AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1259400


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1259400 MtrunA17_Chr4g0059601 96.264 348 13 0 1 348 1 348 0.0 572
Msa1259400 MtrunA17_Chr6g0451991 43.910 312 122 12 22 319 14 286 3.40e-57 188
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1259400 AT5G62910.1 44.134 358 153 10 1 345 1 324 2.64e-68 218
Msa1259400 AT5G62910.2 44.134 358 153 10 1 345 1 324 2.64e-68 218
Msa1259400 AT3G48070.1 46.328 354 149 11 1 348 1 319 6.09e-65 208
Msa1259400 AT3G48070.2 45.739 352 152 10 1 347 1 318 8.14e-64 206
Msa1259400 AT3G48070.3 47.656 256 101 8 96 347 43 269 1.84e-43 152
Msa1259400 AT1G74870.1 30.492 305 138 7 22 319 21 258 8.57e-27 107
Msa1259400 AT2G28540.2 42.105 57 27 1 273 323 9 65 9.95e-11 63.5

Find 136 sgRNAs with CRISPR-Local

Find 344 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTATCGTCTTCACAAATT+AGG 0.123066 8_2:-61041396 Msa1259400:five_prime_UTR
GTGACTGATGGTTTGAATTT+AGG 0.215191 8_2:-61040546 Msa1259400:CDS
TTGTTTCTCATTTCATCTTA+TGG 0.216723 8_2:-61039958 Msa1259400:three_prime_UTR
ATTCAATACATTGAAATAAA+TGG 0.224114 8_2:-61039877 Msa1259400:three_prime_UTR
AGTAGTGGTGGGTGTTTCTC+TGG 0.244371 8_2:-61040741 Msa1259400:CDS
TCTATCGTCTTCACAAATTA+GGG 0.279268 8_2:-61041395 Msa1259400:five_prime_UTR
ACCCTCTTTCTGAGGCAAAA+AGG 0.289977 8_2:-61041489 Msa1259400:five_prime_UTR
CCTCCAAGCTTTGCCATTAC+CGG 0.294402 8_2:+61040476 None:intergenic
CTTCAATTTCGCGGACCTAT+TGG 0.323866 8_2:+61041157 None:intergenic
GAGCAGGATGCTCGTTGTCC+TGG 0.324362 8_2:-61040240 Msa1259400:CDS
TCAAGATCCTCACAGCAAAT+TGG 0.334616 8_2:+61040336 None:intergenic
AGTTAGAGAGATAACGAAAA+TGG 0.337044 8_2:+61041438 None:intergenic
GTGTTGTGTGGCAATGATTC+CGG 0.338325 8_2:-61040816 Msa1259400:CDS
CCACACAACACACTACTATT+AGG 0.338725 8_2:+61040828 None:intergenic
TTCATAGGTCTAGTTGGTTT+AGG 0.341217 8_2:-61040012 Msa1259400:three_prime_UTR
AATGTGAAGTGGAAGCTTTA+AGG 0.357114 8_2:+61039831 None:intergenic
CGTTCCACCACTCCCTGGTT+TGG 0.368101 8_2:+61040512 None:intergenic
CTGTGAGGATCTTGATTTAA+CGG 0.370410 8_2:-61040328 Msa1259400:CDS
TGGTTTGAATTTAGGATGTT+TGG 0.374976 8_2:-61040538 Msa1259400:CDS
GATGAATCCGTTTCTGCAAC+GGG 0.375384 8_2:+61040576 None:intergenic
ATGTGAAGTGGAAGCTTTAA+GGG 0.379852 8_2:+61039832 None:intergenic
ACTCCGAATCACTGTCTTGA+TGG 0.383993 8_2:+61040874 None:intergenic
AAGAAGAAGGGTTGCAAGGA+TGG 0.391810 8_2:-61041005 Msa1259400:CDS
CTCACAGCAAATTGGACAAT+TGG 0.402448 8_2:+61040344 None:intergenic
CCACAAGAGGATTCTTGAGC+AGG 0.406130 8_2:-61040256 Msa1259400:CDS
ATGATGGATGCTTGGATGAT+TGG 0.408221 8_2:-61040659 Msa1259400:CDS
CGTTTGCTCTGTTTCCCCAC+TGG 0.408315 8_2:+61040951 None:intergenic
GAAACAGAGCAAACGTGAAT+TGG 0.411752 8_2:-61040943 Msa1259400:CDS
TGATGGATGCTTGGATGATT+GGG 0.423751 8_2:-61040658 Msa1259400:CDS
ACACTACTATTAGGACTGAT+AGG 0.429535 8_2:+61040837 None:intergenic
GCATACTATGCTGTTTCGAC+AGG 0.434123 8_2:+61040418 None:intergenic
AGAAGTAGAACATGAGGAGG+AGG 0.445552 8_2:-61040685 Msa1259400:CDS
GAATGAACCCGTTGCAGAAA+CGG 0.447105 8_2:-61040583 Msa1259400:CDS
GAGTGGTGGAACGGTTCCTC+GGG 0.449106 8_2:-61040502 Msa1259400:CDS
TGTTGTGTGGCAATGATTCC+GGG 0.450115 8_2:-61040815 Msa1259400:CDS
GTGTTAGCGGCGGAAGGAAT+CGG 0.452634 8_2:+61041300 None:intergenic
CCTCCTACAAAACGTGGATT+CGG 0.456274 8_2:+61040396 None:intergenic
GGAGTGGTGGAACGGTTCCT+CGG 0.457706 8_2:-61040503 Msa1259400:CDS
AGCAGGATGCTCGTTGTCCT+GGG 0.459006 8_2:-61040239 Msa1259400:CDS
GGAACGGTTCCTCGGGCATC+CGG 0.459152 8_2:-61040495 Msa1259400:CDS
ACGCTGCAAAATGATGGAAT+TGG 0.460023 8_2:+61039788 None:intergenic
GTTCCTCGGGCATCCGGTAA+TGG 0.460257 8_2:-61040489 Msa1259400:CDS
GCCAGGGTTCTTGGTGTTAG+CGG 0.468562 8_2:+61041287 None:intergenic
GAAGGGTTGCAAGGATGGAT+TGG 0.469248 8_2:-61041000 Msa1259400:CDS
AGTAGTAGTTCTAGTAGTGG+TGG 0.477973 8_2:-61040753 Msa1259400:CDS
CATGTGCCGTCGTCGCCAGT+GGG 0.478008 8_2:-61040966 Msa1259400:CDS
CTATGCTGTTTCGACAGGTT+GGG 0.479061 8_2:+61040423 None:intergenic
TTCAGGTGCGGTGAAGAAGA+AGG 0.484533 8_2:-61041018 Msa1259400:intron
ATGCTCGTTGTCCTGGGTGC+AGG 0.487799 8_2:-61040233 Msa1259400:CDS
GGATGTTTGGATTCCAAACC+AGG 0.490028 8_2:-61040525 Msa1259400:CDS
ACAACGACGCTGCAAAATGA+TGG 0.491457 8_2:+61039782 None:intergenic
CTTATACTGCTTCAATTTCG+CGG 0.494651 8_2:+61041148 None:intergenic
CCGGTAATGGCAAAGCTTGG+AGG 0.496535 8_2:-61040476 Msa1259400:CDS
CAAACGTGAATTGGAGAAAG+TGG 0.497957 8_2:-61040934 Msa1259400:CDS
TGGCACAGACATGCGAGACC+AGG 0.500008 8_2:+61040368 None:intergenic
ATGGAGGTAGCCTTACTCTT+CGG 0.500698 8_2:-61040167 Msa1259400:CDS
GGAGGATGATGATGGATGCT+TGG 0.501682 8_2:-61040667 Msa1259400:CDS
TTGCCTCAGAAAGAGGGTCC+AGG 0.501966 8_2:+61041494 None:intergenic
GTAGTGGTGGGTGTTTCTCT+GGG 0.502450 8_2:-61040740 Msa1259400:CDS
CCACTGGCGACGACGGCACA+TGG 0.507430 8_2:+61040967 None:intergenic
CGGAACGGCGGCGATTGAAT+CGG 0.509579 8_2:+61041320 None:intergenic
