AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0070090


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0070090 MtrunA17_Chr1g0173891 95.074 203 10 0 100 302 170 372 5.52e-140 399
Msa0070090 MtrunA17_Chr1g0173881 92.381 105 8 0 1 105 1 105 8.80e-53 170
Msa0070090 MtrunA17_Chr1g0186021 45.977 174 91 3 83 254 296 468 3.91e-41 149
Msa0070090 MtrunA17_Chr8g0380251 46.667 150 80 0 107 256 295 444 8.42e-39 142
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0070090 AT3G57680.3 75.377 199 48 1 105 302 172 370 1.25e-106 315
Msa0070090 AT3G57680.2 75.377 199 48 1 105 302 172 370 1.25e-106 315
Msa0070090 AT3G57680.1 75.377 199 48 1 105 302 321 519 7.51e-105 315
Msa0070090 AT4G17740.2 43.678 174 95 3 83 254 298 470 1.27e-38 142
Msa0070090 AT4G17740.1 43.678 174 95 3 83 254 308 480 1.79e-38 142
Msa0070090 AT5G46390.2 44.667 150 83 0 107 256 319 468 3.59e-36 135

Find 76 sgRNAs with CRISPR-Local

Find 189 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAAACAAACCTACCAAATT+TGG 0.155558 1_2:-39723994 None:intergenic
GAAGAGGAAGGTGTCGTTTA+AGG 0.189094 1_2:+39724059 Msa0070090:CDS
TAATGCATGAATCTGCTTCT+AGG 0.234485 1_2:-39726424 None:intergenic
TGAAGAGAAGGAGGTGAATA+AGG 0.261653 1_2:+39724083 Msa0070090:CDS
TTCTTTACTTTGATTAATCT+TGG 0.277428 1_2:-39723907 None:intergenic
TAAAGTACCAAAACCAAATT+TGG 0.279525 1_2:+39723981 Msa0070090:CDS
AAACCTACCAAATTTGGTTT+TGG 0.289069 1_2:-39723988 None:intergenic
TGAGATTGAAGTCTTATCTT+TGG 0.310288 1_2:-39726399 None:intergenic
GTTTGTTTCCTCGTAGGTTA+TGG 0.324357 1_2:+39724007 Msa0070090:CDS
AGAAGCAGATTCATGCATTA+TGG 0.353453 1_2:+39726427 Msa0070090:CDS
TGACATGCGAAATGCTATTC+AGG 0.354095 1_2:+39724900 Msa0070090:CDS
TCTGTTGTGCACTGCACGTC+TGG 0.372440 1_2:-39726347 None:intergenic
CTTGTGGGGAACAAAACATT+TGG 0.382361 1_2:+39725788 Msa0070090:CDS
ACCTCAGGTGCGCGTGAAAC+GGG 0.383496 1_2:-39724234 None:intergenic
TCTTTGGTTGATAGTTCCTT+TGG 0.384951 1_2:-39726383 None:intergenic
TGTTCAAGAAACAGTCCCTT+TGG 0.389416 1_2:-39726480 None:intergenic
CGTGATGCCCATGTTGTTGT+TGG 0.405184 1_2:-39724036 None:intergenic
GGTGAATAAGGTAGTGGTAG+TGG 0.419882 1_2:+39724095 Msa0070090:CDS
GACCTCAGGTGCGCGTGAAA+CGG 0.420484 1_2:-39724235 None:intergenic
ATTTGGAAAAGGAAAGATTC+AGG 0.435352 1_2:+39725805 Msa0070090:CDS
GTTGCTCAGATGTGGTTAGA+TGG 0.450686 1_2:+39725103 Msa0070090:CDS
AAACATGTCACCCATCAATA+TGG 0.451593 1_2:+39725162 Msa0070090:CDS
AACGGTCGAGCTATTCTTGT+GGG 0.453441 1_2:+39725773 Msa0070090:CDS
GTCGTTTAAGGTTGAAGAGA+AGG 0.466163 1_2:+39724071 Msa0070090:CDS
AATGCATGAATCTGCTTCTA+GGG 0.476986 1_2:-39726423 None:intergenic
GTAATGTATATATAAAATAG+TGG 0.478233 1_2:+39726592 Msa0070090:three_prime_UTR
GGGAACAAAACATTTGGAAA+AGG 0.480082 1_2:+39725794 Msa0070090:CDS
GAAGGAGGTGAATAAGGTAG+TGG 0.501122 1_2:+39724089 Msa0070090:CDS
CAGGGTGGTTTGGTAAAAGC+AGG 0.508692 1_2:+39725073 Msa0070090:intron
