Msa0575770 | MtrunA17_Chr7g0241521 | 20.803 | 274 | 206 | 6 | 6 | 276 | 12 | 277 | 4.96e-11 | 62.4 |
| Msa0575770 | MtrunA17_Chr3g0103681 | 21.575 | 292 | 183 | 6 | 6 | 276 | 10 | 276 | 5.17e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0575770 | AT5G17400.1 | 75.839 | 298 | 72 | 0 | 3 | 300 | 6 | 303 | 2.80e-164 | 459 |
| Msa0575770 | AT4G28390.1 | 60.000 | 290 | 116 | 0 | 7 | 296 | 79 | 368 | 1.40e-123 | 359 |
| Msa0575770 | AT4G28390.2 | 60.000 | 290 | 116 | 0 | 7 | 296 | 79 | 368 | 1.40e-123 | 359 |
| Msa0575770 | AT5G13490.1 | 58.219 | 292 | 121 | 1 | 6 | 296 | 83 | 374 | 5.67e-119 | 347 |
| Msa0575770 | AT5G13490.2 | 58.219 | 292 | 121 | 1 | 6 | 296 | 83 | 374 | 5.67e-119 | 347 |
| Msa0575770 | AT3G08580.2 | 57.192 | 292 | 124 | 1 | 6 | 296 | 79 | 370 | 7.99e-117 | 342 |
| Msa0575770 | AT3G08580.1 | 57.192 | 292 | 124 | 1 | 6 | 296 | 79 | 370 | 7.99e-117 | 342 |
| Msa0575770 | AT5G56450.1 | 37.667 | 300 | 170 | 8 | 7 | 295 | 30 | 323 | 1.49e-58 | 191 |
| Msa0575770 | AT2G37890.1 | 29.966 | 297 | 191 | 7 | 9 | 296 | 43 | 331 | 3.33e-33 | 125 |
| Msa0575770 | AT4G26180.2 | 31.469 | 286 | 169 | 9 | 7 | 278 | 17 | 289 | 3.37e-33 | 124 |
| Msa0575770 | AT4G26180.1 | 31.469 | 286 | 169 | 9 | 7 | 278 | 17 | 289 | 8.62e-33 | 124 |
| Msa0575770 | AT4G01100.1 | 29.412 | 306 | 163 | 8 | 5 | 276 | 36 | 322 | 1.21e-30 | 118 |
| Msa0575770 | AT1G14560.2 | 33.574 | 277 | 146 | 13 | 22 | 276 | 38 | 298 | 3.80e-29 | 114 |
| Msa0575770 | AT5G01500.1 | 29.603 | 277 | 174 | 10 | 22 | 296 | 130 | 387 | 3.90e-29 | 115 |
| Msa0575770 | AT3G51870.1 | 27.517 | 298 | 186 | 9 | 22 | 307 | 102 | 381 | 5.67e-29 | 114 |
| Msa0575770 | AT1G14560.1 | 33.574 | 277 | 146 | 13 | 22 | 276 | 38 | 298 | 7.18e-29 | 113 |
| Msa0575770 | AT4G01100.2 | 30.063 | 316 | 162 | 10 | 5 | 276 | 36 | 336 | 1.85e-28 | 113 |
| Msa0575770 | AT4G01100.3 | 29.210 | 291 | 153 | 8 | 20 | 276 | 1 | 272 | 4.11e-28 | 110 |
| Msa0575770 | AT3G53940.1 | 27.687 | 307 | 197 | 8 | 9 | 302 | 71 | 365 | 6.15e-28 | 111 |
| Msa0575770 | AT3G53940.1 | 25.366 | 205 | 135 | 4 | 6 | 207 | 175 | 364 | 5.49e-11 | 63.2 |
| Msa0575770 | AT3G55640.1 | 27.397 | 292 | 186 | 9 | 8 | 286 | 35 | 313 | 1.71e-27 | 109 |
| Msa0575770 | AT3G55640.4 | 27.397 | 292 | 186 | 9 | 8 | 286 | 35 | 313 | 1.71e-27 | 109 |
| Msa0575770 | AT3G21390.1 | 25.714 | 315 | 193 | 7 | 10 | 291 | 18 | 324 | 7.46e-24 | 100 |
| Msa0575770 | AT3G21390.2 | 25.879 | 313 | 195 | 6 | 10 | 291 | 40 | 346 | 8.79e-24 | 100 |
| Msa0575770 | AT5G61810.2 | 28.571 | 273 | 167 | 7 | 8 | 276 | 62 | 310 | 1.03e-23 | 99.8 |
| Msa0575770 | AT5G61810.1 | 27.915 | 283 | 176 | 7 | 8 | 286 | 205 | 463 | 2.54e-23 | 100 |
| Msa0575770 | AT5G07320.1 | 26.740 | 273 | 168 | 8 | 20 | 286 | 218 | 464 | 6.76e-23 | 99.0 |
| Msa0575770 | AT5G51050.1 | 26.071 | 280 | 184 | 5 | 11 | 286 | 223 | 483 | 9.12e-23 | 98.6 |
| Msa0575770 | AT3G55640.2 | 29.208 | 202 | 121 | 6 | 8 | 200 | 35 | 223 | 1.86e-22 | 94.7 |
| Msa0575770 | AT3G55640.3 | 29.208 | 202 | 121 | 6 | 8 | 200 | 35 | 223 | 1.86e-22 | 94.7 |
| Msa0575770 | AT5G64970.1 | 28.146 | 302 | 171 | 10 | 8 | 286 | 132 | 410 | 9.07e-21 | 92.4 |
| Msa0575770 | AT5G64970.3 | 28.571 | 294 | 164 | 10 | 8 | 278 | 132 | 402 | 1.79e-20 | 91.3 |
| Msa0575770 | AT5G48970.1 | 24.924 | 329 | 195 | 11 | 10 | 297 | 21 | 338 | 2.69e-19 | 87.4 |
| Msa0575770 | AT3G53940.2 | 28.500 | 200 | 123 | 4 | 9 | 200 | 71 | 258 | 2.72e-19 | 86.7 |
| Msa0575770 | AT5G64970.2 | 28.053 | 303 | 171 | 11 | 8 | 286 | 7 | 286 | 3.44e-19 | 86.7 |
| Msa0575770 | AT3G20240.1 | 22.330 | 309 | 180 | 7 | 8 | 286 | 49 | 327 | 3.65e-19 | 87.0 |
| Msa0575770 | AT4G32400.1 | 25.347 | 288 | 179 | 10 | 9 | 286 | 112 | 373 | 1.21e-18 | 85.9 |
| Msa0575770 | AT1G78180.1 | 28.620 | 297 | 164 | 11 | 14 | 286 | 131 | 403 | 2.01e-16 | 79.7 |
| Msa0575770 | AT1G14560.3 | 32.418 | 182 | 102 | 7 | 115 | 278 | 24 | 202 | 1.73e-15 | 74.7 |
| Msa0575770 | AT3G54110.1 | 24.643 | 280 | 188 | 9 | 6 | 276 | 10 | 275 | 1.05e-14 | 73.9 |
| Msa0575770 | AT5G48970.2 | 24.265 | 272 | 163 | 8 | 59 | 297 | 6 | 267 | 4.24e-14 | 71.6 |
