Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1443640 | sp|F4I9E1|NFD4_ARATH | 24.248 | 565 | 391 | 13 | 27 | 584 | 43 | 577 | 1.26e-27 | 120 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1443640 | A0A072VQH4 | 97.000 | 600 | 9 | 2 | 3 | 600 | 2 | 594 | 0.0 | 1174 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001830 | Msa1443640 | 0.812842 | 3.458963e-51 | -8.615850e-47 |
| Msa0006060 | Msa1443640 | 0.807891 | 4.051107e-50 | -8.615850e-47 |
| Msa0026630 | Msa1443640 | 0.805885 | 1.075352e-49 | -8.615850e-47 |
| Msa0059900 | Msa1443640 | 0.803916 | 2.774061e-49 | -8.615850e-47 |
| Msa0061500 | Msa1443640 | 0.818996 | 1.464263e-52 | -8.615850e-47 |
| Msa0090380 | Msa1443640 | 0.912070 | 2.966486e-83 | -8.615850e-47 |
| Msa0104810 | Msa1443640 | 0.800783 | 1.225679e-48 | -8.615850e-47 |
| Msa1355510 | Msa1443640 | 0.862641 | 4.387854e-64 | -8.615850e-47 |
| Msa1364080 | Msa1443640 | 0.827780 | 1.295090e-54 | -8.615850e-47 |
| Msa1413800 | Msa1443640 | 0.813601 | 2.356464e-51 | -8.615850e-47 |
| Msa1433410 | Msa1443640 | 0.915449 | 5.811439e-85 | -8.615850e-47 |
| Msa1435320 | Msa1443640 | 0.826696 | 2.354014e-54 | -8.615850e-47 |
| Msa1436090 | Msa1443640 | 0.814020 | 1.905233e-51 | -8.615850e-47 |
| Msa1443400 | Msa1443640 | 0.827793 | 1.285479e-54 | -8.615850e-47 |
| Msa1443620 | Msa1443640 | 0.880582 | 4.875554e-70 | -8.615850e-47 |
| Msa1443640 | Msa1448040 | 0.827585 | 1.442114e-54 | -8.615850e-47 |
| Msa0609850 | Msa1443640 | 0.801702 | 7.949655e-49 | -8.615850e-47 |
| Msa0615210 | Msa1443640 | 0.810928 | 9.031096e-51 | -8.615850e-47 |
| Msa0631320 | Msa1443640 | 0.826285 | 2.949455e-54 | -8.615850e-47 |
| Msa0641130 | Msa1443640 | 0.833931 | 4.015658e-56 | -8.615850e-47 |
| Msa0649100 | Msa1443640 | 0.804999 | 1.649851e-49 | -8.615850e-47 |
| Msa0650560 | Msa1443640 | 0.803601 | 3.225478e-49 | -8.615850e-47 |
| Msa0653830 | Msa1443640 | 0.825622 | 4.240521e-54 | -8.615850e-47 |
| Msa0669700 | Msa1443640 | 0.826156 | 3.166544e-54 | -8.615850e-47 |
| Msa0679670 | Msa1443640 | 0.824431 | 8.100930e-54 | -8.615850e-47 |
| Msa0744640 | Msa1443640 | 0.801994 | 6.923991e-49 | -8.615850e-47 |
| Msa0769720 | Msa1443640 | 0.802888 | 4.531126e-49 | -8.615850e-47 |
| Msa0804870 | Msa1443640 | 0.808221 | 3.445283e-50 | -8.615850e-47 |
| Msa0812530 | Msa1443640 | 0.824380 | 8.328515e-54 | -8.615850e-47 |
| Msa0841730 | Msa1443640 | 0.802549 | 5.323392e-49 | -8.615850e-47 |
| Msa0137860 | Msa1443640 | 0.910582 | 1.593799e-82 | -8.615850e-47 |
| Msa0138900 | Msa1443640 | 0.820928 | 5.292682e-53 | -8.615850e-47 |
| Msa0152560 | Msa1443640 | 0.824954 | 6.099231e-54 | -8.615850e-47 |
| Msa0176260 | Msa1443640 | 0.815400 | 9.428502e-52 | -8.615850e-47 |
| Msa0180350 | Msa1443640 | 0.805732 | 1.158250e-49 | -8.615850e-47 |
| Msa0187310 | Msa1443640 | 0.869376 | 3.243919e-66 | -8.615850e-47 |
| Msa0189610 | Msa1443640 | 0.830309 | 3.157892e-55 | -8.615850e-47 |
| Msa0190930 | Msa1443640 | 0.802727 | 4.890717e-49 | -8.615850e-47 |
| Msa0196880 | Msa1443640 | 0.819769 | 9.759131e-53 | -8.615850e-47 |
| Msa0224130 | Msa1443640 | 0.833749 | 4.460650e-56 | -8.615850e-47 |
| Msa1225580 | Msa1443640 | 0.874368 | 7.131854e-68 | -8.615850e-47 |
| Msa1231190 | Msa1443640 | 0.802494 | 5.464155e-49 | -8.615850e-47 |
| Msa1231710 | Msa1443640 | 0.823257 | 1.526637e-53 | -8.615850e-47 |
| Msa1236470 | Msa1443640 | 0.817248 | 3.639089e-52 | -8.615850e-47 |
| Msa1246780 | Msa1443640 | 0.800525 | 1.383827e-48 | -8.615850e-47 |
| Msa1246790 | Msa1443640 | 0.818264 | 2.146570e-52 | -8.615850e-47 |
| Msa1256060 | Msa1443640 | 0.823943 | 1.055202e-53 | -8.615850e-47 |
| Msa1260680 | Msa1443640 | 0.814599 | 1.419043e-51 | -8.615850e-47 |
| Msa1266170 | Msa1443640 | 0.816639 | 4.986430e-52 | -8.615850e-47 |
| Msa1270050 | Msa1443640 | 0.802598 | 5.201017e-49 | -8.615850e-47 |
| Msa1274380 | Msa1443640 | 0.802485 | 5.487189e-49 | -8.615850e-47 |
| Msa1284090 | Msa1443640 | 0.808838 | 2.543728e-50 | -8.615850e-47 |
| Msa1286210 | Msa1443640 | 0.812414 | 4.291121e-51 | -8.615850e-47 |
| Msa1312440 | Msa1443640 | 0.857245 | 1.861281e-62 | -8.615850e-47 |
| Msa1316460 | Msa1443640 | 0.801448 | 8.962402e-49 | -8.615850e-47 |
| Msa1334840 | Msa1443640 | 0.845082 | 5.070247e-59 | -8.615850e-47 |
| Msa0364790 | Msa1443640 | 0.808236 | 3.419600e-50 | -8.615850e-47 |
| Msa0365950 | Msa1443640 | 0.808611 | 2.844963e-50 | -8.615850e-47 |