TGAACATGAGTTGGATATGA+AGG 0.513377 1_2:+39726454 Msa0070090:CDS
CGACCTGATCTATGTCATGA+AGG 0.514048 1_2:-39726316 None:intergenic
TTCATGACATAGATCAGGTC+GGG 0.516139 1_2:+39726318 Msa0070090:CDS
TTTCAATATTGAAAGTTGAA+AGG 0.517350 1_2:+39726529 Msa0070090:three_prime_UTR
ATGGCCATTGACCATATTGA+TGG 0.517855 1_2:-39725173 None:intergenic
TCACCCATCAATATGGTCAA+TGG 0.520092 1_2:+39725169 Msa0070090:CDS
TGATCTATGTCATGAAGGGC+TGG 0.525259 1_2:-39726311 None:intergenic
AAACGGGAAAAGCAACGGTA+AGG 0.529370 1_2:-39724218 None:intergenic
TATTGAATGATATATACAAT+CGG 0.529881 1_2:-39726617 None:intergenic
TATGGTAGCTGAACATGAGT+TGG 0.531686 1_2:+39726445 Msa0070090:CDS
TCCCGTTTCACGCGCACCTG+AGG 0.532170 1_2:+39724233 Msa0070090:CDS
CGCCCCAGCTAAAATCTCGC+TGG 0.533641 1_2:-39725741 None:intergenic
AGCCCTTCATGACATAGATC+AGG 0.537489 1_2:+39726313 Msa0070090:CDS
GTACTCACAATTACTACAAG+TGG 0.543132 1_2:-39725211 None:intergenic
TGGTAGGTTTGTTTCCTCGT+AGG 0.548540 1_2:+39724001 Msa0070090:CDS
GTACCAAAACCAAATTTGGT+AGG 0.549119 1_2:+39723985 Msa0070090:CDS
GCCTTGATGTTGCTCAGATG+TGG 0.555679 1_2:+39725095 Msa0070090:CDS
ACTCATACATACTTGATCTA+CGG 0.556612 1_2:+39724944 Msa0070090:CDS
GCTGGGGCGTTACATGATAA+CGG 0.558510 1_2:+39725755 Msa0070090:CDS
GTGAATACGATTGATAGAGA+TGG 0.558990 1_2:+39725139 Msa0070090:CDS
CAACATGGGCATCACGGAAG+AGG 0.568371 1_2:+39724043 Msa0070090:CDS
GGTTACTACCAACAACAACA+TGG 0.570072 1_2:+39724028 Msa0070090:CDS
AGTGTCACTCAGCTTCATGA+TGG 0.570563 1_2:+39726251 Msa0070090:CDS
AGGGATTGAGAGAGAGCTGT+TGG 0.579896 1_2:-39724198 None:intergenic
GTTTAAGGTTGAAGAGAAGG+AGG 0.582306 1_2:+39724074 Msa0070090:CDS
CAACAACAACATGGGCATCA+CGG 0.583305 1_2:+39724037 Msa0070090:CDS
TGGATATGAAGGATTCCAAA+GGG 0.591184 1_2:+39726465 Msa0070090:CDS
AACGGGAAAAGCAACGGTAA+GGG 0.591378 1_2:-39724217 None:intergenic
GTGGATCATGTGTTATAGCA+TGG 0.598447 1_2:-39725192 None:intergenic
ATCAGCCCTCTTTGTTACAG+TGG 0.602610 1_2:+39726274 Msa0070090:CDS
AATAAGGTAGTGGTAGTGGA+AGG 0.603341 1_2:+39724099 Msa0070090:CDS
ACCACATCTGAGCAACATCA+AGG 0.604021 1_2:-39725096 None:intergenic
GACCTGATCTATGTCATGAA+GGG 0.610507 1_2:-39726315 None:intergenic
ATGGGCATCACGGAAGAGGA+AGG 0.625191 1_2:+39724047 Msa0070090:CDS
GTTAGATGGAGATGAGACTC+TGG 0.626212 1_2:+39725117 Msa0070090:CDS
TTGGATATGAAGGATTCCAA+AGG 0.629055 1_2:+39726464 Msa0070090:CDS
AGAAATGCTTAATTCGCCAA+AGG 0.634008 1_2:+39726367 Msa0070090:CDS
CTTCATGACATAGATCAGGT+CGG 0.643951 1_2:+39726317 Msa0070090:CDS
TAACGGTCGAGCTATTCTTG+TGG 0.650372 1_2:+39725772 Msa0070090:CDS
GTTACTACCAACAACAACAT+GGG 0.656333 1_2:+39724029 Msa0070090:CDS
GCGTGAAACGGGAAAAGCAA+CGG 0.664518 1_2:-39724223 None:intergenic
ATATTGAAAGTTGAAAGGAA+AGG 0.665868 1_2:+39726534 Msa0070090:three_prime_UTR
TGGCCATTGACCATATTGAT+GGG 0.679797 1_2:-39725172 None:intergenic
TATCCTCAACAGGTCAACGA+GGG 0.687280 1_2:+39725707 Msa0070090:intron
ACGGTCGAGCTATTCTTGTG+GGG 0.693767 1_2:+39725774 Msa0070090:CDS
