AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0017420


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0017420 MtrunA17_Chr1g0169121 98.667 450 4 1 1 450 1 448 0.0 922
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0017420 AT1G04620.1 84.870 423 64 0 28 450 40 462 0.0 781

Find 123 sgRNAs with CRISPR-Local

Find 519 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCAAGTTTCCAACAAATTT+TGG 0.053248 1_1:-28876238 None:intergenic
TGTGGAGCACCACTTGAATT+TGG 0.214139 1_1:+28873799 Msa0017420:CDS
TCATAATGGAGAACTGTTTC+AGG 0.214817 1_1:-28874002 None:intergenic
ATGCTGATTCCGGAATATTT+TGG 0.236876 1_1:-28875462 None:intergenic
GGACTTGGTCGTTGGATATA+TGG 0.270258 1_1:+28875434 Msa0017420:intron
GCTGATGATAAAGCTAAATT+TGG 0.271815 1_1:+28875843 Msa0017420:CDS
CTGTCTCCCAGCAAATGATT+TGG 0.288560 1_1:+28875057 Msa0017420:CDS
CAACAAGTGCAAGGGTATTA+AGG 0.290200 1_1:-28872462 None:intergenic
TTAGCAGCCATCACTTCTTC+TGG 0.292447 1_1:-28872412 None:intergenic
TAAGAATGCTTGTGCTTTCT+TGG 0.303722 1_1:+28869558 Msa0017420:CDS
GCAGGTTCACTTGAAGCATT+TGG 0.351862 1_1:+28874924 Msa0017420:intron
CAAAACAGGACTGGAGAAAA+AGG 0.352288 1_1:+28869446 Msa0017420:CDS
GCAATTGAAATGCTTAAATC+AGG 0.358345 1_1:+28872071 Msa0017420:CDS
ACCTTTCCTTTCCCCACAAC+CGG 0.373870 1_1:-28876474 None:intergenic
AGTCAGAATATACCTTCAAC+AGG 0.373888 1_1:-28870926 None:intergenic
CAGCCTGCCCCAAAATTTGT+TGG 0.382744 1_1:+28876229 Msa0017420:CDS
AATCTTGCATAAACTCATAA+TGG 0.386967 1_1:-28874016 None:intergenic
CCCTAAGTAGGTCTCATCTA+AGG 0.390531 1_1:-28870867 None:intergenic
AGCAATGTCTTCTTTCTCTT+CGG 0.396270 1_1:+28869056 Msa0017420:exon
CTTGCAAATTCAATGCCCTT+TGG 0.401046 1_1:-28876406 None:intergenic
CAACCTTGCTAAAACAGGTC+TGG 0.404047 1_1:-28872300 None:intergenic
AGAATCCTCCATTTCAAAAC+AGG 0.404533 1_1:+28869432 Msa0017420:CDS
ATTTGTACGTAAACCGGTTG+TGG 0.404818 1_1:+28876461 Msa0017420:CDS
TTTCTGTGGTGTAGGTTGCC+AGG 0.407229 1_1:+28873662 Msa0017420:CDS
ACATCAACCAAATCATTTGC+TGG 0.410174 1_1:-28875064 None:intergenic
AAAAGTTCATACAACTGTAT+AGG 0.414289 1_1:-28876841 None:intergenic
AAATTGGAACCTGTTGTTCA+TGG 0.417037 1_1:+28870824 Msa0017420:CDS
TAGGTTCCACCTGGTGGGAT+AGG 0.417092 1_1:-28869475 None:intergenic
AACTATCAGTAATAAGCTTT+AGG 0.417887 1_1:+28876818 Msa0017420:three_prime_UTR
GGAACTATTTGTACGTAAAC+CGG 0.418637 1_1:+28876455 Msa0017420:CDS
CTTCCTCTACCATGAACAAC+AGG 0.421097 1_1:-28870833 None:intergenic
ATGTTGTGTCATGCTGATTC+CGG 0.431412 1_1:-28875472 None:intergenic
AAGAATGCTTGTGCTTTCTT+GGG 0.435235 1_1:+28869559 Msa0017420:CDS
GACTTGGTCGTTGGATATAT+GGG 0.435737 1_1:+28875435 Msa0017420:CDS
TTATTGCTCCATCTTGCTAC+AGG 0.435998 1_1:+28875086 Msa0017420:CDS
TTTGCTGGGAGACAGAAATA+AGG 0.436430 1_1:-28875049 None:intergenic
TAAATGGTTGCAGGGCTGAT+AGG 0.440802 1_1:+28876568 Msa0017420:intron
CGCTTGATTATCATACCATT+CGG 0.443793 1_1:+28876434 Msa0017420:CDS
ATGGGCGTGCCAAAATATTC+CGG 0.444128 1_1:+28875453 Msa0017420:CDS
GTTTGACAAAATGTATATAA+CGG 0.445252 1_1:-28876920 None:intergenic
CCTTAGATGAGACCTACTTA+GGG 0.447504 1_1:+28870867 Msa0017420:CDS
CAATGGAACCAGGGAAGGAC+TGG 0.454699 1_1:+28873950 Msa0017420:CDS
GAAGCCAACCTTGCTAAAAC+AGG 0.457249 1_1:-28872305 None:intergenic
GCTTGTGCTTTCTTGGGAGA+TGG 0.464642 1_1:+28869565 Msa0017420:CDS
AGTGCAAGGGTATTAAGGTT+AGG 0.466556 1_1:-28872457 None:intergenic
GTCAAAACTTTGTCTCTAGC+TGG 0.466618 1_1:+28876777 Msa0017420:three_prime_UTR
ATTTGTCATGGAGACTGTTA+AGG 0.468608 1_1:+28875821 Msa0017420:CDS
GGCACACCTATGCCACTGAT+TGG 0.471309 1_1:-28876691 None:intergenic
CGACTGCATTGATCTTTAGC+AGG 0.474250 1_1:-28869499 None:intergenic
TTTGTACGTAAACCGGTTGT+GGG 0.477133 1_1:+28876462 Msa0017420:CDS
AGCACGAATGGATAGAGAAA+GGG 0.479689 1_1:-28869082 None:intergenic
TGAGTTTATGCAAGATTACA+AGG 0.484461 1_1:+28874022 Msa0017420:CDS
CTGGGAGCAAATCTGTCGTC+AGG 0.485421 1_1:-28872281 None:intergenic
AAACTTATCCAGTCCTTCCC+TGG 0.487043 1_1:-28873958 None:intergenic
TATGTTCAGGTTGGTCCAAA+GGG 0.488373 1_1:+28876391 Msa0017420:intron
CGGTTTATACTTTATAGTCA+TGG 0.488613 1_1:-28876900 None:intergenic
ACCTTAGATGAGACCTACTT+AGG 0.488804 1_1:+28870866 Msa0017420:CDS
AACCTTGCTAAAACAGGTCT+GGG 0.491902 1_1:-28872299 None:intergenic
TAACTTACTGAATTAACTGT+TGG 0.494896 1_1:-28875715 None:intergenic
CTATGTTCAGGTTGGTCCAA+AGG 0.496815 1_1:+28876390 Msa0017420:intron
TTTCATCATTGACAGGCTGC+AGG 0.502477 1_1:+28873624 Msa0017420:intron
GCAGGGTAGGTTCCACCTGG+TGG 0.508024 1_1:-28869481 None:intergenic
GAACCTGTTGTTCATGGTAG+AGG 0.511132 1_1:+28870830 Msa0017420:CDS
TTCATAGGAGCTCAATGGAC+TGG 0.514762 1_1:+28872032 Msa0017420:intron
GCATTGATCTTTAGCAGGGT+AGG 0.515192 1_1:-28869494 None:intergenic
ACAAATAACCTGTAGCAAGA+TGG 0.517182 1_1:-28875094 None:intergenic
CGGAAACTTAACCCTGTTGA+AGG 0.518911 1_1:+28870914 Msa0017420:CDS
CATAATGGAGAACTGTTTCA+GGG 0.520042 1_1:-28874001 None:intergenic
CGTAAACCGGTTGTGGGGAA+AGG 0.530810 1_1:+28876468 Msa0017420:CDS
TTTAAGCATTTCAATTGCAA+TGG 0.533394 1_1:-28872066 None:intergenic
TTAACAGTCTCCATGACAAA+TGG 0.534122 1_1:-28875819 None:intergenic
CATCAACCAAATCATTTGCT+GGG 0.539146 1_1:-28875063 None:intergenic
ATGAGGAACTTCTGTATGCT+CGG 0.539703 1_1:+28870894 Msa0017420:CDS
ATCCACAATATATTACTGTC+AGG 0.540157 1_1:+28875493 Msa0017420:CDS
CGACAGTGGACAATGGAACC+AGG 0.543521 1_1:+28873940 Msa0017420:intron
TTAAGGTTAGGAGATAATGT+TGG 0.544648 1_1:-28872445 None:intergenic
TAATACCCTTGCACTTGTTG+AGG 0.544891 1_1:+28872465 Msa0017420:CDS
CATGCTCCAATCAGTGGCAT+AGG 0.547046 1_1:+28876685 Msa0017420:three_prime_UTR
AAGCACGAATGGATAGAGAA+AGG 0.547651 1_1:-28869083 None:intergenic
GAAGAAGTGATGGCTGCTAA+AGG 0.556856 1_1:+28872415 Msa0017420:CDS
CCTCCATTTCAAAACAGGAC+TGG 0.559011 1_1:+28869437 Msa0017420:CDS
GGTGTAGGTTGCCAGGTCCA+AGG 0.559413 1_1:+28873669 Msa0017420:CDS
TACCTGACAGTAATATATTG+TGG 0.560089 1_1:-28875495 None:intergenic
TTCATATGCTAAGAAAATTG+TGG 0.562861 1_1:+28876599 Msa0017420:CDS
CAGTAGTGGTACCTTGGACC+TGG 0.564696 1_1:-28873680 None:intergenic
AGGTCAAAGCCTATCCCACC+AGG 0.565383 1_1:+28869466 Msa0017420:CDS
TGAAGAAGAAGAAGCACGAA+TGG 0.573226 1_1:-28869094 None:intergenic
CACAAACCTCAACAAGTGCA+AGG 0.577511 1_1:-28872471 None:intergenic
TCTCAGAGAAGTGATTCTAA+AGG 0.579377 1_1:+28876658 Msa0017420:exon
AATTGCAGCATTAAGATCTG+TGG 0.579563 1_1:+28873781 Msa0017420:intron
TGAAATGCTTAAATCAGGCA+TGG 0.579843 1_1:+28872076 Msa0017420:CDS
GCTTCTTCTTCTTCATCACA+AGG 0.581995 1_1:+28869102 Msa0017420:CDS
AAGCTGTCATTTGTGTACAA+AGG 0.596616 1_1:+28872102 Msa0017420:CDS
TTAGCAGGGTAGGTTCCACC+TGG 0.597375 1_1:-28869484 None:intergenic
CCTTATTCGACAGTGGACAA+TGG 0.600320 1_1:+28873933 Msa0017420:intron
CAGGACACCAGAAGAAGTGA+TGG 0.602250 1_1:+28872405 Msa0017420:intron
GACTGCATTGATCTTTAGCA+GGG 0.602897 1_1:-28869498 None:intergenic
GACCTACTTAGGGGTCTATG+AGG 0.605671 1_1:+28870877 Msa0017420:CDS