| Msa0376970 | Msa1443640 | 0.801244 | 9.868517e-49 | -8.615850e-47 |
| Msa0388730 | Msa1443640 | 0.800710 | 1.268386e-48 | -8.615850e-47 |
| Msa0413870 | Msa1443640 | 0.810202 | 1.296236e-50 | -8.615850e-47 |
| Msa0425610 | Msa1443640 | 0.819317 | 1.237693e-52 | -8.615850e-47 |
| Msa0996380 | Msa1443640 | 0.819656 | 1.035750e-52 | -8.615850e-47 |
| Msa1008390 | Msa1443640 | 0.814706 | 1.343967e-51 | -8.615850e-47 |
| Msa1015880 | Msa1443640 | 0.821359 | 4.210246e-53 | -8.615850e-47 |
| Msa1016960 | Msa1443640 | 0.826487 | 2.640352e-54 | -8.615850e-47 |
| Msa1023310 | Msa1443640 | 0.830586 | 2.702311e-55 | -8.615850e-47 |
| Msa1058200 | Msa1443640 | 0.820648 | 6.137894e-53 | -8.615850e-47 |
| Msa1059670 | Msa1443640 | 0.831960 | 1.241035e-55 | -8.615850e-47 |
| Msa1062040 | Msa1443640 | 0.814210 | 1.730378e-51 | -8.615850e-47 |
| Msa1069890 | Msa1443640 | 0.829850 | 4.086584e-55 | -8.615850e-47 |
| Msa1089190 | Msa1443640 | 0.824331 | 8.555156e-54 | -8.615850e-47 |
| Msa1098940 | Msa1443640 | 0.826453 | 2.690491e-54 | -8.615850e-47 |
| Msa0264680 | Msa1443640 | 0.862475 | 4.937410e-64 | -8.615850e-47 |
| Msa0265270 | Msa1443640 | 0.831671 | 1.462395e-55 | -8.615850e-47 |
| Msa0276430 | Msa1443640 | 0.840594 | 7.916433e-58 | -8.615850e-47 |
| Msa0302730 | Msa1443640 | 0.879102 | 1.638542e-69 | -8.615850e-47 |
| Msa0306310 | Msa1443640 | 0.813409 | 2.597116e-51 | -8.615850e-47 |
| Msa0311510 | Msa1443640 | 0.805881 | 1.077324e-49 | -8.615850e-47 |
| Msa0316470 | Msa1443640 | 0.833642 | 4.743570e-56 | -8.615850e-47 |
| Msa0319020 | Msa1443640 | 0.816758 | 4.687284e-52 | -8.615850e-47 |
| Msa0319240 | Msa1443640 | 0.838930 | 2.146083e-57 | -8.615850e-47 |
| Msa0319290 | Msa1443640 | 0.801274 | 9.728545e-49 | -8.615850e-47 |
| Msa1107200 | Msa1443640 | 0.847367 | 1.209825e-59 | -8.615850e-47 |
| Msa1119920 | Msa1443640 | 0.821550 | 3.804917e-53 | -8.615850e-47 |
| Msa1131790 | Msa1443640 | 0.803633 | 3.175900e-49 | -8.615850e-47 |
| Msa1150780 | Msa1443640 | 0.844509 | 7.236064e-59 | -8.615850e-47 |
| Msa1180720 | Msa1443640 | 0.813083 | 3.062604e-51 | -8.615850e-47 |
| Msa1181060 | Msa1443640 | 0.830441 | 2.931745e-55 | -8.615850e-47 |
| Msa1208990 | Msa1443640 | 0.801269 | 9.748988e-49 | -8.615850e-47 |
| Msa1218160 | Msa1443640 | 0.817791 | 2.745888e-52 | -8.615850e-47 |
| Msa1220880 | Msa1443640 | 0.818838 | 1.590842e-52 | -8.615850e-47 |
| Msa0484800 | Msa1443640 | 0.862513 | 4.804728e-64 | -8.615850e-47 |
| Msa0516760 | Msa1443640 | 0.800339 | 1.509701e-48 | -8.615850e-47 |
| Msa0534870 | Msa1443640 | 0.822646 | 2.118813e-53 | -8.615850e-47 |
| Msa0545050 | Msa1443640 | 0.837951 | 3.839445e-57 | -8.615850e-47 |
| Msa0584600 | Msa1443640 | 0.803600 | 3.227143e-49 | -8.615850e-47 |
| Msa0590390 | Msa1443640 | 0.815632 | 8.370431e-52 | -8.615850e-47 |
| Msa0600590 | Msa1443640 | 0.852474 | 4.508971e-61 | -8.615850e-47 |
| Msa0863990 | Msa1443640 | 0.833645 | 4.735453e-56 | -8.615850e-47 |
| Msa0870510 | Msa1443640 | 0.805551 | 1.263815e-49 | -8.615850e-47 |
| Msa0874640 | Msa1443640 | 0.825749 | 3.956275e-54 | -8.615850e-47 |
| Msa0922190 | Msa1443640 | 0.814118 | 1.813252e-51 | -8.615850e-47 |
| Msa0945130 | Msa1443640 | 0.931268 | 4.852417e-94 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1443640 | MtrunA17_Chr1g0210274 | 96.833 | 600 | 10 | 2 | 3 | 600 | 2 | 594 | 0.0 | 1173 |
| Msa1443640 | MtrunA17_Chr1g0210284 | 93.813 | 598 | 32 | 1 | 3 | 600 | 2 | 594 | 0.0 | 1129 |
| Msa1443640 | MtrunA17_Chr1g0210291 | 74.359 | 585 | 136 | 3 | 13 | 589 | 11 | 589 | 0.0 | 886 |
| Msa1443640 | MtrunA17_Chr7g0264861 | 63.790 | 591 | 188 | 6 | 17 | 589 | 19 | 601 | 0.0 | 726 |
| Msa1443640 | MtrunA17_Chr1g0171591 | 58.913 | 589 | 232 | 3 | 11 | 589 | 8 | 596 | 0.0 | 713 |
| Msa1443640 | MtrunA17_Chr1g0174101 | 58.042 | 572 | 227 | 3 | 11 | 578 | 8 | 570 | 0.0 | 683 |
| Msa1443640 | MtrunA17_Chr2g0330551 | 33.975 | 571 | 325 | 5 | 21 | 572 | 1 | 538 | 4.28e-107 | 333 |
| Msa1443640 | MtrunA17_Chr7g0225191 | 35.144 | 589 | 327 | 10 | 16 | 562 | 1 | 576 | 5.08e-106 | 331 |
| Msa1443640 | MtrunA17_Chr5g0442481 | 32.973 | 555 | 331 | 8 | 27 | 572 | 11 | 533 | 6.79e-101 | 316 |
| Msa1443640 | MtrunA17_Chr3g0132161 | 34.798 | 569 | 320 | 11 | 22 | 563 | 10 | 554 | 1.31e-99 | 314 |
| Msa1443640 | MtrunA17_Chr4g0037301 | 34.735 | 547 | 320 | 9 | 27 | 563 | 15 | 534 | 1.28e-91 | 293 |