GTATCCTCAACAGGTCAACG+AGG 0.727923 1_2:+39725706 Msa0070090:intron
GGTAGTAACCATAACCTACG+AGG 0.780903 1_2:-39724015 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATAAAAAAGTGTTAGAAAA+AGG + chr1_2:39724375-39724394 Msa0070090:intron 15.0%
!! ATATTAAGATAAAGTTTGTA+CGG - chr1_2:39724581-39724600 None:intergenic 15.0%
!! TACAAACTTTATCTTAATAT+CGG + chr1_2:39724581-39724600 Msa0070090:intron 15.0%
!! ACATAAACATTTATATGATA+AGG + chr1_2:39724786-39724805 Msa0070090:intron 15.0%
!! AAATGAATGATAAAAAATTC+AGG - chr1_2:39725580-39725599 None:intergenic 15.0%
!! GTAATGTATATATAAAATAG+TGG + chr1_2:39726592-39726611 Msa0070090:three_prime_UTR 15.0%
!! TATTGAATGATATATACAAT+CGG - chr1_2:39726620-39726639 None:intergenic 15.0%
!! TTCTTTACTTTGATTAATCT+TGG - chr1_2:39723910-39723929 None:intergenic 20.0%
!! TATTAAGATAAAGTTTGTAC+GGG - chr1_2:39724580-39724599 None:intergenic 20.0%
!!! TATAGTTTATCTTTTTGTTC+TGG + chr1_2:39724752-39724771 Msa0070090:intron 20.0%
!!! AACTGAAATTTTCATGAAAA+TGG - chr1_2:39724987-39725006 None:intergenic 20.0%
!! TTTCAATATTGAAAGTTGAA+AGG + chr1_2:39726529-39726548 Msa0070090:three_prime_UTR 20.0%
!! TAAAGTACCAAAACCAAATT+TGG + chr1_2:39723981-39724000 Msa0070090:CDS 25.0%
!!! AAAAAAGTGTTAGAAAAAGG+AGG + chr1_2:39724378-39724397 Msa0070090:intron 25.0%
!!! AAAAAGTGTTAGAAAAAGGA+GGG + chr1_2:39724379-39724398 Msa0070090:intron 25.0%
!!! CAATGGTAACTAATTTTAAC+TGG - chr1_2:39724417-39724436 None:intergenic 25.0%
! CAAAATTTAGATGTCAACAA+TGG - chr1_2:39724434-39724453 None:intergenic 25.0%
! ATTCAGGAAATGAAAAATCA+AGG + chr1_2:39724916-39724935 Msa0070090:CDS 25.0%
! TCATGAAAATGGTAAATTAC+AGG - chr1_2:39724976-39724995 None:intergenic 25.0%
!! AAAATTTCAGGTAAAAACGA+AGG - chr1_2:39725049-39725068 None:intergenic 25.0%
! TGTTATTAACTAGCTATAGT+TGG - chr1_2:39725236-39725255 None:intergenic 25.0%
! TCATGTGGTACAAAATAAAA+AGG - chr1_2:39725268-39725287 None:intergenic 25.0%
! CAAGTGGATATTTATATGAA+AGG - chr1_2:39725473-39725492 None:intergenic 25.0%
! ATAGAAAATCAAGATGTGAA+AGG - chr1_2:39725633-39725652 None:intergenic 25.0%
! TTGTTTCATGATATTCCTTT+GGG - chr1_2:39725907-39725926 None:intergenic 25.0%
! ATATTGAAAGTTGAAAGGAA+AGG + chr1_2:39726534-39726553 Msa0070090:three_prime_UTR 25.0%
!!! TTTGGTTTTGGTACTTTAGT+TGG - chr1_2:39723979-39723998 None:intergenic 30.0%
!! AAACCTACCAAATTTGGTTT+TGG - chr1_2:39723991-39724010 None:intergenic 30.0%
!!! GCAAAAAGTGCTTTTAGATT+TGG + chr1_2:39724135-39724154 Msa0070090:CDS 30.0%
! AAAACTTGTTCAACATACAG+TGG - chr1_2:39724336-39724355 None:intergenic 30.0%
!!! CTAACACTTTTTTATTGCGT+GGG - chr1_2:39724371-39724390 None:intergenic 30.0%
!!! TCTAACACTTTTTTATTGCG+TGG - chr1_2:39724372-39724391 None:intergenic 30.0%
AGATTCACCTATAGAAAAAC+TGG + chr1_2:39724490-39724509 Msa0070090:intron 30.0%
! TAGACATCCAGTTTTTCTAT+AGG - chr1_2:39724500-39724519 None:intergenic 30.0%