GGATTACATGCTCCAATCAG+TGG 0.605996 1_1:+28876679 Msa0017420:three_prime_UTR
GGATAGGCGACCATTTGTCA+TGG 0.606587 1_1:+28875809 Msa0017420:CDS
CAGGGTAGGTTCCACCTGGT+GGG 0.606958 1_1:-28869480 None:intergenic
TTTGGACGGTCGTATTGAAG+AGG 0.610876 1_1:+28874942 Msa0017420:CDS
GTTCACTTGAAGCATTTGGA+CGG 0.611001 1_1:+28874928 Msa0017420:CDS
TACGTACAAATAGTTCCGAA+TGG 0.612235 1_1:-28876449 None:intergenic
CTGCTAAAGATCAATGCAGT+CGG 0.613645 1_1:+28869500 Msa0017420:CDS
GTGGACAATGGAACCAGGGA+AGG 0.613783 1_1:+28873945 Msa0017420:intron
TTCATGGTACACAATACAAG+GGG 0.613886 1_1:+28876864 Msa0017420:three_prime_UTR
TTGTACGTAAACCGGTTGTG+GGG 0.620641 1_1:+28876463 Msa0017420:CDS
TTTCATGGTACACAATACAA+GGG 0.631514 1_1:+28876863 Msa0017420:three_prime_UTR
AGCGAACACCGATGATGATG+TGG 0.634417 1_1:-28869008 None:intergenic
GCACGAATGGATAGAGAAAG+GGG 0.634642 1_1:-28869081 None:intergenic
TTACTATGTTGTGAATTGTG+TGG 0.635158 1_1:+28868974 Msa0017420:five_prime_UTR
AGAGCTTATCCAAATTCAAG+TGG 0.635776 1_1:-28873808 None:intergenic
ACCGGTTGTGGGGAAAGGAA+AGG 0.636372 1_1:+28876473 Msa0017420:CDS
AAAGATCAATGCAGTCGGTG+TGG 0.644116 1_1:+28869505 Msa0017420:CDS
TTCCTCATAGACCCCTAAGT+AGG 0.644398 1_1:-28870879 None:intergenic
ACAAACCTCAACAAGTGCAA+GGG 0.653375 1_1:-28872470 None:intergenic
GACAGTGGACAATGGAACCA+GGG 0.676637 1_1:+28873941 Msa0017420:intron
GTCAGAATATACCTTCAACA+GGG 0.677337 1_1:-28870925 None:intergenic
ATAATGGAGAACTGTTTCAG+GGG 0.681913 1_1:-28874000 None:intergenic
CTTAGATGAGACCTACTTAG+GGG 0.700742 1_1:+28870868 Msa0017420:CDS
TCAAAGCCTATCCCACCAGG+TGG 0.703549 1_1:+28869469 Msa0017420:CDS
TGAAACGACAGGAATGAACG+TGG 0.713648 1_1:+28875649 Msa0017420:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTTTATCACATTATTAT+CGG - chr1_1:28869209-28869228 None:intergenic 10.0%
!!! TTATTTTATCACATTATTAT+CGG - chr1_1:28869209-28869228 None:intergenic 10.0%
!!! ATTATTTTAAATAAATCAGT+TGG - chr1_1:28874688-28874707 None:intergenic 10.0%
!!! TTTTTTTTTTTTTTGTTTCT+TGG + chr1_1:28876358-28876377 Msa0017420:intron 10.0%
!!! CATTTTAAATTATTCTTTCT+TGG + chr1_1:28871065-28871084 Msa0017420:intron 15.0%
!! ATAAATTTATCTATTCATTC+AGG + chr1_1:28872582-28872601 Msa0017420:intron 15.0%
!!! AGTTTATTTGAGTTTTTAAT+TGG + chr1_1:28874088-28874107 Msa0017420:intron 15.0%
!!! TATTTTCTCAATAGAAAAAA+GGG + chr1_1:28874424-28874443 Msa0017420:intron 15.0%
!!! TTTCATTTTGATTTCTTAAA+TGG + chr1_1:28875148-28875167 Msa0017420:intron 15.0%
!!! TTTTATAATGAAAAAACTGA+TGG - chr1_1:28875380-28875399 None:intergenic 15.0%
!!! ATATTTTCTTTTTGATGAAA+TGG + chr1_1:28876064-28876083 Msa0017420:intron 15.0%
!! TTATATTGTTGAAACATAAA+TGG + chr1_1:28876552-28876571 Msa0017420:intron 15.0%
!! ATTCAATGTAATTATATGTG+TGG + chr1_1:28869286-28869305 Msa0017420:intron 20.0%
!! TTCAATGTAATTATATGTGT+GGG + chr1_1:28869287-28869306 Msa0017420:intron 20.0%
!! AAATCATTATGTGATATGAA+TGG + chr1_1:28869712-28869731 Msa0017420:intron 20.0%
!! TGCATATTGAAATTTCAATT+TGG - chr1_1:28870596-28870615 None:intergenic 20.0%
!!! ATTATTCTTTCTTGGTTTTT+TGG + chr1_1:28871073-28871092 Msa0017420:intron 20.0%
!!! TTTAAGAAGCATTTTTTCAA+TGG + chr1_1:28871121-28871140 Msa0017420:intron 20.0%
!!! AATTAGATAATGGAATAGTT+AGG + chr1_1:28871185-28871204 Msa0017420:intron 20.0%
!! GATCTTAATTTCTATGATTT+AGG - chr1_1:28871379-28871398 None:intergenic 20.0%
!! ATATCAATGAAATATTTCAG+TGG - chr1_1:28871401-28871420 None:intergenic 20.0%
!!! TCCTTTACAATAATTTTATG+AGG + chr1_1:28871552-28871571 Msa0017420:intron 20.0%
!! TCCTCATAAAATTATTGTAA+AGG - chr1_1:28871556-28871575 None:intergenic 20.0%
!! AGCATATGAAAAAAACTTAA+AGG - chr1_1:28871740-28871759 None:intergenic 20.0%
!!! ATTTATCTACATGTTTTGAT+TGG + chr1_1:28872132-28872151 Msa0017420:intron 20.0%
!! AATGAAAAACATTAGAAACA+TGG - chr1_1:28872161-28872180 None:intergenic 20.0%
!!! TAAGATCAATGTTATTTACA+CGG - chr1_1:28872203-28872222 None:intergenic 20.0%
!! TTAAAATACTTCATTTCTTC+AGG + chr1_1:28872386-28872405 Msa0017420:intron 20.0%
!! GAATTACTTATGTATACTAT+AGG + chr1_1:28872740-28872759 Msa0017420:intron 20.0%
!! CATTGAATCAATAAAATCTA+CGG + chr1_1:28872980-28872999 Msa0017420:intron 20.0%
!! ATTGAATCAATAAAATCTAC+GGG + chr1_1:28872981-28873000 Msa0017420:intron 20.0%
!!! TGAACAACTTTTTTTTTTGA+AGG - chr1_1:28873188-28873207 None:intergenic 20.0%
!!! GTAATATATTAAGTTCTAAC+TGG - chr1_1:28873443-28873462 None:intergenic 20.0%
!! ATTAAATGTAAGTGTAAAAC+TGG + chr1_1:28873519-28873538 Msa0017420:intron 20.0%
!!! ACAATATCTGAAATAGAAAA+TGG - chr1_1:28873566-28873585 None:intergenic 20.0%
!! GTCATACAATGAATATAAAA+AGG - chr1_1:28873598-28873617 None:intergenic 20.0%
!! TCAAATAAACTAATTCAAAC+AGG - chr1_1:28874079-28874098 None:intergenic 20.0%
!! AATAAGTAGAAAACAACTTA+TGG - chr1_1:28874169-28874188 None:intergenic 20.0%
!!! GTATTTTCTCAATAGAAAAA+AGG + chr1_1:28874423-28874442 Msa0017420:intron 20.0%
!!! TTTTAAATTTTAACTTGAGC+AGG + chr1_1:28875024-28875043 Msa0017420:intron 20.0%
!! AAAACTATCACTTAATTAGA+TGG + chr1_1:28875398-28875417 Msa0017420:intron 20.0%
!! AAATAGAGAAAAGATACTTA+AGG - chr1_1:28876138-28876157 None:intergenic 20.0%
!!! GATTGCATTTTTACTAAATT+TGG + chr1_1:28876258-28876277 Msa0017420:CDS 20.0%
!! TATGCAAGAGAATTTATTTA+TGG + chr1_1:28876496-28876515 Msa0017420:intron 20.0%
!! GTTTGACAAAATGTATATAA+CGG - chr1_1:28876923-28876942 None:intergenic 20.0%
! CTCATCACTCATAAAATAAA+GGG - chr1_1:28869621-28869640 None:intergenic 25.0%
! ACTCATCACTCATAAAATAA+AGG - chr1_1:28869622-28869641 None:intergenic 25.0%
! ATTTCACAAAGTTACTAACA+AGG + chr1_1:28870347-28870366 Msa0017420:intron 25.0%
!! ACTTATTGATTATTTCCACT+AGG - chr1_1:28870434-28870453 None:intergenic 25.0%
! TTTGTCGCAAAAAGTAAATT+TGG - chr1_1:28870491-28870510 None:intergenic 25.0%
!!! TACTTTTTGCGACAAAAAAA+TGG + chr1_1:28870495-28870514 Msa0017420:intron 25.0%
! CTTATAAGAATATTAAGCGA+TGG - chr1_1:28870699-28870718 None:intergenic 25.0%
!! ATAAAGAGTCCAATCAATTT+TGG - chr1_1:28870785-28870804 None:intergenic 25.0%
!! TCTTTTTCTGTTTCAGAAAT+TGG + chr1_1:28870808-28870827 Msa0017420:intron 25.0%
! TAGTTTCATACTCATTAGAA+CGG - chr1_1:28870979-28870998 None:intergenic 25.0%
! GCTTCTTAAAATGTAAAGAA+TGG - chr1_1:28871111-28871130 None:intergenic 25.0%
! ATTATCTAATTACCACAAAG+GGG - chr1_1:28871176-28871195 None:intergenic 25.0%
! CATTATCTAATTACCACAAA+GGG - chr1_1:28871177-28871196 None:intergenic 25.0%
! TTAATCTCTTCCCTATTTAT+AGG - chr1_1:28871214-28871233 None:intergenic 25.0%
! CTTAATTTCTATGATTTAGG+AGG - chr1_1:28871376-28871395 None:intergenic 25.0%
! GGTTTCAAACTAAATACTAA+AGG - chr1_1:28871438-28871457 None:intergenic 25.0%
!! TCATGGATTACCTTATAAAT+TGG + chr1_1:28871482-28871501 Msa0017420:intron 25.0%
!!! GTAAAAGCATCCAATTTATA+AGG - chr1_1:28871495-28871514 None:intergenic 25.0%
!! ATAAATTGGATGCTTTTACA+TGG + chr1_1:28871496-28871515 Msa0017420:intron 25.0%
