AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1161520


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1161520 MtrunA17_Chr7g0255071 96.078 255 3 2 1 251 1 252 0.0 504
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1161520 AT2G41120.1 64.641 181 56 2 76 250 79 257 4.74e-82 246

Find 69 sgRNAs with CRISPR-Local

Find 187 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACCTCATCCCTTCTTCTTT+AGG 0.216226 7_4:+51731567 Msa1161520:CDS
GAAAGATATTTCAGCAGTTT+TGG 0.240858 7_4:+51732085 Msa1161520:CDS
TTCACACCATTCATCATCTA+TGG 0.281172 7_4:+51731473 Msa1161520:exon
CCATGAATTAGTGTTCTTGA+TGG 0.287810 7_4:-51731807 None:intergenic
AGAAAGATCCTACCAACTTA+TGG 0.295152 7_4:+51732399 Msa1161520:CDS
CAAAATCAATGGAAAATGTT+TGG 0.326567 7_4:-51732791 None:intergenic
TTGAAATTCAGGTGCTGCTT+TGG 0.329593 7_4:-51731609 None:intergenic
AAAGGAGCTATGATGGAGTT+AGG 0.335188 7_4:+51732002 Msa1161520:CDS
AACTTAAGAAACGGTCCATT+AGG 0.336744 7_4:-51732059 None:intergenic
TATATCGTGGCTACTACTTC+AGG 0.362312 7_4:-51732699 None:intergenic
ATTTCATCACCTATTCAATC+AGG 0.383372 7_4:+51731851 Msa1161520:CDS
ATGACTATCTTGAGTCCCTT+TGG 0.389670 7_4:+51731769 Msa1161520:CDS
CTTGAGCAAGCATCTTTGAA+TGG 0.392906 7_4:+51732673 Msa1161520:three_prime_UTR
AAGGAGCTATGATGGAGTTA+GGG 0.411699 7_4:+51732003 Msa1161520:CDS
AGCTCTTTGTTGTTTCATAC+AGG 0.411815 7_4:+51731646 Msa1161520:CDS
TGAGGTATGGGTGATAAAGT+TGG 0.413176 7_4:-51731551 None:intergenic
TATTGAAAACCTGATTGAAT+AGG 0.413740 7_4:-51731860 None:intergenic
GAAAGATCCTACCAACTTAT+GGG 0.416370 7_4:+51732400 Msa1161520:CDS
CCATCAAGAACACTAATTCA+TGG 0.433044 7_4:+51731807 Msa1161520:CDS
CTCCAAGGGCAAAGCTTCCC+AGG 0.433451 7_4:+51732524 Msa1161520:CDS
TACATTGTGTTCTGCCCTCA+AGG 0.434776 7_4:+51732481 Msa1161520:CDS
CTTTGCCCTTGGAGCTTCAG+TGG 0.439060 7_4:-51732515 None:intergenic
GAAGCAGTGACTCTATTTAA+TGG 0.441092 7_4:+51731726 Msa1161520:CDS
CGCGTATATGATCTAGAACT+TGG 0.442298 7_4:+51732442 Msa1161520:CDS
ATCTAAATCTACAAAATCAA+TGG 0.445583 7_4:-51732802 None:intergenic
ACTTAAGAAACGGTCCATTA+GGG 0.450454 7_4:-51732058 None:intergenic
TGCTGAATATAGAATCATAA+AGG 0.459099 7_4:+51731984 Msa1161520:intron
AAAGAAGAAGGGATGAGGTA+TGG 0.459773 7_4:-51731564 None:intergenic
CAGCTAACTCTATCTGTGTC+TGG 0.459791 7_4:-51732118 None:intergenic
AGAAAGATGGAGTTCCCTAA+TGG 0.471693 7_4:+51732044 Msa1161520:CDS
TGCTGCTTTGGATAAGTCAC+TGG 0.477277 7_4:-51731597 None:intergenic
GAATCATAAAGGAGCTATGA+TGG 0.481422 7_4:+51731995 Msa1161520:intron
AGCCTGGGAAGCTTTGCCCT+TGG 0.483988 7_4:-51732526 None:intergenic
GATAAAGTTGGGATGAGGTA+TGG 0.498354 7_4:-51731539 None:intergenic
CTCTTCAGCATTGTGCCAAA+GGG 0.501801 7_4:-51731784 None:intergenic