ACTTATTTGAGCTTATCTAC+TGG + chr1_2:39724615-39724634 Msa0070090:intron 30.0%
AACAAAGTTGTCTATCCAAA+AGG + chr1_2:39724827-39724846 Msa0070090:intron 30.0%
ACAAAGTTGTCTATCCAAAA+GGG + chr1_2:39724828-39724847 Msa0070090:intron 30.0%
TATGGTACAGGATAAGTTTA+TGG - chr1_2:39724855-39724874 None:intergenic 30.0%
AAACTTATCCTGTACCATAT+TGG + chr1_2:39724856-39724875 Msa0070090:intron 30.0%
ACTCATACATACTTGATCTA+CGG + chr1_2:39724944-39724963 Msa0070090:CDS 30.0%
! TTTCAGTTTTACCTCATCTT+TGG + chr1_2:39724999-39725018 Msa0070090:intron 30.0%
! TTTACCTGAAATTTTGTTGC+AGG + chr1_2:39725054-39725073 Msa0070090:intron 30.0%
! TTACCTGAAATTTTGTTGCA+GGG + chr1_2:39725055-39725074 Msa0070090:intron 30.0%
AGGTAAGTAATGTCTAACTA+AGG - chr1_2:39725385-39725404 None:intergenic 30.0%
ATGACTAAAAGAAATGCAAG+TGG - chr1_2:39725489-39725508 None:intergenic 30.0%
ATTTGGAAAAGGAAAGATTC+AGG + chr1_2:39725805-39725824 Msa0070090:CDS 30.0%
CATTATGTAACGAAAAAGAC+TGG - chr1_2:39725833-39725852 None:intergenic 30.0%
TACCTAGAAATATTTCCCAA+AGG + chr1_2:39725889-39725908 Msa0070090:intron 30.0%
! TTCCTTTGGGAAATATTTCT+AGG - chr1_2:39725894-39725913 None:intergenic 30.0%
CTTGTTTCATGATATTCCTT+TGG - chr1_2:39725908-39725927 None:intergenic 30.0%
AAGGAATATCATGAAACAAG+AGG + chr1_2:39725908-39725927 Msa0070090:intron 30.0%
TTAAACAGAAAACACTCTTG+TGG - chr1_2:39725980-39725999 None:intergenic 30.0%
CATGTATCAGTATTGTGTTA+GGG - chr1_2:39726101-39726120 None:intergenic 30.0%
ACATGTATCAGTATTGTGTT+AGG - chr1_2:39726102-39726121 None:intergenic 30.0%
TAACACAATACTGATACATG+TGG + chr1_2:39726101-39726120 Msa0070090:intron 30.0%
TAAGATTGACAGAAATGGAT+GGG - chr1_2:39726207-39726226 None:intergenic 30.0%
TTAAGATTGACAGAAATGGA+TGG - chr1_2:39726208-39726227 None:intergenic 30.0%
ATCCATTTCTGTCAATCTTA+AGG + chr1_2:39726207-39726226 Msa0070090:intron 30.0%
TTCCTTAAGATTGACAGAAA+TGG - chr1_2:39726212-39726231 None:intergenic 30.0%
! TGAGATTGAAGTCTTATCTT+TGG - chr1_2:39726402-39726421 None:intergenic 30.0%
GTACCAAAACCAAATTTGGT+AGG + chr1_2:39723985-39724004 Msa0070090:CDS 35.0%
GGAAACAAACCTACCAAATT+TGG - chr1_2:39723997-39724016 None:intergenic 35.0%
GTTACTACCAACAACAACAT+GGG + chr1_2:39724029-39724048 Msa0070090:CDS 35.0%
TTAGAGATCAAAACGATAGC+TGG - chr1_2:39724551-39724570 None:intergenic 35.0%
!! CTTGTTTTCGTAAGCTTTCT+AGG + chr1_2:39724710-39724729 Msa0070090:intron 35.0%
! GATAAGTTTATGGACCCTTT+TGG - chr1_2:39724845-39724864 None:intergenic 35.0%
! GTTTTACCTCATCTTTGGAT+CGG + chr1_2:39725004-39725023 Msa0070090:intron 35.0%
GTGAATACGATTGATAGAGA+TGG + chr1_2:39725139-39725158 Msa0070090:CDS 35.0%
AAACATGTCACCCATCAATA+TGG + chr1_2:39725162-39725181 Msa0070090:CDS 35.0%
GTACTCACAATTACTACAAG+TGG - chr1_2:39725214-39725233 None:intergenic 35.0%
ACTAAGGATTGTTCTAGTCA+GGG - chr1_2:39725369-39725388 None:intergenic 35.0%
AACTAAGGATTGTTCTAGTC+AGG - chr1_2:39725370-39725389 None:intergenic 35.0%