! TTGGATAAACAGCTTAATTA+AGG + chr1_1:28871641-28871660 Msa0017420:intron 25.0%
! TGGATAAACAGCTTAATTAA+GGG + chr1_1:28871642-28871661 Msa0017420:intron 25.0%
!!! GTTTTTTTCATATGCTATCA+TGG + chr1_1:28871744-28871763 Msa0017420:intron 25.0%
! AATAAGCTGCTAAAAACTTA+TGG + chr1_1:28871779-28871798 Msa0017420:intron 25.0%
! TAAAGCTTAACTACTAGAAT+AGG - chr1_1:28871854-28871873 None:intergenic 25.0%
! TCATCAATTTATGTCTATGA+TGG + chr1_1:28871953-28871972 Msa0017420:intron 25.0%
! CATCAATTTATGTCTATGAT+GGG + chr1_1:28871954-28871973 Msa0017420:intron 25.0%
!! GTAAAATTCGTTCTTTTCAT+AGG + chr1_1:28872017-28872036 Msa0017420:intron 25.0%
! TTTAAGCATTTCAATTGCAA+TGG - chr1_1:28872069-28872088 None:intergenic 25.0%
! ATCACTGTGATATATAAAGT+TGG - chr1_1:28872261-28872280 None:intergenic 25.0%
!!! CGTAGATTTTATTGATTCAA+TGG - chr1_1:28872982-28873001 None:intergenic 25.0%
!!! ATTCTTTGTGATGTTTTGTT+AGG - chr1_1:28873055-28873074 None:intergenic 25.0%
! TCTGAACCAAAAAATAAAAC+TGG + chr1_1:28873365-28873384 Msa0017420:intron 25.0%
!!! TCTCTTCCAGTTTTATTTTT+TGG - chr1_1:28873374-28873393 None:intergenic 25.0%
! GTGTATAATAACTCAATCAT+TGG - chr1_1:28873414-28873433 None:intergenic 25.0%
!!! TTGCAATGTTTTGATTATGT+TGG + chr1_1:28873888-28873907 Msa0017420:intron 25.0%
! AATCTTGCATAAACTCATAA+TGG - chr1_1:28874019-28874038 None:intergenic 25.0%
!! CTGAAAACTCATGTTTTATA+AGG + chr1_1:28874052-28874071 Msa0017420:intron 25.0%
! ACTAAGTGCTTATAGTATAA+GGG - chr1_1:28874306-28874325 None:intergenic 25.0%
! AACTAAGTGCTTATAGTATA+AGG - chr1_1:28874307-28874326 None:intergenic 25.0%
! ATGTATTAAGAAGATGAGAT+GGG + chr1_1:28874401-28874420 Msa0017420:intron 25.0%
! TTAGTTAGAGTAGATTCAAT+TGG + chr1_1:28874478-28874497 Msa0017420:intron 25.0%
! TAGATTCAATTGGTTAAATG+TGG + chr1_1:28874488-28874507 Msa0017420:intron 25.0%
!! TAAAATAACATTTTGCGAAG+AGG + chr1_1:28874575-28874594 Msa0017420:intron 25.0%
! AATACATTGTAGTAGTACTA+AGG - chr1_1:28874627-28874646 None:intergenic 25.0%
! TTAGTACTACTACAATGTAT+TGG + chr1_1:28874626-28874645 Msa0017420:intron 25.0%
! TCAGGCAATGTAATATAAAT+TGG + chr1_1:28874649-28874668 Msa0017420:intron 25.0%
!!! TATTTTTGTTTGTTAATCCG+TGG - chr1_1:28874995-28875014 None:intergenic 25.0%
!! TCATTTTATGTTGCACTAAT+TGG + chr1_1:28875175-28875194 Msa0017420:intron 25.0%
!!! ATTTTATTTCACCTGAACTT+AGG + chr1_1:28875290-28875309 Msa0017420:intron 25.0%
!! TCTCTTTTTGCACTTTATAT+GGG + chr1_1:28875541-28875560 Msa0017420:intron 25.0%
! AAATGTTTCTTGAAGGAATA+TGG + chr1_1:28875592-28875611 Msa0017420:intron 25.0%
! TAACTTACTGAATTAACTGT+TGG - chr1_1:28875718-28875737 None:intergenic 25.0%
! TCAAAATTAGTGTTCTCAAA+TGG - chr1_1:28876018-28876037 None:intergenic 25.0%
!!! TTATTTTTCCTTTGAATGTC+TGG + chr1_1:28876183-28876202 Msa0017420:intron 25.0%
!! TCAAGTTTCCAACAAATTTT+GGG - chr1_1:28876240-28876259 None:intergenic 25.0%
!! ATCAAGTTTCCAACAAATTT+TGG - chr1_1:28876241-28876260 None:intergenic 25.0%
!! ACAATTTTCTTAGCATATGA+AGG - chr1_1:28876600-28876619 None:intergenic 25.0%
! TTCATATGCTAAGAAAATTG+TGG + chr1_1:28876599-28876618 Msa0017420:CDS 25.0%
!! AGACATAATGCATATTTTGT+AGG - chr1_1:28876715-28876734 None:intergenic 25.0%
! AACTATCAGTAATAAGCTTT+AGG + chr1_1:28876818-28876837 Msa0017420:three_prime_UTR 25.0%
! AAAAGTTCATACAACTGTAT+AGG - chr1_1:28876844-28876863 None:intergenic 25.0%
!!! AGTTGTATGAACTTTTTTCA+TGG + chr1_1:28876848-28876867 Msa0017420:three_prime_UTR 25.0%
TTACTATGTTGTGAATTGTG+TGG + chr1_1:28868974-28868993 Msa0017420:five_prime_UTR 30.0%
ATGTAAAGAAAAAGAAGAGG+TGG - chr1_1:28869142-28869161 None:intergenic 30.0%
AGCATGTAAAGAAAAAGAAG+AGG - chr1_1:28869145-28869164 None:intergenic 30.0%
TATCACATTATTATCGGTGT+CGG - chr1_1:28869203-28869222 None:intergenic 30.0%
TATCACATTATTATCGGTGT+CGG - chr1_1:28869203-28869222 None:intergenic 30.0%
ATATGAGAAAAGAGAAGTGA+AGG - chr1_1:28869382-28869401 None:intergenic 30.0%
TGAGTAAAGTTTACATGACA+TGG - chr1_1:28869654-28869673 None:intergenic 30.0%
GACAATGCATAATATATGCA+AGG + chr1_1:28869814-28869833 Msa0017420:intron 30.0%
! AACTTAATCCCTACATCTTT+TGG - chr1_1:28869865-28869884 None:intergenic 30.0%
GCATTAAGTCCAATAGTAAT+GGG + chr1_1:28870078-28870097 Msa0017420:intron 30.0%
CATTTCATTCCCATTACTAT+TGG - chr1_1:28870090-28870109 None:intergenic 30.0%
! TAGTAATGGGAATGAAATGA+AGG + chr1_1:28870091-28870110 Msa0017420:intron 30.0%
! AGTAATGGGAATGAAATGAA+GGG + chr1_1:28870092-28870111 Msa0017420:intron 30.0%
!!! GTCTCTCGTTTTAATTTTTC+AGG - chr1_1:28870161-28870180 None:intergenic 30.0%
ACTTGAAACTGAAAGAGAAA+AGG + chr1_1:28870244-28870263 Msa0017420:intron 30.0%
AGCGAACATAAAACTTTAGT+CGG - chr1_1:28870326-28870345 None:intergenic 30.0%
! ACTAACAAGGTGATGATTTT+TGG + chr1_1:28870360-28870379 Msa0017420:intron 30.0%
! CTAACAAGGTGATGATTTTT+GGG + chr1_1:28870361-28870380 Msa0017420:intron 30.0%
TATTAAGCGATGGTTGAATT+AGG - chr1_1:28870689-28870708 None:intergenic 30.0%
TTACACAGACCAAAATTGAT+TGG + chr1_1:28870773-28870792 Msa0017420:intron 30.0%
AGTTTCATACTCATTAGAAC+GGG - chr1_1:28870978-28870997 None:intergenic 30.0%
!!! ATTCTTTCTTGGTTTTTTGG+TGG + chr1_1:28871076-28871095 Msa0017420:intron 30.0%
!!! CATTTTTTCAATGGTTTCTC+TGG + chr1_1:28871130-28871149 Msa0017420:intron 30.0%
CCATTATCTAATTACCACAA+AGG - chr1_1:28871178-28871197 None:intergenic 30.0%
CCTTTGTGGTAATTAGATAA+TGG + chr1_1:28871175-28871194 Msa0017420:intron 30.0%
TTTCCTGGATTATAGAATAG+TGG - chr1_1:28871300-28871319 None:intergenic 30.0%
TGGTATTACTACAGAAAATG+CGG - chr1_1:28871328-28871347 None:intergenic 30.0%
! TTTGAAACCGATTTCAGTTT+CGG + chr1_1:28871449-28871468 Msa0017420:intron 30.0%
TGATAAACCGAAACTGAAAT+CGG - chr1_1:28871459-28871478 None:intergenic 30.0%
AGAGTGAGTGAAAAAAATGA+TGG + chr1_1:28871578-28871597 Msa0017420:intron 30.0%
GAGTGAGTGAAAAAAATGAT+GGG + chr1_1:28871579-28871598 Msa0017420:intron 30.0%
ATTAAGCTGTTTATCCAACA+AGG - chr1_1:28871639-28871658 None:intergenic 30.0%
GCAATTGAAATGCTTAAATC+AGG + chr1_1:28872071-28872090 Msa0017420:CDS 30.0%
TTAAGGTTAGGAGATAATGT+TGG - chr1_1:28872448-28872467 None:intergenic 30.0%
GACACATTCTCTAACAAAAA+GGG - chr1_1:28872500-28872519 None:intergenic 30.0%
TGACACATTCTCTAACAAAA+AGG - chr1_1:28872501-28872520 None:intergenic 30.0%
TATAAGACGTTTCGTTCAAA+TGG + chr1_1:28872615-28872634 Msa0017420:intron 30.0%
GGTATAATGTGAAACATGAT+AGG + chr1_1:28872689-28872708 Msa0017420:intron 30.0%
ATGCTTCCTATTATCTCTAA+GGG - chr1_1:28872886-28872905 None:intergenic 30.0%
TATGCTTCCTATTATCTCTA+AGG - chr1_1:28872887-28872906 None:intergenic 30.0%
! ACATCACAAAGAATGTTTTC+AGG + chr1_1:28873061-28873080 Msa0017420:intron 30.0%
!!! AGTTGTTCATTGTTTTGAAC+TGG + chr1_1:28873199-28873218 Msa0017420:intron 30.0%
!! GTTATTTCTCTGACTCTTAA+AGG + chr1_1:28873241-28873260 Msa0017420:intron 30.0%
ATTCAAGTATTTGACCTTGT+TGG - chr1_1:28873317-28873336 None:intergenic 30.0%
!!! AGTTACTGAATGAGCTTTTT+TGG - chr1_1:28873465-28873484 None:intergenic 30.0%