| Msa0575770 | AT5G58970.1 | 22.517 | 302 | 224 | 7 | 6 | 304 | 11 | 305 | 1.40e-13 | 70.5 |
| Msa0575770 | AT5G66380.1 | 27.368 | 190 | 132 | 4 | 111 | 296 | 5 | 192 | 1.15e-12 | 67.8 |
| Msa0575770 | AT5G01340.1 | 26.738 | 187 | 124 | 3 | 15 | 197 | 116 | 293 | 4.80e-12 | 65.9 |
| Msa0575770 | AT1G79900.1 | 25.664 | 226 | 142 | 6 | 56 | 273 | 51 | 258 | 2.24e-11 | 63.9 |
| Msa0575770 | AT1G34065.2 | 22.295 | 305 | 185 | 9 | 9 | 302 | 73 | 336 | 7.88e-11 | 62.8 |
| Msa0575770 | AT1G34065.1 | 22.295 | 305 | 185 | 9 | 9 | 302 | 80 | 343 | 8.43e-11 | 62.4 |
Find 108 sgRNAs with CRISPR-Local
Find 201 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCGGGAGCTGGGGTGCTTGC+TGG | 0.170497 | 4_1:-79706079 | Msa0575770:CDS |
| TTGCATTATAATACTTATTC+TGG | 0.231839 | 4_1:+79706185 | None:intergenic |
| GGGATTCGGTGTTTCAATAT+TGG | 0.231853 | 4_1:-79706791 | Msa0575770:CDS |
| AAGAGGGTCTCCTTGCCTTT+TGG | 0.234640 | 4_1:-79707583 | Msa0575770:CDS |
| ACATACACCAAACAAATTTA+TGG | 0.240427 | 4_1:-79705858 | Msa0575770:three_prime_UTR |
| GGTTACTTCAAAAGCATCTT+TGG | 0.242168 | 4_1:-79707042 | Msa0575770:CDS |
| AGAAATTAGAATGGGTATTA+TGG | 0.243847 | 4_1:-79705913 | Msa0575770:three_prime_UTR |
| CTTCTAGGGATGGCGGGAGC+TGG | 0.249873 | 4_1:-79706091 | Msa0575770:CDS |
| GGCTCTTCATTTGAAAAGTT+TGG | 0.256137 | 4_1:-79705892 | Msa0575770:three_prime_UTR |
| AATTGGTGCCACTGCAGTTT+TGG | 0.258307 | 4_1:+79707712 | None:intergenic |
| GTGAATAATTCATTCGATTC+AGG | 0.269599 | 4_1:-79707941 | Msa0575770:intron |
| ACTGGTCACCGTCAGTTTAA+AGG | 0.285006 | 4_1:-79706871 | Msa0575770:CDS |
| TCATTTATTTCATGACTCTT+TGG | 0.289721 | 4_1:+79706002 | None:intergenic |
| TTCTTTGCTAGTTTCTTGTT+AGG | 0.299649 | 4_1:-79706289 | Msa0575770:CDS |
| TTCTAGGGATGGCGGGAGCT+GGG | 0.318989 | 4_1:-79706090 | Msa0575770:CDS |
| GGATTCGGTGTTTCAATATT+GGG | 0.326349 | 4_1:-79706790 | Msa0575770:CDS |
| GTCACTGCAAACATGCTTCT+AGG | 0.326966 | 4_1:-79706106 | Msa0575770:CDS |
| TGTATCGTTCTTATTTGTTT+CGG | 0.330486 | 4_1:+79708059 | None:intergenic |
| CCCTTAGGTGTGTATCAATA+AGG | 0.347535 | 4_1:+79705725 | None:intergenic |
| TTGCTAGTTTCTTGTTAGGT+TGG | 0.348330 | 4_1:-79706285 | Msa0575770:CDS |
| TGCAGTTAACTTGTCTGTTC+CGG | 0.350310 | 4_1:-79705674 | Msa0575770:three_prime_UTR |
| AACTAAAACAATAGGCTTCA+TGG | 0.352724 | 4_1:+79706726 | None:intergenic |
| GAGTTTCCTCTAAAAGTATC+TGG | 0.364389 | 4_1:+79705408 | None:intergenic |
| GGGTACATCAAGTGGTTTGC+TGG | 0.371317 | 4_1:-79707000 | Msa0575770:CDS |
| AAAAGCTTCACTCTTTCAAT+TGG | 0.371863 | 4_1:+79707695 | None:intergenic |
| AAGAATTTGCTATTAACAAA+AGG | 0.373856 | 4_1:+79705753 | None:intergenic |
| TGATATTGTACTCTATTGTC+TGG | 0.380378 | 4_1:-79705444 | Msa0575770:three_prime_UTR |
| TTTGCTGGGAACGTGGCTTC+AGG | 0.391111 | 4_1:-79706985 | Msa0575770:CDS |
| TGGAGCATCACAACTGTATC+TGG | 0.393342 | 4_1:-79706265 | Msa0575770:CDS |
| AAAAGGGAGAATGAAATCTA+AGG | 0.395235 | 4_1:+79705770 | None:intergenic |
| ATTAGCGGGAAGAAGAAATA+TGG | 0.399007 | 4_1:-79707792 | Msa0575770:exon |
| CGGGAGCTGGGGTGCTTGCT+GGG | 0.401594 | 4_1:-79706078 | Msa0575770:CDS |
| AAAGGTCCAACTAAAACAAT+AGG | 0.409592 | 4_1:+79706718 | None:intergenic |
| GGACTTTGCACGTACAAGAT+TGG | 0.415555 | 4_1:-79706920 | Msa0575770:CDS |
| GTCATATCCATAAATTTGTT+TGG | 0.420781 | 4_1:+79705851 | None:intergenic |
| ATGGTGTTGCTGGCTTGTAC+AGG | 0.427812 | 4_1:-79706813 | Msa0575770:CDS |
| ATATCAAGTGATGGTGTTGC+TGG | 0.431324 | 4_1:-79706823 | Msa0575770:CDS |
| TGTATCGAGGAATGTACTTT+GGG | 0.438762 | 4_1:-79706759 | Msa0575770:CDS |
| GATGTACCCATCTTTCTCTC+TGG | 0.444325 | 4_1:+79707014 | None:intergenic |
| GTATAAATGCTTACCTCAAA+AGG | 0.445098 | 4_1:+79706700 | None:intergenic |
| GCTGGCTTGTACAGGGGATT+CGG | 0.454958 | 4_1:-79706805 | Msa0575770:CDS |
| CATGCATTCCGTGAGATTGT+TGG | 0.459314 | 4_1:-79706160 | Msa0575770:CDS |
| ATTTGAAAAGTTTGGTTGAA+AGG | 0.460527 | 4_1:-79705884 | Msa0575770:three_prime_UTR |
| AGAATTTGCTATTAACAAAA+GGG | 0.471924 | 4_1:+79705754 | None:intergenic |
| GTGGCTTCAGGCAGTGCTGC+GGG | 0.472041 | 4_1:-79706973 | Msa0575770:CDS |
| CGCCGTATGATGCTAACCTC+CGG | 0.473932 | 4_1:-79706211 | Msa0575770:CDS |