ATTGCCATTCATCAAACTAG+CGG - chr1_2:39725682-39725701 None:intergenic 35.0%
! GCAATTTTTGTATCCTCAAC+AGG + chr1_2:39725697-39725716 Msa0070090:intron 35.0%
GGGAACAAAACATTTGGAAA+AGG + chr1_2:39725794-39725813 Msa0070090:CDS 35.0%
TTGTGTACCAAGCATATTGA+CGG + chr1_2:39726003-39726022 Msa0070090:intron 35.0%
CTGATACATGTGGTTATTAC+TGG + chr1_2:39726111-39726130 Msa0070090:intron 35.0%
ACGAAAACAGACATGAACAA+CGG - chr1_2:39726165-39726184 None:intergenic 35.0%
! ATGTCTGTTTTCGTGCTTAT+GGG + chr1_2:39726171-39726190 Msa0070090:intron 35.0%
! TTTTGCCACTGTAACAAAGA+GGG - chr1_2:39726282-39726301 None:intergenic 35.0%
! ATTTTGCCACTGTAACAAAG+AGG - chr1_2:39726283-39726302 None:intergenic 35.0%
AGAAATGCTTAATTCGCCAA+AGG + chr1_2:39726367-39726386 Msa0070090:CDS 35.0%
!! TCTTTGGTTGATAGTTCCTT+TGG - chr1_2:39726386-39726405 None:intergenic 35.0%
AATGCATGAATCTGCTTCTA+GGG - chr1_2:39726426-39726445 None:intergenic 35.0%
TAATGCATGAATCTGCTTCT+AGG - chr1_2:39726427-39726446 None:intergenic 35.0%
AGAAGCAGATTCATGCATTA+TGG + chr1_2:39726427-39726446 Msa0070090:CDS 35.0%
! TGAACATGAGTTGGATATGA+AGG + chr1_2:39726454-39726473 Msa0070090:CDS 35.0%
TTGGATATGAAGGATTCCAA+AGG + chr1_2:39726464-39726483 Msa0070090:CDS 35.0%
TGGATATGAAGGATTCCAAA+GGG + chr1_2:39726465-39726484 Msa0070090:CDS 35.0%
GTTTGTTTCCTCGTAGGTTA+TGG + chr1_2:39724007-39724026 Msa0070090:CDS 40.0%
GGTTACTACCAACAACAACA+TGG + chr1_2:39724028-39724047 Msa0070090:CDS 40.0%
! GTCGTTTAAGGTTGAAGAGA+AGG + chr1_2:39724071-39724090 Msa0070090:CDS 40.0%
! GTTTAAGGTTGAAGAGAAGG+AGG + chr1_2:39724074-39724093 Msa0070090:CDS 40.0%
TGAAGAGAAGGAGGTGAATA+AGG + chr1_2:39724083-39724102 Msa0070090:CDS 40.0%
!! AATAAGGTAGTGGTAGTGGA+AGG + chr1_2:39724099-39724118 Msa0070090:CDS 40.0%
GAAATTGTCAACCTTCTCTC+AGG + chr1_2:39724459-39724478 Msa0070090:intron 40.0%
CGACTGTATGATAGAACTTG+TGG + chr1_2:39724652-39724671 Msa0070090:intron 40.0%
GTCGATAACCAATATGGTAC+AGG - chr1_2:39724867-39724886 None:intergenic 40.0%
CACTCTGTCGATAACCAATA+TGG - chr1_2:39724873-39724892 None:intergenic 40.0%
TGACATGCGAAATGCTATTC+AGG + chr1_2:39724900-39724919 Msa0070090:CDS 40.0%
! AATTTTGTTGCAGGGTGGTT+TGG + chr1_2:39725063-39725082 Msa0070090:intron 40.0%
TCACCCATCAATATGGTCAA+TGG + chr1_2:39725169-39725188 Msa0070090:CDS 40.0%
TGGCCATTGACCATATTGAT+GGG - chr1_2:39725175-39725194 None:intergenic 40.0%
ATGGCCATTGACCATATTGA+TGG - chr1_2:39725176-39725195 None:intergenic 40.0%
GTGGATCATGTGTTATAGCA+TGG - chr1_2:39725195-39725214 None:intergenic 40.0%
CACATGATCCACAAGTGATT+GGG + chr1_2:39725281-39725300 Msa0070090:intron 40.0%
TAATAATCCCATGTTCGGTC+AGG - chr1_2:39725408-39725427 None:intergenic 40.0%
TGACCGAACATGGGATTATT+AGG + chr1_2:39725407-39725426 Msa0070090:intron 40.0%
GACCGAACATGGGATTATTA+GGG + chr1_2:39725408-39725427 Msa0070090:intron 40.0%
AGCCCTAATAATCCCATGTT+CGG - chr1_2:39725413-39725432 None:intergenic 40.0%