| Msa1443640 | MtrunA17_Chr4g0064981 | 33.333 | 555 | 344 | 8 | 28 | 563 | 12 | 559 | 3.07e-89 | 287 |
| Msa1443640 | MtrunA17_Chr2g0304561 | 31.295 | 556 | 347 | 7 | 28 | 563 | 13 | 553 | 1.67e-82 | 269 |
| Msa1443640 | MtrunA17_Chr5g0405621 | 32.332 | 566 | 333 | 10 | 22 | 578 | 8 | 532 | 6.07e-82 | 267 |
| Msa1443640 | MtrunA17_Chr7g0251871 | 26.132 | 574 | 382 | 16 | 27 | 576 | 7 | 562 | 3.44e-32 | 131 |
| Msa1443640 | MtrunA17_Chr2g0333371 | 31.004 | 229 | 115 | 5 | 335 | 563 | 104 | 289 | 1.15e-29 | 119 |
| Msa1443640 | MtrunA17_Chr5g0408921 | 25.000 | 576 | 392 | 14 | 27 | 575 | 7 | 569 | 5.59e-28 | 118 |
| Msa1443640 | MtrunA17_Chr3g0106801 | 24.417 | 557 | 368 | 12 | 16 | 563 | 1 | 513 | 1.69e-24 | 107 |
| Msa1443640 | MtrunA17_Chr8g0369621 | 23.618 | 597 | 406 | 17 | 13 | 577 | 34 | 612 | 1.33e-20 | 95.9 |
| Msa1443640 | MtrunA17_Chr3g0106821 | 31.361 | 169 | 116 | 0 | 25 | 193 | 5 | 173 | 2.64e-16 | 81.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1443640 | AT2G39210.1 | 72.727 | 561 | 150 | 2 | 14 | 573 | 8 | 566 | 0.0 | 847 |
| Msa1443640 | AT2G28120.1 | 63.604 | 555 | 196 | 1 | 21 | 575 | 11 | 559 | 0.0 | 720 |
| Msa1443640 | AT1G74780.1 | 35.501 | 569 | 315 | 5 | 21 | 573 | 1 | 533 | 3.62e-110 | 341 |
| Msa1443640 | AT1G18940.1 | 36.250 | 560 | 298 | 9 | 19 | 563 | 1 | 516 | 3.87e-108 | 335 |
| Msa1443640 | AT5G50630.1 | 35.390 | 551 | 313 | 9 | 23 | 562 | 12 | 530 | 2.61e-101 | 318 |
| Msa1443640 | AT5G50520.1 | 35.390 | 551 | 313 | 9 | 23 | 562 | 12 | 530 | 2.61e-101 | 318 |
| Msa1443640 | AT5G14120.1 | 34.549 | 576 | 345 | 10 | 21 | 571 | 10 | 578 | 7.74e-100 | 315 |
| Msa1443640 | AT2G34350.1 | 33.216 | 566 | 317 | 8 | 21 | 569 | 1 | 522 | 9.37e-98 | 308 |
| Msa1443640 | AT2G34350.2 | 33.216 | 566 | 317 | 8 | 21 | 569 | 1 | 522 | 9.37e-98 | 308 |
| Msa1443640 | AT2G34355.1 | 34.229 | 558 | 314 | 10 | 24 | 569 | 4 | 520 | 8.76e-97 | 306 |
| Msa1443640 | AT3G01930.2 | 32.823 | 588 | 342 | 9 | 23 | 572 | 12 | 584 | 1.85e-96 | 306 |
| Msa1443640 | AT4G34950.1 | 32.605 | 549 | 343 | 7 | 27 | 562 | 16 | 550 | 3.41e-91 | 292 |
| Msa1443640 | AT2G16660.1 | 34.444 | 540 | 326 | 7 | 27 | 562 | 14 | 529 | 1.75e-89 | 287 |
| Msa1443640 | AT1G80530.1 | 30.741 | 553 | 344 | 10 | 28 | 563 | 14 | 544 | 3.15e-74 | 248 |
| Msa1443640 | AT3G01930.1 | 31.524 | 479 | 289 | 9 | 125 | 572 | 1 | 471 | 3.73e-67 | 226 |
| Msa1443640 | AT2G34355.2 | 32.683 | 410 | 231 | 9 | 164 | 569 | 2 | 370 | 6.49e-60 | 204 |
| Msa1443640 | AT3G01930.3 | 31.925 | 426 | 240 | 7 | 23 | 410 | 12 | 425 | 4.67e-59 | 204 |
| Msa1443640 | AT2G16660.2 | 33.760 | 391 | 240 | 7 | 27 | 413 | 14 | 389 | 3.69e-55 | 192 |
| Msa1443640 | AT3G01630.1 | 25.853 | 557 | 358 | 15 | 27 | 563 | 23 | 544 | 7.11e-32 | 130 |
| Msa1443640 | AT3G01630.2 | 25.853 | 557 | 358 | 15 | 27 | 563 | 41 | 562 | 7.32e-32 | 130 |
| Msa1443640 | AT4G19450.1 | 25.088 | 570 | 376 | 14 | 27 | 563 | 7 | 558 | 1.27e-31 | 130 |
| Msa1443640 | AT5G45275.1 | 25.868 | 576 | 377 | 13 | 27 | 573 | 7 | 561 | 1.50e-30 | 126 |
| Msa1443640 | AT1G31470.1 | 24.248 | 565 | 391 | 13 | 27 | 584 | 43 | 577 | 1.28e-28 | 120 |
| Msa1443640 | AT4G19450.2 | 25.485 | 412 | 264 | 10 | 27 | 406 | 7 | 407 | 7.76e-24 | 104 |
Find 105 sgRNAs with CRISPR-Local
Find 278 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCACCTTTGTAAAACTTTC+TGG | 0.108023 | tig0030488:+31437 | None:intergenic |
| AACACATCTTCCCACCATTT+TGG | 0.178261 | tig0030488:+32137 | None:intergenic |
| TGCTGTTGTTTCACTTATTT+TGG | 0.181515 | tig0030488:-31469 | Msa1443640:CDS |
| TATGCAACTTTATATAATTT+TGG | 0.182353 | tig0030488:-31681 | Msa1443640:CDS |
| GGAATCTCGTGGCGCGGTTT+TGG | 0.197076 | tig0030488:-32654 | Msa1443640:CDS |
| TATATTTCACTTGGTCTTGC+TGG | 0.241800 | tig0030488:-32431 | Msa1443640:CDS |
| TACGTAGCTTCAGTAATAAT+TGG | 0.273011 | tig0030488:-31771 | Msa1443640:CDS |
| TTCCATTGGTGTTCATGGTT+TGG | 0.277479 | tig0030488:-33092 | Msa1443640:CDS |
| GGTGCTATTCTCAATTTCTT+TGG | 0.281836 | tig0030488:-32818 | Msa1443640:CDS |
| AGCAACGTTGGTGTCCTTTC+AGG | 0.282717 | tig0030488:-32884 | Msa1443640:CDS |
| TCCATTGGTGTTCATGGTTT+GGG | 0.288773 | tig0030488:-33091 | Msa1443640:CDS |
| TCTTTGGTTACTTCATGATT+TGG | 0.300114 | tig0030488:-32802 | Msa1443640:CDS |
| GTGACATATACAAGAGATAT+AGG | 0.328395 | tig0030488:-31419 | Msa1443640:CDS |
| AAAGGCTATGTTGGTCTTAG+TGG | 0.334364 | tig0030488:-32623 | Msa1443640:CDS |
| ATGTGTCTTTACATTTGTAT+AGG | 0.337463 | tig0030488:-32737 | Msa1443640:CDS |