TCTTTCTCAAACTTAAGAAA+CGG 0.509201 7_4:-51732068 None:intergenic
TGGCATCATTAGACCCTTGA+GGG 0.509241 7_4:-51732495 None:intergenic
AGGAAAGAAGAAGATGAAGA+TGG 0.510141 7_4:-51731504 None:intergenic
AATCGTCAAGGATCACATGC+TGG 0.512901 7_4:+51732640 Msa1161520:three_prime_UTR
GAGGTATGGGTGATAAAGTT+GGG 0.514731 7_4:-51731550 None:intergenic
AAGAAGAAGGGATGAGGTAT+GGG 0.517035 7_4:-51731563 None:intergenic
TTCTGAGGTAGCATTAAGCC+TGG 0.518926 7_4:-51732542 None:intergenic
GCTCTTCAGCATTGTGCCAA+AGG 0.529216 7_4:-51731785 None:intergenic
CAGCATATTCTCCCATAAGT+TGG 0.529568 7_4:-51732411 None:intergenic
GGATTGAAACCTAAAGAAGA+AGG 0.535314 7_4:-51731576 None:intergenic
GTATGAAACAACAAAGAGCT+TGG 0.535551 7_4:-51731643 None:intergenic
ACTATGTAAATTGAGAAAGA+TGG 0.536572 7_4:+51732031 Msa1161520:CDS
GGAATACTGCAATGTGCAGT+TGG 0.536785 7_4:+51731828 Msa1161520:CDS
GAAGAGCCATAGATGATGAA+TGG 0.538579 7_4:-51731479 None:intergenic
CTTATGGGAGAATATGCTGC+AGG 0.540524 7_4:+51732415 Msa1161520:CDS
TGATGATGTTTGTGTTGCAA+TGG 0.550109 7_4:+51732369 Msa1161520:CDS
ATCGTCAAGGATCACATGCT+GGG 0.566237 7_4:+51732641 Msa1161520:three_prime_UTR
TGGGTGATAAAGTTGGGATG+AGG 0.573129 7_4:-51731544 None:intergenic
TGATGCCACTGAAGCTCCAA+GGG 0.576853 7_4:+51732510 Msa1161520:CDS
ACATTGTGTTCTGCCCTCAA+GGG 0.584678 7_4:+51732482 Msa1161520:CDS
ATGATGCCACTGAAGCTCCA+AGG 0.592193 7_4:+51732509 Msa1161520:CDS
AACCTAAAGAAGAAGGGATG+AGG 0.592437 7_4:-51731569 None:intergenic
ATATTCTCCCATAAGTTGGT+AGG 0.594558 7_4:-51732407 None:intergenic
GATTGAAACCTAAAGAAGAA+GGG 0.606556 7_4:-51731575 None:intergenic
AGGAGCTATGATGGAGTTAG+GGG 0.608325 7_4:+51732004 Msa1161520:CDS
AGCTATGATGGAGTTAGGGG+AGG 0.617037 7_4:+51732007 Msa1161520:CDS
GTGGCATCATTAGACCCTTG+AGG 0.624422 7_4:-51732496 None:intergenic
ACACAAAGTTTAGTATATCG+TGG 0.625305 7_4:-51732712 None:intergenic
GCTATGATGGAGTTAGGGGA+GGG 0.630986 7_4:+51732008 Msa1161520:CDS
ATATGCTACAAGATGTTCTG+AGG 0.636965 7_4:-51732557 None:intergenic
TCTGAGGTAGCATTAAGCCT+GGG 0.648996 7_4:-51732541 None:intergenic
TTATGGGAGAATATGCTGCA+GGG 0.653319 7_4:+51732416 Msa1161520:CDS
CCTACTGTATAAAATCGTCA+AGG 0.659910 7_4:+51732628 Msa1161520:three_prime_UTR
GCAGTGACTCTATTTAATGG+TGG 0.669652 7_4:+51731729 Msa1161520:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAAAAAAAATTATATTTATC+AGG + chr7_4:51732749-51732768 Msa1161520:three_prime_UTR 10.0%
!! CAAAAAAAATTATATTTATC+AGG + chr7_4:51732749-51732768 Msa1161520:three_prime_UTR 10.0%
!!! AGTTTTCATTTTATTTTTAG+TGG + chr7_4:51731902-51731921 Msa1161520:intron 15.0%
!! AAAAAATTATATTTATCAGG+AGG + chr7_4:51732752-51732771 Msa1161520:three_prime_UTR 15.0%
!!! AGTTTTCATTTTATTTTTAG+TGG + chr7_4:51731902-51731921 Msa1161520:intron 15.0%
