AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1267260


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1267260 MtrunA17_Chr1g0167641 90.217 460 23 10 1 451 1 447 0.0 817
Msa1267260 MtrunA17_Chr4g0076621 87.939 456 32 8 1 451 1 438 0.0 800
Msa1267260 MtrunA17_Chr4g0031761 81.275 251 20 10 1 237 1 238 7.80e-125 362
Msa1267260 MtrunA17_Chr8g0354941 72.687 227 43 2 131 357 14 221 7.54e-115 336
Msa1267260 MtrunA17_Chr4g0031751 94.545 110 6 0 255 364 1 110 1.17e-72 225
Msa1267260 MtrunA17_Chr8g0354951 86.316 95 13 0 357 451 2 96 3.52e-58 186
Msa1267260 MtrunA17_Chr8g0354931 52.525 99 36 4 17 107 8 103 8.64e-18 79.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1267260 AT1G28560.3 46.799 453 205 10 23 451 22 462 4.71e-128 379
Msa1267260 AT1G28560.1 51.170 342 146 7 114 451 51 375 2.18e-111 333
Msa1267260 AT1G28560.2 51.170 342 146 7 114 451 62 386 3.66e-111 333

Find 119 sgRNAs with CRISPR-Local

Find 337 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTGCTGCAACACGTATTT+TGG 0.102161 8_2:-72399877 Msa1267260:three_prime_UTR
AAATGGGAATATATTATAAA+TGG 0.182807 8_2:-72401879 Msa1267260:CDS
GAAACAACAACAAGTCTTTC+AGG 0.206736 8_2:-72403003 Msa1267260:CDS
GAAGAGATGAGTGACGTTTA+AGG 0.225559 8_2:+72403644 None:intergenic
AGACATATTGGAAACGTAAA+TGG 0.239480 8_2:+72403181 None:intergenic
ATATGTCTGGCCCAATTGTT+AGG 0.268431 8_2:-72403166 Msa1267260:CDS
CGATGAATTGGAATTGGAAT+TGG 0.317249 8_2:-72403255 Msa1267260:CDS
AACAATTGGGCCAGACATAT+TGG 0.330843 8_2:+72403169 None:intergenic
GGTCAACACAATGGCTCTTC+AGG 0.336128 8_2:-72402424 Msa1267260:CDS
AATAATGGATGACGATGAAT+TGG 0.339565 8_2:-72403267 Msa1267260:exon
ACCCAAGAGCTGTTAGTTCT+TGG 0.341773 8_2:-72402173 Msa1267260:CDS
TCAAAGCCATGTCCATTAAC+TGG 0.348465 8_2:+72403024 None:intergenic
TTGGAATTGGAATGTTCAAT+TGG 0.350971 8_2:-72403242 Msa1267260:CDS
AATGGGAATATATTATAAAT+GGG 0.355592 8_2:-72401878 Msa1267260:CDS
TTTCTTCTGTGCCTCCTCCT+TGG 0.362628 8_2:+72401899 None:intergenic
TCTCTGACGATTGCCGATAA+AGG 0.362707 8_2:+72403294 None:intergenic
ATGCCGATGATGTACAGAAT+TGG 0.370973 8_2:-72400215 Msa1267260:CDS
TTCAGTTGAAAAGTGACAAT+TGG 0.371285 8_2:+72400183 None:intergenic
CTCAAAGGATGATGTCTCTT+AGG 0.383507 8_2:-72402554 Msa1267260:CDS
AACTCTGCTGCTGCAGCATT+AGG 0.385029 8_2:+72402951 None:intergenic
GCTGGCCAACATGACCCTTC+TGG 0.386308 8_2:-72402086 Msa1267260:CDS
GTCAGAACAACAAGCTCTTC+AGG 0.391872 8_2:-72402835 Msa1267260:CDS
AGGAGGAGGCACAGAAGAAA+TGG 0.394153 8_2:-72401896 Msa1267260:CDS
TTTACAATTACTATCAAGAA+TGG 0.394641 8_2:+72402787 None:intergenic
TGATTAATTGTTGTTAGTCT+TGG 0.401698 8_2:-72399983 Msa1267260:exon
GGATGACGATGAATTGGAAT+TGG 0.402520 8_2:-72403261 Msa1267260:CDS
CACCAAGAACTAACAGCTCT+TGG 0.403372 8_2:+72402171 None:intergenic
AAAAGAGGAACCCTAACAAT+TGG 0.405666 8_2:+72403155 None:intergenic
TCTTAATCATTGAACCGGTT+CGG 0.426362 8_2:-72403463 Msa1267260:five_prime_UTR
CTGAACTGCTCGCTCAAAAC+CGG 0.432643 8_2:+72403409 None:intergenic
TTTCTTCTTAATCATTGAAC+CGG 0.438377 8_2:-72403468 Msa1267260:five_prime_UTR
TGATAGTAATTGTAAAGAAA+AGG 0.442398 8_2:-72402780 Msa1267260:CDS
TCATGATCATGATTCGAATC+AGG 0.447002 8_2:+72403083 None:intergenic
TGGATACCTTTATTGTCATC+AGG 0.448523 8_2:-72401736 Msa1267260:intron
AAACAACAACAAGTCTTTCA+GGG 0.453600 8_2:-72403002 Msa1267260:CDS
AATCAGGAGGTAATTCAGAT+TGG 0.455691 8_2:+72403099 None:intergenic
ATTTACGTTTCCAATATGTC+TGG 0.458225 8_2:-72403179 Msa1267260:CDS
CCAGAACTTATCTGTATTGA+GGG 0.458583 8_2:-72402147 Msa1267260:CDS
TATCTCGTATTACTAAGGTA+TGG 0.460471 8_2:+72400250 None:intergenic
AAAGTACCTGATGACAATAA+AGG 0.462826 8_2:+72401730 None:intergenic
CCCTCAATACAGATAAGTTC+TGG 0.465397 8_2:+72402147 None:intergenic
CATCCTCTGCTAGGTGAAGA+AGG 0.470985 8_2:+72400049 None:intergenic
TTAATTGTTGTTAGTCTTGG+AGG 0.477720 8_2:-72399980 Msa1267260:exon
AGGTCACTGTGGATGACAAA+TGG 0.479331 8_2:-72400113 Msa1267260:CDS
AACCTTTGTGGCAGAACTTG+TGG 0.482472 8_2:+72402530 None:intergenic
GAGCGAGCAGTTCAGGTTCA+CGG 0.484567 8_2:-72403401 Msa1267260:five_prime_UTR
TTTCAAAACCACCGAGTCGC+CGG 0.485356 8_2:-72403438 Msa1267260:five_prime_UTR
ATCGTCAGAGAGAAGAATAA+TGG 0.486088 8_2:-72403282 Msa1267260:exon
TTACAATTACTATCAAGAAT+GGG 0.489599 8_2:+72402788 None:intergenic
CTTCTTCACCTAGCAGAGGA+TGG 0.493676 8_2:-72400048 Msa1267260:CDS
GACATATTGGAAACGTAAAT+GGG 0.495516 8_2:+72403182 None:intergenic
AGTCTTGGAGGGACACCTAC+TGG 0.499999 8_2:-72399968 Msa1267260:three_prime_UTR
TAAAAGTATTAACCAGGTAG+AGG 0.500922 8_2:-72403369 Msa1267260:five_prime_UTR
CCTCATATCTCGTATTACTA+AGG 0.501935 8_2:+72400245 None:intergenic
CAAGAGCTGTTAGTTCTTGG+TGG 0.503983 8_2:-72402170 Msa1267260:CDS
TGCCGATGATGTACAGAATT+GGG 0.506290 8_2:-72400214 Msa1267260:CDS
AATGGGTTTATTTGTTCGAC+GGG 0.510441 8_2:+72402805 None:intergenic
GCCAGAACTTATCTGTATTG+AGG 0.512945 8_2:-72402148 Msa1267260:CDS