ACTATGCTGTTTCGACAGGT+TGG 0.517407 8_2:+61040422 None:intergenic
CATGAGGAGGAGGATGATGA+TGG 0.519831 8_2:-61040675 Msa1259400:CDS
AATTCCCAACGGTTCAGCTA+TGG 0.521923 8_2:-61041346 Msa1259400:exon
CTTGGATGATTGGGAGGCTG+TGG 0.524760 8_2:-61040649 Msa1259400:CDS
TGAAGAAGAAGTAGAACATG+AGG 0.527036 8_2:-61040691 Msa1259400:CDS
AGATGAATCCGTTTCTGCAA+CGG 0.528437 8_2:+61040575 None:intergenic
CTCTGGGAATATTACAGAAG+AGG 0.529198 8_2:-61040724 Msa1259400:CDS
TGTTGGTATGTGAATACATA+AGG 0.531389 8_2:-61039910 Msa1259400:three_prime_UTR
ACTATAGACAAAATGTGAAG+TGG 0.540347 8_2:+61039820 None:intergenic
AACGAGCCAACCGAAGAGTA+AGG 0.540467 8_2:+61040157 None:intergenic
GACAGGTTGGGTAAAGTCTG+AGG 0.544161 8_2:+61040435 None:intergenic
GATCCATCAAGACAGTGATT+CGG 0.544172 8_2:-61040877 Msa1259400:CDS
TTCTTGGTGTTAGCGGCGGA+AGG 0.545412 8_2:+61041294 None:intergenic
TCAGGTGCGGTGAAGAAGAA+GGG 0.549021 8_2:-61041017 Msa1259400:intron
CATCCGGTAATGGCAAAGCT+TGG 0.549211 8_2:-61040479 Msa1259400:CDS
CGGTAATGGCAAAGCTTGGA+GGG 0.552798 8_2:-61040475 Msa1259400:CDS
GAAACCATAGCTGAACCGTT+GGG 0.553539 8_2:+61041342 None:intergenic
TTGATGCGCGTCGTGAACAA+TGG 0.554675 8_2:-61041124 Msa1259400:CDS
TTGGATTCCAAACCAGGGAG+TGG 0.557492 8_2:-61040519 Msa1259400:CDS
GGAACCGTTCCACCACTCCC+TGG 0.559516 8_2:+61040507 None:intergenic
TTAAGGGAATATGCCATGGC+AGG 0.559683 8_2:+61039848 None:intergenic
GGCGAGGCGTAGAGGTGGAG+AGG 0.561849 8_2:-61040910 Msa1259400:CDS
AGAAGAAGTAGAACATGAGG+AGG 0.564899 8_2:-61040688 Msa1259400:CDS
ACTACCAGTGAAATTCGTCC+CGG 0.566478 8_2:+61040797 None:intergenic
TCATCTTGTGAAGTGACTGA+TGG 0.567881 8_2:-61040558 Msa1259400:CDS
GATTCCGGGACGAATTTCAC+TGG 0.570168 8_2:-61040801 Msa1259400:CDS
GGCTCTATGCTTCTCATCGG+CGG 0.570378 8_2:+61040614 None:intergenic
GATTCCAAACCAGGGAGTGG+TGG 0.572211 8_2:-61040516 Msa1259400:CDS
ACACTTGCTTCTGTCTCGAT+AGG 0.572811 8_2:+61040192 None:intergenic
TTCACTGGTAGTAGCAGTGG+TGG 0.572834 8_2:-61040786 Msa1259400:CDS
GTAGTAGTTCTAGTAGTGGT+GGG 0.574175 8_2:-61040752 Msa1259400:CDS
AGGTAGCCTTACTCTTCGGT+TGG 0.577834 8_2:-61040163 Msa1259400:CDS
AAACGTGAATTGGAGAAAGT+GGG 0.580491 8_2:-61040933 Msa1259400:CDS
GCCGCTAACACCAAGAACCC+TGG 0.580532 8_2:-61041288 Msa1259400:CDS
AGGGTTCTTGGTGTTAGCGG+CGG 0.581566 8_2:+61041290 None:intergenic
CAGCAAATTGGACAATTGGA+TGG 0.582722 8_2:+61040348 None:intergenic
GAGACAGAAGCAAGTGTGCA+TGG 0.583579 8_2:-61040186 Msa1259400:CDS
GGACTGATAGGACTGTTTGA+CGG 0.584911 8_2:+61040849 None:intergenic
GGAAACCATAGCTGAACCGT+TGG 0.586756 8_2:+61041341 None:intergenic
AACGGGTTCATTCTGTGAAG+AGG 0.588593 8_2:+61040593 None:intergenic
TTCATTAGTTGTGTATGCTG+TGG 0.589086 8_2:-61040094 Msa1259400:three_prime_UTR
CCACCTGGACCCTCTTTCTG+AGG 0.597398 8_2:-61041497 Msa1259400:five_prime_UTR
AGCAGTAGTAGTTCTAGTAG+TGG 0.604603 8_2:-61040756 Msa1259400:CDS
TAAATGGTTACATCCTGCCA+TGG 0.605167 8_2:-61039861 Msa1259400:three_prime_UTR
AGCTTTAAGGGAATATGCCA+TGG 0.606167 8_2:+61039844 None:intergenic
CGTGAACAATGGCTATCTCA+AGG 0.607296 8_2:-61041113 Msa1259400:intron
CCTGCTCAAGAATCCTCTTG+TGG 0.614452 8_2:+61040256 None:intergenic
TGTTTCCCCACTGGCGACGA+CGG 0.617264 8_2:+61040960 None:intergenic
AGAGGCTCTATGCTTCTCAT+CGG 0.622264 8_2:+61040611 None:intergenic
GGCACAGACATGCGAGACCA+GGG 0.623059 8_2:+61040369 None:intergenic
AGCCGAAAACCACAATTGCA+CGG 0.626352 8_2:+61040291 None:intergenic
ACAGGTTGGGTAAAGTCTGA+GGG 0.629189 8_2:+61040436 None:intergenic
AACGTGAATTGGAGAAAGTG+GGG 0.634840 8_2:-61040932 Msa1259400:CDS
CAAACCAGGGAGTGGTGGAA+CGG 0.635703 8_2:-61040511 Msa1259400:CDS
TCATATTGCTTCCTGCACCC+AGG 0.637371 8_2:+61040222 None:intergenic
AATTTCACTGGTAGTAGCAG+TGG 0.639931 8_2:-61040789 Msa1259400:CDS
GAAATCCGATAAAATCCACC+TGG 0.644433 8_2:-61041512 Msa1259400:five_prime_UTR
GAGATAACGAAAATGGATCA+CGG 0.646784 8_2:+61041445 None:intergenic
CAATTGTCCAATTTGCTGTG+AGG 0.649475 8_2:-61040343 Msa1259400:CDS
CCTCAGAAAGAGGGTCCAGG+TGG 0.650167 8_2:+61041497 None:intergenic
GGTGAAGAAGAAGGGTTGCA+AGG 0.653357 8_2:-61041009 Msa1259400:CDS
ATGTGCCGTCGTCGCCAGTG+GGG 0.653421 8_2:-61040965 Msa1259400:CDS
GGCGGAAGGAATCGGAACGG+CGG 0.658597 8_2:+61041308 None:intergenic
GTTCTGTTAGCATGATCGAA+AGG 0.664821 8_2:-61040137 Msa1259400:CDS
GGAACCCCTCCTACAAAACG+TGG 0.666447 8_2:+61040390 None:intergenic
TCGAAAATATCAATTCCCAA+CGG 0.672881 8_2:-61041357 Msa1259400:five_prime_UTR
TGGATGCTTGGATGATTGGG+AGG 0.674598 8_2:-61040655 Msa1259400:CDS
GATGTTTGGATTCCAAACCA+GGG 0.680935 8_2:-61040524 Msa1259400:CDS
AGCGGCGGAAGGAATCGGAA+CGG 0.682697 8_2:+61041305 None:intergenic
TGGTATGTGAATACATAAGG+TGG 0.685753 8_2:-61039907 Msa1259400:three_prime_UTR
ACGTGAATTGGAGAAAGTGG+GGG 0.693905 8_2:-61040931 Msa1259400:CDS
TTAATGTAGAATACTCATGT+TGG 0.699610 8_2:-61039927 Msa1259400:three_prime_UTR
GGTTGGGTAAAGTCTGAGGG+CGG 0.713101 8_2:+61040439 None:intergenic