| TATCTTTGAGAAATTAGAAT+GGG | 0.479160 | 4_1:-79705921 | Msa0575770:three_prime_UTR |
| CGTGAGATTGTTGGACAAGA+GGG | 0.488183 | 4_1:-79706151 | Msa0575770:CDS |
| ATGTATCGAGGAATGTACTT+TGG | 0.489826 | 4_1:-79706760 | Msa0575770:CDS |
| TAAAAGAGTCTTTGCTGAAG+AGG | 0.493467 | 4_1:-79707600 | Msa0575770:CDS |
| ACACCTAAGGGCAATTGAAA+AGG | 0.493715 | 4_1:-79705713 | Msa0575770:three_prime_UTR |
| ATAGAACAAATACCTTTGGC+TGG | 0.496788 | 4_1:+79705827 | None:intergenic |
| ATAATACTTATTCTGGTGCC+CGG | 0.509415 | 4_1:+79706192 | None:intergenic |
| TACTGTGTCTAGATGAGATA+CGG | 0.509802 | 4_1:+79706041 | None:intergenic |
| CGGCGGCGTAATGTGTCAAA+AGG | 0.510740 | 4_1:+79706229 | None:intergenic |
| AAAAGAGTCTTTGCTGAAGA+GGG | 0.517416 | 4_1:-79707599 | Msa0575770:CDS |
| TCTAGGGATGGCGGGAGCTG+GGG | 0.518411 | 4_1:-79706089 | Msa0575770:CDS |
| GGATATTCCAGAGAGAAAGA+TGG | 0.522046 | 4_1:-79707021 | Msa0575770:CDS |
| ATCGTTCTTATTTGTTTCGG+AGG | 0.525193 | 4_1:+79708062 | None:intergenic |
| GGTGTTGCTGGCTTGTACAG+GGG | 0.525521 | 4_1:-79706811 | Msa0575770:CDS |
| AATATCTAATAACATTGGCC+TGG | 0.525661 | 4_1:+79707552 | None:intergenic |
| TGGTGTTGCTGGCTTGTACA+GGG | 0.527675 | 4_1:-79706812 | Msa0575770:CDS |
| GGTGACCAGTGGCATGGCAC+TGG | 0.528489 | 4_1:+79706884 | None:intergenic |
| GGTTTCTTAGCTCTATTTCG+AGG | 0.528923 | 4_1:-79706130 | Msa0575770:CDS |
| CAAAGCGAAATGATTAAAAG+AGG | 0.529225 | 4_1:-79707662 | Msa0575770:CDS |
| TTATCTTTGAGAAATTAGAA+TGG | 0.532206 | 4_1:-79705922 | Msa0575770:three_prime_UTR |
| TCACTGCAAACATGCTTCTA+GGG | 0.533524 | 4_1:-79706105 | Msa0575770:CDS |
| GGCCTGGTGACCTCTCCAAA+AGG | 0.537477 | 4_1:+79707568 | None:intergenic |
| TTATTTAATTTACAATATCA+CGG | 0.538396 | 4_1:-79705628 | Msa0575770:three_prime_UTR |
| TCAGTCCAGTGCCATGCCAC+TGG | 0.539129 | 4_1:-79706889 | Msa0575770:CDS |
| GATATTCCAGAGAGAAAGAT+GGG | 0.540943 | 4_1:-79707020 | Msa0575770:CDS |
| CCGTGAGATTGTTGGACAAG+AGG | 0.542206 | 4_1:-79706152 | Msa0575770:CDS |
| GCCGTATGATGCTAACCTCC+GGG | 0.550555 | 4_1:-79706210 | Msa0575770:CDS |
| CGTGGCTTCAGGCAGTGCTG+CGG | 0.550723 | 4_1:-79706974 | Msa0575770:CDS |
| TGAAATAAATGACTGAATCA+TGG | 0.551174 | 4_1:-79705991 | Msa0575770:exon |
| AACATGCTTCTAGGGATGGC+GGG | 0.552983 | 4_1:-79706097 | Msa0575770:CDS |
| AAAGTACATTCCTCGATACA+TGG | 0.553101 | 4_1:+79706762 | None:intergenic |
| GCCTTATTGATACACACCTA+AGG | 0.554565 | 4_1:-79705726 | Msa0575770:three_prime_UTR |
| TAAAGGTATTAGACAAACCA+AGG | 0.560990 | 4_1:+79707621 | None:intergenic |
| GCCCGGAGGTTAGCATCATA+CGG | 0.563536 | 4_1:+79706209 | None:intergenic |
| AAGAATCATCTCACCTGTGT+GGG | 0.566020 | 4_1:+79707527 | None:intergenic |
| CGGTGAATGCTGTTCATACG+AGG | 0.567328 | 4_1:-79705654 | Msa0575770:three_prime_UTR |
| CAAATGATACAAAAGTATTG+AGG | 0.568033 | 4_1:+79706942 | None:intergenic |
| TGCAAACATGCTTCTAGGGA+TGG | 0.571454 | 4_1:-79706101 | Msa0575770:CDS |
| CGTAAAACAATATCAAGTGA+TGG | 0.574072 | 4_1:-79706832 | Msa0575770:CDS |
| AACCTCAAAACACCATACCT+TGG | 0.575189 | 4_1:-79707638 | Msa0575770:CDS |
| GGTACATCAAGTGGTTTGCT+GGG | 0.575345 | 4_1:-79706999 | Msa0575770:CDS |
| CTCGTATGAACAGCATTCAC+CGG | 0.587186 | 4_1:+79705655 | None:intergenic |
| GGGAAAATATCTAATAACAT+TGG | 0.589711 | 4_1:+79707547 | None:intergenic |
| CAAGTGGTTTGCTGGGAACG+TGG | 0.595268 | 4_1:-79706992 | Msa0575770:CDS |
| GTATTAGACAAACCAAGGTA+TGG | 0.595810 | 4_1:+79707626 | None:intergenic |
| AGAAAGATGGGTACATCAAG+TGG | 0.605042 | 4_1:-79707008 | Msa0575770:CDS |
| CCTTATTGATACACACCTAA+GGG | 0.605412 | 4_1:-79705725 | Msa0575770:three_prime_UTR |
| GAATTAGTCCTTTAAACTGA+CGG | 0.606819 | 4_1:+79706863 | None:intergenic |
| CCTCTTGTCCAACAATCTCA+CGG | 0.613033 | 4_1:+79706152 | None:intergenic |
| GGTGACCTCTCCAAAAGGCA+AGG | 0.614061 | 4_1:+79707573 | None:intergenic |
| AAACATGCTTCTAGGGATGG+CGG | 0.631697 | 4_1:-79706098 | Msa0575770:CDS |
| AAAGAATCATCTCACCTGTG+TGG | 0.633520 | 4_1:+79707526 | None:intergenic |
| ACTGACGGTGACCAGTGGCA+TGG | 0.636991 | 4_1:+79706878 | None:intergenic |
| TTGGGAATCACCATGTATCG+AGG | 0.659477 | 4_1:-79706772 | Msa0575770:CDS |