ACCAAGAACTAACAGCTCTT+GGG 0.513479 8_2:+72402172 None:intergenic
TGATGTAGTCTACATGCTCT+AGG 0.515069 8_2:+72399705 None:intergenic
AAAGAGGAACCCTAACAATT+GGG 0.516740 8_2:+72403156 None:intergenic
CCCCTCGGAATTGAGATTGA+AGG 0.518085 8_2:+72403209 None:intergenic
AAGCCAATCGAGTATGGGTC+TGG 0.519776 8_2:+72401929 None:intergenic
TTCCCTTCTTCACCTAGCAG+AGG 0.521159 8_2:-72400052 Msa1267260:CDS
TATGTCTGGCCCAATTGTTA+GGG 0.523102 8_2:-72403165 Msa1267260:CDS
CCTTAGTAATACGAGATATG+AGG 0.530354 8_2:-72400245 Msa1267260:CDS
TAATTTGAAAAGCATTTCGT+GGG 0.531230 8_2:-72399849 Msa1267260:three_prime_UTR
TCAGGAGCACATACCTGTGC+AGG 0.532269 8_2:-72402406 Msa1267260:CDS
AAATAATAATACAAATAAAG+AGG 0.532711 8_2:+72399638 None:intergenic
ATAATTTGAAAAGCATTTCG+TGG 0.534982 8_2:-72399850 Msa1267260:three_prime_UTR
TGACCAGACCCATACTCGAT+TGG 0.536263 8_2:-72401932 Msa1267260:CDS
ACACAAGCAGGAGGAAGATA+AGG 0.539279 8_2:-72402735 Msa1267260:CDS
ATCTCGTATTACTAAGGTAT+GGG 0.540723 8_2:+72400251 None:intergenic
AGACTAACAACAATTAATCA+TGG 0.540971 8_2:+72399986 None:intergenic
TAATTGTTGTTAGTCTTGGA+GGG 0.546279 8_2:-72399979 Msa1267260:three_prime_UTR
TTGTAAAGAAAAGGTGGAGG+AGG 0.547523 8_2:-72402771 Msa1267260:CDS
GAATGGGTTTATTTGTTCGA+CGG 0.551185 8_2:+72402804 None:intergenic
GGAGGAGGCACAGAAGAAAT+GGG 0.551959 8_2:-72401895 Msa1267260:CDS
CAAAATATTCAGAGCTACAA+AGG 0.552654 8_2:-72400133 Msa1267260:CDS
GATCAATTGCTCAACGGACC+AGG 0.552708 8_2:-72402120 Msa1267260:CDS
ACGTAAATGGGTCCACCCCT+CGG 0.554400 8_2:+72403194 None:intergenic
AGAATTTAGGAGAACCTTTG+TGG 0.559405 8_2:+72402518 None:intergenic
CAATGATTAAGAAGAAAGAA+AGG 0.562252 8_2:+72403474 None:intergenic
ATGGAGAGCCATCCTCTGCT+AGG 0.564427 8_2:+72400040 None:intergenic
TAGTAATTGTAAAGAAAAGG+TGG 0.567221 8_2:-72402777 Msa1267260:CDS
CTGGTCAAATCAATAGCAGA+TGG 0.567575 8_2:+72401948 None:intergenic
TGTCAGAATCAAACACAAGC+AGG 0.569616 8_2:-72402747 Msa1267260:CDS
TCCTTCAATCTCAATTCCGA+GGG 0.576834 8_2:-72403210 Msa1267260:CDS
TCAATCTCAATTCCGAGGGG+TGG 0.580163 8_2:-72403206 Msa1267260:CDS
GTAGTCTACATGCTCTAGGA+AGG 0.581362 8_2:+72399709 None:intergenic
CAAAATCAATCAAAACTCAA+AGG 0.581709 8_2:-72402569 Msa1267260:CDS
TCAATTAGAAAATAACCAGA+AGG 0.582127 8_2:+72402071 None:intergenic
TCTGCTGCTGCAGCATTAGG+AGG 0.582300 8_2:+72402954 None:intergenic
GTTTCAACTGTACCTCTACC+TGG 0.584727 8_2:+72403357 None:intergenic
ATGGGAATATATTATAAATG+GGG 0.585026 8_2:-72401877 Msa1267260:CDS
AGCCCAATTCTGTACATCAT+CGG 0.585350 8_2:+72400212 None:intergenic
ATCCTTCAATCTCAATTCCG+AGG 0.585910 8_2:-72403211 Msa1267260:CDS
TATAGTGTGACTATAAGCGC+TGG 0.590005 8_2:+72399818 None:intergenic
AATAACCAGAAGGGTCATGT+TGG 0.592815 8_2:+72402081 None:intergenic
ATAATCATATTCTATGAAGT+CGG 0.597290 8_2:+72400011 None:intergenic
ATCCTCTGCTAGGTGAAGAA+GGG 0.601005 8_2:+72400050 None:intergenic
ACAACTTCTGAATCCTGCAC+AGG 0.605667 8_2:+72402393 None:intergenic
GCTTCAAAACTCCAAGGAGG+AGG 0.606372 8_2:-72401910 Msa1267260:CDS
GTCCACAAGTTCTGCCACAA+AGG 0.606734 8_2:-72402532 Msa1267260:intron
TCGAAATAAAACATGACACA+TGG 0.615236 8_2:-72403329 Msa1267260:five_prime_UTR
CGATTGGCTTCAAAACTCCA+AGG 0.623497 8_2:-72401916 Msa1267260:CDS
TGAGGACCAGTTAATGGACA+TGG 0.631627 8_2:-72403030 Msa1267260:CDS
TAATTGTAAAGAAAAGGTGG+AGG 0.637738 8_2:-72402774 Msa1267260:CDS
TCTATGAAGTCGGTATACGA+TGG 0.646588 8_2:+72400021 None:intergenic
TGTTTCACAGGTCAACACAA+TGG 0.647779 8_2:-72402433 Msa1267260:intron
TGATCATGATTCGAATCAGG+AGG 0.661526 8_2:+72403086 None:intergenic
ATCTCAAAAGATGCAAAACG+AGG 0.663023 8_2:+72401801 None:intergenic
AAAACAAAAGGCAATTGTCG+GGG 0.664942 8_2:-72401844 Msa1267260:CDS
CAGAATCAAACACAAGCAGG+AGG 0.676879 8_2:-72402744 Msa1267260:CDS
CAATTAGAAAATAACCAGAA+GGG 0.677062 8_2:+72402072 None:intergenic
GGACAAGATCAATTGCTCAA+CGG 0.684391 8_2:-72402126 Msa1267260:CDS
CAGAGCTACAAAGGTCACTG+TGG 0.721614 8_2:-72400124 Msa1267260:CDS
CCTTCAATCTCAATTCCGAG+GGG 0.754073 8_2:-72403209 Msa1267260:CDS
TTGGCTTCAAAACTCCAAGG+AGG 0.756414 8_2:-72401913 Msa1267260:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATAATAATGAAAAAAGA+GGG + chr8_2:72400321-72400340 None:intergenic 10.0%
!! AATAATAATAATGAAAAAAG+AGG + chr8_2:72400322-72400341 None:intergenic 10.0%
!!! AATTATTATTTTGATTATGT+AGG + chr8_2:72400944-72400963 None:intergenic 10.0%
!! AAAGCAAAAAATTAAAAAAA+TGG + chr8_2:72401569-72401588 None:intergenic 10.0%
!!! TTAATTTTTTGCTTTAAATT+TGG - chr8_2:72401574-72401593 Msa1267260:intron 10.0%
!!! TCTTTATTTTTCTTTAATTT+TGG - chr8_2:72402049-72402068 Msa1267260:intron 10.0%
!!! CTTTATTTTTCTTTAATTTT+GGG - chr8_2:72402050-72402069 Msa1267260:intron 10.0%
!!! TTTATTTTTCTTTAATTTTG+GGG - chr8_2:72402051-72402070 Msa1267260:intron 10.0%
!! TAAGAAAACAATTATAAATT+TGG + chr8_2:72402908-72402927 None:intergenic 10.0%
!! AAATAATAATACAAATAAAG+AGG + chr8_2:72403597-72403616 None:intergenic 10.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr8_2:72402223-72402242 None:intergenic 100.0%