!! AAAAAATTATATTTATCAGG+AGG + chr7_4:51732752-51732771 Msa1161520:three_prime_UTR 15.0%
!! ATAAAAAATGAACGGAAATA+TGG + chr7_4:51731432-51731451 Msa1161520:five_prime_UTR 20.0%
!!! TCATTTTATTTTTAGTGGTA+TGG + chr7_4:51731907-51731926 Msa1161520:intron 20.0%
!! ATATGATACATAACATTTCA+AGG - chr7_4:51732161-51732180 None:intergenic 20.0%
!! GAATTAAATCTAATCTTGAA+TGG - chr7_4:51732287-51732306 None:intergenic 20.0%
!! ATTCACAAATGTTATATGAT+CGG + chr7_4:51732303-51732322 Msa1161520:intron 20.0%
!! ATCTAAATCTACAAAATCAA+TGG - chr7_4:51732805-51732824 None:intergenic 20.0%
!! ATAAAAAATGAACGGAAATA+TGG + chr7_4:51731432-51731451 Msa1161520:five_prime_UTR 20.0%
!!! TCATTTTATTTTTAGTGGTA+TGG + chr7_4:51731907-51731926 Msa1161520:intron 20.0%
!! ATATGATACATAACATTTCA+AGG - chr7_4:51732161-51732180 None:intergenic 20.0%
!! GAATTAAATCTAATCTTGAA+TGG - chr7_4:51732287-51732306 None:intergenic 20.0%
!! ATTCACAAATGTTATATGAT+CGG + chr7_4:51732303-51732322 Msa1161520:intron 20.0%
!! ATCTAAATCTACAAAATCAA+TGG - chr7_4:51732805-51732824 None:intergenic 20.0%
!!! ATTTCCGTTCATTTTTTATG+TGG - chr7_4:51731431-51731450 None:intergenic 25.0%
! TATTGAAAACCTGATTGAAT+AGG - chr7_4:51731863-51731882 None:intergenic 25.0%
! TGCTGAATATAGAATCATAA+AGG + chr7_4:51731984-51732003 Msa1161520:intron 25.0%
! ACTATGTAAATTGAGAAAGA+TGG + chr7_4:51732031-51732050 Msa1161520:CDS 25.0%
! TCTTTCTCAAACTTAAGAAA+CGG - chr7_4:51732071-51732090 None:intergenic 25.0%
!!! TACTGAGTTCAATTTTGATT+CGG - chr7_4:51732208-51732227 None:intergenic 25.0%
!!! AAATGTTATATGATCGGTTT+TGG + chr7_4:51732309-51732328 Msa1161520:intron 25.0%
!!! TTTTTAACTTGAATTTGAGC+AGG + chr7_4:51732343-51732362 Msa1161520:intron 25.0%
! CAAAATCAATGGAAAATGTT+TGG - chr7_4:51732794-51732813 None:intergenic 25.0%
!!! ATTTCCGTTCATTTTTTATG+TGG - chr7_4:51731431-51731450 None:intergenic 25.0%
! TATTGAAAACCTGATTGAAT+AGG - chr7_4:51731863-51731882 None:intergenic 25.0%
! TGCTGAATATAGAATCATAA+AGG + chr7_4:51731984-51732003 Msa1161520:intron 25.0%
! ACTATGTAAATTGAGAAAGA+TGG + chr7_4:51732031-51732050 Msa1161520:CDS 25.0%
! TCTTTCTCAAACTTAAGAAA+CGG - chr7_4:51732071-51732090 None:intergenic 25.0%
!!! TACTGAGTTCAATTTTGATT+CGG - chr7_4:51732208-51732227 None:intergenic 25.0%
!!! AAATGTTATATGATCGGTTT+TGG + chr7_4:51732309-51732328 Msa1161520:intron 25.0%
!!! TTTTTAACTTGAATTTGAGC+AGG + chr7_4:51732343-51732362 Msa1161520:intron 25.0%
! CAAAATCAATGGAAAATGTT+TGG - chr7_4:51732794-51732813 None:intergenic 25.0%
!!! GTTCATTTTTTATGTGGTTG+GGG - chr7_4:51731425-51731444 None:intergenic 30.0%
!!! CGTTCATTTTTTATGTGGTT+GGG - chr7_4:51731426-51731445 None:intergenic 30.0%
CCAACCACATAAAAAATGAA+CGG + chr7_4:51731424-51731443 Msa1161520:five_prime_UTR 30.0%