| ATGGATATGACACCAGCCAA+AGG | 0.662792 | 4_1:-79705839 | Msa0575770:three_prime_UTR |
| TATCAAGTCAAATACAACAC+CGG | 0.670581 | 4_1:+79705462 | None:intergenic |
| AATCATATCCAAAACTGCAG+TGG | 0.672395 | 4_1:-79707720 | Msa0575770:CDS |
| TTTAAACTGACGGTGACCAG+TGG | 0.674236 | 4_1:+79706873 | None:intergenic |
| ATGGCACTGGACTGAATCAG+TGG | 0.678456 | 4_1:+79706897 | None:intergenic |
| ATACTTATTCTGGTGCCCGG+AGG | 0.698949 | 4_1:+79706195 | None:intergenic |
| AATAAATGACTGAATCATGG+TGG | 0.703961 | 4_1:-79705988 | Msa0575770:exon |
| CGGAGGTTAGCATCATACGG+CGG | 0.746342 | 4_1:+79706212 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAAAAATAAAAATAAAA+TGG | - | chr4_1:79705514-79705533 | Msa0575770:three_prime_UTR | 0.0% |
| !! | TAAAAATAAAAATAAAATGG+CGG | - | chr4_1:79705517-79705536 | Msa0575770:three_prime_UTR | 10.0% |
| !! | TAATATAAAAACTCTAATAT+TGG | + | chr4_1:79706948-79706967 | None:intergenic | 10.0% |
| !!! | TTATTTAATTTACAATATCA+CGG | - | chr4_1:79707878-79707897 | Msa0575770:intron | 10.0% |
| !! | CATAATAACATATAAAAATT+TGG | + | chr4_1:79707904-79707923 | None:intergenic | 10.0% |
| !! | TATGTTAAAATTAAAGGTAA+GGG | + | chr4_1:79706994-79707013 | None:intergenic | 15.0% |
| !! | AAGATGTATGTTAAAATTAA+AGG | + | chr4_1:79707000-79707019 | None:intergenic | 15.0% |
| !!! | CAAAGATAAATATGATTTTT+AGG | + | chr4_1:79707573-79707592 | None:intergenic | 15.0% |
| !!! | ATAAAAATTTGAGTTAGTTT+CGG | - | chr4_1:79707939-79707958 | Msa0575770:intron | 15.0% |
| !!! | ACAAAATTATTAGTATTTTC+CGG | - | chr4_1:79708025-79708044 | Msa0575770:five_prime_UTR | 15.0% |
| !! | ACAAAAGATATTGAATGAAT+CGG | + | chr4_1:79705633-79705652 | None:intergenic | 20.0% |
| !!! | AAAATCAGAATCATTTTCAA+AGG | - | chr4_1:79705738-79705757 | Msa0575770:three_prime_UTR | 20.0% |
| !!! | ATTTTCAAAGGATTTTGTAA+TGG | - | chr4_1:79705750-79705769 | Msa0575770:three_prime_UTR | 20.0% |
| !!! | TTTTCAAAGGATTTTGTAAT+GGG | - | chr4_1:79705751-79705770 | Msa0575770:three_prime_UTR | 20.0% |
| !! | CATTACAAAACAAGTATAAT+AGG | + | chr4_1:79706059-79706078 | None:intergenic | 20.0% |
| !!! | TACTTGTTTTGTAATGTTTT+TGG | - | chr4_1:79706063-79706082 | Msa0575770:CDS | 20.0% |
| !! | TGAAATTGAGAATTATTTGA+GGG | + | chr4_1:79706191-79706210 | None:intergenic | 20.0% |
| !! | TTGAAATTGAGAATTATTTG+AGG | + | chr4_1:79706192-79706211 | None:intergenic | 20.0% |
| !! | CTCAATTTCAATTAAAACAT+AGG | - | chr4_1:79706201-79706220 | Msa0575770:CDS | 20.0% |
| !! | TTTGATTGGAATACAAAATA+CGG | + | chr4_1:79706352-79706371 | None:intergenic | 20.0% |
| !! | GTATGTTAAAATTAAAGGTA+AGG | + | chr4_1:79706995-79707014 | None:intergenic | 20.0% |
| !! | TTGCATTATAATACTTATTC+TGG | + | chr4_1:79707324-79707343 | None:intergenic | 20.0% |
| !!! | TTATCTTTGAGAAATTAGAA+TGG | - | chr4_1:79707584-79707603 | Msa0575770:CDS | 20.0% |
| !!! | TATCTTTGAGAAATTAGAAT+GGG | - | chr4_1:79707585-79707604 | Msa0575770:CDS | 20.0% |
| !!! | TTTTATAGAACAAATACCTT+TGG | + | chr4_1:79707686-79707705 | None:intergenic | 20.0% |
| !!! | AGAATTTGCTATTAACAAAA+GGG | + | chr4_1:79707755-79707774 | None:intergenic | 20.0% |
| !!! | AAGAATTTGCTATTAACAAA+AGG | + | chr4_1:79707756-79707775 | None:intergenic | 20.0% |
| !! | ACTGATGATATAAAAATATC+AGG | + | chr4_1:79708004-79708023 | None:intergenic | 20.0% |
| !! | TGTATCGTTCTTATTTGTTT+CGG | + | chr4_1:79705450-79705469 | None:intergenic | 25.0% |
| ! | GAATGAAAAGTTAAGAAGTA+GGG | + | chr4_1:79705593-79705612 | None:intergenic | 25.0% |
| ! | TGAATGAAAAGTTAAGAAGT+AGG | + | chr4_1:79705594-79705613 | None:intergenic | 25.0% |
| ! | TAATCCTGATAGATAAAAAG+TGG | + | chr4_1:79705698-79705717 | None:intergenic | 25.0% |
| !! | TTTTTATCTATCAGGATTAG+CGG | - | chr4_1:79705699-79705718 | Msa0575770:three_prime_UTR | 25.0% |
| ! | GGGAAAATATCTAATAACAT+TGG | + | chr4_1:79705962-79705981 | None:intergenic | 25.0% |
| ! | TTGATTGGAATACAAAATAC+GGG | + | chr4_1:79706351-79706370 | None:intergenic | 25.0% |
| ! | TATTTGAGCAAACAGTTAAT+TGG | - | chr4_1:79706413-79706432 | Msa0575770:intron | 25.0% |
| !!! | CAAATGATACAAAAGTATTG+AGG | + | chr4_1:79706567-79706586 | None:intergenic | 25.0% |