!! AAAAAAAAACAGAATTTAGA+AGG + chr8_2:72399737-72399756 None:intergenic 15.0%
!!! GATAAAATATTTTCCTTTAT+CGG - chr8_2:72399925-72399944 Msa1267260:three_prime_UTR 15.0%
!!! TTCATTTTCAAAATGAATTT+TGG - chr8_2:72400967-72400986 Msa1267260:intron 15.0%
!!! TTTTCTTTTTCTTTTTCTTT+TGG - chr8_2:72401032-72401051 Msa1267260:intron 15.0%
!!! TTTCTTTTTCTTTTTCTTTT+GGG - chr8_2:72401033-72401052 Msa1267260:intron 15.0%
!! AAATGGGAATATATTATAAA+TGG - chr8_2:72401353-72401372 Msa1267260:intron 15.0%
!! AATGGGAATATATTATAAAT+GGG - chr8_2:72401354-72401373 Msa1267260:intron 15.0%
!!! TTATTTTTCTTTAATTTTGG+GGG - chr8_2:72402052-72402071 Msa1267260:intron 15.0%
!! AGTATTATAAAAATATGGAA+AGG + chr8_2:72402127-72402146 None:intergenic 15.0%
!! AAATTGTATTATTGAATGAT+AGG + chr8_2:72402720-72402739 None:intergenic 15.0%
!! ATGAAAAATAAACAAATATG+TGG + chr8_2:72402751-72402770 None:intergenic 15.0%
!!! TCTCCTTTTAATTTATATAT+TGG + chr8_2:72402809-72402828 None:intergenic 15.0%
!!! ATAATTGTTTTCTTAGAAAT+TGG - chr8_2:72402913-72402932 Msa1267260:intron 15.0%
!!! TAGTTTTGTTCTTATTTTTT+TGG - chr8_2:72403478-72403497 Msa1267260:five_prime_UTR 15.0%
!!! TCTTATTTTTTTGGTAAAAT+TGG - chr8_2:72403487-72403506 Msa1267260:five_prime_UTR 15.0%
!!! AAAATAAAGAGCTTTTTTAT+TGG + chr8_2:72403558-72403577 None:intergenic 15.0%
!!! AAAGCTCTTTATTTTTTTTT+AGG - chr8_2:72403563-72403582 Msa1267260:five_prime_UTR 15.0%
!!! AAGCTCTTTATTTTTTTTTA+GGG - chr8_2:72403564-72403583 Msa1267260:five_prime_UTR 15.0%
!!! TGGTTAATACTTTTAAAACT+CGG + chr8_2:72399858-72399877 None:intergenic 20.0%
!! ATCATTCATTAATTGATTAC+TGG - chr8_2:72400357-72400376 Msa1267260:intron 20.0%
!! TTACAATTACTATCAAGAAT+GGG + chr8_2:72400447-72400466 None:intergenic 20.0%
!! TTTACAATTACTATCAAGAA+TGG + chr8_2:72400448-72400467 None:intergenic 20.0%
!! TGATAGTAATTGTAAAGAAA+AGG - chr8_2:72400452-72400471 Msa1267260:intron 20.0%
!!! TTTGATTGATTTTGATTTGT+TGG + chr8_2:72400657-72400676 None:intergenic 20.0%
!!! ATTTACCATAATTTTCGAAA+AGG - chr8_2:72400875-72400894 Msa1267260:intron 20.0%
!! ATGGGAATATATTATAAATG+GGG - chr8_2:72401355-72401374 Msa1267260:intron 20.0%
!!! AAGATACATTTTTGTGATTT+AGG - chr8_2:72401458-72401477 Msa1267260:intron 20.0%
!!! ATTTTTGTGATTTAGGTTTT+CGG - chr8_2:72401465-72401484 Msa1267260:intron 20.0%
!!! TATTAAACCATGTTGTTTAA+AGG + chr8_2:72401898-72401917 None:intergenic 20.0%
!! AAAAAAAAATTGGGAAACTT+TGG - chr8_2:72402077-72402096 Msa1267260:CDS 20.0%
!!! TTGGGAGTATTATAAAAATA+TGG + chr8_2:72402132-72402151 None:intergenic 20.0%
!! TGGCCAATATATAAATTAAA+AGG - chr8_2:72402803-72402822 Msa1267260:CDS 20.0%
!! ATTCATCACAAAAATAACAA+GGG + chr8_2:72403156-72403175 None:intergenic 20.0%
!! ATAATCATATTCTATGAAGT+CGG + chr8_2:72403224-72403243 None:intergenic 20.0%
!!! AGCTCTTTATTTTTTTTTAG+GGG - chr8_2:72403565-72403584 Msa1267260:five_prime_UTR 20.0%
! CTCTCTATGAAAAAAAGAAT+AGG + chr8_2:72399622-72399641 None:intergenic 25.0%
! AAAAACAGAATTTAGAAGGA+AGG + chr8_2:72399733-72399752 None:intergenic 25.0%
! CAATGATTAAGAAGAAAGAA+AGG + chr8_2:72399761-72399780 None:intergenic 25.0%
! TTTCTTCTTAATCATTGAAC+CGG - chr8_2:72399764-72399783 Msa1267260:three_prime_UTR 25.0%
!!! GAGTTTTAAAAGTATTAACC+AGG - chr8_2:72399857-72399876 Msa1267260:three_prime_UTR 25.0%
!!! GTCATGTTTTATTTCGATAA+CGG + chr8_2:72399900-72399919 None:intergenic 25.0%
!! TGATCTTAAAGTTTTTACTG+AGG - chr8_2:72400184-72400203 Msa1267260:CDS 25.0%
! CATTAATTGATTACTGGATT+TGG - chr8_2:72400363-72400382 Msa1267260:intron 25.0%
! TAGTAATTGTAAAGAAAAGG+TGG - chr8_2:72400455-72400474 Msa1267260:intron 25.0%
! CAAAATCAATCAAAACTCAA+AGG - chr8_2:72400663-72400682 Msa1267260:intron 25.0%
! GTAATGCATAGTAAGAATTT+AGG + chr8_2:72400730-72400749 None:intergenic 25.0%
! AATATGAAGATGGAAAAAAG+AGG + chr8_2:72400754-72400773 None:intergenic 25.0%
! AAAGATAAGGAATATGAAGA+TGG + chr8_2:72400764-72400783 None:intergenic 25.0%
! AAAGAAGAAGAAGAAAGATA+AGG + chr8_2:72400777-72400796 None:intergenic 25.0%
!!! TTATTTTGATTATGTAGGCA+TGG + chr8_2:72400939-72400958 None:intergenic 25.0%
! TATCATCAAAGTTAACATGT+AGG - chr8_2:72400998-72401017 Msa1267260:intron 25.0%
! AAGAAAAAGAAAAAGAACAG+AGG + chr8_2:72401025-72401044 None:intergenic 25.0%
! CAATTAGAAAATAACCAGAA+GGG + chr8_2:72401163-72401182 None:intergenic 25.0%
! TCAATTAGAAAATAACCAGA+AGG + chr8_2:72401164-72401183 None:intergenic 25.0%
!!! TTCTGGTTATTTTCTAATTG+AGG - chr8_2:72401163-72401182 Msa1267260:intron 25.0%
!!! ATGTATTTTACACTGATTTG+AGG - chr8_2:72401258-72401277 Msa1267260:intron 25.0%
!!! TGTATTTTACACTGATTTGA+GGG - chr8_2:72401259-72401278 Msa1267260:intron 25.0%
!! TACTTTCTTTTATATGTCAC+AGG - chr8_2:72401519-72401538 Msa1267260:intron 25.0%
! GCATTGTACTATTGTAAAAT+AGG + chr8_2:72401656-72401675 None:intergenic 25.0%
! AAGTAAAAAATGCGAAACAT+TGG + chr8_2:72401796-72401815 None:intergenic 25.0%