ACAGAAGCAAGTGTGCATGG+AGG 0.724066 8_2:-61040183 Msa1259400:CDS
CCTAATAGTAGTGTGTTGTG+TGG 0.739406 8_2:-61040828 Msa1259400:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAAAATTATATAATCGAAAT+TGG + chr8_2:61040023-61040042 None:intergenic 15.0%
!!! TAATTTTGTTATCTTTGTTA+TGG - chr8_2:61040213-61040232 Msa1259400:CDS 15.0%
!! ATTCAATACATTGAAATAAA+TGG - chr8_2:61041380-61041399 Msa1259400:five_prime_UTR 15.0%
!! GAAAATTATATAATCGAAAT+TGG + chr8_2:61040023-61040042 None:intergenic 15.0%
!!! TAATTTTGTTATCTTTGTTA+TGG - chr8_2:61040213-61040232 Msa1259400:CDS 15.0%
!! ATTCAATACATTGAAATAAA+TGG - chr8_2:61041380-61041399 Msa1259400:five_prime_UTR 15.0%
!! TTTTATCGGATTTCAGTTTA+CGG + chr8_2:61039739-61039758 None:intergenic 25.0%
!!! CGATTTTTGTTTTGATCTAA+TGG - chr8_2:61040185-61040204 Msa1259400:CDS 25.0%
!!! TATCTTTGTTATGGTTTTTC+AGG - chr8_2:61040222-61040241 Msa1259400:CDS 25.0%
!! TTGGAACATCTAATTTTCAT+AGG - chr8_2:61041230-61041249 Msa1259400:intron 25.0%
!! TTGTTTCTCATTTCATCTTA+TGG - chr8_2:61041299-61041318 Msa1259400:CDS 25.0%
! TTAATGTAGAATACTCATGT+TGG - chr8_2:61041330-61041349 Msa1259400:CDS 25.0%
!! TTTTATCGGATTTCAGTTTA+CGG + chr8_2:61039739-61039758 None:intergenic 25.0%
!!! CGATTTTTGTTTTGATCTAA+TGG - chr8_2:61040185-61040204 Msa1259400:CDS 25.0%
!!! TATCTTTGTTATGGTTTTTC+AGG - chr8_2:61040222-61040241 Msa1259400:CDS 25.0%
!! TTGGAACATCTAATTTTCAT+AGG - chr8_2:61041230-61041249 Msa1259400:intron 25.0%
!! TTGTTTCTCATTTCATCTTA+TGG - chr8_2:61041299-61041318 Msa1259400:CDS 25.0%
! TTAATGTAGAATACTCATGT+TGG - chr8_2:61041330-61041349 Msa1259400:CDS 25.0%
AGTTAGAGAGATAACGAAAA+TGG + chr8_2:61039822-61039841 None:intergenic 30.0%
TTCTATCGTCTTCACAAATT+AGG - chr8_2:61039861-61039880 Msa1259400:three_prime_UTR 30.0%
TCTATCGTCTTCACAAATTA+GGG - chr8_2:61039862-61039881 Msa1259400:three_prime_UTR 30.0%
TCGAAAATATCAATTCCCAA+CGG - chr8_2:61039900-61039919 Msa1259400:three_prime_UTR 30.0%
! AATTCGATTTTCAGACCAAT+AGG - chr8_2:61040085-61040104 Msa1259400:three_prime_UTR 30.0%
! TGGTTTGAATTTAGGATGTT+TGG - chr8_2:61040719-61040738 Msa1259400:CDS 30.0%
! CTAATTTTCATAGGTCTAGT+TGG - chr8_2:61041239-61041258 Msa1259400:intron 30.0%
TGTTGGTATGTGAATACATA+AGG - chr8_2:61041347-61041366 Msa1259400:exon 30.0%
ACTATAGACAAAATGTGAAG+TGG + chr8_2:61041440-61041459 None:intergenic 30.0%
AGTTAGAGAGATAACGAAAA+TGG + chr8_2:61039822-61039841 None:intergenic 30.0%
TTCTATCGTCTTCACAAATT+AGG - chr8_2:61039861-61039880 Msa1259400:three_prime_UTR 30.0%
TCTATCGTCTTCACAAATTA+GGG - chr8_2:61039862-61039881 Msa1259400:three_prime_UTR 30.0%
TCGAAAATATCAATTCCCAA+CGG - chr8_2:61039900-61039919 Msa1259400:three_prime_UTR 30.0%
! AATTCGATTTTCAGACCAAT+AGG - chr8_2:61040085-61040104 Msa1259400:three_prime_UTR 30.0%
! TGGTTTGAATTTAGGATGTT+TGG - chr8_2:61040719-61040738 Msa1259400:CDS 30.0%
! CTAATTTTCATAGGTCTAGT+TGG - chr8_2:61041239-61041258 Msa1259400:intron 30.0%
TGTTGGTATGTGAATACATA+AGG - chr8_2:61041347-61041366 Msa1259400:exon 30.0%
ACTATAGACAAAATGTGAAG+TGG + chr8_2:61041440-61041459 None:intergenic 30.0%
GAGATAACGAAAATGGATCA+CGG + chr8_2:61039815-61039834 None:intergenic 35.0%
CTTATACTGCTTCAATTTCG+CGG + chr8_2:61040112-61040131 None:intergenic 35.0%
!!! TTGTTATGGTTTTTCAGGTG+CGG - chr8_2:61040227-61040246 Msa1259400:CDS 35.0%
AAACGTGAATTGGAGAAAGT+GGG - chr8_2:61040324-61040343 Msa1259400:CDS 35.0%
ACACTACTATTAGGACTGAT+AGG + chr8_2:61040423-61040442 None:intergenic 35.0%
TGAAGAAGAAGTAGAACATG+AGG - chr8_2:61040566-61040585 Msa1259400:CDS 35.0%
GTGACTGATGGTTTGAATTT+AGG - chr8_2:61040711-61040730 Msa1259400:CDS 35.0%
CTGTGAGGATCTTGATTTAA+CGG - chr8_2:61040929-61040948 Msa1259400:CDS 35.0%
TTCATTAGTTGTGTATGCTG+TGG - chr8_2:61041163-61041182 Msa1259400:intron 35.0%
CGACGCAAATAATGCAAAAA+AGG + chr8_2:61041194-61041213 None:intergenic 35.0%
! TCGTCTGTAATTTTCTAGGT+TGG - chr8_2:61041211-61041230 Msa1259400:intron 35.0%
! TTCATAGGTCTAGTTGGTTT+AGG - chr8_2:61041245-61041264 Msa1259400:intron 35.0%
TGGTATGTGAATACATAAGG+TGG - chr8_2:61041350-61041369 Msa1259400:five_prime_UTR 35.0%
! ATGTGAAGTGGAAGCTTTAA+GGG + chr8_2:61041428-61041447 None:intergenic 35.0%
AATGTGAAGTGGAAGCTTTA+AGG + chr8_2:61041429-61041448 None:intergenic 35.0%
GAGATAACGAAAATGGATCA+CGG + chr8_2:61039815-61039834 None:intergenic 35.0%
CTTATACTGCTTCAATTTCG+CGG + chr8_2:61040112-61040131 None:intergenic 35.0%
!!! TTGTTATGGTTTTTCAGGTG+CGG - chr8_2:61040227-61040246 Msa1259400:CDS 35.0%
AAACGTGAATTGGAGAAAGT+GGG - chr8_2:61040324-61040343 Msa1259400:CDS 35.0%
ACACTACTATTAGGACTGAT+AGG + chr8_2:61040423-61040442 None:intergenic 35.0%
TGAAGAAGAAGTAGAACATG+AGG - chr8_2:61040566-61040585 Msa1259400:CDS 35.0%
GTGACTGATGGTTTGAATTT+AGG - chr8_2:61040711-61040730 Msa1259400:CDS 35.0%
CTGTGAGGATCTTGATTTAA+CGG - chr8_2:61040929-61040948 Msa1259400:CDS 35.0%
TTCATTAGTTGTGTATGCTG+TGG - chr8_2:61041163-61041182 Msa1259400:intron 35.0%