| !! | CTCAATACTTTTGTATCATT+TGG | - | chr4_1:79706565-79706584 | Msa0575770:intron | 25.0% |
| ! | AACATAGATCTATAATTCAC+AGG | - | chr4_1:79706846-79706865 | Msa0575770:CDS | 25.0% |
| !! | TATTATGCTGCTTATATTGA+TGG | - | chr4_1:79706963-79706982 | Msa0575770:CDS | 25.0% |
| !!! | TCTTTTGATTTATATTCTGC+AGG | - | chr4_1:79707189-79707208 | Msa0575770:intron | 25.0% |
| !!! | CTTTTGATTTATATTCTGCA+GGG | - | chr4_1:79707190-79707209 | Msa0575770:intron | 25.0% |
| !!! | TTTTGATTTATATTCTGCAG+GGG | - | chr4_1:79707191-79707210 | Msa0575770:intron | 25.0% |
| ! | TCATTTATTTCATGACTCTT+TGG | + | chr4_1:79707507-79707526 | None:intergenic | 25.0% |
| ! | TGAAATAAATGACTGAATCA+TGG | - | chr4_1:79707515-79707534 | Msa0575770:intron | 25.0% |
| ! | AGAAATTAGAATGGGTATTA+TGG | - | chr4_1:79707593-79707612 | Msa0575770:CDS | 25.0% |
| ! | ATTTGAAAAGTTTGGTTGAA+AGG | - | chr4_1:79707622-79707641 | Msa0575770:CDS | 25.0% |
| ! | ACATACACCAAACAAATTTA+TGG | - | chr4_1:79707648-79707667 | Msa0575770:CDS | 25.0% |
| !! | GTCATATCCATAAATTTGTT+TGG | + | chr4_1:79707658-79707677 | None:intergenic | 25.0% |
| GTGAATAATTCATTCGATTC+AGG | - | chr4_1:79705565-79705584 | Msa0575770:three_prime_UTR | 30.0% | |
| ! | AAAAAGTGGTTTGAAGCAAT+CGG | + | chr4_1:79705684-79705703 | None:intergenic | 30.0% |
| !!! | CAAACCACTTTTTATCTATC+AGG | - | chr4_1:79705691-79705710 | Msa0575770:three_prime_UTR | 30.0% |
| !! | TTTTATCTATCAGGATTAGC+GGG | - | chr4_1:79705700-79705719 | Msa0575770:three_prime_UTR | 30.0% |
| AAAAGCTTCACTCTTTCAAT+TGG | + | chr4_1:79705814-79705833 | None:intergenic | 30.0% | |
| ! | CTCTTTTAATCATTTCGCTT+TGG | + | chr4_1:79705846-79705865 | None:intergenic | 30.0% |
| CAAAGCGAAATGATTAAAAG+AGG | - | chr4_1:79705844-79705863 | Msa0575770:three_prime_UTR | 30.0% | |
| !! | TAAAGGTATTAGACAAACCA+AGG | + | chr4_1:79705888-79705907 | None:intergenic | 30.0% |
| ! | TTCAGCAAAGACTCTTTTAA+AGG | + | chr4_1:79705905-79705924 | None:intergenic | 30.0% |
| AATATCTAATAACATTGGCC+TGG | + | chr4_1:79705957-79705976 | None:intergenic | 30.0% | |
| ! | TATTAGATATTTTCCCACAC+AGG | - | chr4_1:79705966-79705985 | Msa0575770:three_prime_UTR | 30.0% |
| AGTGAACTAATTACAACACA+CGG | + | chr4_1:79706123-79706142 | None:intergenic | 30.0% | |
| ATTAGTTCACTAAAAAGTCC+AGG | - | chr4_1:79706132-79706151 | Msa0575770:CDS | 30.0% | |
| ATGAGAATTTGATATACGTG+AGG | + | chr4_1:79706243-79706262 | None:intergenic | 30.0% | |
| ! | CAAACAGTTAATTGGTCTAT+AGG | - | chr4_1:79706421-79706440 | Msa0575770:intron | 30.0% |
| ! | GCTTTCAATTTTGCATTCAA+AGG | - | chr4_1:79706443-79706462 | Msa0575770:intron | 30.0% |
| GAATTAGTCCTTTAAACTGA+CGG | + | chr4_1:79706646-79706665 | None:intergenic | 30.0% | |
| CGTAAAACAATATCAAGTGA+TGG | - | chr4_1:79706674-79706693 | Msa0575770:intron | 30.0% | |
| AACTAAAACAATAGGCTTCA+TGG | + | chr4_1:79706783-79706802 | None:intergenic | 30.0% | |
| !!! | ATGAAGCCTATTGTTTTAGT+TGG | - | chr4_1:79706782-79706801 | Msa0575770:CDS | 30.0% |
| AAAGGTCCAACTAAAACAAT+AGG | + | chr4_1:79706791-79706810 | None:intergenic | 30.0% | |
| GTATAAATGCTTACCTCAAA+AGG | + | chr4_1:79706809-79706828 | None:intergenic | 30.0% | |
| ATCTATAATTCACAGGCAAT+GGG | - | chr4_1:79706853-79706872 | Msa0575770:CDS | 30.0% | |
| CAAGTTAGACAACAGTAATT+TGG | - | chr4_1:79707038-79707057 | Msa0575770:CDS | 30.0% | |
| TCAAAATGCTATACCAACAA+GGG | + | chr4_1:79707112-79707131 | None:intergenic | 30.0% | |
| ATCAAAATGCTATACCAACA+AGG | + | chr4_1:79707113-79707132 | None:intergenic | 30.0% | |
| ATGAATTTATGTCAGAGCAT+TGG | - | chr4_1:79707131-79707150 | Msa0575770:intron | 30.0% | |
| ! | TTCTTTGCTAGTTTCTTGTT+AGG | - | chr4_1:79707217-79707236 | Msa0575770:intron | 30.0% |
| AATAAATGACTGAATCATGG+TGG | - | chr4_1:79707518-79707537 | Msa0575770:intron | 30.0% | |
| !! | AATCATGGTGGAATTTTCAA+GGG | - | chr4_1:79707530-79707549 | Msa0575770:intron | 30.0% |
| ! | TCAAGGGAGAAATACATTTT+TGG | - | chr4_1:79707546-79707565 | Msa0575770:CDS | 30.0% |
| AAAAGGGAGAATGAAATCTA+AGG | + | chr4_1:79707739-79707758 | None:intergenic | 30.0% | |
| TATCAAGTCAAATACAACAC+CGG | + | chr4_1:79708047-79708066 | None:intergenic | 30.0% | |