!!! ATGTTCTTTAAGACATTGTT+GGG - chr8_2:72401964-72401983 Msa1267260:CDS 25.0%
! AAGAAAAATAAAGACATGCA+AGG + chr8_2:72402043-72402062 None:intergenic 25.0%
! TTTGGGGGTTAAAAAAAAAT+TGG - chr8_2:72402067-72402086 Msa1267260:intron 25.0%
! TTGGGGGTTAAAAAAAAATT+GGG - chr8_2:72402068-72402087 Msa1267260:intron 25.0%
!!! ACTAGTATTCTCTTTGTTTT+GGG + chr8_2:72402150-72402169 None:intergenic 25.0%
!!! TCACTTAGAATATGTTTTGA+GGG + chr8_2:72402246-72402265 None:intergenic 25.0%
!!! AATCTTTTTTTCTGAGATTG+AGG - chr8_2:72402340-72402359 Msa1267260:CDS 25.0%
! TATCTAACTGCAAAATTCTT+AGG + chr8_2:72402609-72402628 None:intergenic 25.0%
! TTGTATTATTGAATGATAGG+TGG + chr8_2:72402717-72402736 None:intergenic 25.0%
!!! TTTTCATTGCTTCTGAAAAT+TGG - chr8_2:72402764-72402783 Msa1267260:CDS 25.0%
! ATTTATATATTGGCCAATGA+TGG + chr8_2:72402799-72402818 None:intergenic 25.0%
! CATTCATCACAAAAATAACA+AGG + chr8_2:72403157-72403176 None:intergenic 25.0%
! AGACTAACAACAATTAATCA+TGG + chr8_2:72403249-72403268 None:intergenic 25.0%
!! TGATTAATTGTTGTTAGTCT+TGG - chr8_2:72403249-72403268 Msa1267260:CDS 25.0%
!!! ATAATTTGAAAAGCATTTCG+TGG - chr8_2:72403382-72403401 Msa1267260:five_prime_UTR 25.0%
!!! TAATTTGAAAAGCATTTCGT+GGG - chr8_2:72403383-72403402 Msa1267260:five_prime_UTR 25.0%
AAGGAAGCAAAAATTTGAAG+TGG + chr8_2:72399714-72399733 None:intergenic 30.0%
!! TAAAAGTATTAACCAGGTAG+AGG - chr8_2:72399863-72399882 Msa1267260:three_prime_UTR 30.0%
TCGAAATAAAACATGACACA+TGG - chr8_2:72399903-72399922 Msa1267260:three_prime_UTR 30.0%
!! AATAATGGATGACGATGAAT+TGG - chr8_2:72399965-72399984 Msa1267260:three_prime_UTR 30.0%
TTGGAATTGGAATGTTCAAT+TGG - chr8_2:72399990-72400009 Msa1267260:exon 30.0%
GACATATTGGAAACGTAAAT+GGG + chr8_2:72400053-72400072 None:intergenic 30.0%
AGACATATTGGAAACGTAAA+TGG + chr8_2:72400054-72400073 None:intergenic 30.0%
ATTTACGTTTCCAATATGTC+TGG - chr8_2:72400053-72400072 Msa1267260:CDS 30.0%
AAACAACAACAAGTCTTTCA+GGG - chr8_2:72400230-72400249 Msa1267260:CDS 30.0%
TAATTGTAAAGAAAAGGTGG+AGG - chr8_2:72400458-72400477 Msa1267260:intron 30.0%
CTTCTTCTTTAATGTTTCAC+AGG - chr8_2:72400787-72400806 Msa1267260:intron 30.0%
! TGACACCTTTTCGAAAATTA+TGG + chr8_2:72400883-72400902 None:intergenic 30.0%
!!! GAATACCTTTTTTTTGGCAT+TGG + chr8_2:72400912-72400931 None:intergenic 30.0%
!!! GGCATTGAATACCTTTTTTT+TGG + chr8_2:72400918-72400937 None:intergenic 30.0%
CAAAAACAAAAGGCAATTGT+CGG - chr8_2:72401386-72401405 Msa1267260:intron 30.0%
AAAAACAAAAGGCAATTGTC+GGG - chr8_2:72401387-72401406 Msa1267260:intron 30.0%
! AAAGTACCTGATGACAATAA+AGG + chr8_2:72401505-72401524 None:intergenic 30.0%
TGCTTATGAAATTTGTCTCA+TGG - chr8_2:72401600-72401619 Msa1267260:intron 30.0%
TTTGTCTCATGGTAATTGAA+AGG - chr8_2:72401611-72401630 Msa1267260:intron 30.0%
TTGTCTCATGGTAATTGAAA+GGG - chr8_2:72401612-72401631 Msa1267260:intron 30.0%
TGTTTGATGCAATGATAGAA+TGG - chr8_2:72401706-72401725 Msa1267260:intron 30.0%
!! TTGTTTGGTTCCATCAATTT+TGG - chr8_2:72401765-72401784 Msa1267260:CDS 30.0%
ATTGGTTACACCAAAATTGA+TGG + chr8_2:72401778-72401797 None:intergenic 30.0%
!! CATGTTCTTTAAGACATTGT+TGG - chr8_2:72401963-72401982 Msa1267260:CDS 30.0%
AAATAAAGACATGCAAGGTA+GGG + chr8_2:72402038-72402057 None:intergenic 30.0%
AAAATAAAGACATGCAAGGT+AGG + chr8_2:72402039-72402058 None:intergenic 30.0%
AAAAAATTGGGAAACTTTGG+AGG - chr8_2:72402080-72402099 Msa1267260:CDS 30.0%
AAAAATTGGGAAACTTTGGA+GGG - chr8_2:72402081-72402100 Msa1267260:CDS 30.0%
!! GACTAGTATTCTCTTTGTTT+TGG + chr8_2:72402151-72402170 None:intergenic 30.0%
!!! GTTTGGAAGTGTTTTAAGAT+TGG + chr8_2:72402193-72402212 None:intergenic 30.0%
!!! ACTTAGAATATGTTTTGAGG+GGG + chr8_2:72402244-72402263 None:intergenic 30.0%
!! CACTTAGAATATGTTTTGAG+GGG + chr8_2:72402245-72402264 None:intergenic 30.0%
! CTCACTTAGAATATGTTTTG+AGG + chr8_2:72402247-72402266 None:intergenic 30.0%
!!! CACTATGGCTACTTTTTTTA+TGG + chr8_2:72402292-72402311 None:intergenic 30.0%
TTAACATAGTCACTTCACTA+TGG + chr8_2:72402307-72402326 None:intergenic 30.0%
! CTTTTCTAATTGAATCATGC+AGG + chr8_2:72402379-72402398 None:intergenic 30.0%
TTCCTTATACTATGGACAAA+CGG + chr8_2:72402562-72402581 None:intergenic 30.0%
TATTGAATGATAGGTGGAAT+TGG + chr8_2:72402711-72402730 None:intergenic 30.0%
TAGAAATTGGATCTTTAACG+TGG - chr8_2:72402926-72402945 Msa1267260:intron 30.0%
ATCTCGTATTACTAAGGTAT+GGG + chr8_2:72402984-72403003 None:intergenic 30.0%
TATCTCGTATTACTAAGGTA+TGG + chr8_2:72402985-72403004 None:intergenic 30.0%
TTCAGTTGAAAAGTGACAAT+TGG + chr8_2:72403052-72403071 None:intergenic 30.0%
! AAGATACGTTTTCAGAAATG+CGG - chr8_2:72403070-72403089 Msa1267260:CDS 30.0%
CAAAATATTCAGAGCTACAA+AGG - chr8_2:72403099-72403118 Msa1267260:CDS 30.0%
!! TTAATTGTTGTTAGTCTTGG+AGG - chr8_2:72403252-72403271 Msa1267260:CDS 30.0%
!! TAATTGTTGTTAGTCTTGGA+GGG - chr8_2:72403253-72403272 Msa1267260:CDS 30.0%