CGACGCAAATAATGCAAAAA+AGG + chr8_2:61041194-61041213 None:intergenic 35.0%
! TCGTCTGTAATTTTCTAGGT+TGG - chr8_2:61041211-61041230 Msa1259400:intron 35.0%
! TTCATAGGTCTAGTTGGTTT+AGG - chr8_2:61041245-61041264 Msa1259400:intron 35.0%
TGGTATGTGAATACATAAGG+TGG - chr8_2:61041350-61041369 Msa1259400:five_prime_UTR 35.0%
! ATGTGAAGTGGAAGCTTTAA+GGG + chr8_2:61041428-61041447 None:intergenic 35.0%
AATGTGAAGTGGAAGCTTTA+AGG + chr8_2:61041429-61041448 None:intergenic 35.0%
GAAATCCGATAAAATCCACC+TGG - chr8_2:61039745-61039764 Msa1259400:three_prime_UTR 40.0%
! TTACCCTCTTCTTTTTGCCA+GGG + chr8_2:61039989-61040008 None:intergenic 40.0%
GAAACAGAGCAAACGTGAAT+TGG - chr8_2:61040314-61040333 Msa1259400:CDS 40.0%
CAAACGTGAATTGGAGAAAG+TGG - chr8_2:61040323-61040342 Msa1259400:CDS 40.0%
AACGTGAATTGGAGAAAGTG+GGG - chr8_2:61040325-61040344 Msa1259400:CDS 40.0%
GATCCATCAAGACAGTGATT+CGG - chr8_2:61040380-61040399 Msa1259400:CDS 40.0%
CCACACAACACACTACTATT+AGG + chr8_2:61040432-61040451 None:intergenic 40.0%
CCTAATAGTAGTGTGTTGTG+TGG - chr8_2:61040429-61040448 Msa1259400:CDS 40.0%
AATTTCACTGGTAGTAGCAG+TGG - chr8_2:61040468-61040487 Msa1259400:CDS 40.0%
!! AGCAGTAGTAGTTCTAGTAG+TGG - chr8_2:61040501-61040520 Msa1259400:CDS 40.0%
!! AGTAGTAGTTCTAGTAGTGG+TGG - chr8_2:61040504-61040523 Msa1259400:CDS 40.0%
!! GTAGTAGTTCTAGTAGTGGT+GGG - chr8_2:61040505-61040524 Msa1259400:CDS 40.0%
! CTCTGGGAATATTACAGAAG+AGG - chr8_2:61040533-61040552 Msa1259400:CDS 40.0%
AGAAGAAGTAGAACATGAGG+AGG - chr8_2:61040569-61040588 Msa1259400:CDS 40.0%
!! ATGATGGATGCTTGGATGAT+TGG - chr8_2:61040598-61040617 Msa1259400:CDS 40.0%
! TGATGGATGCTTGGATGATT+GGG - chr8_2:61040599-61040618 Msa1259400:CDS 40.0%
AGATGAATCCGTTTCTGCAA+CGG + chr8_2:61040685-61040704 None:intergenic 40.0%
TCATCTTGTGAAGTGACTGA+TGG - chr8_2:61040699-61040718 Msa1259400:CDS 40.0%
GATGTTTGGATTCCAAACCA+GGG - chr8_2:61040733-61040752 Msa1259400:CDS 40.0%
CAGCAAATTGGACAATTGGA+TGG + chr8_2:61040912-61040931 None:intergenic 40.0%
CTCACAGCAAATTGGACAAT+TGG + chr8_2:61040916-61040935 None:intergenic 40.0%
!! CAATTGTCCAATTTGCTGTG+AGG - chr8_2:61040914-61040933 Msa1259400:CDS 40.0%
TCAAGATCCTCACAGCAAAT+TGG + chr8_2:61040924-61040943 None:intergenic 40.0%
! AGTTTTCTTCCGTGCAATTG+TGG - chr8_2:61040957-61040976 Msa1259400:CDS 40.0%
! TTCCGTGCAATTGTGGTTTT+CGG - chr8_2:61040964-61040983 Msa1259400:CDS 40.0%
! TTTGTCTCTTTTGCCACAAG+AGG - chr8_2:61040988-61041007 Msa1259400:CDS 40.0%
GTTCTGTTAGCATGATCGAA+AGG - chr8_2:61041120-61041139 Msa1259400:CDS 40.0%
! TGCGTCGTCTGTAATTTTCT+AGG - chr8_2:61041207-61041226 Msa1259400:intron 40.0%
TAAATGGTTACATCCTGCCA+TGG - chr8_2:61041396-61041415 Msa1259400:five_prime_UTR 40.0%
!! AGCTTTAAGGGAATATGCCA+TGG + chr8_2:61041416-61041435 None:intergenic 40.0%
! ACGCTGCAAAATGATGGAAT+TGG + chr8_2:61041472-61041491 None:intergenic 40.0%
GAAATCCGATAAAATCCACC+TGG - chr8_2:61039745-61039764 Msa1259400:three_prime_UTR 40.0%
! TTACCCTCTTCTTTTTGCCA+GGG + chr8_2:61039989-61040008 None:intergenic 40.0%
GAAACAGAGCAAACGTGAAT+TGG - chr8_2:61040314-61040333 Msa1259400:CDS 40.0%
CAAACGTGAATTGGAGAAAG+TGG - chr8_2:61040323-61040342 Msa1259400:CDS 40.0%
AACGTGAATTGGAGAAAGTG+GGG - chr8_2:61040325-61040344 Msa1259400:CDS 40.0%
GATCCATCAAGACAGTGATT+CGG - chr8_2:61040380-61040399 Msa1259400:CDS 40.0%
CCACACAACACACTACTATT+AGG + chr8_2:61040432-61040451 None:intergenic 40.0%
CCTAATAGTAGTGTGTTGTG+TGG - chr8_2:61040429-61040448 Msa1259400:CDS 40.0%
AATTTCACTGGTAGTAGCAG+TGG - chr8_2:61040468-61040487 Msa1259400:CDS 40.0%
!! AGCAGTAGTAGTTCTAGTAG+TGG - chr8_2:61040501-61040520 Msa1259400:CDS 40.0%
!! AGTAGTAGTTCTAGTAGTGG+TGG - chr8_2:61040504-61040523 Msa1259400:CDS 40.0%
!! GTAGTAGTTCTAGTAGTGGT+GGG - chr8_2:61040505-61040524 Msa1259400:CDS 40.0%
! CTCTGGGAATATTACAGAAG+AGG - chr8_2:61040533-61040552 Msa1259400:CDS 40.0%
AGAAGAAGTAGAACATGAGG+AGG - chr8_2:61040569-61040588 Msa1259400:CDS 40.0%
!! ATGATGGATGCTTGGATGAT+TGG - chr8_2:61040598-61040617 Msa1259400:CDS 40.0%
! TGATGGATGCTTGGATGATT+GGG - chr8_2:61040599-61040618 Msa1259400:CDS 40.0%
AGATGAATCCGTTTCTGCAA+CGG + chr8_2:61040685-61040704 None:intergenic 40.0%
TCATCTTGTGAAGTGACTGA+TGG - chr8_2:61040699-61040718 Msa1259400:CDS 40.0%
GATGTTTGGATTCCAAACCA+GGG - chr8_2:61040733-61040752 Msa1259400:CDS 40.0%
CAGCAAATTGGACAATTGGA+TGG + chr8_2:61040912-61040931 None:intergenic 40.0%
CTCACAGCAAATTGGACAAT+TGG + chr8_2:61040916-61040935 None:intergenic 40.0%
!! CAATTGTCCAATTTGCTGTG+AGG - chr8_2:61040914-61040933 Msa1259400:CDS 40.0%
TCAAGATCCTCACAGCAAAT+TGG + chr8_2:61040924-61040943 None:intergenic 40.0%
! AGTTTTCTTCCGTGCAATTG+TGG - chr8_2:61040957-61040976 Msa1259400:CDS 40.0%
! TTCCGTGCAATTGTGGTTTT+CGG - chr8_2:61040964-61040983 Msa1259400:CDS 40.0%
! TTTGTCTCTTTTGCCACAAG+AGG - chr8_2:61040988-61041007 Msa1259400:CDS 40.0%