| AAAACCGCGCCACGAGATTC+CGG | 0.352220 | tig0030488:+32656 | None:intergenic |
| GTATAATCATTACCTCTTGC+TGG | 0.354254 | tig0030488:+32107 | None:intergenic |
| GTAAGCATTTGGAATTATCT+AGG | 0.357538 | tig0030488:-31930 | Msa1443640:CDS |
| TTAACGGCAATTGATAATCT+TGG | 0.358953 | tig0030488:-32011 | Msa1443640:CDS |
| ACCACCGTCCGGTGATGAAT+TGG | 0.362421 | tig0030488:+33047 | None:intergenic |
| CTTGGAAAGCAAAGAATAGA+AGG | 0.371411 | tig0030488:-31567 | Msa1443640:CDS |
| AAATAGCAAGACCACAAGTT+TGG | 0.379762 | tig0030488:-32763 | Msa1443640:CDS |
| GGTAATTCCATTGGTGTTCA+TGG | 0.380117 | tig0030488:-33097 | Msa1443640:CDS |
| CTATTTGTGGCATGTATTTG+TGG | 0.387438 | tig0030488:-32047 | Msa1443640:CDS |
| TGGTCTTGCTGGATTCTTGT+TGG | 0.395905 | tig0030488:-32420 | Msa1443640:CDS |
| AAACCGCGCCACGAGATTCC+GGG | 0.401261 | tig0030488:+32657 | None:intergenic |
| TTGTGTCTTTAGTAAGCATT+TGG | 0.401481 | tig0030488:-31941 | Msa1443640:CDS |
| TAAGGAGGTTTAGTGTGCTT+TGG | 0.411770 | tig0030488:+32927 | None:intergenic |
| GTGGCATGTATTTGTGGTGT+TGG | 0.412454 | tig0030488:-32041 | Msa1443640:CDS |
| AGATATGTTGATACTATTTG+TGG | 0.416529 | tig0030488:-32060 | Msa1443640:CDS |
| CAAAGAAGCAAAGAAGCAAT+TGG | 0.418174 | tig0030488:-31595 | Msa1443640:CDS |
| AGTTCATTAACTTGTCGAAC+AGG | 0.419859 | tig0030488:+32476 | None:intergenic |
| ATATAGGGAAGAAGCTGAAA+TGG | 0.422458 | tig0030488:-31403 | Msa1443640:CDS |
| AGAGTTAAAGTAAGCATAAG+AGG | 0.426460 | tig0030488:+31849 | None:intergenic |
| TCATTGAAGAGAACAAGATT+TGG | 0.435135 | tig0030488:-32295 | Msa1443640:CDS |
| TTCGACAAGTTAATGAACTT+AGG | 0.451619 | tig0030488:-32472 | Msa1443640:CDS |
| AACTCTCTTTGTCTCATGTG+TGG | 0.452502 | tig0030488:-31832 | Msa1443640:CDS |
| TATGATCATAATTCAGAAGA+AGG | 0.453739 | tig0030488:-32396 | Msa1443640:CDS |
| TGTTGAACTGAGGTTGTTGT+TGG | 0.458257 | tig0030488:+32196 | None:intergenic |
| TCGACAAGTTAATGAACTTA+GGG | 0.459267 | tig0030488:-32471 | Msa1443640:CDS |
| TGGTGTTGGTGGAACTTTAA+CGG | 0.460287 | tig0030488:-32027 | Msa1443640:CDS |
| ACTCTCTTTGTCTCATGTGT+GGG | 0.462025 | tig0030488:-31831 | Msa1443640:CDS |
| GGAATTCTTAAAGGCTATGT+TGG | 0.464341 | tig0030488:-32632 | Msa1443640:CDS |
| ATTGATAATCTTGGTCAGAT+AGG | 0.465696 | tig0030488:-32002 | Msa1443640:CDS |
| ACCGAACATGTAGGTGGCTC+CGG | 0.476564 | tig0030488:+32988 | None:intergenic |
| CCTTCTGTTACTATTTGCAC+TGG | 0.477008 | tig0030488:+32239 | None:intergenic |
| TGACATATACAAGAGATATA+GGG | 0.477639 | tig0030488:-31418 | Msa1443640:CDS |
| GCCGGAGCCACCTACATGTT+CGG | 0.490142 | tig0030488:-32989 | Msa1443640:CDS |
| GGAAGTGTAGCAAGTCCACT+TGG | 0.498928 | tig0030488:-31660 | Msa1443640:CDS |
| TACTTGTGTTAAGAATTTCC+CGG | 0.506545 | tig0030488:-32675 | Msa1443640:CDS |
| GCATGTATTTGTGGTGTTGG+TGG | 0.506795 | tig0030488:-32038 | Msa1443640:CDS |
| AAAGCAAAGGAAATAGCAGC+AGG | 0.514488 | tig0030488:+32524 | None:intergenic |
| AATTTCTTGTATATTTCACT+TGG | 0.520204 | tig0030488:-32440 | Msa1443640:CDS |
| GGCGGCTGCCATGATTAGAA+AGG | 0.534798 | tig0030488:+33009 | None:intergenic |
| ACAGAAGAAGATGACAAAGT+TGG | 0.536104 | tig0030488:-31357 | Msa1443640:CDS |
| GTTACTATTTGCACTGGTGA+AGG | 0.536206 | tig0030488:+32245 | None:intergenic |
| AAGAAGCAATTGGAAGCACT+TGG | 0.537705 | tig0030488:-31585 | Msa1443640:CDS |
| AACAGGTTTCATATATCGAA+TGG | 0.538846 | tig0030488:+32493 | None:intergenic |
| AAGAATTTCCCGGAATCTCG+TGG | 0.541146 | tig0030488:-32665 | Msa1443640:CDS |
| TAGGGAAGAAGCTGAAATGG+TGG | 0.542633 | tig0030488:-31400 | Msa1443640:CDS |
| TTTCTAATCATGGCAGCCGC+CGG | 0.562727 | tig0030488:-33007 | Msa1443640:CDS |
| AAAGCAAAGAATAGAAGGGC+AGG | 0.570654 | tig0030488:-31562 | Msa1443640:CDS |
| TAATCATTACCTCTTGCTGG+TGG | 0.575464 | tig0030488:+32110 | None:intergenic |
| GGGCAGGAATTGAATTGTGT+TGG | 0.581328 | tig0030488:-31546 | Msa1443640:CDS |
| TCAATGAAAACAACGGCAAG+TGG | 0.581784 | tig0030488:+32311 | None:intergenic |
| GTTCGTTGATTAGTCCTGAA+AGG | 0.581835 | tig0030488:+32870 | None:intergenic |
| AACACCAATGGAATTACCTA+CGG | 0.584500 | tig0030488:+33102 | None:intergenic |
| TCCCAAACCATGAACACCAA+TGG | 0.584749 | tig0030488:+33090 | None:intergenic |
| GAAGCTACGTAGAGACCCTC+AGG | 0.585366 | tig0030488:+31783 | None:intergenic |
| AGACACATTTGCCAAACTTG+TGG | 0.585563 | tig0030488:+32752 | None:intergenic |
| AAAGACTTTGGTAGCAACGT+TGG | 0.591191 | tig0030488:-32896 | Msa1443640:CDS |
| AAAGTAAGCATAAGAGGACG+AGG | 0.591288 | tig0030488:+31855 | None:intergenic |