TCTTAATCATTGAACCGGTT+CGG - chr8_2:72399769-72399788 Msa1267260:three_prime_UTR 35.0%
ATCGTCAGAGAGAAGAATAA+TGG - chr8_2:72399950-72399969 Msa1267260:three_prime_UTR 35.0%
CGATGAATTGGAATTGGAAT+TGG - chr8_2:72399977-72399996 Msa1267260:three_prime_UTR 35.0%
AAAGAGGAACCCTAACAATT+GGG + chr8_2:72400079-72400098 None:intergenic 35.0%
AAAAGAGGAACCCTAACAAT+TGG + chr8_2:72400080-72400099 None:intergenic 35.0%
AGAAGTGAATCCTGAAAAAG+AGG + chr8_2:72400095-72400114 None:intergenic 35.0%
AATCAGGAGGTAATTCAGAT+TGG + chr8_2:72400136-72400155 None:intergenic 35.0%
TCATGATCATGATTCGAATC+AGG + chr8_2:72400152-72400171 None:intergenic 35.0%
! TTTTACTGAGGACCAGTTAA+TGG - chr8_2:72400196-72400215 Msa1267260:CDS 35.0%
GAAACAACAACAAGTCTTTC+AGG - chr8_2:72400229-72400248 Msa1267260:CDS 35.0%
! AATGGGTTTATTTGTTCGAC+GGG + chr8_2:72400430-72400449 None:intergenic 35.0%
! GAATGGGTTTATTTGTTCGA+CGG + chr8_2:72400431-72400450 None:intergenic 35.0%
TAAAGCAAGATAGGTGAATC+AGG + chr8_2:72400607-72400626 None:intergenic 35.0%
AATCAGGACTAAAGCAAGAT+AGG + chr8_2:72400616-72400635 None:intergenic 35.0%
AGAATTTAGGAGAACCTTTG+TGG + chr8_2:72400717-72400736 None:intergenic 35.0%
GCTATCCAATGCCAAAAAAA+AGG - chr8_2:72400904-72400923 Msa1267260:intron 35.0%
CCAGAACTTATCTGTATTGA+GGG - chr8_2:72401085-72401104 Msa1267260:intron 35.0%
ATAGTGATCTCGTTACAAGA+GGG + chr8_2:72401203-72401222 None:intergenic 35.0%
AATAGTGATCTCGTTACAAG+AGG + chr8_2:72401204-72401223 None:intergenic 35.0%
AAATACATCCTGCAAGAAAC+TGG + chr8_2:72401246-72401265 None:intergenic 35.0%
!!! TTTTGAAGCCAATCGAGTAT+GGG + chr8_2:72401311-72401330 None:intergenic 35.0%
GGAACTACAGCAAAAACAAA+AGG - chr8_2:72401376-72401395 Msa1267260:intron 35.0%
AAAACAAAAGGCAATTGTCG+GGG - chr8_2:72401388-72401407 Msa1267260:intron 35.0%
ATCTCAAAAGATGCAAAACG+AGG + chr8_2:72401434-72401453 None:intergenic 35.0%
TGGATACCTTTATTGTCATC+AGG - chr8_2:72401496-72401515 Msa1267260:intron 35.0%
TGGTAATTGAAAGGGAAGTT+TGG - chr8_2:72401620-72401639 Msa1267260:intron 35.0%
TGAGCACACAACAAAACATA+TGG + chr8_2:72401869-72401888 None:intergenic 35.0%
AGCACTACCTTTAAACAACA+TGG - chr8_2:72401888-72401907 Msa1267260:CDS 35.0%
AGACATTGTTGGGAAGTTAT+AGG - chr8_2:72401974-72401993 Msa1267260:CDS 35.0%
AATAAAGACATGCAAGGTAG+GGG + chr8_2:72402037-72402056 None:intergenic 35.0%
!!! TGGAAGTGTTTTAAGATTGG+AGG + chr8_2:72402190-72402209 None:intergenic 35.0%
AAAACACTTCCAAACCTTGT+TGG - chr8_2:72402198-72402217 Msa1267260:intron 35.0%
AAACACTTCCAAACCTTGTT+GGG - chr8_2:72402199-72402218 Msa1267260:intron 35.0%
!!! TTAGAATATGTTTTGAGGGG+GGG + chr8_2:72402242-72402261 None:intergenic 35.0%
!!! CTTAGAATATGTTTTGAGGG+GGG + chr8_2:72402243-72402262 None:intergenic 35.0%
ATGGTCTCATTCTTTCACTA+TGG + chr8_2:72402273-72402292 None:intergenic 35.0%
!!! CTTTTTTTCTGAGATTGAGG+TGG - chr8_2:72402343-72402362 Msa1267260:CDS 35.0%
! GATTCAATTAGAAAAGCACG+AGG - chr8_2:72402383-72402402 Msa1267260:CDS 35.0%
TTGGATCCAATATGAACCAA+GGG + chr8_2:72402436-72402455 None:intergenic 35.0%
TTTGGATCCAATATGAACCA+AGG + chr8_2:72402437-72402456 None:intergenic 35.0%
GGTGACACTAAGTAAAATTG+TGG - chr8_2:72402510-72402529 Msa1267260:intron 35.0%
AACCGTTTGTCCATAGTATA+AGG - chr8_2:72402557-72402576 Msa1267260:CDS 35.0%
CGTCTTCATTCCTTATACTA+TGG + chr8_2:72402570-72402589 None:intergenic 35.0%
TAGTATAAGGAATGAAGACG+TGG - chr8_2:72402570-72402589 Msa1267260:CDS 35.0%
AGTATAAGGAATGAAGACGT+GGG - chr8_2:72402571-72402590 Msa1267260:CDS 35.0%
AGTAAGCAATAGCTTCCTAT+AGG - chr8_2:72402634-72402653 Msa1267260:intron 35.0%
TAGCACTAGCAAACTTGAAA+AGG - chr8_2:72402838-72402857 Msa1267260:CDS 35.0%
AGCACTAGCAAACTTGAAAA+GGG - chr8_2:72402839-72402858 Msa1267260:CDS 35.0%
CCTCATATCTCGTATTACTA+AGG + chr8_2:72402990-72403009 None:intergenic 35.0%
CCTTAGTAATACGAGATATG+AGG - chr8_2:72402987-72403006 Msa1267260:CDS 35.0%
CAAAAATAACAAGGGTTGTC+TGG + chr8_2:72403148-72403167 None:intergenic 35.0%
TGAAAAATTCAATCGCCAGT+AGG + chr8_2:72403282-72403301 None:intergenic 35.0%
!!! GTGGTTTTGAAAAACCGAAC+CGG + chr8_2:72399786-72399805 None:intergenic 40.0%
GGATGACGATGAATTGGAAT+TGG - chr8_2:72399971-72399990 Msa1267260:three_prime_UTR 40.0%
ATCCTTCAATCTCAATTCCG+AGG - chr8_2:72400021-72400040 Msa1267260:CDS 40.0%
TCCTTCAATCTCAATTCCGA+GGG - chr8_2:72400022-72400041 Msa1267260:CDS 40.0%
AACAATTGGGCCAGACATAT+TGG + chr8_2:72400066-72400085 None:intergenic 40.0%
ATATGTCTGGCCCAATTGTT+AGG - chr8_2:72400066-72400085 Msa1267260:CDS 40.0%
TATGTCTGGCCCAATTGTTA+GGG - chr8_2:72400067-72400086 Msa1267260:CDS 40.0%
! TGTTAGGGTTCCTCTTTTTC+AGG - chr8_2:72400082-72400101 Msa1267260:CDS 40.0%
TGATCATGATTCGAATCAGG+AGG + chr8_2:72400149-72400168 None:intergenic 40.0%
TCAAAGCCATGTCCATTAAC+TGG + chr8_2:72400211-72400230 None:intergenic 40.0%
TTGTAAAGAAAAGGTGGAGG+AGG - chr8_2:72400461-72400480 Msa1267260:intron 40.0%