GATTGAAACCTAAAGAAGAA+GGG - chr7_4:51731578-51731597 None:intergenic 30.0%
!!! AGTTGTTGCTTTTGAAATTC+AGG - chr7_4:51731623-51731642 None:intergenic 30.0%
ATTTCATCACCTATTCAATC+AGG + chr7_4:51731851-51731870 Msa1161520:CDS 30.0%
!!! TTTAGTGGTATGGTTTTGTT+TGG + chr7_4:51731917-51731936 Msa1161520:intron 30.0%
! GAAAGATATTTCAGCAGTTT+TGG + chr7_4:51732085-51732104 Msa1161520:CDS 30.0%
GATACATAACATTTCAAGGT+TGG - chr7_4:51732157-51732176 None:intergenic 30.0%
ATCTAATCTTGAATGGTAAC+AGG - chr7_4:51732280-51732299 None:intergenic 30.0%
ACACAAAGTTTAGTATATCG+TGG - chr7_4:51732715-51732734 None:intergenic 30.0%
GTGACAAACAAGAAAAAGAA+AGG - chr7_4:51731393-51731412 None:intergenic 30.0%
!!! GTTCATTTTTTATGTGGTTG+GGG - chr7_4:51731425-51731444 None:intergenic 30.0%
!!! CGTTCATTTTTTATGTGGTT+GGG - chr7_4:51731426-51731445 None:intergenic 30.0%
CCAACCACATAAAAAATGAA+CGG + chr7_4:51731424-51731443 Msa1161520:five_prime_UTR 30.0%
GATTGAAACCTAAAGAAGAA+GGG - chr7_4:51731578-51731597 None:intergenic 30.0%
!!! AGTTGTTGCTTTTGAAATTC+AGG - chr7_4:51731623-51731642 None:intergenic 30.0%
ATTTCATCACCTATTCAATC+AGG + chr7_4:51731851-51731870 Msa1161520:CDS 30.0%
!!! TTTAGTGGTATGGTTTTGTT+TGG + chr7_4:51731917-51731936 Msa1161520:intron 30.0%
! GAAAGATATTTCAGCAGTTT+TGG + chr7_4:51732085-51732104 Msa1161520:CDS 30.0%
GATACATAACATTTCAAGGT+TGG - chr7_4:51732157-51732176 None:intergenic 30.0%
ATCTAATCTTGAATGGTAAC+AGG - chr7_4:51732280-51732299 None:intergenic 30.0%
ACACAAAGTTTAGTATATCG+TGG - chr7_4:51732715-51732734 None:intergenic 30.0%
!!! CCGTTCATTTTTTATGTGGT+TGG - chr7_4:51731427-51731446 None:intergenic 35.0%
! ATGGTGTGAAAAGTTTTCTC+TGG - chr7_4:51731463-51731482 None:intergenic 35.0%
TTCACACCATTCATCATCTA+TGG + chr7_4:51731473-51731492 Msa1161520:exon 35.0%
AGGAAAGAAGAAGATGAAGA+TGG - chr7_4:51731507-51731526 None:intergenic 35.0%
!! AGGTATGGTAGATAGTTTTG+AGG - chr7_4:51731527-51731546 None:intergenic 35.0%
GGATTGAAACCTAAAGAAGA+AGG - chr7_4:51731579-51731598 None:intergenic 35.0%
GTATGAAACAACAAAGAGCT+TGG - chr7_4:51731646-51731665 None:intergenic 35.0%
!! AGCTCTTTGTTGTTTCATAC+AGG + chr7_4:51731646-51731665 Msa1161520:CDS 35.0%
GAAGCAGTGACTCTATTTAA+TGG + chr7_4:51731726-51731745 Msa1161520:CDS 35.0%
CCATGAATTAGTGTTCTTGA+TGG - chr7_4:51731810-51731829 None:intergenic 35.0%
CCATCAAGAACACTAATTCA+TGG + chr7_4:51731807-51731826 Msa1161520:CDS 35.0%
GAATCATAAAGGAGCTATGA+TGG + chr7_4:51731995-51732014 Msa1161520:intron 35.0%
ACTTAAGAAACGGTCCATTA+GGG - chr7_4:51732061-51732080 None:intergenic 35.0%
AACTTAAGAAACGGTCCATT+AGG - chr7_4:51732062-51732081 None:intergenic 35.0%
! TGATGATGTTTGTGTTGCAA+TGG + chr7_4:51732369-51732388 Msa1161520:CDS 35.0%