| GTATGGTTTAAGTGCTGCTG+TGG | 0.591609 | tig0030488:-32354 | Msa1443640:CDS |
| GTGCTTAATGTGAAGATCGC+TGG | 0.592619 | tig0030488:-31630 | Msa1443640:CDS |
| GGAAGAAGCTGAAATGGTGG+AGG | 0.594474 | tig0030488:-31397 | Msa1443640:CDS |
| GATAGCATTTGATGTGCCTG+AGG | 0.605002 | tig0030488:-31799 | Msa1443640:CDS |
| ATAGCATTTGATGTGCCTGA+GGG | 0.610223 | tig0030488:-31798 | Msa1443640:CDS |
| GGAGTATAGACCGAACATGT+AGG | 0.618153 | tig0030488:+32979 | None:intergenic |
| GTTCTCTTCAATGAAAACAA+CGG | 0.618801 | tig0030488:+32304 | None:intergenic |
| AATGGTTCGAAGAAAAGCAA+AGG | 0.619783 | tig0030488:+32511 | None:intergenic |
| GTGTTCAATCCACCAGCAAG+AGG | 0.623056 | tig0030488:-32119 | Msa1443640:CDS |
| GCACATCAAATGCTATCAGA+AGG | 0.624152 | tig0030488:+31805 | None:intergenic |
| CCTATTGTCAAAACTACCCA+TGG | 0.627938 | tig0030488:+32839 | None:intergenic |
| GAAGTGTAGCAAGTCCACTT+GGG | 0.630096 | tig0030488:-31659 | Msa1443640:CDS |
| GCGGCCGTAGGTAATTCCAT+TGG | 0.630516 | tig0030488:-33106 | Msa1443640:CDS |
| GGCTGCCATGATTAGAAAGG+AGG | 0.630867 | tig0030488:+33012 | None:intergenic |
| CAACGAACTCTATCCACCAT+GGG | 0.634367 | tig0030488:-32855 | Msa1443640:CDS |
| CCAGTGCAAATAGTAACAGA+AGG | 0.634763 | tig0030488:-32239 | Msa1443640:CDS |
| ATGGTGGAGGTAAAGAACGA+GGG | 0.640025 | tig0030488:-31384 | Msa1443640:CDS |
| CAGCAGAGGTTGTTGAACTG+AGG | 0.642991 | tig0030488:+32186 | None:intergenic |
| TCAACGAACTCTATCCACCA+TGG | 0.645821 | tig0030488:-32856 | Msa1443640:CDS |
| TTGGAAAGCAAAGAATAGAA+GGG | 0.645826 | tig0030488:-31566 | Msa1443640:CDS |
| CTCACCGTCCAATTCATCAC+CGG | 0.647057 | tig0030488:-33055 | Msa1443640:CDS |
| TTTCCCGGAATCTCGTGGCG+CGG | 0.648437 | tig0030488:-32660 | Msa1443640:CDS |
| GAACATGTAGGTGGCTCCGG+CGG | 0.649974 | tig0030488:+32991 | None:intergenic |
| ATTGTCAAAACTACCCATGG+TGG | 0.655386 | tig0030488:+32842 | None:intergenic |
| TTAAGCACATATAACCCAAG+TGG | 0.655955 | tig0030488:+31645 | None:intergenic |
| TATTTACTATGATGACACAA+AGG | 0.659190 | tig0030488:-32573 | Msa1443640:CDS |
| GACTGAAACTGAAACAGCAG+AGG | 0.678973 | tig0030488:+32172 | None:intergenic |
| CCGTCCGGTGATGAATTGGA+CGG | 0.681338 | tig0030488:+33051 | None:intergenic |
| CACAAAACTATGGCGGCCGT+AGG | 0.686030 | tig0030488:-33118 | None:intergenic |
| CCGTCCAATTCATCACCGGA+CGG | 0.687213 | tig0030488:-33051 | Msa1443640:CDS |
| GTATAGACCGAACATGTAGG+TGG | 0.689369 | tig0030488:+32982 | None:intergenic |
| TCCAATTCATCACCGGACGG+TGG | 0.690622 | tig0030488:-33048 | Msa1443640:CDS |
| AATGGTGGAGGTAAAGAACG+AGG | 0.714318 | tig0030488:-31385 | Msa1443640:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATGCAACTTTATATAATTT+TGG | - | tig0030488:32757-32776 | Msa1443640:CDS | 15.0% |
| !!! | TATGCAACTTTATATAATTT+TGG | - | tig0030488:32757-32776 | Msa1443640:CDS | 15.0% |
| !! | AATTTCTTGTATATTTCACT+TGG | - | tig0030488:31998-32017 | Msa1443640:CDS | 20.0% |
| !!! | GTAATAATTGGATTTTGTTT+TGG | - | tig0030488:32679-32698 | Msa1443640:CDS | 20.0% |
| !! | AATTTCTTGTATATTTCACT+TGG | - | tig0030488:31998-32017 | Msa1443640:CDS | 20.0% |
| !!! | GTAATAATTGGATTTTGTTT+TGG | - | tig0030488:32679-32698 | Msa1443640:CDS | 20.0% |
| !! | CAAAGTCTTTGAAAAAACTA+AGG | + | tig0030488:31532-31551 | None:intergenic | 25.0% |
| !!! | CTTAGTTTTTTCAAAGACTT+TGG | - | tig0030488:31530-31549 | Msa1443640:CDS | 25.0% |
| ! | ATGTGTCTTTACATTTGTAT+AGG | - | tig0030488:31701-31720 | Msa1443640:CDS | 25.0% |
| ! | TATTTACTATGATGACACAA+AGG | - | tig0030488:31865-31884 | Msa1443640:CDS | 25.0% |
| !!! | AAGGCTTTGATTTTGTTTAT+AGG | - | tig0030488:31884-31903 | Msa1443640:CDS | 25.0% |
| !!! | CTTTGATTTTGTTTATAGGT+TGG | - | tig0030488:31888-31907 | Msa1443640:CDS | 25.0% |
| ! | TATGATCATAATTCAGAAGA+AGG | - | tig0030488:32042-32061 | Msa1443640:CDS | 25.0% |
| !! | ACCATTTTGGATCTTTTTTT+GGG | + | tig0030488:32291-32310 | None:intergenic | 25.0% |
| ! | AAAAAAAGATCCAAAATGGT+GGG | - | tig0030488:32291-32310 | Msa1443640:CDS | 25.0% |
| ! | AGATATGTTGATACTATTTG+TGG | - | tig0030488:32378-32397 | Msa1443640:CDS | 25.0% |
| ! | GATATAATGGCAAAAAGTAA+TGG | + | tig0030488:32715-32734 | None:intergenic | 25.0% |
| !! | CCATTATATCAGAACTTTTT+GGG | - | tig0030488:32725-32744 | Msa1443640:CDS | 25.0% |
| ! | TGACATATACAAGAGATATA+GGG | - | tig0030488:33020-33039 | Msa1443640:CDS | 25.0% |
| !! | CAAAGTCTTTGAAAAAACTA+AGG | + | tig0030488:31532-31551 | None:intergenic | 25.0% |