CTTTGAATTTCATCATTGAC+AGG + chr1_1:28873617-28873636 Msa0017420:intron 30.0%
AGAATAAACCTTTACAGTAG+TGG - chr1_1:28873697-28873716 None:intergenic 30.0%
TACAATATAACCAGTCACAA+TGG - chr1_1:28873743-28873762 None:intergenic 30.0%
! TTGGATAAGCTCTATGTTTT+AGG + chr1_1:28873818-28873837 Msa0017420:CDS 30.0%
!! TATGTTTTAGGCACAAATTG+TGG + chr1_1:28873830-28873849 Msa0017420:CDS 30.0%
TGAGTTTATGCAAGATTACA+AGG + chr1_1:28874022-28874041 Msa0017420:CDS 30.0%
TAGCTTACGGAAATTGTTTA+TGG + chr1_1:28874207-28874226 Msa0017420:intron 30.0%
TTTAGCTGTTTATCCAAACA+TGG + chr1_1:28874325-28874344 Msa0017420:intron 30.0%
GATGTATTAAGAAGATGAGA+TGG + chr1_1:28874400-28874419 Msa0017420:intron 30.0%
TGGTTAAATGTGGAGAAATA+AGG + chr1_1:28874498-28874517 Msa0017420:intron 30.0%
GGTTAAATGTGGAGAAATAA+GGG + chr1_1:28874499-28874518 Msa0017420:intron 30.0%
AGAAAATTGCATTGTTCGAA+TGG + chr1_1:28874538-28874557 Msa0017420:intron 30.0%
! GCTTAAAACTGCAGATTTTT+GGG + chr1_1:28874803-28874822 Msa0017420:intron 30.0%
AGTAAGGCAATATATAACCT+TGG - chr1_1:28874882-28874901 None:intergenic 30.0%
GTTTAAACAGAAACTGAGTA+AGG - chr1_1:28874898-28874917 None:intergenic 30.0%
CCGTGGAATAGTAAAATAAA+GGG - chr1_1:28874978-28874997 None:intergenic 30.0%
!!! CCCTTTATTTTACTATTCCA+CGG + chr1_1:28874975-28874994 Msa0017420:intron 30.0%
TCCGTGGAATAGTAAAATAA+AGG - chr1_1:28874979-28874998 None:intergenic 30.0%
!!! AGCTGTTTTGACTATACAAA+TGG + chr1_1:28875222-28875241 Msa0017420:intron 30.0%
ACACGTAGATGTAAAAAACT+CGG - chr1_1:28875320-28875339 None:intergenic 30.0%
! TGATGGTGAAGAAATTAGAA+TGG - chr1_1:28875363-28875382 None:intergenic 30.0%
! TTAGATGGTGTGATATTTTC+AGG + chr1_1:28875413-28875432 Msa0017420:intron 30.0%
ATCCACAATATATTACTGTC+AGG + chr1_1:28875493-28875512 Msa0017420:CDS 30.0%
TACCTGACAGTAATATATTG+TGG - chr1_1:28875498-28875517 None:intergenic 30.0%
TAAAGTGCAAAAAGAGACTT+AGG - chr1_1:28875538-28875557 None:intergenic 30.0%
! GTCTCTTTTTGCACTTTATA+TGG + chr1_1:28875540-28875559 Msa0017420:intron 30.0%
CGTACATAAATGTTTCTTGA+AGG + chr1_1:28875585-28875604 Msa0017420:intron 30.0%
! TATTTTGTTCTTGAAACGAC+AGG + chr1_1:28875638-28875657 Msa0017420:intron 30.0%
! ACTTTTCGCTGTATTATTCA+GGG + chr1_1:28875786-28875805 Msa0017420:intron 30.0%
GCTGATGATAAAGCTAAATT+TGG + chr1_1:28875843-28875862 Msa0017420:CDS 30.0%
AAAGCTAAATTTGGTATGCT+TGG + chr1_1:28875852-28875871 Msa0017420:intron 30.0%
! CAGATTGAAGTACTAAATGT+AGG - chr1_1:28875945-28875964 None:intergenic 30.0%
CTACATTTAGTACTTCAATC+TGG + chr1_1:28875943-28875962 Msa0017420:intron 30.0%
ATTCAAATGCTTCTATGCTA+TGG + chr1_1:28875989-28876008 Msa0017420:intron 30.0%
AAATTAGTGTTCTCAAATGG+TGG - chr1_1:28876015-28876034 None:intergenic 30.0%
AAATAAAGCATGTGAACATG+AGG - chr1_1:28876041-28876060 None:intergenic 30.0%
! AAATGGATTTATCTCTCCAT+GGG + chr1_1:28876081-28876100 Msa0017420:intron 30.0%
GATACTTAAGGTAAAAACCA+CGG - chr1_1:28876126-28876145 None:intergenic 30.0%
TGATTAAACCAGACATTCAA+AGG - chr1_1:28876194-28876213 None:intergenic 30.0%
! TTTGAATGTCTGGTTTAATC+AGG + chr1_1:28876193-28876212 Msa0017420:intron 30.0%
! CAAGTTTCCAACAAATTTTG+GGG - chr1_1:28876239-28876258 None:intergenic 30.0%
TTGAAACATAAATGGTTGCA+GGG + chr1_1:28876560-28876579 Msa0017420:intron 30.0%
GTGGATATGTACAACAAAAA+TGG + chr1_1:28876618-28876637 Msa0017420:CDS 30.0%
! TTTTCATGGTACACAATACA+AGG + chr1_1:28876862-28876881 Msa0017420:three_prime_UTR 30.0%
TTTCATGGTACACAATACAA+GGG + chr1_1:28876863-28876882 Msa0017420:three_prime_UTR 30.0%
CGGTTTATACTTTATAGTCA+TGG - chr1_1:28876903-28876922 None:intergenic 30.0%
AGAAAAAGCCACATCATCAT+CGG + chr1_1:28869000-28869019 Msa0017420:five_prime_UTR 35.0%
AGCAATGTCTTCTTTCTCTT+CGG + chr1_1:28869056-28869075 Msa0017420:exon 35.0%
AAAGAAAAAGAAGAGGTGGT+AGG - chr1_1:28869138-28869157 None:intergenic 35.0%
!! TCTGATCCTTCTTCTTGTTT+TGG + chr1_1:28869405-28869424 Msa0017420:intron 35.0%
AGAATCCTCCATTTCAAAAC+AGG + chr1_1:28869432-28869451 Msa0017420:CDS 35.0%
TAAGAATGCTTGTGCTTTCT+TGG + chr1_1:28869558-28869577 Msa0017420:CDS 35.0%
AAGAATGCTTGTGCTTTCTT+GGG + chr1_1:28869559-28869578 Msa0017420:CDS 35.0%
TTAGCGTTATGTCAGATGTA+GGG + chr1_1:28869759-28869778 Msa0017420:intron 35.0%
TGCATAATATATGCAAGGTC+TGG + chr1_1:28869819-28869838 Msa0017420:intron 35.0%
GCATAATATATGCAAGGTCT+GGG + chr1_1:28869820-28869839 Msa0017420:intron 35.0%
CATAATATATGCAAGGTCTG+GGG + chr1_1:28869821-28869840 Msa0017420:intron 35.0%
! TTAATCCCTACATCTTTTGG+TGG - chr1_1:28869862-28869881 None:intergenic 35.0%
! AGCTATTCATTTGGGTTACT+TGG + chr1_1:28869927-28869946 Msa0017420:intron 35.0%
! GCTATTCATTTGGGTTACTT+GGG + chr1_1:28869928-28869947 Msa0017420:intron 35.0%
TAATCGAACCTAAGACCTTA+AGG - chr1_1:28869996-28870015 None:intergenic 35.0%
GTCTTAGGTTCGATTATCTT+CGG + chr1_1:28870000-28870019 Msa0017420:intron 35.0%
!! ATTATCTTCGGTGCCAATTT+GGG + chr1_1:28870012-28870031 Msa0017420:intron 35.0%
TTACTATTGGACTTAATGCG+TGG - chr1_1:28870077-28870096 None:intergenic 35.0%
CGCATTAAGTCCAATAGTAA+TGG + chr1_1:28870077-28870096 Msa0017420:intron 35.0%
!! TCCTACTATGTTTTTACCCT+TGG - chr1_1:28870225-28870244 None:intergenic 35.0%
ACTTTAGTCGGAGAAGAAAA+GGG - chr1_1:28870314-28870333 None:intergenic 35.0%
AACTTTAGTCGGAGAAGAAA+AGG - chr1_1:28870315-28870334 None:intergenic 35.0%
GACTAATTGATGCGATAATG+TGG - chr1_1:28870407-28870426 None:intergenic 35.0%
CAGATTCTTCTACACTAGAA+TGG - chr1_1:28870459-28870478 None:intergenic 35.0%
CATTCTAGTGTAGAAGAATC+TGG + chr1_1:28870457-28870476 Msa0017420:intron 35.0%
GATGGTTGAATTAGGCATAA+TGG - chr1_1:28870681-28870700 None:intergenic 35.0%
!!! CTGTGTAAACTGTCATTTTC+TGG - chr1_1:28870761-28870780 None:intergenic 35.0%
AAATTGGAACCTGTTGTTCA+TGG + chr1_1:28870824-28870843 Msa0017420:CDS 35.0%
GTCAGAATATACCTTCAACA+GGG - chr1_1:28870928-28870947 None:intergenic 35.0%
AGTCAGAATATACCTTCAAC+AGG - chr1_1:28870929-28870948 None:intergenic 35.0%
GTTTCATACTCATTAGAACG+GGG - chr1_1:28870977-28870996 None:intergenic 35.0%
AAATGTAAAGAATGGCCAAG+AGG - chr1_1:28871103-28871122 None:intergenic 35.0%
TAGTTAGGCTGCCTATAAAT+AGG + chr1_1:28871200-28871219 Msa0017420:intron 35.0%
AGTTAGGCTGCCTATAAATA+GGG + chr1_1:28871201-28871220 Msa0017420:intron 35.0%
TTTCTGTAGTAATACCAGTC+TGG + chr1_1:28871331-28871350 Msa0017420:intron 35.0%
GTTTCGGTTTATCAACTTCA+TGG + chr1_1:28871465-28871484 Msa0017420:intron 35.0%
TCAAGCAATGGTAGCATTTA+CGG - chr1_1:28871524-28871543 None:intergenic 35.0%
! TGTTTATCCAACAAGGCATT+AGG - chr1_1:28871632-28871651 None:intergenic 35.0%
AGGAACTTGTGAAACTGTTA+AGG - chr1_1:28871834-28871853 None:intergenic 35.0%
! TTTTACGATGAGACTGTGTT+TGG + chr1_1:28871898-28871917 Msa0017420:intron 35.0%
! TTCTTTTCATAGGAGCTCAA+TGG + chr1_1:28872027-28872046 Msa0017420:intron 35.0%
TGAAATGCTTAAATCAGGCA+TGG + chr1_1:28872076-28872095 Msa0017420:CDS 35.0%