AGAAAGATCCTACCAACTTA+TGG + chr7_4:51732399-51732418 Msa1161520:CDS 35.0%
GAAAGATCCTACCAACTTAT+GGG + chr7_4:51732400-51732419 Msa1161520:CDS 35.0%
!! ATATTCTCCCATAAGTTGGT+AGG - chr7_4:51732410-51732429 None:intergenic 35.0%
ATATGCTACAAGATGTTCTG+AGG - chr7_4:51732560-51732579 None:intergenic 35.0%
! CCTTGACGATTTTATACAGT+AGG - chr7_4:51732631-51732650 None:intergenic 35.0%
CCTACTGTATAAAATCGTCA+AGG + chr7_4:51732628-51732647 Msa1161520:three_prime_UTR 35.0%
!!! CCGTTCATTTTTTATGTGGT+TGG - chr7_4:51731427-51731446 None:intergenic 35.0%
! ATGGTGTGAAAAGTTTTCTC+TGG - chr7_4:51731463-51731482 None:intergenic 35.0%
TTCACACCATTCATCATCTA+TGG + chr7_4:51731473-51731492 Msa1161520:exon 35.0%
AGGAAAGAAGAAGATGAAGA+TGG - chr7_4:51731507-51731526 None:intergenic 35.0%
!! AGGTATGGTAGATAGTTTTG+AGG - chr7_4:51731527-51731546 None:intergenic 35.0%
GGATTGAAACCTAAAGAAGA+AGG - chr7_4:51731579-51731598 None:intergenic 35.0%
GTATGAAACAACAAAGAGCT+TGG - chr7_4:51731646-51731665 None:intergenic 35.0%
!! AGCTCTTTGTTGTTTCATAC+AGG + chr7_4:51731646-51731665 Msa1161520:CDS 35.0%
GAAGCAGTGACTCTATTTAA+TGG + chr7_4:51731726-51731745 Msa1161520:CDS 35.0%
CCATGAATTAGTGTTCTTGA+TGG - chr7_4:51731810-51731829 None:intergenic 35.0%
CCATCAAGAACACTAATTCA+TGG + chr7_4:51731807-51731826 Msa1161520:CDS 35.0%
GAATCATAAAGGAGCTATGA+TGG + chr7_4:51731995-51732014 Msa1161520:intron 35.0%
ACTTAAGAAACGGTCCATTA+GGG - chr7_4:51732061-51732080 None:intergenic 35.0%
AACTTAAGAAACGGTCCATT+AGG - chr7_4:51732062-51732081 None:intergenic 35.0%
! TGATGATGTTTGTGTTGCAA+TGG + chr7_4:51732369-51732388 Msa1161520:CDS 35.0%
AGAAAGATCCTACCAACTTA+TGG + chr7_4:51732399-51732418 Msa1161520:CDS 35.0%
GAAAGATCCTACCAACTTAT+GGG + chr7_4:51732400-51732419 Msa1161520:CDS 35.0%
!! ATATTCTCCCATAAGTTGGT+AGG - chr7_4:51732410-51732429 None:intergenic 35.0%
ATATGCTACAAGATGTTCTG+AGG - chr7_4:51732560-51732579 None:intergenic 35.0%
! CCTTGACGATTTTATACAGT+AGG - chr7_4:51732631-51732650 None:intergenic 35.0%
CCTACTGTATAAAATCGTCA+AGG + chr7_4:51732628-51732647 Msa1161520:three_prime_UTR 35.0%
!!! CATTTTTTATGTGGTTGGGG+TGG - chr7_4:51731422-51731441 None:intergenic 40.0%
GAAGAGCCATAGATGATGAA+TGG - chr7_4:51731482-51731501 None:intergenic 40.0%
GATAAAGTTGGGATGAGGTA+TGG - chr7_4:51731542-51731561 None:intergenic 40.0%
GAGGTATGGGTGATAAAGTT+GGG - chr7_4:51731553-51731572 None:intergenic 40.0%
TGAGGTATGGGTGATAAAGT+TGG - chr7_4:51731554-51731573 None:intergenic 40.0%
AAGAAGAAGGGATGAGGTAT+GGG - chr7_4:51731566-51731585 None:intergenic 40.0%
AAAGAAGAAGGGATGAGGTA+TGG - chr7_4:51731567-51731586 None:intergenic 40.0%
TACCTCATCCCTTCTTCTTT+AGG + chr7_4:51731567-51731586 Msa1161520:CDS 40.0%