| TGATATTGTACTCTATTGTC+TGG | - | chr4_1:79708062-79708081 | Msa0575770:five_prime_UTR | 30.0% | |
| ! | ATCGTTCTTATTTGTTTCGG+AGG | + | chr4_1:79705447-79705466 | None:intergenic | 35.0% |
| ATTAGCGGGAAGAAGAAATA+TGG | - | chr4_1:79705714-79705733 | Msa0575770:three_prime_UTR | 35.0% | |
| !! | TCAAAGGATTTTGTAATGGG+AGG | - | chr4_1:79705754-79705773 | Msa0575770:three_prime_UTR | 35.0% |
| AATCATATCCAAAACTGCAG+TGG | - | chr4_1:79705786-79705805 | Msa0575770:three_prime_UTR | 35.0% | |
| GTATTAGACAAACCAAGGTA+TGG | + | chr4_1:79705883-79705902 | None:intergenic | 35.0% | |
| TAAAAGAGTCTTTGCTGAAG+AGG | - | chr4_1:79705906-79705925 | Msa0575770:three_prime_UTR | 35.0% | |
| AAAAGAGTCTTTGCTGAAGA+GGG | - | chr4_1:79705907-79705926 | Msa0575770:three_prime_UTR | 35.0% | |
| TATTTACCTCATCTTTGAGC+TGG | - | chr4_1:79706019-79706038 | Msa0575770:CDS | 35.0% | |
| GTGAACTAATTACAACACAC+GGG | + | chr4_1:79706122-79706141 | None:intergenic | 35.0% | |
| GGAAAAACTAATGTCCATAG+AGG | + | chr4_1:79706170-79706189 | None:intergenic | 35.0% | |
| !! | TTTTCAAGGGGTAAAAACGA+TGG | + | chr4_1:79706278-79706297 | None:intergenic | 35.0% |
| ! | TGCTGGTCATACATTTTCAA+GGG | + | chr4_1:79706291-79706310 | None:intergenic | 35.0% |
| ! | ATGCTGGTCATACATTTTCA+AGG | + | chr4_1:79706292-79706311 | None:intergenic | 35.0% |
| ! | AAGACTGTTATTTGAGAGCA+GGG | + | chr4_1:79706375-79706394 | None:intergenic | 35.0% |
| ! | AAAGACTGTTATTTGAGAGC+AGG | + | chr4_1:79706376-79706395 | None:intergenic | 35.0% |
| !! | GGTTACTTCAAAAGCATCTT+TGG | - | chr4_1:79706464-79706483 | Msa0575770:intron | 35.0% |
| GATATTCCAGAGAGAAAGAT+GGG | - | chr4_1:79706486-79706505 | Msa0575770:intron | 35.0% | |
| !! | GGATTCGGTGTTTCAATATT+GGG | - | chr4_1:79706716-79706735 | Msa0575770:CDS | 35.0% |
| AAAGTACATTCCTCGATACA+TGG | + | chr4_1:79706747-79706766 | None:intergenic | 35.0% | |
| ATGTATCGAGGAATGTACTT+TGG | - | chr4_1:79706746-79706765 | Msa0575770:CDS | 35.0% | |
| TGTATCGAGGAATGTACTTT+GGG | - | chr4_1:79706747-79706766 | Msa0575770:CDS | 35.0% | |
| !!! | TGTTTTAGTTGGACCTTTTG+AGG | - | chr4_1:79706793-79706812 | Msa0575770:CDS | 35.0% |
| GATCTATAATTCACAGGCAA+TGG | - | chr4_1:79706852-79706871 | Msa0575770:CDS | 35.0% | |
| GGGTTAATAATTGCTTCTCT+TGG | - | chr4_1:79706884-79706903 | Msa0575770:CDS | 35.0% | |
| ! | TTTTTCGTCTGTTCCATGTT+AGG | - | chr4_1:79706914-79706933 | Msa0575770:CDS | 35.0% |
| GTTTATTTATGCCCTTGCAT+TGG | - | chr4_1:79707158-79707177 | Msa0575770:intron | 35.0% | |
| AGACTCATATTCCAATGCAA+GGG | + | chr4_1:79707172-79707191 | None:intergenic | 35.0% | |
| AAGACTCATATTCCAATGCA+AGG | + | chr4_1:79707173-79707192 | None:intergenic | 35.0% | |
| ! | TTGCTAGTTTCTTGTTAGGT+TGG | - | chr4_1:79707221-79707240 | Msa0575770:intron | 35.0% |
| ATAATACTTATTCTGGTGCC+CGG | + | chr4_1:79707317-79707336 | None:intergenic | 35.0% | |
| TACTGTGTCTAGATGAGATA+CGG | + | chr4_1:79707468-79707487 | None:intergenic | 35.0% | |
| !! | GAATCATGGTGGAATTTTCA+AGG | - | chr4_1:79707529-79707548 | Msa0575770:intron | 35.0% |
| GGCTCTTCATTTGAAAAGTT+TGG | - | chr4_1:79707614-79707633 | Msa0575770:CDS | 35.0% | |
| ATAGAACAAATACCTTTGGC+TGG | + | chr4_1:79707682-79707701 | None:intergenic | 35.0% | |
| !!! | CTCTAGTCAGAGTTTTGAAT+AGG | - | chr4_1:79707712-79707731 | Msa0575770:CDS | 35.0% |
| CCTTATTGATACACACCTAA+GGG | - | chr4_1:79707781-79707800 | Msa0575770:exon | 35.0% | |
| ! | ATACCTTTTCAATTGCCCTT+AGG | + | chr4_1:79707799-79707818 | None:intergenic | 35.0% |
| !! | GAGTTTCCTCTAAAAGTATC+TGG | + | chr4_1:79708101-79708120 | None:intergenic | 35.0% |
| ! | AATGGCGGTCTTGATTTTGT+TGG | - | chr4_1:79705532-79705551 | Msa0575770:three_prime_UTR | 40.0% |
| AACCTCAAAACACCATACCT+TGG | - | chr4_1:79705868-79705887 | Msa0575770:three_prime_UTR | 40.0% | |
| ! | AACCAAGGTATGGTGTTTTG+AGG | + | chr4_1:79705873-79705892 | None:intergenic | 40.0% |
| AAGAATCATCTCACCTGTGT+GGG | + | chr4_1:79705982-79706001 | None:intergenic | 40.0% | |
| AAAGAATCATCTCACCTGTG+TGG | + | chr4_1:79705983-79706002 | None:intergenic | 40.0% | |
| CATTTACCAGCTCAAAGATG+AGG | + | chr4_1:79706028-79706047 | None:intergenic | 40.0% | |