ATCTACTACACCTGTTTCGA+GGG - chr1_2:39725442-39725461 None:intergenic 40.0%
TATCTACTACACCTGTTTCG+AGG - chr1_2:39725443-39725462 None:intergenic 40.0%
! TAACATAGAGGCATGGTCTA+GGG - chr1_2:39725524-39725543 None:intergenic 40.0%
GATTCACCTTGCTAACATAG+AGG - chr1_2:39725536-39725555 None:intergenic 40.0%
! CAAACCGCTAGTTTGATGAA+TGG + chr1_2:39725675-39725694 Msa0070090:intron 40.0%
CTTGTGGGGAACAAAACATT+TGG + chr1_2:39725788-39725807 Msa0070090:CDS 40.0%
TGTCCGACACTAACATGTAT+CGG + chr1_2:39726068-39726087 Msa0070090:intron 40.0%
! CATGTCTGTTTTCGTGCTTA+TGG + chr1_2:39726170-39726189 Msa0070090:intron 40.0%
GACCTGATCTATGTCATGAA+GGG - chr1_2:39726318-39726337 None:intergenic 40.0%
CTTCATGACATAGATCAGGT+CGG + chr1_2:39726317-39726336 Msa0070090:CDS 40.0%
TTCATGACATAGATCAGGTC+GGG + chr1_2:39726318-39726337 Msa0070090:CDS 40.0%
TATGGTAGCTGAACATGAGT+TGG + chr1_2:39726445-39726464 Msa0070090:CDS 40.0%
TGTTCAAGAAACAGTCCCTT+TGG - chr1_2:39726483-39726502 None:intergenic 40.0%
! TGGTAGGTTTGTTTCCTCGT+AGG + chr1_2:39724001-39724020 Msa0070090:CDS 45.0%
GGTAGTAACCATAACCTACG+AGG - chr1_2:39724018-39724037 None:intergenic 45.0%
CAACAACAACATGGGCATCA+CGG + chr1_2:39724037-39724056 Msa0070090:CDS 45.0%
!! GAAGAGGAAGGTGTCGTTTA+AGG + chr1_2:39724059-39724078 Msa0070090:CDS 45.0%
GAAGGAGGTGAATAAGGTAG+TGG + chr1_2:39724089-39724108 Msa0070090:CDS 45.0%
! GGTGAATAAGGTAGTGGTAG+TGG + chr1_2:39724095-39724114 Msa0070090:CDS 45.0%
AACGGGAAAAGCAACGGTAA+GGG - chr1_2:39724220-39724239 None:intergenic 45.0%
AAACGGGAAAAGCAACGGTA+AGG - chr1_2:39724221-39724240 None:intergenic 45.0%
GTTACACCGATCCAAAGATG+AGG - chr1_2:39725013-39725032 None:intergenic 45.0%
CCACCCTGCAACAAAATTTC+AGG - chr1_2:39725061-39725080 None:intergenic 45.0%
! CCTGAAATTTTGTTGCAGGG+TGG + chr1_2:39725058-39725077 Msa0070090:intron 45.0%
ACCACATCTGAGCAACATCA+AGG - chr1_2:39725099-39725118 None:intergenic 45.0%
GTTGCTCAGATGTGGTTAGA+TGG + chr1_2:39725103-39725122 Msa0070090:CDS 45.0%
GTTAGATGGAGATGAGACTC+TGG + chr1_2:39725117-39725136 Msa0070090:CDS 45.0%
CCAATCACTTGTGGATCATG+TGG - chr1_2:39725283-39725302 None:intergenic 45.0%
CCACATGATCCACAAGTGAT+TGG + chr1_2:39725280-39725299 Msa0070090:intron 45.0%
CTCAAGTGGTTCATGAGCTT+CGG + chr1_2:39725307-39725326 Msa0070090:intron 45.0%
TCTAGTCAGGGTCTAGACAT+TGG - chr1_2:39725357-39725376 None:intergenic 45.0%
! CTAACATAGAGGCATGGTCT+AGG - chr1_2:39725525-39725544 None:intergenic 45.0%
ACCATGCCTCTATGTTAGCA+AGG + chr1_2:39725527-39725546 Msa0070090:intron 45.0%
ACCTTGCTAACATAGAGGCA+TGG - chr1_2:39725531-39725550 None:intergenic 45.0%
TATCCTCAACAGGTCAACGA+GGG + chr1_2:39725707-39725726 Msa0070090:intron 45.0%
TAACGGTCGAGCTATTCTTG+TGG + chr1_2:39725772-39725791 Msa0070090:CDS 45.0%
AACGGTCGAGCTATTCTTGT+GGG + chr1_2:39725773-39725792 Msa0070090:CDS 45.0%
GTACCAAGCATATTGACGGT+AGG + chr1_2:39726007-39726026 Msa0070090:intron 45.0%