AACCTAAAGAAGAAGGGATG+AGG - chr7_4:51731572-51731591 None:intergenic 40.0%
!! TTGAAATTCAGGTGCTGCTT+TGG - chr7_4:51731612-51731631 None:intergenic 40.0%
GCAGTGACTCTATTTAATGG+TGG + chr7_4:51731729-51731748 Msa1161520:CDS 40.0%
ATGACTATCTTGAGTCCCTT+TGG + chr7_4:51731769-51731788 Msa1161520:CDS 40.0%
! AAAGGAGCTATGATGGAGTT+AGG + chr7_4:51732002-51732021 Msa1161520:CDS 40.0%
! AAGGAGCTATGATGGAGTTA+GGG + chr7_4:51732003-51732022 Msa1161520:CDS 40.0%
AGAAAGATGGAGTTCCCTAA+TGG + chr7_4:51732044-51732063 Msa1161520:CDS 40.0%
CAGCATATTCTCCCATAAGT+TGG - chr7_4:51732414-51732433 None:intergenic 40.0%
TTATGGGAGAATATGCTGCA+GGG + chr7_4:51732416-51732435 Msa1161520:CDS 40.0%
! CGCGTATATGATCTAGAACT+TGG + chr7_4:51732442-51732461 Msa1161520:CDS 40.0%
CTTGAGCAAGCATCTTTGAA+TGG + chr7_4:51732673-51732692 Msa1161520:three_prime_UTR 40.0%
TATATCGTGGCTACTACTTC+AGG - chr7_4:51732702-51732721 None:intergenic 40.0%
!!! CATTTTTTATGTGGTTGGGG+TGG - chr7_4:51731422-51731441 None:intergenic 40.0%
GAAGAGCCATAGATGATGAA+TGG - chr7_4:51731482-51731501 None:intergenic 40.0%
GATAAAGTTGGGATGAGGTA+TGG - chr7_4:51731542-51731561 None:intergenic 40.0%
GAGGTATGGGTGATAAAGTT+GGG - chr7_4:51731553-51731572 None:intergenic 40.0%
TGAGGTATGGGTGATAAAGT+TGG - chr7_4:51731554-51731573 None:intergenic 40.0%
AAGAAGAAGGGATGAGGTAT+GGG - chr7_4:51731566-51731585 None:intergenic 40.0%
AAAGAAGAAGGGATGAGGTA+TGG - chr7_4:51731567-51731586 None:intergenic 40.0%
TACCTCATCCCTTCTTCTTT+AGG + chr7_4:51731567-51731586 Msa1161520:CDS 40.0%
AACCTAAAGAAGAAGGGATG+AGG - chr7_4:51731572-51731591 None:intergenic 40.0%
!! TTGAAATTCAGGTGCTGCTT+TGG - chr7_4:51731612-51731631 None:intergenic 40.0%
GCAGTGACTCTATTTAATGG+TGG + chr7_4:51731729-51731748 Msa1161520:CDS 40.0%
ATGACTATCTTGAGTCCCTT+TGG + chr7_4:51731769-51731788 Msa1161520:CDS 40.0%
! AAAGGAGCTATGATGGAGTT+AGG + chr7_4:51732002-51732021 Msa1161520:CDS 40.0%
! AAGGAGCTATGATGGAGTTA+GGG + chr7_4:51732003-51732022 Msa1161520:CDS 40.0%
AGAAAGATGGAGTTCCCTAA+TGG + chr7_4:51732044-51732063 Msa1161520:CDS 40.0%
CAGCATATTCTCCCATAAGT+TGG - chr7_4:51732414-51732433 None:intergenic 40.0%
TTATGGGAGAATATGCTGCA+GGG + chr7_4:51732416-51732435 Msa1161520:CDS 40.0%
! CGCGTATATGATCTAGAACT+TGG + chr7_4:51732442-51732461 Msa1161520:CDS 40.0%
CTTGAGCAAGCATCTTTGAA+TGG + chr7_4:51732673-51732692 Msa1161520:three_prime_UTR 40.0%
TATATCGTGGCTACTACTTC+AGG - chr7_4:51732702-51732721 None:intergenic 40.0%
TGGGTGATAAAGTTGGGATG+AGG - chr7_4:51731547-51731566 None:intergenic 45.0%
!! TGCTGCTTTGGATAAGTCAC+TGG - chr7_4:51731600-51731619 None:intergenic 45.0%
CTCTTCAGCATTGTGCCAAA+GGG - chr7_4:51731787-51731806 None:intergenic 45.0%