TGTCAGAATCAAACACAAGC+AGG - chr8_2:72400485-72400504 Msa1267260:intron 40.0%
GATTGATTGATCCTGGAATC+AGG + chr8_2:72400632-72400651 None:intergenic 40.0%
CTCAAAGGATGATGTCTCTT+AGG - chr8_2:72400678-72400697 Msa1267260:intron 40.0%
TGTTTCACAGGTCAACACAA+TGG - chr8_2:72400799-72400818 Msa1267260:intron 40.0%
ACCAAGAACTAACAGCTCTT+GGG + chr8_2:72401063-72401082 None:intergenic 40.0%
GCCAGAACTTATCTGTATTG+AGG - chr8_2:72401084-72401103 Msa1267260:intron 40.0%
CCCTCAATACAGATAAGTTC+TGG + chr8_2:72401088-72401107 None:intergenic 40.0%
GGACAAGATCAATTGCTCAA+CGG - chr8_2:72401106-72401125 Msa1267260:intron 40.0%
AATAACCAGAAGGGTCATGT+TGG + chr8_2:72401154-72401173 None:intergenic 40.0%
CTGGTCAAATCAATAGCAGA+TGG + chr8_2:72401287-72401306 None:intergenic 40.0%
!!! GTTTTGAAGCCAATCGAGTA+TGG + chr8_2:72401312-72401331 None:intergenic 40.0%
!! TGTGATTTAGGTTTTCGGCT+TGG - chr8_2:72401470-72401489 Msa1267260:intron 40.0%
ACAATGCCTCTCAAGTGAAA+AGG - chr8_2:72401669-72401688 Msa1267260:intron 40.0%
! GTTTTGCCTTTTCACTTGAG+AGG + chr8_2:72401678-72401697 None:intergenic 40.0%
ACAAAACACTCAGAGCTTGA+CGG + chr8_2:72401749-72401768 None:intergenic 40.0%
!!! CAAGCTCTGAGTGTTTTGTT+TGG - chr8_2:72401750-72401769 Msa1267260:CDS 40.0%
TCTTGATCTAGCGACAGTTA+TGG + chr8_2:72401922-72401941 None:intergenic 40.0%
CATTGTTGGGAAGTTATAGG+AGG - chr8_2:72401977-72401996 Msa1267260:CDS 40.0%
TTGGGAAGTTATAGGAGGAA+GGG - chr8_2:72401982-72402001 Msa1267260:intron 40.0%
!!! TAGAATATGTTTTGAGGGGG+GGG + chr8_2:72402241-72402260 None:intergenic 40.0%
AGGGGTAAAAGAGGGAAAAA+GGG - chr8_2:72402488-72402507 Msa1267260:intron 40.0%
CACTAAGTAAAATTGTGGCG+TGG - chr8_2:72402515-72402534 Msa1267260:intron 40.0%
TTGGAATGTTTGCAGATTCG+AGG + chr8_2:72402692-72402711 None:intergenic 40.0%
TTGGTTCCTAACACCATCAT+TGG - chr8_2:72402783-72402802 Msa1267260:CDS 40.0%
! TATTGGCCAATGATGGTGTT+AGG + chr8_2:72402792-72402811 None:intergenic 40.0%
TCATTGAGACCTAACTACGA+TGG - chr8_2:72402870-72402889 Msa1267260:intron 40.0%
CATCAAACACCATCGTAGTT+AGG + chr8_2:72402882-72402901 None:intergenic 40.0%
AACTACGATGGTGTTTGATG+TGG - chr8_2:72402882-72402901 Msa1267260:intron 40.0%
ATGTTCTCTGTCTACTTGCA+GGG - chr8_2:72402950-72402969 Msa1267260:intron 40.0%
ATGCCGATGATGTACAGAAT+TGG - chr8_2:72403017-72403036 Msa1267260:CDS 40.0%
TGCCGATGATGTACAGAATT+GGG - chr8_2:72403018-72403037 Msa1267260:CDS 40.0%
AGCCCAATTCTGTACATCAT+CGG + chr8_2:72403023-72403042 None:intergenic 40.0%
TCTATGAAGTCGGTATACGA+TGG + chr8_2:72403214-72403233 None:intergenic 40.0%
! CTTTGCTGCAACACGTATTT+TGG - chr8_2:72403355-72403374 Msa1267260:five_prime_UTR 40.0%
TATAGTGTGACTATAAGCGC+TGG + chr8_2:72403417-72403436 None:intergenic 40.0%
TGATGTAGTCTACATGCTCT+AGG + chr8_2:72403530-72403549 None:intergenic 40.0%
CGCTCAAAACCGGAAAAAAC+CGG + chr8_2:72399816-72399835 None:intergenic 45.0%
GTTTCAACTGTACCTCTACC+TGG + chr8_2:72399878-72399897 None:intergenic 45.0%
TCTCTGACGATTGCCGATAA+AGG + chr8_2:72399941-72399960 None:intergenic 45.0%
CCTTCAATCTCAATTCCGAG+GGG - chr8_2:72400023-72400042 Msa1267260:CDS 45.0%
! TGAGGACCAGTTAATGGACA+TGG - chr8_2:72400202-72400221 Msa1267260:CDS 45.0%
! TTACTGGATTTGGTTGCAGC+AGG - chr8_2:72400373-72400392 Msa1267260:intron 45.0%
! TACTGGATTTGGTTGCAGCA+GGG - chr8_2:72400374-72400393 Msa1267260:intron 45.0%
GTCAGAACAACAAGCTCTTC+AGG - chr8_2:72400397-72400416 Msa1267260:intron 45.0%
CAGAATCAAACACAAGCAGG+AGG - chr8_2:72400488-72400507 Msa1267260:intron 45.0%
ACACAAGCAGGAGGAAGATA+AGG - chr8_2:72400497-72400516 Msa1267260:intron 45.0%
CTTGCTTTAGTCCTGATTCC+AGG - chr8_2:72400618-72400637 Msa1267260:intron 45.0%
GTTGGCAGATTGATTGATCC+TGG + chr8_2:72400639-72400658 None:intergenic 45.0%
AACCTTTGTGGCAGAACTTG+TGG + chr8_2:72400705-72400724 None:intergenic 45.0%
ACAACTTCTGAATCCTGCAC+AGG + chr8_2:72400842-72400861 None:intergenic 45.0%
! ACCCAAGAGCTGTTAGTTCT+TGG - chr8_2:72401059-72401078 Msa1267260:intron 45.0%
CACCAAGAACTAACAGCTCT+TGG + chr8_2:72401064-72401083 None:intergenic 45.0%
! CAAGAGCTGTTAGTTCTTGG+TGG - chr8_2:72401062-72401081 Msa1267260:intron 45.0%
GACCAGGTTATGCAAAAAGC+TGG - chr8_2:72401128-72401147 Msa1267260:intron 45.0%
!! CGATTGGCTTCAAAACTCCA+AGG - chr8_2:72401316-72401335 Msa1267260:intron 45.0%
TTGGCTTCAAAACTCCAAGG+AGG - chr8_2:72401319-72401338 Msa1267260:intron 45.0%
GTTGGGAAGTTATAGGAGGA+AGG - chr8_2:72401981-72402000 Msa1267260:intron 45.0%
GAAGTTATAGGAGGAAGGGA+GGG - chr8_2:72401986-72402005 Msa1267260:intron 45.0%
AAGTTATAGGAGGAAGGGAG+GGG - chr8_2:72401987-72402006 Msa1267260:intron 45.0%
!!! AGAATATGTTTTGAGGGGGG+GGG + chr8_2:72402240-72402259 None:intergenic 45.0%
TCTGTTAGAGCTGATCAGCT+TGG - chr8_2:72402409-72402428 Msa1267260:CDS 45.0%
CTGTTAGAGCTGATCAGCTT+GGG - chr8_2:72402410-72402429 Msa1267260:CDS 45.0%
ATCCAAATAAGCCCATAGCG+TGG - chr8_2:72402450-72402469 Msa1267260:intron 45.0%
GAGTAAACTCTCCACGCTAT+GGG + chr8_2:72402464-72402483 None:intergenic 45.0%