| CTCATCTTTGAGCTGGTAAA+TGG | - | chr4_1:79706026-79706045 | Msa0575770:CDS | 40.0% | |
| AAAACATAGGTTACCTCACG+AGG | - | chr4_1:79706214-79706233 | Msa0575770:CDS | 40.0% | |
| !! | GCTGGTCATACATTTTCAAG+GGG | + | chr4_1:79706290-79706309 | None:intergenic | 40.0% |
| ATTTGAGAGCAGGGTTTGAT+TGG | + | chr4_1:79706366-79706385 | None:intergenic | 40.0% | |
| GGATATTCCAGAGAGAAAGA+TGG | - | chr4_1:79706485-79706504 | Msa0575770:intron | 40.0% | |
| AGAAAGATGGGTACATCAAG+TGG | - | chr4_1:79706498-79706517 | Msa0575770:intron | 40.0% | |
| !! | ATATCAAGTGATGGTGTTGC+TGG | - | chr4_1:79706683-79706702 | Msa0575770:intron | 40.0% |
| !! | GGGATTCGGTGTTTCAATAT+TGG | - | chr4_1:79706715-79706734 | Msa0575770:CDS | 40.0% |
| TCACAGGCAATGGGAAAATA+TGG | - | chr4_1:79706862-79706881 | Msa0575770:CDS | 40.0% | |
| CACAGGCAATGGGAAAATAT+GGG | - | chr4_1:79706863-79706882 | Msa0575770:CDS | 40.0% | |
| ACAGGCAATGGGAAAATATG+GGG | - | chr4_1:79706864-79706883 | Msa0575770:CDS | 40.0% | |
| ATTGGCATGCATACCTAACA+TGG | + | chr4_1:79706930-79706949 | None:intergenic | 40.0% | |
| TACCAACAAGGGATGTATCT+GGG | + | chr4_1:79707101-79707120 | None:intergenic | 40.0% | |
| ATACCAACAAGGGATGTATC+TGG | + | chr4_1:79707102-79707121 | None:intergenic | 40.0% | |
| !! | GGTTTCTTAGCTCTATTTCG+AGG | - | chr4_1:79707376-79707395 | Msa0575770:intron | 40.0% |
| TCACTGCAAACATGCTTCTA+GGG | - | chr4_1:79707401-79707420 | Msa0575770:intron | 40.0% | |
| ! | GCCTTATTGATACACACCTA+AGG | - | chr4_1:79707780-79707799 | Msa0575770:exon | 40.0% |
| CCCTTAGGTGTGTATCAATA+AGG | + | chr4_1:79707784-79707803 | None:intergenic | 40.0% | |
| ACACCTAAGGGCAATTGAAA+AGG | - | chr4_1:79707793-79707812 | Msa0575770:exon | 40.0% | |
| !! | TGCAGTTAACTTGTCTGTTC+CGG | - | chr4_1:79707832-79707851 | Msa0575770:intron | 40.0% |
| ! | GACATGCCAGATACTTTTAG+AGG | - | chr4_1:79708092-79708111 | Msa0575770:five_prime_UTR | 40.0% |
| !!! | AATTGGTGCCACTGCAGTTT+TGG | + | chr4_1:79705797-79705816 | None:intergenic | 45.0% |
| TAGAGGAGAGAGATTTGACC+TGG | + | chr4_1:79706153-79706172 | None:intergenic | 45.0% | |
| GGTCAAATCTCTCTCCTCTA+TGG | - | chr4_1:79706153-79706172 | Msa0575770:CDS | 45.0% | |
| CAATGAACACACAGTGATGC+TGG | + | chr4_1:79706308-79706327 | None:intergenic | 45.0% | |
| GATGTACCCATCTTTCTCTC+TGG | + | chr4_1:79706495-79706514 | None:intergenic | 45.0% | |
| !! | GGTACATCAAGTGGTTTGCT+GGG | - | chr4_1:79706507-79706526 | Msa0575770:intron | 45.0% |
| GGACTTTGCACGTACAAGAT+TGG | - | chr4_1:79706586-79706605 | Msa0575770:intron | 45.0% | |
| TTTAAACTGACGGTGACCAG+TGG | + | chr4_1:79706636-79706655 | None:intergenic | 45.0% | |
| ACTGGTCACCGTCAGTTTAA+AGG | - | chr4_1:79706635-79706654 | Msa0575770:intron | 45.0% | |
| TTGGGAATCACCATGTATCG+AGG | - | chr4_1:79706734-79706753 | Msa0575770:CDS | 45.0% | |
| TTCCCAGATACATCCCTTGT+TGG | - | chr4_1:79707096-79707115 | Msa0575770:intron | 45.0% | |
| ! | TGGAGCATCACAACTGTATC+TGG | - | chr4_1:79707241-79707260 | Msa0575770:intron | 45.0% |
| CATGCATTCCGTGAGATTGT+TGG | - | chr4_1:79707346-79707365 | Msa0575770:intron | 45.0% | |
| CCTCTTGTCCAACAATCTCA+CGG | + | chr4_1:79707357-79707376 | None:intergenic | 45.0% | |
| CGTGAGATTGTTGGACAAGA+GGG | - | chr4_1:79707355-79707374 | Msa0575770:intron | 45.0% | |
| GTCACTGCAAACATGCTTCT+AGG | - | chr4_1:79707400-79707419 | Msa0575770:intron | 45.0% | |
| ! | TGCAAACATGCTTCTAGGGA+TGG | - | chr4_1:79707405-79707424 | Msa0575770:intron | 45.0% |
| ! | AAACATGCTTCTAGGGATGG+CGG | - | chr4_1:79707408-79707427 | Msa0575770:intron | 45.0% |
| ATGGATATGACACCAGCCAA+AGG | - | chr4_1:79707667-79707686 | Msa0575770:CDS | 45.0% | |
| CTCGTATGAACAGCATTCAC+CGG | + | chr4_1:79707854-79707873 | None:intergenic | 45.0% | |
| ! | AAGAGGGTCTCCTTGCCTTT+TGG | - | chr4_1:79705923-79705942 | Msa0575770:three_prime_UTR | 50.0% |
| ATACGTGAGGTAACCTCGTG+AGG | + | chr4_1:79706230-79706249 | None:intergenic | 50.0% | |
| ! | GGGTACATCAAGTGGTTTGC+TGG | - | chr4_1:79706506-79706525 | Msa0575770:intron | 50.0% |
| ! | ATGGCACTGGACTGAATCAG+TGG | + | chr4_1:79706612-79706631 | None:intergenic | 50.0% |