GGAATACTGCAATGTGCAGT+TGG + chr7_4:51731828-51731847 Msa1161520:CDS 45.0%
! AGGAGCTATGATGGAGTTAG+GGG + chr7_4:51732004-51732023 Msa1161520:CDS 45.0%
CAGCTAACTCTATCTGTGTC+TGG - chr7_4:51732121-51732140 None:intergenic 45.0%
CTTATGGGAGAATATGCTGC+AGG + chr7_4:51732415-51732434 Msa1161520:CDS 45.0%
TACATTGTGTTCTGCCCTCA+AGG + chr7_4:51732481-51732500 Msa1161520:CDS 45.0%
ACATTGTGTTCTGCCCTCAA+GGG + chr7_4:51732482-51732501 Msa1161520:CDS 45.0%
TGGCATCATTAGACCCTTGA+GGG - chr7_4:51732498-51732517 None:intergenic 45.0%
! TCTGAGGTAGCATTAAGCCT+GGG - chr7_4:51732544-51732563 None:intergenic 45.0%
!! TTCTGAGGTAGCATTAAGCC+TGG - chr7_4:51732545-51732564 None:intergenic 45.0%
AATCGTCAAGGATCACATGC+TGG + chr7_4:51732640-51732659 Msa1161520:three_prime_UTR 45.0%
ATCGTCAAGGATCACATGCT+GGG + chr7_4:51732641-51732660 Msa1161520:three_prime_UTR 45.0%
TGGGTGATAAAGTTGGGATG+AGG - chr7_4:51731547-51731566 None:intergenic 45.0%
!! TGCTGCTTTGGATAAGTCAC+TGG - chr7_4:51731600-51731619 None:intergenic 45.0%
CTCTTCAGCATTGTGCCAAA+GGG - chr7_4:51731787-51731806 None:intergenic 45.0%
GGAATACTGCAATGTGCAGT+TGG + chr7_4:51731828-51731847 Msa1161520:CDS 45.0%
! AGGAGCTATGATGGAGTTAG+GGG + chr7_4:51732004-51732023 Msa1161520:CDS 45.0%
CAGCTAACTCTATCTGTGTC+TGG - chr7_4:51732121-51732140 None:intergenic 45.0%
CTTATGGGAGAATATGCTGC+AGG + chr7_4:51732415-51732434 Msa1161520:CDS 45.0%
TACATTGTGTTCTGCCCTCA+AGG + chr7_4:51732481-51732500 Msa1161520:CDS 45.0%
ACATTGTGTTCTGCCCTCAA+GGG + chr7_4:51732482-51732501 Msa1161520:CDS 45.0%
TGGCATCATTAGACCCTTGA+GGG - chr7_4:51732498-51732517 None:intergenic 45.0%
! TCTGAGGTAGCATTAAGCCT+GGG - chr7_4:51732544-51732563 None:intergenic 45.0%
!! TTCTGAGGTAGCATTAAGCC+TGG - chr7_4:51732545-51732564 None:intergenic 45.0%
AATCGTCAAGGATCACATGC+TGG + chr7_4:51732640-51732659 Msa1161520:three_prime_UTR 45.0%
ATCGTCAAGGATCACATGCT+GGG + chr7_4:51732641-51732660 Msa1161520:three_prime_UTR 45.0%
GCTCTTCAGCATTGTGCCAA+AGG - chr7_4:51731788-51731807 None:intergenic 50.0%
! AGCTATGATGGAGTTAGGGG+AGG + chr7_4:51732007-51732026 Msa1161520:CDS 50.0%
! GCTATGATGGAGTTAGGGGA+GGG + chr7_4:51732008-51732027 Msa1161520:CDS 50.0%
GTGGCATCATTAGACCCTTG+AGG - chr7_4:51732499-51732518 None:intergenic 50.0%
ATGATGCCACTGAAGCTCCA+AGG + chr7_4:51732509-51732528 Msa1161520:CDS 50.0%
TGATGCCACTGAAGCTCCAA+GGG + chr7_4:51732510-51732529 Msa1161520:CDS 50.0%
GCTCTTCAGCATTGTGCCAA+AGG - chr7_4:51731788-51731807 None:intergenic 50.0%
! AGCTATGATGGAGTTAGGGG+AGG + chr7_4:51732007-51732026 Msa1161520:CDS 50.0%
! GCTATGATGGAGTTAGGGGA+GGG + chr7_4:51732008-51732027 Msa1161520:CDS 50.0%
GTGGCATCATTAGACCCTTG+AGG - chr7_4:51732499-51732518 None:intergenic 50.0%