AGAGTAAACTCTCCACGCTA+TGG + chr8_2:72402465-72402484 None:intergenic 45.0%
TAGCGTGGAGAGTTTACTCT+AGG - chr8_2:72402465-72402484 Msa1267260:intron 45.0%
! GTGGAGAGTTTACTCTAGGA+GGG - chr8_2:72402469-72402488 Msa1267260:intron 45.0%
! TGGAGAGTTTACTCTAGGAG+GGG - chr8_2:72402470-72402489 Msa1267260:intron 45.0%
! TACTCTAGGAGGGGTAAAAG+AGG - chr8_2:72402479-72402498 Msa1267260:intron 45.0%
! ACTCTAGGAGGGGTAAAAGA+GGG - chr8_2:72402480-72402499 Msa1267260:intron 45.0%
GAGGGGTAAAAGAGGGAAAA+AGG - chr8_2:72402487-72402506 Msa1267260:intron 45.0%
GGGGTAAAAGAGGGAAAAAG+GGG - chr8_2:72402489-72402508 Msa1267260:intron 45.0%
CATGTTCTCTGTCTACTTGC+AGG - chr8_2:72402949-72402968 Msa1267260:intron 45.0%
AGGTCACTGTGGATGACAAA+TGG - chr8_2:72403119-72403138 Msa1267260:CDS 45.0%
ATCCTCTGCTAGGTGAAGAA+GGG + chr8_2:72403185-72403204 None:intergenic 45.0%
!! GTAGTCTACATGCTCTAGGA+AGG + chr8_2:72403526-72403545 None:intergenic 45.0%
TTTCAAAACCACCGAGTCGC+CGG - chr8_2:72399794-72399813 Msa1267260:three_prime_UTR 50.0%
CTGAACTGCTCGCTCAAAAC+CGG + chr8_2:72399826-72399845 None:intergenic 50.0%
CCCCTCGGAATTGAGATTGA+AGG + chr8_2:72400026-72400045 None:intergenic 50.0%
TCAATCTCAATTCCGAGGGG+TGG - chr8_2:72400026-72400045 Msa1267260:CDS 50.0%
AACTCTGCTGCTGCAGCATT+AGG + chr8_2:72400284-72400303 None:intergenic 50.0%
! ACTGGATTTGGTTGCAGCAG+GGG - chr8_2:72400375-72400394 Msa1267260:intron 50.0%
GTCCACAAGTTCTGCCACAA+AGG - chr8_2:72400700-72400719 Msa1267260:intron 50.0%
GGTCAACACAATGGCTCTTC+AGG - chr8_2:72400808-72400827 Msa1267260:intron 50.0%
GATCAATTGCTCAACGGACC+AGG - chr8_2:72401112-72401131 Msa1267260:intron 50.0%
! GGCCAGCTTTTTGCATAACC+TGG + chr8_2:72401133-72401152 None:intergenic 50.0%
CTCGTTACAAGAGGGACTAG+AGG + chr8_2:72401195-72401214 None:intergenic 50.0%
TCTGACGACCAGTTTCTTGC+AGG - chr8_2:72401235-72401254 Msa1267260:intron 50.0%
TGACCAGACCCATACTCGAT+TGG - chr8_2:72401300-72401319 Msa1267260:intron 50.0%
AAGCCAATCGAGTATGGGTC+TGG + chr8_2:72401306-72401325 None:intergenic 50.0%
GCTTCAAAACTCCAAGGAGG+AGG - chr8_2:72401322-72401341 Msa1267260:intron 50.0%
TTTCTTCTGTGCCTCCTCCT+TGG + chr8_2:72401336-72401355 None:intergenic 50.0%
! AGGAGGAGGCACAGAAGAAA+TGG - chr8_2:72401336-72401355 Msa1267260:intron 50.0%
! GGAGGAGGCACAGAAGAAAT+GGG - chr8_2:72401337-72401356 Msa1267260:intron 50.0%
!!! TTAGGTTTTCGGCTTGGTGC+TGG - chr8_2:72401476-72401495 Msa1267260:intron 50.0%
ACTCAGAGCTTGACGGAACA+AGG + chr8_2:72401742-72401761 None:intergenic 50.0%
GGAAGTTATAGGAGGAAGGG+AGG - chr8_2:72401985-72402004 Msa1267260:intron 50.0%
!!! AATATGTTTTGAGGGGGGGG+GGG + chr8_2:72402238-72402257 None:intergenic 50.0%
!!! GAATATGTTTTGAGGGGGGG+GGG + chr8_2:72402239-72402258 None:intergenic 50.0%
CTTGGGCCCTTGGTTCATAT+TGG - chr8_2:72402427-72402446 Msa1267260:intron 50.0%
CTCCACGCTATGGGCTTATT+TGG + chr8_2:72402455-72402474 None:intergenic 50.0%
CGTGGAGAGTTTACTCTAGG+AGG - chr8_2:72402468-72402487 Msa1267260:intron 50.0%
TTCCTATAGGAGCTACGCTC+TGG - chr8_2:72402647-72402666 Msa1267260:intron 50.0%
TCCTATAGGAGCTACGCTCT+GGG - chr8_2:72402648-72402667 Msa1267260:intron 50.0%
CAGAGCTACAAAGGTCACTG+TGG - chr8_2:72403108-72403127 Msa1267260:CDS 50.0%
TTCCCTTCTTCACCTAGCAG+AGG - chr8_2:72403180-72403199 Msa1267260:CDS 50.0%
CATCCTCTGCTAGGTGAAGA+AGG + chr8_2:72403186-72403205 None:intergenic 50.0%
CTTCTTCACCTAGCAGAGGA+TGG - chr8_2:72403184-72403203 Msa1267260:CDS 50.0%
!!! ACCGAGTCGCCGGTTTTTTC+CGG - chr8_2:72399804-72399823 Msa1267260:three_prime_UTR 55.0%
ACCGGAAAAAACCGGCGACT+CGG + chr8_2:72399808-72399827 None:intergenic 55.0%
!!! CGGTTTTGAGCGAGCAGTTC+AGG - chr8_2:72399824-72399843 Msa1267260:three_prime_UTR 55.0%
! GAGCGAGCAGTTCAGGTTCA+CGG - chr8_2:72399831-72399850 Msa1267260:three_prime_UTR 55.0%
ACGTAAATGGGTCCACCCCT+CGG + chr8_2:72400041-72400060 None:intergenic 55.0%
TCTGCTGCTGCAGCATTAGG+AGG + chr8_2:72400281-72400300 None:intergenic 55.0%
! TCAGGAGCACATACCTGTGC+AGG - chr8_2:72400826-72400845 Msa1267260:intron 55.0%
ATAGGAGGAAGGGAGGGGAA+AGG - chr8_2:72401992-72402011 Msa1267260:intron 55.0%
AGGAAGGGAGGGGAAAGGAA+AGG - chr8_2:72401997-72402016 Msa1267260:intron 55.0%
AGGGGAAAGGAAAGGAGAGG+AGG - chr8_2:72402005-72402024 Msa1267260:intron 55.0%
GGGGAAAGGAAAGGAGAGGA+GGG - chr8_2:72402006-72402025 Msa1267260:intron 55.0%
GGGAAAGGAAAGGAGAGGAG+GGG - chr8_2:72402007-72402026 Msa1267260:intron 55.0%
!!! ATATGTTTTGAGGGGGGGGG+GGG + chr8_2:72402237-72402256 None:intergenic 55.0%
! AGCTACGCTCTGGGCAGTTT+AGG - chr8_2:72402657-72402676 Msa1267260:intron 55.0%
ATGGAGAGCCATCCTCTGCT+AGG + chr8_2:72403195-72403214 None:intergenic 55.0%
AGTCTTGGAGGGACACCTAC+TGG - chr8_2:72403264-72403283 Msa1267260:CDS 55.0%
! GGAAAAAACCGGCGACTCGG+TGG + chr8_2:72399805-72399824 None:intergenic 60.0%
GCTGGCCAACATGACCCTTC+TGG - chr8_2:72401146-72401165 Msa1267260:intron 60.0%