! AAGCTGTCATTTGTGTACAA+AGG + chr1_1:28872102-28872121 Msa0017420:CDS 35.0%
! CTTTTGTTGAGTGTTCTTCT+AGG - chr1_1:28872717-28872736 None:intergenic 35.0%
AACCTTCCCTTAGAGATAAT+AGG + chr1_1:28872877-28872896 Msa0017420:intron 35.0%
! TTCCTATTATCTCTAAGGGA+AGG - chr1_1:28872882-28872901 None:intergenic 35.0%
ATCATTGTACTGTCGTAACT+CGG - chr1_1:28873132-28873151 None:intergenic 35.0%
GACTCTTAAAGGAGAAAGAT+CGG + chr1_1:28873252-28873271 Msa0017420:intron 35.0%
AAGATCGGTAAACGAATTGT+TGG + chr1_1:28873267-28873286 Msa0017420:intron 35.0%
TTGGTTCAGAGAATCTCTTA+CGG - chr1_1:28873355-28873374 None:intergenic 35.0%
! CTCAATCATTGGTAATTGAC+AGG - chr1_1:28873403-28873422 None:intergenic 35.0%
AATTGCAGCATTAAGATCTG+TGG + chr1_1:28873781-28873800 Msa0017420:intron 35.0%
AGAGCTTATCCAAATTCAAG+TGG - chr1_1:28873811-28873830 None:intergenic 35.0%
! ATAATGGAGAACTGTTTCAG+GGG - chr1_1:28874003-28874022 None:intergenic 35.0%
! CATAATGGAGAACTGTTTCA+GGG - chr1_1:28874004-28874023 None:intergenic 35.0%
! TCATAATGGAGAACTGTTTC+AGG - chr1_1:28874005-28874024 None:intergenic 35.0%
! GGACAGAAACTTTTCATCAA+AGG - chr1_1:28874606-28874625 None:intergenic 35.0%
! ACTACTACAATGTATTGGTC+AGG + chr1_1:28874631-28874650 Msa0017420:intron 35.0%
! GGCTTAAAACTGCAGATTTT+TGG + chr1_1:28874802-28874821 Msa0017420:intron 35.0%
! ACAGTGTTATTGATTGCGAA+TGG - chr1_1:28874845-28874864 None:intergenic 35.0%
! TGTCTCTTGCTTTATTACCA+AGG + chr1_1:28874862-28874881 Msa0017420:intron 35.0%
CAGTTTCTGTTTAAACTTCC+TGG + chr1_1:28874902-28874921 Msa0017420:intron 35.0%
CATCAACCAAATCATTTGCT+GGG - chr1_1:28875066-28875085 None:intergenic 35.0%
ACATCAACCAAATCATTTGC+TGG - chr1_1:28875067-28875086 None:intergenic 35.0%
ACAAATAACCTGTAGCAAGA+TGG - chr1_1:28875097-28875116 None:intergenic 35.0%
!!! ATGCTGATTCCGGAATATTT+TGG - chr1_1:28875465-28875484 None:intergenic 35.0%
!!! TATCTGTTTTTTCGAGAGAG+AGG - chr1_1:28875764-28875783 None:intergenic 35.0%
! GACTTTTCGCTGTATTATTC+AGG + chr1_1:28875785-28875804 Msa0017420:intron 35.0%
! CTTTTCGCTGTATTATTCAG+GGG + chr1_1:28875787-28875806 Msa0017420:intron 35.0%
! TTTTCGCTGTATTATTCAGG+GGG + chr1_1:28875788-28875807 Msa0017420:intron 35.0%
TTAACAGTCTCCATGACAAA+TGG - chr1_1:28875822-28875841 None:intergenic 35.0%
ATTTGTCATGGAGACTGTTA+AGG + chr1_1:28875821-28875840 Msa0017420:CDS 35.0%
! GAAATGGATTTATCTCTCCA+TGG + chr1_1:28876080-28876099 Msa0017420:intron 35.0%
AATGTGAAGTTAACTTACCG+TGG + chr1_1:28876106-28876125 Msa0017420:intron 35.0%
TTTGCTTTCTATGTTCAGGT+TGG + chr1_1:28876382-28876401 Msa0017420:intron 35.0%
CGCTTGATTATCATACCATT+CGG + chr1_1:28876434-28876453 Msa0017420:CDS 35.0%
TACGTACAAATAGTTCCGAA+TGG - chr1_1:28876452-28876471 None:intergenic 35.0%
GGAACTATTTGTACGTAAAC+CGG + chr1_1:28876455-28876474 Msa0017420:CDS 35.0%
! CTTTTGCATCAAAGTGAAGA+TGG - chr1_1:28876522-28876541 None:intergenic 35.0%
GTTGAAACATAAATGGTTGC+AGG + chr1_1:28876559-28876578 Msa0017420:intron 35.0%
TCTCAGAGAAGTGATTCTAA+AGG + chr1_1:28876658-28876677 Msa0017420:exon 35.0%
TTCATGGTACACAATACAAG+GGG + chr1_1:28876864-28876883 Msa0017420:three_prime_UTR 35.0%
AGCACGAATGGATAGAGAAA+GGG - chr1_1:28869085-28869104 None:intergenic 40.0%
AAGCACGAATGGATAGAGAA+AGG - chr1_1:28869086-28869105 None:intergenic 40.0%
! TGAAGAAGAAGAAGCACGAA+TGG - chr1_1:28869097-28869116 None:intergenic 40.0%
GCTTCTTCTTCTTCATCACA+AGG + chr1_1:28869102-28869121 Msa0017420:CDS 40.0%
CATGCTATGAACCACTGTTA+CGG + chr1_1:28869159-28869178 Msa0017420:intron 40.0%
TCATCAAATTAGGCATGTCC+TGG - chr1_1:28869327-28869346 None:intergenic 40.0%
ACACGGACACTCATCAAATT+AGG - chr1_1:28869337-28869356 None:intergenic 40.0%
GAGAAAAGAGAAGTGAAGGA+AGG - chr1_1:28869378-28869397 None:intergenic 40.0%
CTGCTACCAAAACAAGAAGA+AGG - chr1_1:28869414-28869433 None:intergenic 40.0%
!!! TCTCCAGTCCTGTTTTGAAA+TGG - chr1_1:28869443-28869462 None:intergenic 40.0%
CAAAACAGGACTGGAGAAAA+AGG + chr1_1:28869446-28869465 Msa0017420:CDS 40.0%
! GACTGCATTGATCTTTAGCA+GGG - chr1_1:28869501-28869520 None:intergenic 40.0%
CTGCTAAAGATCAATGCAGT+CGG + chr1_1:28869500-28869519 Msa0017420:CDS 40.0%
GTTAGCGTTATGTCAGATGT+AGG + chr1_1:28869758-28869777 Msa0017420:intron 40.0%
GGTAGCAGAGCTATTCATTT+GGG + chr1_1:28869919-28869938 Msa0017420:intron 40.0%
! TTCATTTGGGTTACTTGGGT+TGG + chr1_1:28869932-28869951 Msa0017420:intron 40.0%
!! GATTATCTTCGGTGCCAATT+TGG + chr1_1:28870011-28870030 Msa0017420:intron 40.0%
! TCTCTTTTCAATGCGAGACT+CGG - chr1_1:28870133-28870152 None:intergenic 40.0%
CTAACTCATCCTTACAACAC+CGG - chr1_1:28870201-28870220 None:intergenic 40.0%
GCCAAGGGTAAAAACATAGT+AGG + chr1_1:28870221-28870240 Msa0017420:intron 40.0%
! ATCAATTAGTCTGCACCTAG+TGG + chr1_1:28870416-28870435 Msa0017420:intron 40.0%
ACCTTAGATGAGACCTACTT+AGG + chr1_1:28870866-28870885 Msa0017420:CDS 40.0%
CCTTAGATGAGACCTACTTA+GGG + chr1_1:28870867-28870886 Msa0017420:CDS 40.0%
CTTAGATGAGACCTACTTAG+GGG + chr1_1:28870868-28870887 Msa0017420:CDS 40.0%
ATGAGGAACTTCTGTATGCT+CGG + chr1_1:28870894-28870913 Msa0017420:CDS 40.0%
GTTTCTCTGGTATGTGACAT+TGG + chr1_1:28871143-28871162 Msa0017420:intron 40.0%
! TTGAAAGAATACGTGCCGTT+TGG + chr1_1:28871242-28871261 Msa0017420:intron 40.0%
CTGCCACTATTCTATAATCC+AGG + chr1_1:28871294-28871313 Msa0017420:intron 40.0%
GAAAATGCGGAACAATTTCC+TGG - chr1_1:28871315-28871334 None:intergenic 40.0%
AAAGTATGATAGGACCAGAC+TGG - chr1_1:28871348-28871367 None:intergenic 40.0%
CTGGTCCTATCATACTTTGA+TGG + chr1_1:28871350-28871369 Msa0017420:intron 40.0%
AGGACTGTCAAATCAAGCAA+TGG - chr1_1:28871536-28871555 None:intergenic 40.0%
!! GTGAAAAAAATGATGGGCCT+TGG + chr1_1:28871585-28871604 Msa0017420:intron 40.0%
GACATTGAAACCTTACTCCA+AGG - chr1_1:28871605-28871624 None:intergenic 40.0%
ATGCTATCATGGAGAGCTTA+TGG + chr1_1:28871755-28871774 Msa0017420:intron 40.0%
AACCTTGCTAAAACAGGTCT+GGG - chr1_1:28872302-28872321 None:intergenic 40.0%
!! AGTGCAAGGGTATTAAGGTT+AGG - chr1_1:28872460-28872479 None:intergenic 40.0%
!! CAACAAGTGCAAGGGTATTA+AGG - chr1_1:28872465-28872484 None:intergenic 40.0%
! TAATACCCTTGCACTTGTTG+AGG + chr1_1:28872465-28872484 Msa0017420:CDS 40.0%
ACAAACCTCAACAAGTGCAA+GGG - chr1_1:28872473-28872492 None:intergenic 40.0%
CGTTTCGTTCAAATGGATGA+AGG + chr1_1:28872622-28872641 Msa0017420:intron 40.0%
GATGAAGGTTACAATCCACT+CGG + chr1_1:28872637-28872656 Msa0017420:intron 40.0%
!! TCTAGGGTGTTGTAGTGAAT+TGG + chr1_1:28872668-28872687 Msa0017420:intron 40.0%
!! CAATCTGGTTTCCCTAGTTT+TGG + chr1_1:28873008-28873027 Msa0017420:intron 40.0%
TTTGTTAGGATGCTGGCAAT+GGG - chr1_1:28873041-28873060 None:intergenic 40.0%
! TTTTGTTAGGATGCTGGCAA+TGG - chr1_1:28873042-28873061 None:intergenic 40.0%
!! GTGATGTTTTGTTAGGATGC+TGG - chr1_1:28873048-28873067 None:intergenic 40.0%
AACTTGTAGTGAGTCCAACA+AGG + chr1_1:28873300-28873319 Msa0017420:intron 40.0%