| !! | ATGGTGTTGCTGGCTTGTAC+AGG | - | chr4_1:79706693-79706712 | Msa0575770:intron | 50.0% |
| !! | TGGTGTTGCTGGCTTGTACA+GGG | - | chr4_1:79706694-79706713 | Msa0575770:intron | 50.0% |
| ATACTTATTCTGGTGCCCGG+AGG | + | chr4_1:79707314-79707333 | None:intergenic | 50.0% | |
| CCGTGAGATTGTTGGACAAG+AGG | - | chr4_1:79707354-79707373 | Msa0575770:intron | 50.0% | |
| ! | AACATGCTTCTAGGGATGGC+GGG | - | chr4_1:79707409-79707428 | Msa0575770:intron | 50.0% |
| CGGTGAATGCTGTTCATACG+AGG | - | chr4_1:79707852-79707871 | Msa0575770:intron | 50.0% | |
| !! | GGTCTCCTTGCCTTTTGGAG+AGG | - | chr4_1:79705928-79705947 | Msa0575770:three_prime_UTR | 55.0% |
| GGTGACCTCTCCAAAAGGCA+AGG | + | chr4_1:79705936-79705955 | None:intergenic | 55.0% | |
| !! | TGCCTTTTGGAGAGGTCACC+AGG | - | chr4_1:79705936-79705955 | Msa0575770:three_prime_UTR | 55.0% |
| !! | CAAGTGGTTTGCTGGGAACG+TGG | - | chr4_1:79706514-79706533 | Msa0575770:intron | 55.0% |
| TTTGCTGGGAACGTGGCTTC+AGG | - | chr4_1:79706521-79706540 | Msa0575770:intron | 55.0% | |
| !! | GGTGTTGCTGGCTTGTACAG+GGG | - | chr4_1:79706695-79706714 | Msa0575770:intron | 55.0% |
| !! | GCTGGCTTGTACAGGGGATT+CGG | - | chr4_1:79706701-79706720 | Msa0575770:intron | 55.0% |
| CGGCGGCGTAATGTGTCAAA+AGG | + | chr4_1:79707280-79707299 | None:intergenic | 55.0% | |
| CGGAGGTTAGCATCATACGG+CGG | + | chr4_1:79707297-79707316 | None:intergenic | 55.0% | |
| CGCCGTATGATGCTAACCTC+CGG | - | chr4_1:79707295-79707314 | Msa0575770:intron | 55.0% | |
| GCCGTATGATGCTAACCTCC+GGG | - | chr4_1:79707296-79707315 | Msa0575770:intron | 55.0% | |
| GCCCGGAGGTTAGCATCATA+CGG | + | chr4_1:79707300-79707319 | None:intergenic | 55.0% | |
| GGCCTGGTGACCTCTCCAAA+AGG | + | chr4_1:79705941-79705960 | None:intergenic | 60.0% | |
| TCAGTCCAGTGCCATGCCAC+TGG | - | chr4_1:79706617-79706636 | Msa0575770:intron | 60.0% | |
| ACTGACGGTGACCAGTGGCA+TGG | + | chr4_1:79706631-79706650 | None:intergenic | 60.0% | |
| !! | TTCTAGGGATGGCGGGAGCT+GGG | - | chr4_1:79707416-79707435 | Msa0575770:intron | 60.0% |
| CGTGGCTTCAGGCAGTGCTG+CGG | - | chr4_1:79706532-79706551 | Msa0575770:intron | 65.0% | |
| GTGGCTTCAGGCAGTGCTGC+GGG | - | chr4_1:79706533-79706552 | Msa0575770:intron | 65.0% | |
| GGTGACCAGTGGCATGGCAC+TGG | + | chr4_1:79706625-79706644 | None:intergenic | 65.0% | |
| !! | CTTCTAGGGATGGCGGGAGC+TGG | - | chr4_1:79707415-79707434 | Msa0575770:intron | 65.0% |
| !! | TCTAGGGATGGCGGGAGCTG+GGG | - | chr4_1:79707417-79707436 | Msa0575770:intron | 65.0% |
| ! | CGGGAGCTGGGGTGCTTGCT+GGG | - | chr4_1:79707428-79707447 | Msa0575770:intron | 70.0% |
| ! | GCGGGAGCTGGGGTGCTTGC+TGG | - | chr4_1:79707427-79707446 | Msa0575770:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 79705404 | 79708124 | 79705404 | ID=Msa0575770;Name=Msa0575770 |
| chr4_1 | mRNA | 79705404 | 79708124 | 79705404 | ID=Msa0575770-mRNA-1;Parent=Msa0575770;Name=Msa0575770-mRNA-1;_AED=0.11;_eAED=0.11;_QI=203|1|1|1|0.66|0.5|4|602|312 |
| chr4_1 | exon | 79705404 | 79706317 | 79705404 | ID=Msa0575770-mRNA-1:exon:28509;Parent=Msa0575770-mRNA-1 |
| chr4_1 | exon | 79706714 | 79707085 | 79706714 | ID=Msa0575770-mRNA-1:exon:28508;Parent=Msa0575770-mRNA-1 |
| chr4_1 | exon | 79707541 | 79707815 | 79707541 | ID=Msa0575770-mRNA-1:exon:28507;Parent=Msa0575770-mRNA-1 |
| chr4_1 | exon | 79707942 | 79708124 | 79707942 | ID=Msa0575770-mRNA-1:exon:28506;Parent=Msa0575770-mRNA-1 |
| chr4_1 | five_prime_UTR | 79707942 | 79708124 | 79707942 | ID=Msa0575770-mRNA-1:five_prime_utr;Parent=Msa0575770-mRNA-1 |
| chr4_1 | five_prime_UTR | 79707796 | 79707815 | 79707796 | ID=Msa0575770-mRNA-1:five_prime_utr;Parent=Msa0575770-mRNA-1 |
| chr4_1 | CDS | 79707541 | 79707795 | 79707541 | ID=Msa0575770-mRNA-1:cds;Parent=Msa0575770-mRNA-1 |
| chr4_1 | CDS | 79706714 | 79707085 | 79706714 | ID=Msa0575770-mRNA-1:cds;Parent=Msa0575770-mRNA-1 |
| chr4_1 | CDS | 79706006 | 79706317 | 79706006 | ID=Msa0575770-mRNA-1:cds;Parent=Msa0575770-mRNA-1 |
| chr4_1 | three_prime_UTR | 79705404 | 79706005 | 79705404 | ID=Msa0575770-mRNA-1:three_prime_utr;Parent=Msa0575770-mRNA-1 |
| Gene Sequence |
| Protein sequence |