| !!! | CTTAGTTTTTTCAAAGACTT+TGG | - | tig0030488:31530-31549 | Msa1443640:CDS | 25.0% |
| ! | ATGTGTCTTTACATTTGTAT+AGG | - | tig0030488:31701-31720 | Msa1443640:CDS | 25.0% |
| ! | TATTTACTATGATGACACAA+AGG | - | tig0030488:31865-31884 | Msa1443640:CDS | 25.0% |
| !!! | AAGGCTTTGATTTTGTTTAT+AGG | - | tig0030488:31884-31903 | Msa1443640:CDS | 25.0% |
| !!! | CTTTGATTTTGTTTATAGGT+TGG | - | tig0030488:31888-31907 | Msa1443640:CDS | 25.0% |
| ! | TATGATCATAATTCAGAAGA+AGG | - | tig0030488:32042-32061 | Msa1443640:CDS | 25.0% |
| !! | ACCATTTTGGATCTTTTTTT+GGG | + | tig0030488:32291-32310 | None:intergenic | 25.0% |
| ! | AAAAAAAGATCCAAAATGGT+GGG | - | tig0030488:32291-32310 | Msa1443640:CDS | 25.0% |
| ! | AGATATGTTGATACTATTTG+TGG | - | tig0030488:32378-32397 | Msa1443640:CDS | 25.0% |
| ! | GATATAATGGCAAAAAGTAA+TGG | + | tig0030488:32715-32734 | None:intergenic | 25.0% |
| !! | CCATTATATCAGAACTTTTT+GGG | - | tig0030488:32725-32744 | Msa1443640:CDS | 25.0% |
| ! | TGACATATACAAGAGATATA+GGG | - | tig0030488:33020-33039 | Msa1443640:CDS | 25.0% |
| !!! | AAGTGTTGTTTTTATGTCTG+GGG | + | tig0030488:31483-31502 | None:intergenic | 30.0% |
| !!! | CAAGTGTTGTTTTTATGTCT+GGG | + | tig0030488:31484-31503 | None:intergenic | 30.0% |
| ! | AGTCTTTGAAAAAACTAAGG+AGG | + | tig0030488:31529-31548 | None:intergenic | 30.0% |
| TCTTTGGTTACTTCATGATT+TGG | - | tig0030488:31636-31655 | Msa1443640:CDS | 30.0% | |
| !!! | TTGTGGTCTTGCTATTTTTT+TGG | + | tig0030488:31672-31691 | None:intergenic | 30.0% |
| TACTTGTGTTAAGAATTTCC+CGG | - | tig0030488:31763-31782 | Msa1443640:CDS | 30.0% | |
| AACAGGTTTCATATATCGAA+TGG | + | tig0030488:31948-31967 | None:intergenic | 30.0% | |
| TTCGACAAGTTAATGAACTT+AGG | - | tig0030488:31966-31985 | Msa1443640:CDS | 30.0% | |
| TCGACAAGTTAATGAACTTA+GGG | - | tig0030488:31967-31986 | Msa1443640:CDS | 30.0% | |
| GTTCTCTTCAATGAAAACAA+CGG | + | tig0030488:32137-32156 | None:intergenic | 30.0% | |
| TCATTGAAGAGAACAAGATT+TGG | - | tig0030488:32143-32162 | Msa1443640:CDS | 30.0% | |
| TCCCAAAAAAAGATCCAAAA+TGG | - | tig0030488:32287-32306 | Msa1443640:CDS | 30.0% | |
| ! | CACCATTTTGGATCTTTTTT+TGG | + | tig0030488:32292-32311 | None:intergenic | 30.0% |
| CAAAAAAAGATCCAAAATGG+TGG | - | tig0030488:32290-32309 | Msa1443640:CDS | 30.0% | |
| ! | TTAACGGCAATTGATAATCT+TGG | - | tig0030488:32427-32446 | Msa1443640:CDS | 30.0% |
| ! | ATTGATAATCTTGGTCAGAT+AGG | - | tig0030488:32436-32455 | Msa1443640:CDS | 30.0% |
| !! | AAAGTGCTTATGCTTTTCTT+TGG | + | tig0030488:32478-32497 | None:intergenic | 30.0% |
| TTGTGTCTTTAGTAAGCATT+TGG | - | tig0030488:32497-32516 | Msa1443640:CDS | 30.0% | |
| ! | GTAAGCATTTGGAATTATCT+AGG | - | tig0030488:32508-32527 | Msa1443640:CDS | 30.0% |
| AGAGTTAAAGTAAGCATAAG+AGG | + | tig0030488:32592-32611 | None:intergenic | 30.0% | |
| TACGTAGCTTCAGTAATAAT+TGG | - | tig0030488:32667-32686 | Msa1443640:CDS | 30.0% | |
| ! | GCCATTATATCAGAACTTTT+TGG | - | tig0030488:32724-32743 | Msa1443640:CDS | 30.0% |
| ! | CCCAAAAAGTTCTGATATAA+TGG | + | tig0030488:32728-32747 | None:intergenic | 30.0% |
| TTGGAAAGCAAAGAATAGAA+GGG | - | tig0030488:32872-32891 | Msa1443640:CDS | 30.0% | |
| !!! | ATTACAGCTGCAACATTTTT+TGG | - | tig0030488:32946-32965 | Msa1443640:CDS | 30.0% |
| !!! | TGCTGTTGTTTCACTTATTT+TGG | - | tig0030488:32969-32988 | Msa1443640:CDS | 30.0% |
| !!! | TGTTGTTTCACTTATTTTGG+TGG | - | tig0030488:32972-32991 | Msa1443640:CDS | 30.0% |
| GTGACATATACAAGAGATAT+AGG | - | tig0030488:33019-33038 | Msa1443640:CDS | 30.0% | |
| !!! | AAGTGTTGTTTTTATGTCTG+GGG | + | tig0030488:31483-31502 | None:intergenic | 30.0% |
| !!! | CAAGTGTTGTTTTTATGTCT+GGG | + | tig0030488:31484-31503 | None:intergenic | 30.0% |
| ! | AGTCTTTGAAAAAACTAAGG+AGG | + | tig0030488:31529-31548 | None:intergenic | 30.0% |
| TCTTTGGTTACTTCATGATT+TGG | - | tig0030488:31636-31655 | Msa1443640:CDS | 30.0% | |
| !!! | TTGTGGTCTTGCTATTTTTT+TGG | + | tig0030488:31672-31691 | None:intergenic | 30.0% |
| TACTTGTGTTAAGAATTTCC+CGG | - | tig0030488:31763-31782 | Msa1443640:CDS | 30.0% | |
| AACAGGTTTCATATATCGAA+TGG | + | tig0030488:31948-31967 | None:intergenic | 30.0% | |
| TTCGACAAGTTAATGAACTT+AGG | - | tig0030488:31966-31985 | Msa1443640:CDS | 30.0% | |
| TCGACAAGTTAATGAACTTA+GGG | - | tig0030488:31967-31986 | Msa1443640:CDS | 30.0% | |
| GTTCTCTTCAATGAAAACAA+CGG | + | tig0030488:32137-32156 | None:intergenic | 30.0% | |