AACCAGTCACAATGGAGAAA+GGG - chr1_1:28873735-28873754 None:intergenic 40.0%
TAACCAGTCACAATGGAGAA+AGG - chr1_1:28873736-28873755 None:intergenic 40.0%
AAGCTATCTCAGGAAGCTAA+TGG - chr1_1:28874193-28874212 None:intergenic 40.0%
TAGCTTCCTGAGATAGCTTA+CGG + chr1_1:28874194-28874213 Msa0017420:intron 40.0%
CAATTTCCGTAAGCTATCTC+AGG - chr1_1:28874203-28874222 None:intergenic 40.0%
TTTATCCAAACATGGCCCTA+GGG + chr1_1:28874333-28874352 Msa0017420:intron 40.0%
TCGTAGTAGTTAGGATCAGT+TGG + chr1_1:28874450-28874469 Msa0017420:intron 40.0%
CGTAGTAGTTAGGATCAGTT+GGG + chr1_1:28874451-28874470 Msa0017420:intron 40.0%
GTAGTAGTTAGGATCAGTTG+GGG + chr1_1:28874452-28874471 Msa0017420:intron 40.0%
TAGAAAAGTCTGAGGACAGT+TGG - chr1_1:28874730-28874749 None:intergenic 40.0%
! AGACTTTTCTACAACCTCCA+TGG + chr1_1:28874739-28874758 Msa0017420:intron 40.0%
CAACCTTCACAAATAGACCA+TGG - chr1_1:28874759-28874778 None:intergenic 40.0%
!!! AGATTTTTGGGTTTCCTCCA+TGG + chr1_1:28874815-28874834 Msa0017420:intron 40.0%
! GTGTTATTGATTGCGAATGG+TGG - chr1_1:28874842-28874861 None:intergenic 40.0%
TTCTGTTTAAACTTCCTGGC+AGG + chr1_1:28874906-28874925 Msa0017420:intron 40.0%
! GTTCACTTGAAGCATTTGGA+CGG + chr1_1:28874928-28874947 Msa0017420:CDS 40.0%
TTTGCTGGGAGACAGAAATA+AGG - chr1_1:28875052-28875071 None:intergenic 40.0%
TTATTGCTCCATCTTGCTAC+AGG + chr1_1:28875086-28875105 Msa0017420:CDS 40.0%
! TGAGTTTAGAGTCACGAGTT+TGG + chr1_1:28875125-28875144 Msa0017420:intron 40.0%
!! GGTGTGATATTTTCAGGACT+TGG + chr1_1:28875419-28875438 Msa0017420:intron 40.0%
!! TATTTTCAGGACTTGGTCGT+TGG + chr1_1:28875426-28875445 Msa0017420:intron 40.0%
! GACTTGGTCGTTGGATATAT+GGG + chr1_1:28875435-28875454 Msa0017420:CDS 40.0%
!! ATGTTGTGTCATGCTGATTC+CGG - chr1_1:28875475-28875494 None:intergenic 40.0%
TAAACCGCAATTGACAACAC+TGG - chr1_1:28875970-28875989 None:intergenic 40.0%
GTTAACTTCACATTCTCCCA+TGG - chr1_1:28876100-28876119 None:intergenic 40.0%
! TGTCTGGTTTAATCAGGAAG+AGG + chr1_1:28876199-28876218 Msa0017420:intron 40.0%
!!! TTTCCAACAAATTTTGGGGC+AGG - chr1_1:28876235-28876254 None:intergenic 40.0%
! TGGCTTTGCTTTCTATGTTC+AGG + chr1_1:28876378-28876397 Msa0017420:intron 40.0%
!! TATGTTCAGGTTGGTCCAAA+GGG + chr1_1:28876391-28876410 Msa0017420:intron 40.0%
CTTGCAAATTCAATGCCCTT+TGG - chr1_1:28876409-28876428 None:intergenic 40.0%
ATTTGTACGTAAACCGGTTG+TGG + chr1_1:28876461-28876480 Msa0017420:CDS 40.0%
TTTGTACGTAAACCGGTTGT+GGG + chr1_1:28876462-28876481 Msa0017420:CDS 40.0%
GTCAAAACTTTGTCTCTAGC+TGG + chr1_1:28876777-28876796 Msa0017420:three_prime_UTR 40.0%
GCACGAATGGATAGAGAAAG+GGG - chr1_1:28869084-28869103 None:intergenic 45.0%
AATTAGGCATGTCCTGGACA+CGG - chr1_1:28869321-28869340 None:intergenic 45.0%
TGCATGCAGACTATGCAACA+CGG - chr1_1:28869354-28869373 None:intergenic 45.0%
!!! CCAGTCCTGTTTTGAAATGG+AGG - chr1_1:28869440-28869459 None:intergenic 45.0%
CCTCCATTTCAAAACAGGAC+TGG + chr1_1:28869437-28869456 Msa0017420:CDS 45.0%
! GCATTGATCTTTAGCAGGGT+AGG - chr1_1:28869497-28869516 None:intergenic 45.0%
! CGACTGCATTGATCTTTAGC+AGG - chr1_1:28869502-28869521 None:intergenic 45.0%
AAAGATCAATGCAGTCGGTG+TGG + chr1_1:28869505-28869524 Msa0017420:CDS 45.0%
! TGTGCTTAGCTCAGTTGGTA+AGG + chr1_1:28869792-28869811 Msa0017420:intron 45.0%
!!! TACATCTTTTGGTGGTGTCC+GGG - chr1_1:28869854-28869873 None:intergenic 45.0%
!!! CTACATCTTTTGGTGGTGTC+CGG - chr1_1:28869855-28869874 None:intergenic 45.0%
GGACACCACCAAAAGATGTA+GGG + chr1_1:28869854-28869873 Msa0017420:intron 45.0%
CGGTAGCAGAGCTATTCATT+TGG + chr1_1:28869918-28869937 Msa0017420:intron 45.0%
! TTAAGGAGGAGCATACTCCA+AGG - chr1_1:28869979-28869998 None:intergenic 45.0%
TTGGAGTATGCTCCTCCTTA+AGG + chr1_1:28869978-28869997 Msa0017420:intron 45.0%
ATGCTCCTCCTTAAGGTCTT+AGG + chr1_1:28869985-28870004 Msa0017420:intron 45.0%
TCGAACCTAAGACCTTAAGG+AGG - chr1_1:28869993-28870012 None:intergenic 45.0%
CTAAACTAGCCCACCCAAAT+TGG - chr1_1:28870028-28870047 None:intergenic 45.0%
! CTCTTTTCAATGCGAGACTC+GGG - chr1_1:28870132-28870151 None:intergenic 45.0%
AGAGACACTCCTCATCTTAG+AGG + chr1_1:28870175-28870194 Msa0017420:intron 45.0%
!! CGGTGTTGTAAGGATGAGTT+AGG + chr1_1:28870199-28870218 Msa0017420:intron 45.0%
TGTAAGGATGAGTTAGGCCA+AGG + chr1_1:28870205-28870224 Msa0017420:intron 45.0%
GTAAGGATGAGTTAGGCCAA+GGG + chr1_1:28870206-28870225 Msa0017420:intron 45.0%
GAACCTGTTGTTCATGGTAG+AGG + chr1_1:28870830-28870849 Msa0017420:CDS 45.0%
CTTCCTCTACCATGAACAAC+AGG - chr1_1:28870836-28870855 None:intergenic 45.0%
CCCTAAGTAGGTCTCATCTA+AGG - chr1_1:28870870-28870889 None:intergenic 45.0%
TTCCTCATAGACCCCTAAGT+AGG - chr1_1:28870882-28870901 None:intergenic 45.0%
CGGAAACTTAACCCTGTTGA+AGG + chr1_1:28870914-28870933 Msa0017420:CDS 45.0%
!!! TGGTTTTTTGGTGGACCTCT+TGG + chr1_1:28871085-28871104 Msa0017420:intron 45.0%
CTCTGGTATGTGACATTGGT+AGG + chr1_1:28871147-28871166 Msa0017420:intron 45.0%
ATTGGTAGGTAACCCCTTTG+TGG + chr1_1:28871161-28871180 Msa0017420:intron 45.0%
!! AATACGTGCCGTTTGGCATT+GGG + chr1_1:28871249-28871268 Msa0017420:intron 45.0%
GAATAGTGGCAGACCTTTGA+GGG - chr1_1:28871286-28871305 None:intergenic 45.0%
AGAATAGTGGCAGACCTTTG+AGG - chr1_1:28871287-28871306 None:intergenic 45.0%
GGAGGCCATCAAAGTATGAT+AGG - chr1_1:28871358-28871377 None:intergenic 45.0%
!! AAATGATGGGCCTTGGAGTA+AGG + chr1_1:28871592-28871611 Msa0017420:intron 45.0%
GTCAATGCCTAATGCCTTGT+TGG + chr1_1:28871622-28871641 Msa0017420:intron 45.0%
TTCATAGGAGCTCAATGGAC+TGG + chr1_1:28872032-28872051 Msa0017420:intron 45.0%
CAACCTTGCTAAAACAGGTC+TGG - chr1_1:28872303-28872322 None:intergenic 45.0%
!!! CAGACCTGTTTTAGCAAGGT+TGG + chr1_1:28872301-28872320 Msa0017420:intron 45.0%
GAAGCCAACCTTGCTAAAAC+AGG - chr1_1:28872308-28872327 None:intergenic 45.0%
TTAGCAGCCATCACTTCTTC+TGG - chr1_1:28872415-28872434 None:intergenic 45.0%
GAAGAAGTGATGGCTGCTAA+AGG + chr1_1:28872415-28872434 Msa0017420:CDS 45.0%
CACAAACCTCAACAAGTGCA+AGG - chr1_1:28872474-28872493 None:intergenic 45.0%
AAATCTACGGGCGAACAATC+TGG + chr1_1:28872993-28873012 Msa0017420:intron 45.0%
TGGGGGATCTTCCAAAACTA+GGG - chr1_1:28873022-28873041 None:intergenic 45.0%
ATGGGGGATCTTCCAAAACT+AGG - chr1_1:28873023-28873042 None:intergenic 45.0%
TTGTTAGGATGCTGGCAATG+GGG - chr1_1:28873040-28873059 None:intergenic 45.0%
TTGAAGGACCAGATGCTCTT+AGG - chr1_1:28873172-28873191 None:intergenic 45.0%
TTTCATCATTGACAGGCTGC+AGG + chr1_1:28873624-28873643 Msa0017420:intron 45.0%
! GTCAAGCGTCTTCTTTTCTG+TGG + chr1_1:28873648-28873667 Msa0017420:CDS 45.0%
! CGTCTTCTTTTCTGTGGTGT+AGG + chr1_1:28873654-28873673 Msa0017420:CDS 45.0%
CCTTTACAGTAGTGGTACCT+TGG - chr1_1:28873689-28873708 None:intergenic 45.0%
! CCAAGGTACCACTACTGTAA+AGG + chr1_1:28873686-28873705 Msa0017420:intron 45.0%
TTCCCTTTCTCCATTGTGAC+TGG + chr1_1:28873730-28873749 Msa0017420:intron 45.0%
! TGTGGAGCACCACTTGAATT+TGG + chr1_1:28873799-28873818 Msa0017420:CDS 45.0%