GTTCTGTTAGCATGATCGAA+AGG - chr8_2:61041120-61041139 Msa1259400:CDS 40.0%
! TGCGTCGTCTGTAATTTTCT+AGG - chr8_2:61041207-61041226 Msa1259400:intron 40.0%
TAAATGGTTACATCCTGCCA+TGG - chr8_2:61041396-61041415 Msa1259400:five_prime_UTR 40.0%
!! AGCTTTAAGGGAATATGCCA+TGG + chr8_2:61041416-61041435 None:intergenic 40.0%
! ACGCTGCAAAATGATGGAAT+TGG + chr8_2:61041472-61041491 None:intergenic 40.0%
!! AGGGTCCAGGTGGATTTTAT+CGG + chr8_2:61039753-61039772 None:intergenic 45.0%
!! ACCCTCTTTCTGAGGCAAAA+AGG - chr8_2:61039768-61039787 Msa1259400:three_prime_UTR 45.0%
! CCCTTTTTGCCTCAGAAAGA+GGG + chr8_2:61039772-61039791 None:intergenic 45.0%
!! CCCTCTTTCTGAGGCAAAAA+GGG - chr8_2:61039769-61039788 Msa1259400:three_prime_UTR 45.0%
AATTCCCAACGGTTCAGCTA+TGG - chr8_2:61039911-61039930 Msa1259400:three_prime_UTR 45.0%
GAAACCATAGCTGAACCGTT+GGG + chr8_2:61039918-61039937 None:intergenic 45.0%
! CTTCTTTTTGCCAGGGTTCT+TGG + chr8_2:61039982-61040001 None:intergenic 45.0%
AGAACCCTGGCAAAAAGAAG+AGG - chr8_2:61039982-61040001 Msa1259400:three_prime_UTR 45.0%
GAACCCTGGCAAAAAGAAGA+GGG - chr8_2:61039983-61040002 Msa1259400:three_prime_UTR 45.0%
! CTTACCCTCTTCTTTTTGCC+AGG + chr8_2:61039990-61040009 None:intergenic 45.0%
CTGGCAAAAAGAAGAGGGTA+AGG - chr8_2:61039988-61040007 Msa1259400:three_prime_UTR 45.0%
CTTCAATTTCGCGGACCTAT+TGG + chr8_2:61040103-61040122 None:intergenic 45.0%
CGTGAACAATGGCTATCTCA+AGG - chr8_2:61040144-61040163 Msa1259400:CDS 45.0%
AAGAAGAAGGGTTGCAAGGA+TGG - chr8_2:61040252-61040271 Msa1259400:CDS 45.0%
ACGTGAATTGGAGAAAGTGG+GGG - chr8_2:61040326-61040345 Msa1259400:CDS 45.0%
ACTCCGAATCACTGTCTTGA+TGG + chr8_2:61040386-61040405 None:intergenic 45.0%
GGACTGATAGGACTGTTTGA+CGG + chr8_2:61040411-61040430 None:intergenic 45.0%
GTGTTGTGTGGCAATGATTC+CGG - chr8_2:61040441-61040460 Msa1259400:CDS 45.0%
TGTTGTGTGGCAATGATTCC+GGG - chr8_2:61040442-61040461 Msa1259400:CDS 45.0%
ACTACCAGTGAAATTCGTCC+CGG + chr8_2:61040463-61040482 None:intergenic 45.0%
AGAAGTAGAACATGAGGAGG+AGG - chr8_2:61040572-61040591 Msa1259400:CDS 45.0%
AGAGGCTCTATGCTTCTCAT+CGG + chr8_2:61040649-61040668 None:intergenic 45.0%
! AACGGGTTCATTCTGTGAAG+AGG + chr8_2:61040667-61040686 None:intergenic 45.0%
GAATGAACCCGTTGCAGAAA+CGG - chr8_2:61040674-61040693 Msa1259400:CDS 45.0%
GATGAATCCGTTTCTGCAAC+GGG + chr8_2:61040684-61040703 None:intergenic 45.0%
GGATGTTTGGATTCCAAACC+AGG - chr8_2:61040732-61040751 Msa1259400:CDS 45.0%
! ACAGGTTGGGTAAAGTCTGA+GGG + chr8_2:61040824-61040843 None:intergenic 45.0%
!! CTATGCTGTTTCGACAGGTT+GGG + chr8_2:61040837-61040856 None:intergenic 45.0%
!! ACTATGCTGTTTCGACAGGT+TGG + chr8_2:61040838-61040857 None:intergenic 45.0%
!! GCATACTATGCTGTTTCGAC+AGG + chr8_2:61040842-61040861 None:intergenic 45.0%
! ATGCCGAATCCACGTTTTGT+AGG - chr8_2:61040858-61040877 Msa1259400:CDS 45.0%
CCTCCTACAAAACGTGGATT+CGG + chr8_2:61040864-61040883 None:intergenic 45.0%
! CGAATCCACGTTTTGTAGGA+GGG - chr8_2:61040862-61040881 Msa1259400:CDS 45.0%
! GAATCCACGTTTTGTAGGAG+GGG - chr8_2:61040863-61040882 Msa1259400:CDS 45.0%
AGCCGAAAACCACAATTGCA+CGG + chr8_2:61040969-61040988 None:intergenic 45.0%
ACACTTGCTTCTGTCTCGAT+AGG + chr8_2:61041068-61041087 None:intergenic 45.0%
! ATGGAGGTAGCCTTACTCTT+CGG - chr8_2:61041090-61041109 Msa1259400:intron 45.0%
TTAAGGGAATATGCCATGGC+AGG + chr8_2:61041412-61041431 None:intergenic 45.0%
ACAACGACGCTGCAAAATGA+TGG + chr8_2:61041478-61041497 None:intergenic 45.0%
!! AGGGTCCAGGTGGATTTTAT+CGG + chr8_2:61039753-61039772 None:intergenic 45.0%
!! ACCCTCTTTCTGAGGCAAAA+AGG - chr8_2:61039768-61039787 Msa1259400:three_prime_UTR 45.0%
! CCCTTTTTGCCTCAGAAAGA+GGG + chr8_2:61039772-61039791 None:intergenic 45.0%
!! CCCTCTTTCTGAGGCAAAAA+GGG - chr8_2:61039769-61039788 Msa1259400:three_prime_UTR 45.0%
AATTCCCAACGGTTCAGCTA+TGG - chr8_2:61039911-61039930 Msa1259400:three_prime_UTR 45.0%
GAAACCATAGCTGAACCGTT+GGG + chr8_2:61039918-61039937 None:intergenic 45.0%
! CTTCTTTTTGCCAGGGTTCT+TGG + chr8_2:61039982-61040001 None:intergenic 45.0%
AGAACCCTGGCAAAAAGAAG+AGG - chr8_2:61039982-61040001 Msa1259400:three_prime_UTR 45.0%
GAACCCTGGCAAAAAGAAGA+GGG - chr8_2:61039983-61040002 Msa1259400:three_prime_UTR 45.0%
! CTTACCCTCTTCTTTTTGCC+AGG + chr8_2:61039990-61040009 None:intergenic 45.0%
CTGGCAAAAAGAAGAGGGTA+AGG - chr8_2:61039988-61040007 Msa1259400:three_prime_UTR 45.0%
CTTCAATTTCGCGGACCTAT+TGG + chr8_2:61040103-61040122 None:intergenic 45.0%
CGTGAACAATGGCTATCTCA+AGG - chr8_2:61040144-61040163 Msa1259400:CDS 45.0%
AAGAAGAAGGGTTGCAAGGA+TGG - chr8_2:61040252-61040271 Msa1259400:CDS 45.0%
ACGTGAATTGGAGAAAGTGG+GGG - chr8_2:61040326-61040345 Msa1259400:CDS 45.0%
ACTCCGAATCACTGTCTTGA+TGG + chr8_2:61040386-61040405 None:intergenic 45.0%
GGACTGATAGGACTGTTTGA+CGG + chr8_2:61040411-61040430 None:intergenic 45.0%
GTGTTGTGTGGCAATGATTC+CGG - chr8_2:61040441-61040460 Msa1259400:CDS 45.0%
TGTTGTGTGGCAATGATTCC+GGG - chr8_2:61040442-61040461 Msa1259400:CDS 45.0%