| TCATTGAAGAGAACAAGATT+TGG | - | tig0030488:32143-32162 | Msa1443640:CDS | 30.0% | |
| TCCCAAAAAAAGATCCAAAA+TGG | - | tig0030488:32287-32306 | Msa1443640:CDS | 30.0% | |
| ! | CACCATTTTGGATCTTTTTT+TGG | + | tig0030488:32292-32311 | None:intergenic | 30.0% |
| CAAAAAAAGATCCAAAATGG+TGG | - | tig0030488:32290-32309 | Msa1443640:CDS | 30.0% | |
| ! | TTAACGGCAATTGATAATCT+TGG | - | tig0030488:32427-32446 | Msa1443640:CDS | 30.0% |
| ! | ATTGATAATCTTGGTCAGAT+AGG | - | tig0030488:32436-32455 | Msa1443640:CDS | 30.0% |
| !! | AAAGTGCTTATGCTTTTCTT+TGG | + | tig0030488:32478-32497 | None:intergenic | 30.0% |
| TTGTGTCTTTAGTAAGCATT+TGG | - | tig0030488:32497-32516 | Msa1443640:CDS | 30.0% | |
| ! | GTAAGCATTTGGAATTATCT+AGG | - | tig0030488:32508-32527 | Msa1443640:CDS | 30.0% |
| AGAGTTAAAGTAAGCATAAG+AGG | + | tig0030488:32592-32611 | None:intergenic | 30.0% | |
| TACGTAGCTTCAGTAATAAT+TGG | - | tig0030488:32667-32686 | Msa1443640:CDS | 30.0% | |
| ! | GCCATTATATCAGAACTTTT+TGG | - | tig0030488:32724-32743 | Msa1443640:CDS | 30.0% |
| ! | CCCAAAAAGTTCTGATATAA+TGG | + | tig0030488:32728-32747 | None:intergenic | 30.0% |
| TTGGAAAGCAAAGAATAGAA+GGG | - | tig0030488:32872-32891 | Msa1443640:CDS | 30.0% | |
| !!! | ATTACAGCTGCAACATTTTT+TGG | - | tig0030488:32946-32965 | Msa1443640:CDS | 30.0% |
| !!! | TGCTGTTGTTTCACTTATTT+TGG | - | tig0030488:32969-32988 | Msa1443640:CDS | 30.0% |
| !!! | TGTTGTTTCACTTATTTTGG+TGG | - | tig0030488:32972-32991 | Msa1443640:CDS | 30.0% |
| GTGACATATACAAGAGATAT+AGG | - | tig0030488:33019-33038 | Msa1443640:CDS | 30.0% | |
| AACACCAATGGAATTACCTA+CGG | + | tig0030488:31339-31358 | None:intergenic | 35.0% | |
| ! | TTTTGCCTCCTTTCTAATCA+TGG | - | tig0030488:31421-31440 | Msa1443640:CDS | 35.0% |
| !!! | CCAAGTGTTGTTTTTATGTC+TGG | + | tig0030488:31485-31504 | None:intergenic | 35.0% |
| CCAGACATAAAAACAACACT+TGG | - | tig0030488:31482-31501 | Msa1443640:CDS | 35.0% | |
| !! | GGTGCTATTCTCAATTTCTT+TGG | - | tig0030488:31620-31639 | Msa1443640:CDS | 35.0% |
| AAATAGCAAGACCACAAGTT+TGG | - | tig0030488:31675-31694 | Msa1443640:CDS | 35.0% | |
| GGAATTCTTAAAGGCTATGT+TGG | - | tig0030488:31806-31825 | Msa1443640:CDS | 35.0% | |
| AATGGTTCGAAGAAAAGCAA+AGG | + | tig0030488:31930-31949 | None:intergenic | 35.0% | |
| !! | AGTTCATTAACTTGTCGAAC+AGG | + | tig0030488:31965-31984 | None:intergenic | 35.0% |
| !! | TATATTTCACTTGGTCTTGC+TGG | - | tig0030488:32007-32026 | Msa1443640:CDS | 35.0% |
| ! | AGTTTTTCACAGAGTGAGTA+TGG | - | tig0030488:32067-32086 | Msa1443640:CDS | 35.0% |
| ! | GCAGAGTAAAAAACTTGCTT+TGG | - | tig0030488:32165-32184 | Msa1443640:CDS | 35.0% |
| GTATAATCATTACCTCTTGC+TGG | + | tig0030488:32334-32353 | None:intergenic | 35.0% | |
| CTATTTGTGGCATGTATTTG+TGG | - | tig0030488:32391-32410 | Msa1443640:CDS | 35.0% | |
| !!! | GATTTTGTTTTGGTGCTCAA+TGG | - | tig0030488:32689-32708 | Msa1443640:CDS | 35.0% |
| TTAAGCACATATAACCCAAG+TGG | + | tig0030488:32796-32815 | None:intergenic | 35.0% | |
| CAAAGAAGCAAAGAAGCAAT+TGG | - | tig0030488:32843-32862 | Msa1443640:CDS | 35.0% | |
| CTTGGAAAGCAAAGAATAGA+AGG | - | tig0030488:32871-32890 | Msa1443640:CDS | 35.0% | |
| !!! | TTTCACTTATTTTGGTGGCT+AGG | - | tig0030488:32977-32996 | Msa1443640:CDS | 35.0% |
| ! | AGGACCAGAAAGTTTTACAA+AGG | - | tig0030488:32997-33016 | Msa1443640:CDS | 35.0% |
| GTCACCTTTGTAAAACTTTC+TGG | + | tig0030488:33004-33023 | None:intergenic | 35.0% | |
| ATATAGGGAAGAAGCTGAAA+TGG | - | tig0030488:33035-33054 | Msa1443640:CDS | 35.0% | |
| ACAGAAGAAGATGACAAAGT+TGG | - | tig0030488:33081-33100 | Msa1443640:CDS | 35.0% | |
| AACACCAATGGAATTACCTA+CGG | + | tig0030488:31339-31358 | None:intergenic | 35.0% | |
| ! | TTTTGCCTCCTTTCTAATCA+TGG | - | tig0030488:31421-31440 | Msa1443640:CDS | 35.0% |
| !!! | CCAAGTGTTGTTTTTATGTC+TGG | + | tig0030488:31485-31504 | None:intergenic | 35.0% |
| CCAGACATAAAAACAACACT+TGG | - | tig0030488:31482-31501 | Msa1443640:CDS | 35.0% | |
| !! | GGTGCTATTCTCAATTTCTT+TGG | - | tig0030488:31620-31639 | Msa1443640:CDS | 35.0% |
| AAATAGCAAGACCACAAGTT+TGG | - | tig0030488:31675-31694 | Msa1443640:CDS | 35.0% | |
| GGAATTCTTAAAGGCTATGT+TGG | - | tig0030488:31806-31825 | Msa1443640:CDS | 35.0% | |
| AATGGTTCGAAGAAAAGCAA+AGG | + | tig0030488:31930-31949 | None:intergenic | 35.0% | |
| !! | AGTTCATTAACTTGTCGAAC+AGG | + | tig0030488:31965-31984 | None:intergenic | 35.0% |
| !! | TATATTTCACTTGGTCTTGC+TGG | - | tig0030488:32007-32026 | Msa1443640:CDS | 35.0% |