AGGCACAAATTGTGGTATGC+AGG + chr1_1:28873838-28873857 Msa0017420:intron 45.0%
CCATTGTCCACTGTCGAATA+AGG - chr1_1:28873936-28873955 None:intergenic 45.0%
CCTTATTCGACAGTGGACAA+TGG + chr1_1:28873933-28873952 Msa0017420:intron 45.0%
AAACTTATCCAGTCCTTCCC+TGG - chr1_1:28873961-28873980 None:intergenic 45.0%
GTTTATCCAAACATGGCCCT+AGG + chr1_1:28874332-28874351 Msa0017420:intron 45.0%
!! GTAGACAGCTTGGTGTAACA+TGG + chr1_1:28874357-28874376 Msa0017420:intron 45.0%
AAAGGGAGCTCGTAGTAGTT+AGG + chr1_1:28874441-28874460 Msa0017420:intron 45.0%
GGAGGTTGTAGAAAAGTCTG+AGG - chr1_1:28874738-28874757 None:intergenic 45.0%
CCTTCACAAATAGACCATGG+AGG - chr1_1:28874756-28874775 None:intergenic 45.0%
CCTCCATGGTCTATTTGTGA+AGG + chr1_1:28874753-28874772 Msa0017420:intron 45.0%
TAAGCCATCATGTAACGCCA+TGG - chr1_1:28874788-28874807 None:intergenic 45.0%
! GCAGGTTCACTTGAAGCATT+TGG + chr1_1:28874924-28874943 Msa0017420:intron 45.0%
TTTGGACGGTCGTATTGAAG+AGG + chr1_1:28874942-28874961 Msa0017420:CDS 45.0%
CTGTCTCCCAGCAAATGATT+TGG + chr1_1:28875057-28875076 Msa0017420:CDS 45.0%
! GGACTTGGTCGTTGGATATA+TGG + chr1_1:28875434-28875453 Msa0017420:intron 45.0%
ATGGGCGTGCCAAAATATTC+CGG + chr1_1:28875453-28875472 Msa0017420:CDS 45.0%
TGAAACGACAGGAATGAACG+TGG + chr1_1:28875649-28875668 Msa0017420:intron 45.0%
GCTGTATTATTCAGGGGGAT+AGG + chr1_1:28875793-28875812 Msa0017420:intron 45.0%
TGGACCAGTGTTGTCAATTG+CGG + chr1_1:28875963-28875982 Msa0017420:intron 45.0%
!! CTATGTTCAGGTTGGTCCAA+AGG + chr1_1:28876390-28876409 Msa0017420:intron 45.0%
TTGTACGTAAACCGGTTGTG+GGG + chr1_1:28876463-28876482 Msa0017420:CDS 45.0%
TAAATGGTTGCAGGGCTGAT+AGG + chr1_1:28876568-28876587 Msa0017420:intron 45.0%
GGATTACATGCTCCAATCAG+TGG + chr1_1:28876679-28876698 Msa0017420:three_prime_UTR 45.0%
!! TGAATTATAAAAAAATAATA+CGG + chr1_1:28869898-28869917 Msa0017420:intron 5.0%
! AGCGAACACCGATGATGATG+TGG - chr1_1:28869011-28869030 None:intergenic 50.0%
TGAACCACTGTTACGGACAC+CGG + chr1_1:28869166-28869185 Msa0017420:intron 50.0%
GCTTGTGCTTTCTTGGGAGA+TGG + chr1_1:28869565-28869584 Msa0017420:CDS 50.0%
GTCTGTGTGCTTAGCTCAGT+TGG + chr1_1:28869787-28869806 Msa0017420:intron 50.0%
!!! ACATCTTTTGGTGGTGTCCG+GGG - chr1_1:28869853-28869872 None:intergenic 50.0%
CGGACACCACCAAAAGATGT+AGG + chr1_1:28869853-28869872 Msa0017420:intron 50.0%
!! TTGGGTTACTTGGGTTGGTC+TGG + chr1_1:28869937-28869956 Msa0017420:intron 50.0%
! GTGGTGTTAACGTGAGACCT+TGG + chr1_1:28869959-28869978 Msa0017420:intron 50.0%
!! ATCTTCGGTGCCAATTTGGG+TGG + chr1_1:28870015-28870034 Msa0017420:intron 50.0%
!! TCTTCGGTGCCAATTTGGGT+GGG + chr1_1:28870016-28870035 Msa0017420:intron 50.0%
ACACTCCTCATCTTAGAGGC+CGG + chr1_1:28870179-28870198 Msa0017420:intron 50.0%
!! TCTTAGAGGCCGGTGTTGTA+AGG + chr1_1:28870189-28870208 Msa0017420:intron 50.0%
ACAGCTCCTGCTTGAAGGAA+AGG + chr1_1:28870286-28870305 Msa0017420:intron 50.0%
AGGGTTCCTTTCCTTCAAGC+AGG - chr1_1:28870295-28870314 None:intergenic 50.0%
GACCTACTTAGGGGTCTATG+AGG + chr1_1:28870877-28870896 Msa0017420:CDS 50.0%
!! GAATACGTGCCGTTTGGCAT+TGG + chr1_1:28871248-28871267 Msa0017420:intron 50.0%
!! ATACGTGCCGTTTGGCATTG+GGG + chr1_1:28871250-28871269 Msa0017420:intron 50.0%
!!! CTCCCAGACCTGTTTTAGCA+AGG + chr1_1:28872297-28872316 Msa0017420:CDS 50.0%
CAGGACACCAGAAGAAGTGA+TGG + chr1_1:28872405-28872424 Msa0017420:intron 50.0%
GAAGGTTACAATCCACTCGG+CGG + chr1_1:28872640-28872659 Msa0017420:intron 50.0%
AATGCTCTAGCGACTAGCGT+AGG + chr1_1:28872929-28872948 Msa0017420:intron 50.0%
TGTTAGGATGCTGGCAATGG+GGG - chr1_1:28873039-28873058 None:intergenic 50.0%
ACTGTCGTAACTCGGACTGA+AGG - chr1_1:28873124-28873143 None:intergenic 50.0%
!! CGACATTGCCTAAGAGCATC+TGG + chr1_1:28873161-28873180 Msa0017420:intron 50.0%
TTTCTGTGGTGTAGGTTGCC+AGG + chr1_1:28873662-28873681 Msa0017420:CDS 50.0%
GACAGTGGACAATGGAACCA+GGG + chr1_1:28873941-28873960 Msa0017420:intron 50.0%
! CTTGGTGTAACATGGCCCTA+GGG + chr1_1:28874365-28874384 Msa0017420:intron 50.0%
!! TGATTGCGAATGGTGGACCA+TGG - chr1_1:28874835-28874854 None:intergenic 50.0%
ATGCTTCAAGTGAACCTGCC+AGG - chr1_1:28874923-28874942 None:intergenic 50.0%
AACTCGGTCGTCCTAAGTTC+AGG - chr1_1:28875304-28875323 None:intergenic 50.0%
GGATAGGCGACCATTTGTCA+TGG + chr1_1:28875809-28875828 Msa0017420:CDS 50.0%
!!! ACAAATTTTGGGGCAGGCTG+AGG - chr1_1:28876229-28876248 None:intergenic 50.0%
CAGCCTGCCCCAAAATTTGT+TGG + chr1_1:28876229-28876248 Msa0017420:CDS 50.0%
ACCTTTCCTTTCCCCACAAC+CGG - chr1_1:28876477-28876496 None:intergenic 50.0%
CATGCTCCAATCAGTGGCAT+AGG + chr1_1:28876685-28876704 Msa0017420:three_prime_UTR 50.0%
AGGTCAAAGCCTATCCCACC+AGG + chr1_1:28869466-28869485 Msa0017420:CDS 55.0%
TCAAAGCCTATCCCACCAGG+TGG + chr1_1:28869469-28869488 Msa0017420:CDS 55.0%
TAGGTTCCACCTGGTGGGAT+AGG - chr1_1:28869478-28869497 None:intergenic 55.0%
TTAGCAGGGTAGGTTCCACC+TGG - chr1_1:28869487-28869506 None:intergenic 55.0%
!! GGTTACTTGGGTTGGTCTGG+TGG + chr1_1:28869940-28869959 Msa0017420:intron 55.0%
!! CAACACCGGCCTCTAAGATG+AGG - chr1_1:28870187-28870206 None:intergenic 55.0%
GCACAACAGCTCCTGCTTGA+AGG + chr1_1:28870281-28870300 Msa0017420:intron 55.0%
!! TACGTGCCGTTTGGCATTGG+GGG + chr1_1:28871251-28871270 Msa0017420:intron 55.0%
CTGGGAGCAAATCTGTCGTC+AGG - chr1_1:28872284-28872303 None:intergenic 55.0%
TCCACTCGGCGGTTCTTTCT+AGG + chr1_1:28872651-28872670 Msa0017420:intron 55.0%
CCACTCGGCGGTTCTTTCTA+GGG + chr1_1:28872652-28872671 Msa0017420:intron 55.0%
CAGTAGTGGTACCTTGGACC+TGG - chr1_1:28873683-28873702 None:intergenic 55.0%
CGACAGTGGACAATGGAACC+AGG + chr1_1:28873940-28873959 Msa0017420:intron 55.0%
GTGGACAATGGAACCAGGGA+AGG + chr1_1:28873945-28873964 Msa0017420:intron 55.0%
CAATGGAACCAGGGAAGGAC+TGG + chr1_1:28873950-28873969 Msa0017420:CDS 55.0%
ACCAAGCTGTCTACGCCCTA+GGG - chr1_1:28874351-28874370 None:intergenic 55.0%
!! GCTTGGTGTAACATGGCCCT+AGG + chr1_1:28874364-28874383 Msa0017420:intron 55.0%
ATCAAGCTGTCCACGCCCTA+GGG - chr1_1:28874383-28874402 None:intergenic 55.0%
GTCTGAGGACAGTTGGCAAG+AGG - chr1_1:28874723-28874742 None:intergenic 55.0%
TGTGAAGGTTGTCTGCGCCA+TGG + chr1_1:28874768-28874787 Msa0017420:intron 55.0%
TGCGCCATGGCGTTACATGA+TGG + chr1_1:28874781-28874800 Msa0017420:intron 55.0%
!! TTGCGAATGGTGGACCATGG+AGG - chr1_1:28874832-28874851 None:intergenic 55.0%
!!! AATTTTGGGGCAGGCTGAGG+AGG - chr1_1:28876226-28876245 None:intergenic 55.0%
CGTAAACCGGTTGTGGGGAA+AGG + chr1_1:28876468-28876487 Msa0017420:CDS 55.0%
ACCGGTTGTGGGGAAAGGAA+AGG + chr1_1:28876473-28876492 Msa0017420:CDS 55.0%
GGCACACCTATGCCACTGAT+TGG - chr1_1:28876694-28876713 None:intergenic 55.0%
GTGTCCGGTGTCCGTAACAG+TGG - chr1_1:28869173-28869192 None:intergenic 60.0%
CAGGGTAGGTTCCACCTGGT+GGG - chr1_1:28869483-28869502 None:intergenic 60.0%
! AAGGTCTGGGGTTCGAACCC+CGG + chr1_1:28869833-28869852 Msa0017420:intron 60.0%