ACACCTACCGTCAATATGCT+TGG - chr1_2:39726013-39726032 None:intergenic 45.0%
! ATGCCTTCAATCTGAGGTGT+TGG - chr1_2:39726042-39726061 None:intergenic 45.0%
CCAAACATGCCTTCAATCTG+AGG - chr1_2:39726048-39726067 None:intergenic 45.0%
! CCTCAGATTGAAGGCATGTT+TGG + chr1_2:39726045-39726064 Msa0070090:intron 45.0%
! GCACCGATACATGTTAGTGT+CGG - chr1_2:39726074-39726093 None:intergenic 45.0%
CCACACTGACAAAGACACAT+TGG - chr1_2:39726139-39726158 None:intergenic 45.0%
CCAATGTGTCTTTGTCAGTG+TGG + chr1_2:39726136-39726155 Msa0070090:intron 45.0%
! AGTGTCACTCAGCTTCATGA+TGG + chr1_2:39726251-39726270 Msa0070090:CDS 45.0%
ATCAGCCCTCTTTGTTACAG+TGG + chr1_2:39726274-39726293 Msa0070090:CDS 45.0%
TGATCTATGTCATGAAGGGC+TGG - chr1_2:39726314-39726333 None:intergenic 45.0%
AGCCCTTCATGACATAGATC+AGG + chr1_2:39726313-39726332 Msa0070090:CDS 45.0%
CGACCTGATCTATGTCATGA+AGG - chr1_2:39726319-39726338 None:intergenic 45.0%
CGTGATGCCCATGTTGTTGT+TGG - chr1_2:39724039-39724058 None:intergenic 50.0%
AGGGATTGAGAGAGAGCTGT+TGG - chr1_2:39724201-39724220 None:intergenic 50.0%
GCGTGAAACGGGAAAAGCAA+CGG - chr1_2:39724226-39724245 None:intergenic 50.0%
TCTTCTGCTCACCTGAGAGA+AGG - chr1_2:39724473-39724492 None:intergenic 50.0%
!! CAGGGTGGTTTGGTAAAAGC+AGG + chr1_2:39725073-39725092 Msa0070090:intron 50.0%
GCCTTGATGTTGCTCAGATG+TGG + chr1_2:39725095-39725114 Msa0070090:CDS 50.0%
TTGAGCGACCCAATCACTTG+TGG - chr1_2:39725292-39725311 None:intergenic 50.0%
AAGTGATTGGGTCGCTCAAG+TGG + chr1_2:39725293-39725312 Msa0070090:intron 50.0%
ACTTACCTCCTGACCGAACA+TGG + chr1_2:39725397-39725416 Msa0070090:intron 50.0%
CTTACCTCCTGACCGAACAT+GGG + chr1_2:39725398-39725417 Msa0070090:intron 50.0%
TAATCCCATGTTCGGTCAGG+AGG - chr1_2:39725405-39725424 None:intergenic 50.0%
! GGCTCATTTTCCCTCGAAAC+AGG + chr1_2:39725429-39725448 Msa0070090:intron 50.0%
GTATCCTCAACAGGTCAACG+AGG + chr1_2:39725706-39725725 Msa0070090:intron 50.0%
!! AGTGCCAGCGAGATTTTAGC+TGG + chr1_2:39725737-39725756 Msa0070090:CDS 50.0%
!!! GTGCCAGCGAGATTTTAGCT+GGG + chr1_2:39725738-39725757 Msa0070090:CDS 50.0%
!!! TGCCAGCGAGATTTTAGCTG+GGG + chr1_2:39725739-39725758 Msa0070090:CDS 50.0%
! GCTGGGGCGTTACATGATAA+CGG + chr1_2:39725755-39725774 Msa0070090:CDS 50.0%
ACGGTCGAGCTATTCTTGTG+GGG + chr1_2:39725774-39725793 Msa0070090:CDS 50.0%
ACTCTTGTGGAAGACTCGCT+TGG - chr1_2:39725967-39725986 None:intergenic 50.0%
GCTCCAACACCTCAGATTGA+AGG + chr1_2:39726036-39726055 Msa0070090:intron 50.0%
CAACATGGGCATCACGGAAG+AGG + chr1_2:39724043-39724062 Msa0070090:CDS 55.0%
ATGGGCATCACGGAAGAGGA+AGG + chr1_2:39724047-39724066 Msa0070090:CDS 55.0%
CTTCCCTCGTTGACCTGTTG+AGG - chr1_2:39725713-39725732 None:intergenic 55.0%
TCTGTTGTGCACTGCACGTC+TGG - chr1_2:39726350-39726369 None:intergenic 55.0%
ACCTCAGGTGCGCGTGAAAC+GGG - chr1_2:39724237-39724256 None:intergenic 60.0%
GACCTCAGGTGCGCGTGAAA+CGG - chr1_2:39724238-39724257 None:intergenic 60.0%
GAGAGAGACGAGCTGACCTC+AGG - chr1_2:39724252-39724271 None:intergenic 60.0%