ACTACCAGTGAAATTCGTCC+CGG + chr8_2:61040463-61040482 None:intergenic 45.0%
AGAAGTAGAACATGAGGAGG+AGG - chr8_2:61040572-61040591 Msa1259400:CDS 45.0%
AGAGGCTCTATGCTTCTCAT+CGG + chr8_2:61040649-61040668 None:intergenic 45.0%
! AACGGGTTCATTCTGTGAAG+AGG + chr8_2:61040667-61040686 None:intergenic 45.0%
GAATGAACCCGTTGCAGAAA+CGG - chr8_2:61040674-61040693 Msa1259400:CDS 45.0%
GATGAATCCGTTTCTGCAAC+GGG + chr8_2:61040684-61040703 None:intergenic 45.0%
GGATGTTTGGATTCCAAACC+AGG - chr8_2:61040732-61040751 Msa1259400:CDS 45.0%
! ACAGGTTGGGTAAAGTCTGA+GGG + chr8_2:61040824-61040843 None:intergenic 45.0%
!! CTATGCTGTTTCGACAGGTT+GGG + chr8_2:61040837-61040856 None:intergenic 45.0%
!! ACTATGCTGTTTCGACAGGT+TGG + chr8_2:61040838-61040857 None:intergenic 45.0%
!! GCATACTATGCTGTTTCGAC+AGG + chr8_2:61040842-61040861 None:intergenic 45.0%
! ATGCCGAATCCACGTTTTGT+AGG - chr8_2:61040858-61040877 Msa1259400:CDS 45.0%
CCTCCTACAAAACGTGGATT+CGG + chr8_2:61040864-61040883 None:intergenic 45.0%
! CGAATCCACGTTTTGTAGGA+GGG - chr8_2:61040862-61040881 Msa1259400:CDS 45.0%
! GAATCCACGTTTTGTAGGAG+GGG - chr8_2:61040863-61040882 Msa1259400:CDS 45.0%
AGCCGAAAACCACAATTGCA+CGG + chr8_2:61040969-61040988 None:intergenic 45.0%
ACACTTGCTTCTGTCTCGAT+AGG + chr8_2:61041068-61041087 None:intergenic 45.0%
! ATGGAGGTAGCCTTACTCTT+CGG - chr8_2:61041090-61041109 Msa1259400:intron 45.0%
TTAAGGGAATATGCCATGGC+AGG + chr8_2:61041412-61041431 None:intergenic 45.0%
ACAACGACGCTGCAAAATGA+TGG + chr8_2:61041478-61041497 None:intergenic 45.0%
! GCCCTTTTTGCCTCAGAAAG+AGG + chr8_2:61039773-61039792 None:intergenic 50.0%
! TCTGAGGCAAAAAGGGCGAA+AGG - chr8_2:61039776-61039795 Msa1259400:three_prime_UTR 50.0%
GGAAACCATAGCTGAACCGT+TGG + chr8_2:61039919-61039938 None:intergenic 50.0%
TTGATGCGCGTCGTGAACAA+TGG - chr8_2:61040133-61040152 Msa1259400:CDS 50.0%
TTCAGGTGCGGTGAAGAAGA+AGG - chr8_2:61040239-61040258 Msa1259400:CDS 50.0%
TCAGGTGCGGTGAAGAAGAA+GGG - chr8_2:61040240-61040259 Msa1259400:CDS 50.0%
GGTGAAGAAGAAGGGTTGCA+AGG - chr8_2:61040248-61040267 Msa1259400:CDS 50.0%
GAAGGGTTGCAAGGATGGAT+TGG - chr8_2:61040257-61040276 Msa1259400:CDS 50.0%
GATTCCGGGACGAATTTCAC+TGG - chr8_2:61040456-61040475 Msa1259400:CDS 50.0%
TTCACTGGTAGTAGCAGTGG+TGG - chr8_2:61040471-61040490 Msa1259400:CDS 50.0%
!! AGTAGTGGTGGGTGTTTCTC+TGG - chr8_2:61040516-61040535 Msa1259400:CDS 50.0%
!! GTAGTGGTGGGTGTTTCTCT+GGG - chr8_2:61040517-61040536 Msa1259400:CDS 50.0%
CATGAGGAGGAGGATGATGA+TGG - chr8_2:61040582-61040601 Msa1259400:CDS 50.0%
!! GGAGGATGATGATGGATGCT+TGG - chr8_2:61040590-61040609 Msa1259400:CDS 50.0%
TGGATGCTTGGATGATTGGG+AGG - chr8_2:61040602-61040621 Msa1259400:CDS 50.0%
TTGGATTCCAAACCAGGGAG+TGG - chr8_2:61040738-61040757 Msa1259400:CDS 50.0%
! CATCCGGTAATGGCAAAGCT+TGG - chr8_2:61040778-61040797 Msa1259400:CDS 50.0%
CCTCCAAGCTTTGCCATTAC+CGG + chr8_2:61040784-61040803 None:intergenic 50.0%
! CGGTAATGGCAAAGCTTGGA+GGG - chr8_2:61040782-61040801 Msa1259400:CDS 50.0%
! GACAGGTTGGGTAAAGTCTG+AGG + chr8_2:61040825-61040844 None:intergenic 50.0%
! CCGAATCCACGTTTTGTAGG+AGG - chr8_2:61040861-61040880 Msa1259400:CDS 50.0%
CCTGCTCAAGAATCCTCTTG+TGG + chr8_2:61041004-61041023 None:intergenic 50.0%
CCACAAGAGGATTCTTGAGC+AGG - chr8_2:61041001-61041020 Msa1259400:CDS 50.0%
TCATATTGCTTCCTGCACCC+AGG + chr8_2:61041038-61041057 None:intergenic 50.0%
GAGACAGAAGCAAGTGTGCA+TGG - chr8_2:61041071-61041090 Msa1259400:intron 50.0%
ACAGAAGCAAGTGTGCATGG+AGG - chr8_2:61041074-61041093 Msa1259400:intron 50.0%
! AGGTAGCCTTACTCTTCGGT+TGG - chr8_2:61041094-61041113 Msa1259400:intron 50.0%
AACGAGCCAACCGAAGAGTA+AGG + chr8_2:61041103-61041122 None:intergenic 50.0%
! GCCCTTTTTGCCTCAGAAAG+AGG + chr8_2:61039773-61039792 None:intergenic 50.0%
! TCTGAGGCAAAAAGGGCGAA+AGG - chr8_2:61039776-61039795 Msa1259400:three_prime_UTR 50.0%
GGAAACCATAGCTGAACCGT+TGG + chr8_2:61039919-61039938 None:intergenic 50.0%
TTGATGCGCGTCGTGAACAA+TGG - chr8_2:61040133-61040152 Msa1259400:CDS 50.0%
TTCAGGTGCGGTGAAGAAGA+AGG - chr8_2:61040239-61040258 Msa1259400:CDS 50.0%
TCAGGTGCGGTGAAGAAGAA+GGG - chr8_2:61040240-61040259 Msa1259400:CDS 50.0%
GGTGAAGAAGAAGGGTTGCA+AGG - chr8_2:61040248-61040267 Msa1259400:CDS 50.0%
GAAGGGTTGCAAGGATGGAT+TGG - chr8_2:61040257-61040276 Msa1259400:CDS 50.0%
GATTCCGGGACGAATTTCAC+TGG - chr8_2:61040456-61040475 Msa1259400:CDS 50.0%
TTCACTGGTAGTAGCAGTGG+TGG - chr8_2:61040471-61040490 Msa1259400:CDS 50.0%
!! AGTAGTGGTGGGTGTTTCTC+TGG - chr8_2:61040516-61040535 Msa1259400:CDS 50.0%
!! GTAGTGGTGGGTGTTTCTCT+GGG - chr8_2:61040517-61040536 Msa1259400:CDS 50.0%
CATGAGGAGGAGGATGATGA+TGG - chr8_2:61040582-61040601 Msa1259400:CDS 50.0%
!! GGAGGATGATGATGGATGCT+TGG - chr8_2:61040590-61040609 Msa1259400:CDS 50.0%
TGGATGCTTGGATGATTGGG+AGG - chr8_2:61040602-61040621 Msa1259400:CDS 50.0%