!! ACGTGCCGTTTGGCATTGGG+GGG + chr1_1:28871252-28871271 Msa0017420:intron 60.0%
TCCTGCCCCCCAATGCCAAA+CGG - chr1_1:28871260-28871279 None:intergenic 60.0%
GGGGGCAGGAAAACCCTCAA+AGG + chr1_1:28871270-28871289 Msa0017420:intron 60.0%
CCCTAGAAAGAACCGCCGAG+TGG - chr1_1:28872655-28872674 None:intergenic 60.0%
GGTGTAGGTTGCCAGGTCCA+AGG + chr1_1:28873669-28873688 Msa0017420:CDS 60.0%
CTACGCCCTAGGGCCATGTT+TGG - chr1_1:28874341-28874360 None:intergenic 60.0%
CACCAAGCTGTCTACGCCCT+AGG - chr1_1:28874352-28874371 None:intergenic 60.0%
TGTAACATGGCCCTAGGGCG+TGG + chr1_1:28874370-28874389 Msa0017420:intron 60.0%
CATCAAGCTGTCCACGCCCT+AGG - chr1_1:28874384-28874403 None:intergenic 60.0%
!! GGTGTCGGCGCGTTAGTGTC+CGG - chr1_1:28869188-28869207 None:intergenic 65.0%
! TGGGCGTCGTATCCGTGTCC+AGG + chr1_1:28869306-28869325 Msa0017420:intron 65.0%
GCAGGGTAGGTTCCACCTGG+TGG - chr1_1:28869484-28869503 None:intergenic 65.0%
GCCCTAGGGCGTAGACAGCT+TGG + chr1_1:28874347-28874366 Msa0017420:intron 65.0%
! GCCGTTTGGCATTGGGGGGC+AGG + chr1_1:28871256-28871275 Msa0017420:intron 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 28868931 28876959 28868931 ID=Msa0017420;Name=Msa0017420
chr1_1 mRNA 28868931 28876959 28868931 ID=Msa0017420-mRNA-1;Parent=Msa0017420;Name=Msa0017420-mRNA-1;_AED=0.23;_eAED=0.23;_QI=129|0.94|0.94|1|1|1|18|288|450
chr1_1 exon 28868931 28869123 28868931 ID=Msa0017420-mRNA-1:exon:9627;Parent=Msa0017420-mRNA-1
chr1_1 exon 28869431 28869603 28869431 ID=Msa0017420-mRNA-1:exon:9628;Parent=Msa0017420-mRNA-1
chr1_1 exon 28870824 28870935 28870824 ID=Msa0017420-mRNA-1:exon:9629;Parent=Msa0017420-mRNA-1
chr1_1 exon 28872039 28872123 28872039 ID=Msa0017420-mRNA-1:exon:9630;Parent=Msa0017420-mRNA-1
chr1_1 exon 28872277 28872318 28872277 ID=Msa0017420-mRNA-1:exon:9631;Parent=Msa0017420-mRNA-1
chr1_1 exon 28872408 28872486 28872408 ID=Msa0017420-mRNA-1:exon:9632;Parent=Msa0017420-mRNA-1
chr1_1 exon 28873639 28873690 28873639 ID=Msa0017420-mRNA-1:exon:9633;Parent=Msa0017420-mRNA-1
chr1_1 exon 28873789 28873851 28873789 ID=Msa0017420-mRNA-1:exon:9634;Parent=Msa0017420-mRNA-1
chr1_1 exon 28873946 28874043 28873946 ID=Msa0017420-mRNA-1:exon:9635;Parent=Msa0017420-mRNA-1
chr1_1 exon 28874928 28874963 28874928 ID=Msa0017420-mRNA-1:exon:9636;Parent=Msa0017420-mRNA-1
chr1_1 exon 28875046 28875107 28875046 ID=Msa0017420-mRNA-1:exon:9637;Parent=Msa0017420-mRNA-1
chr1_1 exon 28875224 28875251 28875224 ID=Msa0017420-mRNA-1:exon:9638;Parent=Msa0017420-mRNA-1
chr1_1 exon 28875435 28875514 28875435 ID=Msa0017420-mRNA-1:exon:9639;Parent=Msa0017420-mRNA-1
chr1_1 exon 28875660 28875729 28875660 ID=Msa0017420-mRNA-1:exon:9640;Parent=Msa0017420-mRNA-1
chr1_1 exon 28875807 28875864 28875807 ID=Msa0017420-mRNA-1:exon:9641;Parent=Msa0017420-mRNA-1
chr1_1 exon 28876215 28876279 28876215 ID=Msa0017420-mRNA-1:exon:9642;Parent=Msa0017420-mRNA-1
chr1_1 exon 28876400 28876494 28876400 ID=Msa0017420-mRNA-1:exon:9643;Parent=Msa0017420-mRNA-1
chr1_1 exon 28876581 28876959 28876581 ID=Msa0017420-mRNA-1:exon:9644;Parent=Msa0017420-mRNA-1
chr1_1 five_prime_UTR 28868931 28869059 28868931 ID=Msa0017420-mRNA-1:five_prime_utr;Parent=Msa0017420-mRNA-1
chr1_1 CDS 28869060 28869123 28869060 ID=Msa0017420-mRNA-1:cds;Parent=Msa0017420-mRNA-1
chr1_1 CDS 28869431 28869603 28869431 ID=Msa0017420-mRNA-1:cds;Parent=Msa0017420-mRNA-1
chr1_1 CDS 28870824 28870935 28870824 ID=Msa0017420-mRNA-1:cds;Parent=Msa0017420-mRNA-1
chr1_1 CDS 28872039 28872123 28872039 ID=Msa0017420-mRNA-1:cds;Parent=Msa0017420-mRNA-1
chr1_1 CDS 28872277 28872318 28872277 ID=Msa0017420-mRNA-1:cds;Parent=Msa0017420-mRNA-1
chr1_1 CDS 28872408 28872486 28872408 ID=Msa0017420-mRNA-1:cds;Parent=Msa0017420-mRNA-1
chr1_1 CDS 28873639 28873690 28873639 ID=Msa0017420-mRNA-1:cds;Parent=Msa0017420-mRNA-1
chr1_1 CDS 28873789 28873851 28873789 ID=Msa0017420-mRNA-1:cds;Parent=Msa0017420-mRNA-1
chr1_1 CDS 28873946 28874043 28873946 ID=Msa0017420-mRNA-1:cds;Parent=Msa0017420-mRNA-1
chr1_1 CDS 28874928 28874963 28874928 ID=Msa0017420-mRNA-1:cds;Parent=Msa0017420-mRNA-1
chr1_1 CDS 28875046 28875107 28875046 ID=Msa0017420-mRNA-1:cds;Parent=Msa0017420-mRNA-1
chr1_1 CDS 28875224 28875251 28875224 ID=Msa0017420-mRNA-1:cds;Parent=Msa0017420-mRNA-1
chr1_1 CDS 28875435 28875514 28875435 ID=Msa0017420-mRNA-1:cds;Parent=Msa0017420-mRNA-1
chr1_1 CDS 28875660 28875729 28875660 ID=Msa0017420-mRNA-1:cds;Parent=Msa0017420-mRNA-1
chr1_1 CDS 28875807 28875864 28875807 ID=Msa0017420-mRNA-1:cds;Parent=Msa0017420-mRNA-1
chr1_1 CDS 28876215 28876279 28876215 ID=Msa0017420-mRNA-1:cds;Parent=Msa0017420-mRNA-1
chr1_1 CDS 28876400 28876494 28876400 ID=Msa0017420-mRNA-1:cds;Parent=Msa0017420-mRNA-1
chr1_1 CDS 28876581 28876671 28876581 ID=Msa0017420-mRNA-1:cds;Parent=Msa0017420-mRNA-1
chr1_1 three_prime_UTR 28876672 28876959 28876672 ID=Msa0017420-mRNA-1:three_prime_utr;Parent=Msa0017420-mRNA-1
Gene Sequence

>Msa0017420

ATGTCTTCTTTCTCTTCGGTACCCCTTTCTCTATCCATTCGTGCTTCTTCTTCTTCATCACAAGCAGAATCCTCCATTTCAAAACAGGACTGGAGAAAAAGGTCAAAGCCTATCCCACCAGGTGGAACCTACCCTGCTAAAGATCAATGCAGTCGGTGTGGATTGTGTGATACATATTATATTGCTCATGTTAAGAATGCTTGTGCTTTCTTGGGAGATGGAATGTCTAAAATTGAAAAATTGGAACCTGTTGTTCATGGTAGAGGAAGAAAAACTGATACCTTAGATGAGACCTACTTAGGGGTCTATGAGGAACTTCTGTATGCTCGGAAACTTAACCCTGTTGAAGGAGCTCAATGGACTGGTATAGTAACAACCATTGCAATTGAAATGCTTAAATCAGGCATGGTTGAAGCTGTCATTTGTGTACAAAGTGATCCTGACGACAGATTTGCTCCCAGACCTGTTTTAGCAAGGACACCAGAAGAAGTGATGGCTGCTAAAGGCGTCAAGCCAACATTATCTCCTAACCTTAATACCCTTGCACTTGTTGAGGCTGCAGGTGTCAAGCGTCTTCTTTTCTGTGGTGTAGGTTGCCAGGTCCAAGCATTAAGATCTGTGGAGCACCACTTGAATTTGGATAAGCTCTATGTTTTAGGCACAAATTGTGTGGACAATGGAACCAGGGAAGGACTGGATAAGTTTCTAAATGCTGCGAGCGATTCCCCTGAAACAGTTCTCCATTATGAGTTTATGCAAGATTACAAGGTTCACTTGAAGCATTTGGACGGTCGTATTGAAGAGGTTCCTTATTTCTGTCTCCCAGCAAATGATTTGGTTGATGTTATTGCTCCATCTTGCTACAGCTGTTTTGACTATACAAATGGTTTAGCAGACTTGGTCGTTGGATATATGGGCGTGCCAAAATATTCCGGAATCAGCATGACACAACATCCACAATATATTACTGTCAGGAATGAACGTGGAAGAGAGATGATGAGTCTTGTAAAGAACTTACTAGAGATTACTCCAACAGTTAATTCAGGGGATAGGCGACCATTTGTCATGGAGACTGTTAAGGCTGATGATAAAGCTAAATTTGGAAGAGGTCCTCCTCAGCCTGCCCCAAAATTTGTTGGAAACTTGATTGCATTTTTACTAAATTTGGTTGGTCCAAAGGGCATTGAATTTGCAAGATACTCGCTTGATTATCATACCATTCGGAACTATTTGTACGTAAACCGGTTGTGGGGAAAGGAAAGGGCTGATAGGCACATGCCTTCATATGCTAAGAAAATTGTGGATATGTACAACAAAAATGGTGAAATTGAAAAGATGCTCTCAGAGAAGTGA

Protein sequence

>Msa0017420

MSSFSSVPLSLSIRASSSSSQAESSISKQDWRKRSKPIPPGGTYPAKDQCSRCGLCDTYYIAHVKNACAFLGDGMSKIEKLEPVVHGRGRKTDTLDETYLGVYEELLYARKLNPVEGAQWTGIVTTIAIEMLKSGMVEAVICVQSDPDDRFAPRPVLARTPEEVMAAKGVKPTLSPNLNTLALVEAAGVKRLLFCGVGCQVQALRSVEHHLNLDKLYVLGTNCVDNGTREGLDKFLNAASDSPETVLHYEFMQDYKVHLKHLDGRIEEVPYFCLPANDLVDVIAPSCYSCFDYTNGLADLVVGYMGVPKYSGISMTQHPQYITVRNERGREMMSLVKNLLEITPTVNSGDRRPFVMETVKADDKAKFGRGPPQPAPKFVGNLIAFLLNLVGPKGIEFARYSLDYHTIRNYLYVNRLWGKERADRHMPSYAKKIVDMYNKNGEIEKMLSEK*