CGCCCCAGCTAAAATCTCGC+TGG - chr1_2:39725744-39725763 None:intergenic 60.0%
TCCCGTTTCACGCGCACCTG+AGG + chr1_2:39724233-39724252 Msa0070090:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 39723895 39726692 39723895 ID=Msa0070090;Name=Msa0070090
chr1_2 mRNA 39723895 39726692 39723895 ID=Msa0070090-mRNA-1;Parent=Msa0070090;Name=Msa0070090-mRNA-1;_AED=0.13;_eAED=0.13;_QI=45|1|1|1|1|1|5|193|302
chr1_2 exon 39723895 39724254 39723895 ID=Msa0070090-mRNA-1:exon:12217;Parent=Msa0070090-mRNA-1
chr1_2 exon 39724889 39724975 39724889 ID=Msa0070090-mRNA-1:exon:12218;Parent=Msa0070090-mRNA-1
chr1_2 exon 39725076 39725225 39725076 ID=Msa0070090-mRNA-1:exon:12219;Parent=Msa0070090-mRNA-1
chr1_2 exon 39725719 39725826 39725719 ID=Msa0070090-mRNA-1:exon:12220;Parent=Msa0070090-mRNA-1
chr1_2 exon 39726251 39726692 39726251 ID=Msa0070090-mRNA-1:exon:12221;Parent=Msa0070090-mRNA-1
chr1_2 five_prime_UTR 39723895 39723939 39723895 ID=Msa0070090-mRNA-1:five_prime_utr;Parent=Msa0070090-mRNA-1
chr1_2 CDS 39723940 39724254 39723940 ID=Msa0070090-mRNA-1:cds;Parent=Msa0070090-mRNA-1
chr1_2 CDS 39724889 39724975 39724889 ID=Msa0070090-mRNA-1:cds;Parent=Msa0070090-mRNA-1
chr1_2 CDS 39725076 39725225 39725076 ID=Msa0070090-mRNA-1:cds;Parent=Msa0070090-mRNA-1
chr1_2 CDS 39725719 39725826 39725719 ID=Msa0070090-mRNA-1:cds;Parent=Msa0070090-mRNA-1
chr1_2 CDS 39726251 39726499 39726251 ID=Msa0070090-mRNA-1:cds;Parent=Msa0070090-mRNA-1
chr1_2 three_prime_UTR 39726500 39726692 39726500 ID=Msa0070090-mRNA-1:three_prime_utr;Parent=Msa0070090-mRNA-1
Gene Sequence

>Msa0070090

ATGATGAACTTTGATGTTAAAGCAAGAATAAATATTCCAACTAAAGTACCAAAACCAAATTTGGTAGGTTTGTTTCCTCGTAGGTTATGGTTACTACCAACAACAACATGGGCATCACGGAAGAGGAAGGTGTCGTTTAAGGTTGAAGAGAAGGAGGTGAATAAGGTAGTGGTAGTGGAAGGAATTGAATCAGTTGCAAAAAGTGCTTTTAGATTTGGCTTTTCAGCAGCTCTTTCTTTCTGTATTTTCTGTCATGCACCAACAGCTCTCTCTCAATCCCTTACCGTTGCTTTTCCCGTTTCACGCGCACCTGAGAGTGCTGCTGATGACATGCGAAATGCTATTCAGGAAATGAAAAATCAAGGAGCACACTCATACATACTTGATCTACGGAACAATCCTGGTGGTTTGGTAAAAGCAGGCCTTGATGTTGCTCAGATGTGGTTAGATGGAGATGAGACTCTGGTGAATACGATTGATAGAGATGGAAACATGTCACCCATCAATATGGTCAATGGCCATGCTATAACACATGATCCACTTGTAGTAATTGTCAACGAGGGAAGTGCAAGTGCCAGCGAGATTTTAGCTGGGGCGTTACATGATAACGGTCGAGCTATTCTTGTGGGGAACAAAACATTTGGAAAAGGAAAGATTCAGAGTGTCACTCAGCTTCATGATGGATCAGCCCTCTTTGTTACAGTGGCAAAATATGTATCACCAGCCCTTCATGACATAGATCAGGTCGGGATAATGCCAGACGTGCAGTGCACAACAGAAATGCTTAATTCGCCAAAGGAACTATCAACCAAAGATAAGACTTCAATCTCATCCCTAGAAGCAGATTCATGCATTATGGTAGCTGAACATGAGTTGGATATGAAGGATTCCAAAGGGACTGTTTCTTGA

Protein sequence

>Msa0070090

MMNFDVKARINIPTKVPKPNLVGLFPRRLWLLPTTTWASRKRKVSFKVEEKEVNKVVVVEGIESVAKSAFRFGFSAALSFCIFCHAPTALSQSLTVAFPVSRAPESAADDMRNAIQEMKNQGAHSYILDLRNNPGGLVKAGLDVAQMWLDGDETLVNTIDRDGNMSPINMVNGHAITHDPLVVIVNEGSASASEILAGALHDNGRAILVGNKTFGKGKIQSVTQLHDGSALFVTVAKYVSPALHDIDQVGIMPDVQCTTEMLNSPKELSTKDKTSISSLEADSCIMVAEHELDMKDSKGTVS*