GGGAGGGGAAAGGAAAGGAG+AGG - chr8_2:72402002-72402021 Msa1267260:intron 60.0%
!!! TATGTTTTGAGGGGGGGGGG+GGG + chr8_2:72402236-72402255 None:intergenic 60.0%
AGCTGATCAGCTTGGGCCCT+TGG - chr8_2:72402417-72402436 Msa1267260:CDS 60.0%
GCCCAGAGCGTAGCTCCTAT+AGG + chr8_2:72402652-72402671 None:intergenic 60.0%
GGGGGGGACCCAACAAGGTT+TGG + chr8_2:72402210-72402229 None:intergenic 65.0%
!!! ATGTTTTGAGGGGGGGGGGG+GGG + chr8_2:72402235-72402254 None:intergenic 65.0%
!!! TGTTTTGAGGGGGGGGGGGG+GGG + chr8_2:72402234-72402253 None:intergenic 70.0%
!! TTTTGAGGGGGGGGGGGGGG+GGG + chr8_2:72402232-72402251 None:intergenic 75.0%
!!! GTTTTGAGGGGGGGGGGGGG+GGG + chr8_2:72402233-72402252 None:intergenic 75.0%
! GGGGGGGGGGGGACCCAACA+AGG + chr8_2:72402215-72402234 None:intergenic 80.0%
! TTTGAGGGGGGGGGGGGGGG+GGG + chr8_2:72402231-72402250 None:intergenic 80.0%
! TTGAGGGGGGGGGGGGGGGG+GGG + chr8_2:72402230-72402249 None:intergenic 85.0%
! TGAGGGGGGGGGGGGGGGGG+GGG + chr8_2:72402229-72402248 None:intergenic 90.0%
! AGGGGGGGGGGGGGGGGGGG+GGG + chr8_2:72402227-72402246 None:intergenic 95.0%
! GAGGGGGGGGGGGGGGGGGG+GGG + chr8_2:72402228-72402247 None:intergenic 95.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 72399591 72403663 72399591 ID=Msa1267260;Name=Msa1267260
chr8_2 mRNA 72399591 72403663 72399591 ID=Msa1267260-mRNA-1;Parent=Msa1267260;Name=Msa1267260-mRNA-1;_AED=0.09;_eAED=0.09;_QI=378|0.83|0.85|1|1|1|7|408|451
chr8_2 exon 72399591 72400283 72399591 ID=Msa1267260-mRNA-1:exon:24526;Parent=Msa1267260-mRNA-1
chr8_2 exon 72401737 72401997 72401737 ID=Msa1267260-mRNA-1:exon:24525;Parent=Msa1267260-mRNA-1
chr8_2 exon 72402070 72402195 72402070 ID=Msa1267260-mRNA-1:exon:24524;Parent=Msa1267260-mRNA-1
chr8_2 exon 72402329 72402445 72402329 ID=Msa1267260-mRNA-1:exon:24523;Parent=Msa1267260-mRNA-1
chr8_2 exon 72402533 72402614 72402533 ID=Msa1267260-mRNA-1:exon:24522;Parent=Msa1267260-mRNA-1
chr8_2 exon 72402710 72402862 72402710 ID=Msa1267260-mRNA-1:exon:24521;Parent=Msa1267260-mRNA-1
chr8_2 exon 72402954 72403663 72402954 ID=Msa1267260-mRNA-1:exon:24520;Parent=Msa1267260-mRNA-1
chr8_2 five_prime_UTR 72403286 72403663 72403286 ID=Msa1267260-mRNA-1:five_prime_utr;Parent=Msa1267260-mRNA-1
chr8_2 CDS 72402954 72403285 72402954 ID=Msa1267260-mRNA-1:cds;Parent=Msa1267260-mRNA-1
chr8_2 CDS 72402710 72402862 72402710 ID=Msa1267260-mRNA-1:cds;Parent=Msa1267260-mRNA-1
chr8_2 CDS 72402533 72402614 72402533 ID=Msa1267260-mRNA-1:cds;Parent=Msa1267260-mRNA-1
chr8_2 CDS 72402329 72402445 72402329 ID=Msa1267260-mRNA-1:cds;Parent=Msa1267260-mRNA-1
chr8_2 CDS 72402070 72402195 72402070 ID=Msa1267260-mRNA-1:cds;Parent=Msa1267260-mRNA-1
chr8_2 CDS 72401737 72401997 72401737 ID=Msa1267260-mRNA-1:cds;Parent=Msa1267260-mRNA-1
chr8_2 CDS 72399999 72400283 72399999 ID=Msa1267260-mRNA-1:cds;Parent=Msa1267260-mRNA-1
chr8_2 three_prime_UTR 72399591 72399998 72399591 ID=Msa1267260-mRNA-1:three_prime_utr;Parent=Msa1267260-mRNA-1
Gene Sequence

>Msa1267260

ATGGATGACGATGAATTGGAATTGGAATTGGAATGTTCAATTGGAATTGATGATCCTTCAATCTCAATTCCGAGGGGTGGACCCATTTACGTTTCCAATATGTCTGGCCCAATTGTTAGGGTTCCTCTTTTTCAGGATTCACTTCTTTCTCAACTTCACTCTCTCCAATCTGAATTACCTCCTGATTCGAATCATGATCATGATATTAGCGTCGATGATCTTAAAGTTTTTACTGAGGACCAGTTAATGGACATGGCTTTGAAACAACAACAAGTCTTTCAGGGTGAAAGAGACAACAATCAAAATCAACCTCCTAATGCTGCAGCAGCAGACAGGGGTCAGAACAACAAGCTCTTCAGGAGAAAGTCCCGTCGAACAAATAAACCCATTCTTGATAGTAATTGTAAAGAAAAGGTGGAGGAGGTTGTCAGAATCAAACACAAGCAGGAGGAAGATAAGGCACAAGTCACACTTCATTCATTTCAGATCAATCAATCTGCCAACAAATCAAAATCAATCAAAACTCAAAGGATGATGTCTCTTAGGTCCACAAGTTCTGCCACAAAGGTCAACACAATGGCTCTTCAGGAGCACATACCTGTGCAGGATTCAGAAGTTGTTCTCTCTATCGAGATTTACCATAATTTTCGAAAAGGTGTCAAGCTATCCAATGCCAAAAAAAAGACCCAAGAGCTGTTAGTTCTTGGTGGCCAGAACTTATCTGTATTGAGGGACAAGATCAATTGCTCAACGGACCAGGTTATGCAAAAAGCTGGCCAACATGACCCTTCTGGTTATTTTCTAATTGAGGATGTATTTTACACTGATTTGAGGGATCCATCTGCTATTGATTTGACCAGACCCATACTCGATTGGCTTCAAAACTCCAAGGAGGAGGCACAGAAGAAATGGGAATATATTATAAATGGGGAACTACAGCAAAAACAAAAGGCAATTGTCGGGGAAGCATCTGTATCACACTTGCCTCGTTTTGCATCTTTTGAGATGCACAAGATACATTTTTGTGATTTAGGTTTTCGGCTTGGTGCTGGATACCTTTATTGTCATCAGGGTAACTGTACCCATACCTTAGTAATACGAGATATGAGGTTAATTCATGCCGATGATGTACAGAATTGGGCTGTTTATCCAATTGTCACTTTTCAACTGAAGATACGTTTTCAGAAATGCGGTGTTTGCAAAATATTCAGAGCTACAAAGGTCACTGTGGATGACAAATGGACACCAGACAACCCTTGTTATTTTTGTGATGAATGTTTTTCCCTTCTTCACCTAGCAGAGGATGGCTCTCCATCGTATACCGACTTCATAGAATATGATTATAACCATGATTAA

Protein sequence

>Msa1267260

MDDDELELELECSIGIDDPSISIPRGGPIYVSNMSGPIVRVPLFQDSLLSQLHSLQSELPPDSNHDHDISVDDLKVFTEDQLMDMALKQQQVFQGERDNNQNQPPNAAAADRGQNNKLFRRKSRRTNKPILDSNCKEKVEEVVRIKHKQEEDKAQVTLHSFQINQSANKSKSIKTQRMMSLRSTSSATKVNTMALQEHIPVQDSEVVLSIEIYHNFRKGVKLSNAKKKTQELLVLGGQNLSVLRDKINCSTDQVMQKAGQHDPSGYFLIEDVFYTDLRDPSAIDLTRPILDWLQNSKEEAQKKWEYIINGELQQKQKAIVGEASVSHLPRFASFEMHKIHFCDLGFRLGAGYLYCHQGNCTHTLVIRDMRLIHADDVQNWAVYPIVTFQLKIRFQKCGVCKIFRATKVTVDDKWTPDNPCYFCDECFSLLHLAEDGSPSYTDFIEYDYNHD*