TTGGATTCCAAACCAGGGAG+TGG - chr8_2:61040738-61040757 Msa1259400:CDS 50.0%
! CATCCGGTAATGGCAAAGCT+TGG - chr8_2:61040778-61040797 Msa1259400:CDS 50.0%
CCTCCAAGCTTTGCCATTAC+CGG + chr8_2:61040784-61040803 None:intergenic 50.0%
! CGGTAATGGCAAAGCTTGGA+GGG - chr8_2:61040782-61040801 Msa1259400:CDS 50.0%
! GACAGGTTGGGTAAAGTCTG+AGG + chr8_2:61040825-61040844 None:intergenic 50.0%
! CCGAATCCACGTTTTGTAGG+AGG - chr8_2:61040861-61040880 Msa1259400:CDS 50.0%
CCTGCTCAAGAATCCTCTTG+TGG + chr8_2:61041004-61041023 None:intergenic 50.0%
CCACAAGAGGATTCTTGAGC+AGG - chr8_2:61041001-61041020 Msa1259400:CDS 50.0%
TCATATTGCTTCCTGCACCC+AGG + chr8_2:61041038-61041057 None:intergenic 50.0%
GAGACAGAAGCAAGTGTGCA+TGG - chr8_2:61041071-61041090 Msa1259400:intron 50.0%
ACAGAAGCAAGTGTGCATGG+AGG - chr8_2:61041074-61041093 Msa1259400:intron 50.0%
! AGGTAGCCTTACTCTTCGGT+TGG - chr8_2:61041094-61041113 Msa1259400:intron 50.0%
AACGAGCCAACCGAAGAGTA+AGG + chr8_2:61041103-61041122 None:intergenic 50.0%
TTGCCTCAGAAAGAGGGTCC+AGG + chr8_2:61039766-61039785 None:intergenic 55.0%
GTGTTAGCGGCGGAAGGAAT+CGG + chr8_2:61039960-61039979 None:intergenic 55.0%
!! TTCTTGGTGTTAGCGGCGGA+AGG + chr8_2:61039966-61039985 None:intergenic 55.0%
!! AGGGTTCTTGGTGTTAGCGG+CGG + chr8_2:61039970-61039989 None:intergenic 55.0%
!! GCCAGGGTTCTTGGTGTTAG+CGG + chr8_2:61039973-61039992 None:intergenic 55.0%
CGTTTGCTCTGTTTCCCCAC+TGG + chr8_2:61040309-61040328 None:intergenic 55.0%
AATTGGAGAAAGTGGGGGCG+AGG - chr8_2:61040331-61040350 Msa1259400:CDS 55.0%
CTTGGATGATTGGGAGGCTG+TGG - chr8_2:61040608-61040627 Msa1259400:CDS 55.0%
GGCTCTATGCTTCTCATCGG+CGG + chr8_2:61040646-61040665 None:intergenic 55.0%
GATTCCAAACCAGGGAGTGG+TGG - chr8_2:61040741-61040760 Msa1259400:CDS 55.0%
! CAAACCAGGGAGTGGTGGAA+CGG - chr8_2:61040746-61040765 Msa1259400:CDS 55.0%
! CCGGTAATGGCAAAGCTTGG+AGG - chr8_2:61040781-61040800 Msa1259400:CDS 55.0%
GGTTGGGTAAAGTCTGAGGG+CGG + chr8_2:61040821-61040840 None:intergenic 55.0%
GGAACCCCTCCTACAAAACG+TGG + chr8_2:61040870-61040889 None:intergenic 55.0%
! GTTTTGTAGGAGGGGTTCCC+TGG - chr8_2:61040871-61040890 Msa1259400:CDS 55.0%
AGCAGGATGCTCGTTGTCCT+GGG - chr8_2:61041018-61041037 Msa1259400:intron 55.0%
TTGCCTCAGAAAGAGGGTCC+AGG + chr8_2:61039766-61039785 None:intergenic 55.0%
GTGTTAGCGGCGGAAGGAAT+CGG + chr8_2:61039960-61039979 None:intergenic 55.0%
!! TTCTTGGTGTTAGCGGCGGA+AGG + chr8_2:61039966-61039985 None:intergenic 55.0%
!! AGGGTTCTTGGTGTTAGCGG+CGG + chr8_2:61039970-61039989 None:intergenic 55.0%
!! GCCAGGGTTCTTGGTGTTAG+CGG + chr8_2:61039973-61039992 None:intergenic 55.0%
CGTTTGCTCTGTTTCCCCAC+TGG + chr8_2:61040309-61040328 None:intergenic 55.0%
AATTGGAGAAAGTGGGGGCG+AGG - chr8_2:61040331-61040350 Msa1259400:CDS 55.0%
CTTGGATGATTGGGAGGCTG+TGG - chr8_2:61040608-61040627 Msa1259400:CDS 55.0%
GGCTCTATGCTTCTCATCGG+CGG + chr8_2:61040646-61040665 None:intergenic 55.0%
GATTCCAAACCAGGGAGTGG+TGG - chr8_2:61040741-61040760 Msa1259400:CDS 55.0%
! CAAACCAGGGAGTGGTGGAA+CGG - chr8_2:61040746-61040765 Msa1259400:CDS 55.0%
! CCGGTAATGGCAAAGCTTGG+AGG - chr8_2:61040781-61040800 Msa1259400:CDS 55.0%
GGTTGGGTAAAGTCTGAGGG+CGG + chr8_2:61040821-61040840 None:intergenic 55.0%
GGAACCCCTCCTACAAAACG+TGG + chr8_2:61040870-61040889 None:intergenic 55.0%
! GTTTTGTAGGAGGGGTTCCC+TGG - chr8_2:61040871-61040890 Msa1259400:CDS 55.0%
AGCAGGATGCTCGTTGTCCT+GGG - chr8_2:61041018-61041037 Msa1259400:intron 55.0%
CCTCAGAAAGAGGGTCCAGG+TGG + chr8_2:61039763-61039782 None:intergenic 60.0%
CCACCTGGACCCTCTTTCTG+AGG - chr8_2:61039760-61039779 Msa1259400:three_prime_UTR 60.0%
CGGAACGGCGGCGATTGAAT+CGG + chr8_2:61039940-61039959 None:intergenic 60.0%
AGCGGCGGAAGGAATCGGAA+CGG + chr8_2:61039955-61039974 None:intergenic 60.0%
GCCGCTAACACCAAGAACCC+TGG - chr8_2:61039969-61039988 Msa1259400:three_prime_UTR 60.0%
TGTTTCCCCACTGGCGACGA+CGG + chr8_2:61040300-61040319 None:intergenic 60.0%
CGTTCCACCACTCCCTGGTT+TGG + chr8_2:61040748-61040767 None:intergenic 60.0%
! GGAGTGGTGGAACGGTTCCT+CGG - chr8_2:61040754-61040773 Msa1259400:CDS 60.0%
! GAGTGGTGGAACGGTTCCTC+GGG - chr8_2:61040755-61040774 Msa1259400:CDS 60.0%
GTTCCTCGGGCATCCGGTAA+TGG - chr8_2:61040768-61040787 Msa1259400:CDS 60.0%
TTGCCATTACCGGATGCCCG+AGG + chr8_2:61040774-61040793 None:intergenic 60.0%
GGCACAGACATGCGAGACCA+GGG + chr8_2:61040891-61040910 None:intergenic 60.0%
TGGCACAGACATGCGAGACC+AGG + chr8_2:61040892-61040911 None:intergenic 60.0%
GAGCAGGATGCTCGTTGTCC+TGG - chr8_2:61041017-61041036 Msa1259400:intron 60.0%
ATGCTCGTTGTCCTGGGTGC+AGG - chr8_2:61041024-61041043 Msa1259400:intron 60.0%
CCTCAGAAAGAGGGTCCAGG+TGG + chr8_2:61039763-61039782 None:intergenic 60.0%
CCACCTGGACCCTCTTTCTG+AGG - chr8_2:61039760-61039779 Msa1259400:three_prime_UTR 60.0%
CGGAACGGCGGCGATTGAAT+CGG + chr8_2:61039940-61039959 None:intergenic 60.0%
AGCGGCGGAAGGAATCGGAA+CGG + chr8_2:61039955-61039974 None:intergenic 60.0%