ATGATGCCACTGAAGCTCCA+AGG + chr7_4:51732509-51732528 Msa1161520:CDS 50.0%
TGATGCCACTGAAGCTCCAA+GGG + chr7_4:51732510-51732529 Msa1161520:CDS 50.0%
CTTTGCCCTTGGAGCTTCAG+TGG - chr7_4:51732518-51732537 None:intergenic 55.0%
CTTTGCCCTTGGAGCTTCAG+TGG - chr7_4:51732518-51732537 None:intergenic 55.0%
CTCCAAGGGCAAAGCTTCCC+AGG + chr7_4:51732524-51732543 Msa1161520:CDS 60.0%
AGCCTGGGAAGCTTTGCCCT+TGG - chr7_4:51732529-51732548 None:intergenic 60.0%
CTCCAAGGGCAAAGCTTCCC+AGG + chr7_4:51732524-51732543 Msa1161520:CDS 60.0%
AGCCTGGGAAGCTTTGCCCT+TGG - chr7_4:51732529-51732548 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 51731391 51732868 51731391 ID=Msa1161520;Name=Msa1161520
chr7_4 mRNA 51731391 51732868 51731391 ID=Msa1161520-mRNA-1;Parent=Msa1161520;Name=Msa1161520-mRNA-1;_AED=0.08;_eAED=0.08;_QI=101|1|1|1|1|1|3|277|251
chr7_4 exon 51731391 51731872 51731391 ID=Msa1161520-mRNA-1:exon:14729;Parent=Msa1161520-mRNA-1
chr7_4 exon 51731996 51732143 51731996 ID=Msa1161520-mRNA-1:exon:14730;Parent=Msa1161520-mRNA-1
chr7_4 exon 51732365 51732868 51732365 ID=Msa1161520-mRNA-1:exon:14731;Parent=Msa1161520-mRNA-1
chr7_4 five_prime_UTR 51731391 51731491 51731391 ID=Msa1161520-mRNA-1:five_prime_utr;Parent=Msa1161520-mRNA-1
chr7_4 CDS 51731492 51731872 51731492 ID=Msa1161520-mRNA-1:cds;Parent=Msa1161520-mRNA-1
chr7_4 CDS 51731996 51732143 51731996 ID=Msa1161520-mRNA-1:cds;Parent=Msa1161520-mRNA-1
chr7_4 CDS 51732365 51732591 51732365 ID=Msa1161520-mRNA-1:cds;Parent=Msa1161520-mRNA-1
chr7_4 three_prime_UTR 51732592 51732868 51732592 ID=Msa1161520-mRNA-1:three_prime_utr;Parent=Msa1161520-mRNA-1
Gene Sequence

>Msa1161520

ATGGCTCTTCTTCCATCTTCATCTTCTTCTTTCCTCAAAACTATCTACCATACCTCATCCCAACTTTATCACCCATACCTCATCCCTTCTTCTTTAGGTTTCAATCCAGTGACTTATCCAAAGCAGCACCTGAATTTCAAAAGCAACAACTCCAAGCTCTTTGTTGTTTCATACAGGTATTTCACTAAAGAAGAAGACGAAGAAGACGACGAAGAAGAAGAGCACAACTTTGATGAAGCAGTGACTCTATTTAATGGTGGAGAGTACTACAAATGTCATGACTATCTTGAGTCCCTTTGGCACAATGCTGAAGAGCCATCAAGAACACTAATTCATGGAATACTGCAATGTGCAGTTGGATTTCATCACCTATTCAATCAGAATCATAAAGGAGCTATGATGGAGTTAGGGGAGGGACTATGTAAATTGAGAAAGATGGAGTTCCCTAATGGACCGTTTCTTAAGTTTGAGAAAGATATTTCAGCAGTTTTGGAATTTATCTACCAGACACAGATAGAGTTAGCTGCATGTAGTGATGATGTTTGTGTTGCAATGGATCAATCAGAAAGATCCTACCAACTTATGGGAGAATATGCTGCAGGGAAGCGCGTATATGATCTAGAACTTGGTCGTGATGCATCAGTGTACATTGTGTTCTGCCCTCAAGGGTCTAATGATGCCACTGAAGCTCCAAGGGCAAAGCTTCCCAGGCTTAATGCTACCTCAGAACATCTTGTAGCATATGAATACAAGTAA

Protein sequence

>Msa1161520

MALLPSSSSSFLKTIYHTSSQLYHPYLIPSSLGFNPVTYPKQHLNFKSNNSKLFVVSYRYFTKEEDEEDDEEEEHNFDEAVTLFNGGEYYKCHDYLESLWHNAEEPSRTLIHGILQCAVGFHHLFNQNHKGAMMELGEGLCKLRKMEFPNGPFLKFEKDISAVLEFIYQTQIELAACSDDVCVAMDQSERSYQLMGEYAAGKRVYDLELGRDASVYIVFCPQGSNDATEAPRAKLPRLNATSEHLVAYEYK*