GCCGCTAACACCAAGAACCC+TGG - chr8_2:61039969-61039988 Msa1259400:three_prime_UTR 60.0%
TGTTTCCCCACTGGCGACGA+CGG + chr8_2:61040300-61040319 None:intergenic 60.0%
CGTTCCACCACTCCCTGGTT+TGG + chr8_2:61040748-61040767 None:intergenic 60.0%
! GGAGTGGTGGAACGGTTCCT+CGG - chr8_2:61040754-61040773 Msa1259400:CDS 60.0%
! GAGTGGTGGAACGGTTCCTC+GGG - chr8_2:61040755-61040774 Msa1259400:CDS 60.0%
GTTCCTCGGGCATCCGGTAA+TGG - chr8_2:61040768-61040787 Msa1259400:CDS 60.0%
TTGCCATTACCGGATGCCCG+AGG + chr8_2:61040774-61040793 None:intergenic 60.0%
GGCACAGACATGCGAGACCA+GGG + chr8_2:61040891-61040910 None:intergenic 60.0%
TGGCACAGACATGCGAGACC+AGG + chr8_2:61040892-61040911 None:intergenic 60.0%
GAGCAGGATGCTCGTTGTCC+TGG - chr8_2:61041017-61041036 Msa1259400:intron 60.0%
ATGCTCGTTGTCCTGGGTGC+AGG - chr8_2:61041024-61041043 Msa1259400:intron 60.0%
GGCGGAAGGAATCGGAACGG+CGG + chr8_2:61039952-61039971 None:intergenic 65.0%
CATGTGCCGTCGTCGCCAGT+GGG - chr8_2:61040291-61040310 Msa1259400:CDS 65.0%
ATGTGCCGTCGTCGCCAGTG+GGG - chr8_2:61040292-61040311 Msa1259400:CDS 65.0%
AAAGTGGGGGCGAGGCGTAG+AGG - chr8_2:61040339-61040358 Msa1259400:CDS 65.0%
GGAACCGTTCCACCACTCCC+TGG + chr8_2:61040753-61040772 None:intergenic 65.0%
GGAACGGTTCCTCGGGCATC+CGG - chr8_2:61040762-61040781 Msa1259400:CDS 65.0%
GGCGGAAGGAATCGGAACGG+CGG + chr8_2:61039952-61039971 None:intergenic 65.0%
CATGTGCCGTCGTCGCCAGT+GGG - chr8_2:61040291-61040310 Msa1259400:CDS 65.0%
ATGTGCCGTCGTCGCCAGTG+GGG - chr8_2:61040292-61040311 Msa1259400:CDS 65.0%
AAAGTGGGGGCGAGGCGTAG+AGG - chr8_2:61040339-61040358 Msa1259400:CDS 65.0%
GGAACCGTTCCACCACTCCC+TGG + chr8_2:61040753-61040772 None:intergenic 65.0%
GGAACGGTTCCTCGGGCATC+CGG - chr8_2:61040762-61040781 Msa1259400:CDS 65.0%
CCACTGGCGACGACGGCACA+TGG + chr8_2:61040293-61040312 None:intergenic 70.0%
CCATGTGCCGTCGTCGCCAG+TGG - chr8_2:61040290-61040309 Msa1259400:CDS 70.0%
GGCGAGGCGTAGAGGTGGAG+AGG - chr8_2:61040347-61040366 Msa1259400:CDS 70.0%
CCACTGGCGACGACGGCACA+TGG + chr8_2:61040293-61040312 None:intergenic 70.0%
CCATGTGCCGTCGTCGCCAG+TGG - chr8_2:61040290-61040309 Msa1259400:CDS 70.0%
GGCGAGGCGTAGAGGTGGAG+AGG - chr8_2:61040347-61040366 Msa1259400:CDS 70.0%
GTGGGGGCGAGGCGTAGAGG+TGG - chr8_2:61040342-61040361 Msa1259400:CDS 75.0%
GTGGGGGCGAGGCGTAGAGG+TGG - chr8_2:61040342-61040361 Msa1259400:CDS 75.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 61039719 61041560 61039719 ID=Msa1259400;Name=Msa1259400
chr8_2 mRNA 61039719 61041560 61039719 ID=Msa1259400-mRNA-1;Parent=Msa1259400;Name=Msa1259400-mRNA-1;_AED=0.02;_eAED=0.02;_QI=211|1|1|1|1|1|3|412|348
chr8_2 exon 61039719 61041035 61039719 ID=Msa1259400-mRNA-1:exon:19194;Parent=Msa1259400-mRNA-1
chr8_2 exon 61041114 61041180 61041114 ID=Msa1259400-mRNA-1:exon:19193;Parent=Msa1259400-mRNA-1
chr8_2 exon 61041275 61041560 61041275 ID=Msa1259400-mRNA-1:exon:19192;Parent=Msa1259400-mRNA-1
chr8_2 five_prime_UTR 61041350 61041560 61041350 ID=Msa1259400-mRNA-1:five_prime_utr;Parent=Msa1259400-mRNA-1
chr8_2 CDS 61041275 61041349 61041275 ID=Msa1259400-mRNA-1:cds;Parent=Msa1259400-mRNA-1
chr8_2 CDS 61041114 61041180 61041114 ID=Msa1259400-mRNA-1:cds;Parent=Msa1259400-mRNA-1
chr8_2 CDS 61040131 61041035 61040131 ID=Msa1259400-mRNA-1:cds;Parent=Msa1259400-mRNA-1
chr8_2 three_prime_UTR 61039719 61040130 61039719 ID=Msa1259400-mRNA-1:three_prime_utr;Parent=Msa1259400-mRNA-1
Gene Sequence

>Msa1259400

ATGGTTTCCGATTCAATCGCCGCCGTTCCGATTCCTTCCGCCGCTAACACCAAGAACCCTGGCAAAAAGAAGAGGACCAATAGGTCCGCGAAATTGAAGCAGTATAAGATTGATGCGCGTCGTGAACAATGGCTATCTCAAGGTGCGGTGAAGAAGAAGGGTTGCAAGGATGGATTGGACGATGATGTCCATGTGCCGTCGTCGCCAGTGGGGAAACAGAGCAAACGTGAATTGGAGAAAGTGGGGGCGAGGCGTAGAGGTGGAGAGGATGATGTGTTGATCCATCAAGACAGTGATTCGGAGTCACCGTCAAACAGTCCTATCAGTCCTAATAGTAGTGTGTTGTGTGGCAATGATTCCGGGACGAATTTCACTGGTAGTAGCAGTGGTGGAAGCAGTAGCAGTAGTAGTTCTAGTAGTGGTGGGTGTTTCTCTGGGAATATTACAGAAGAGGAAGAAGATGATGAAGAAGAAGTAGAACATGAGGAGGAGGATGATGATGGATGCTTGGATGATTGGGAGGCTGTGGCAGATGCTTTAGCCGCCGATGAGAAGCATAGAGCCTCTTCACAGAATGAACCCGTTGCAGAAACGGATTCATCTTGTGAAGTGACTGATGGTTTGAATTTAGGATGTTTGGATTCCAAACCAGGGAGTGGTGGAACGGTTCCTCGGGCATCCGGTAATGGCAAAGCTTGGAGGGCTGATGATGCTTTCCGCCCTCAGACTTTACCCAACCTGTCGAAACAGCATAGTATGCCGAATCCACGTTTTGTAGGAGGGGTTCCCTGGTCTCGCATGTCTGTGCCATCCAATTGTCCAATTTGCTGTGAGGATCTTGATTTAACGGACACAAGTTTTCTTCCGTGCAATTGTGGTTTTCGGCTTTGTCTCTTTTGCCACAAGAGGATTCTTGAGCAGGATGCTCGTTGTCCTGGGTGCAGGAAGCAATATGAGTGTGAACCTATCGAGACAGAAGCAAGTGTGCATGGAGGTAGCCTTACTCTTCGGTTGGCTCGTTCTGTTAGCATGATCGAAAGGTCTTGA

Protein sequence

>Msa1259400

MVSDSIAAVPIPSAANTKNPGKKKRTNRSAKLKQYKIDARREQWLSQGAVKKKGCKDGLDDDVHVPSSPVGKQSKRELEKVGARRRGGEDDVLIHQDSDSESPSNSPISPNSSVLCGNDSGTNFTGSSSGGSSSSSSSSSGGCFSGNITEEEEDDEEEVEHEEEDDDGCLDDWEAVADALAADEKHRASSQNEPVAETDSSCEVTDGLNLGCLDSKPGSGGTVPRASGNGKAWRADDAFRPQTLPNLSKQHSMPNPRFVGGVPWSRMSVPSNCPICCEDLDLTDTSFLPCNCGFRLCLFCHKRILEQDARCPGCRKQYECEPIETEASVHGGSLTLRLARSVSMIERS*