| ! | AGTTTTTCACAGAGTGAGTA+TGG | - | tig0030488:32067-32086 | Msa1443640:CDS | 35.0% |
| ! | GCAGAGTAAAAAACTTGCTT+TGG | - | tig0030488:32165-32184 | Msa1443640:CDS | 35.0% |
| GTATAATCATTACCTCTTGC+TGG | + | tig0030488:32334-32353 | None:intergenic | 35.0% | |
| CTATTTGTGGCATGTATTTG+TGG | - | tig0030488:32391-32410 | Msa1443640:CDS | 35.0% | |
| !!! | GATTTTGTTTTGGTGCTCAA+TGG | - | tig0030488:32689-32708 | Msa1443640:CDS | 35.0% |
| TTAAGCACATATAACCCAAG+TGG | + | tig0030488:32796-32815 | None:intergenic | 35.0% | |
| CAAAGAAGCAAAGAAGCAAT+TGG | - | tig0030488:32843-32862 | Msa1443640:CDS | 35.0% | |
| CTTGGAAAGCAAAGAATAGA+AGG | - | tig0030488:32871-32890 | Msa1443640:CDS | 35.0% | |
| !!! | TTTCACTTATTTTGGTGGCT+AGG | - | tig0030488:32977-32996 | Msa1443640:CDS | 35.0% |
| ! | AGGACCAGAAAGTTTTACAA+AGG | - | tig0030488:32997-33016 | Msa1443640:CDS | 35.0% |
| GTCACCTTTGTAAAACTTTC+TGG | + | tig0030488:33004-33023 | None:intergenic | 35.0% | |
| ATATAGGGAAGAAGCTGAAA+TGG | - | tig0030488:33035-33054 | Msa1443640:CDS | 35.0% | |
| ACAGAAGAAGATGACAAAGT+TGG | - | tig0030488:33081-33100 | Msa1443640:CDS | 35.0% | |
| ! | GGTAATTCCATTGGTGTTCA+TGG | - | tig0030488:31341-31360 | Msa1443640:CDS | 40.0% |
| ! | TTCCATTGGTGTTCATGGTT+TGG | - | tig0030488:31346-31365 | Msa1443640:CDS | 40.0% |
| ! | TCCATTGGTGTTCATGGTTT+GGG | - | tig0030488:31347-31366 | Msa1443640:CDS | 40.0% |
| TAAGGAGGTTTAGTGTGCTT+TGG | + | tig0030488:31514-31533 | None:intergenic | 40.0% | |
| ! | AAAGACTTTGGTAGCAACGT+TGG | - | tig0030488:31542-31561 | Msa1443640:CDS | 40.0% |
| ! | GTTCGTTGATTAGTCCTGAA+AGG | + | tig0030488:31571-31590 | None:intergenic | 40.0% |
| ATTGTCAAAACTACCCATGG+TGG | + | tig0030488:31599-31618 | None:intergenic | 40.0% | |
| CCTATTGTCAAAACTACCCA+TGG | + | tig0030488:31602-31621 | None:intergenic | 40.0% | |
| !!! | CCATGGGTAGTTTTGACAAT+AGG | - | tig0030488:31599-31618 | Msa1443640:CDS | 40.0% |
| AGACACATTTGCCAAACTTG+TGG | + | tig0030488:31689-31708 | None:intergenic | 40.0% | |
| ! | TCTCAGTCTTTTGCAAACAC+TGG | - | tig0030488:31731-31750 | Msa1443640:CDS | 40.0% |
| !!! | GCGGTTTTGGGAATTCTTAA+AGG | - | tig0030488:31797-31816 | Msa1443640:CDS | 40.0% |
| !! | AAAGGCTATGTTGGTCTTAG+TGG | - | tig0030488:31815-31834 | Msa1443640:CDS | 40.0% |
| AAAGCAAAGGAAATAGCAGC+AGG | + | tig0030488:31917-31936 | None:intergenic | 40.0% | |
| TCAATGAAAACAACGGCAAG+TGG | + | tig0030488:32130-32149 | None:intergenic | 40.0% | |
| ! | GTTACTATTTGCACTGGTGA+AGG | + | tig0030488:32196-32215 | None:intergenic | 40.0% |
| CCTTCTGTTACTATTTGCAC+TGG | + | tig0030488:32202-32221 | None:intergenic | 40.0% | |
| CCAGTGCAAATAGTAACAGA+AGG | - | tig0030488:32199-32218 | Msa1443640:CDS | 40.0% | |
| TGTTGAACTGAGGTTGTTGT+TGG | + | tig0030488:32245-32264 | None:intergenic | 40.0% | |
| ! | AACACATCTTCCCACCATTT+TGG | + | tig0030488:32304-32323 | None:intergenic | 40.0% |
| TAATCATTACCTCTTGCTGG+TGG | + | tig0030488:32331-32350 | None:intergenic | 40.0% | |
| !! | TGGTGTTGGTGGAACTTTAA+CGG | - | tig0030488:32411-32430 | Msa1443640:CDS | 40.0% |
| !! | TATCTAGGACGTGTTTTCTC+AGG | - | tig0030488:32523-32542 | Msa1443640:CDS | 40.0% |
| AAAGTAAGCATAAGAGGACG+AGG | + | tig0030488:32586-32605 | None:intergenic | 40.0% | |
| AACTCTCTTTGTCTCATGTG+TGG | - | tig0030488:32606-32625 | Msa1443640:CDS | 40.0% | |
| ACTCTCTTTGTCTCATGTGT+GGG | - | tig0030488:32607-32626 | Msa1443640:CDS | 40.0% | |
| GCACATCAAATGCTATCAGA+AGG | + | tig0030488:32636-32655 | None:intergenic | 40.0% | |
| ATAGCATTTGATGTGCCTGA+GGG | - | tig0030488:32640-32659 | Msa1443640:CDS | 40.0% | |
| !! | AAGAAGCAATTGGAAGCACT+TGG | - | tig0030488:32853-32872 | Msa1443640:CDS | 40.0% |
| AAAGCAAAGAATAGAAGGGC+AGG | - | tig0030488:32876-32895 | Msa1443640:CDS | 40.0% | |
| ! | GGTAATTCCATTGGTGTTCA+TGG | - | tig0030488:31341-31360 | Msa1443640:CDS | 40.0% |
| ! | TTCCATTGGTGTTCATGGTT+TGG | - | tig0030488:31346-31365 | Msa1443640:CDS | 40.0% |
| ! | TCCATTGGTGTTCATGGTTT+GGG | - | tig0030488:31347-31366 | Msa1443640:CDS | 40.0% |
| TAAGGAGGTTTAGTGTGCTT+TGG | + | tig0030488:31514-31533 | None:intergenic | 40.0% | |
| ! | AAAGACTTTGGTAGCAACGT+TGG | - | tig0030488:31542-31561 | Msa1443640:CDS | 40.0% |
| ! | GTTCGTTGATTAGTCCTGAA+AGG | + | tig0030488:31571-31590 | None:intergenic | 40.0% |
| ATTGTCAAAACTACCCATGG+TGG | + | tig0030488:31599-31618 | None:intergenic | 40.0% | |
| CCTATTGTCAAAACTACCCA+TGG | + | tig0030488:31602-31621 | None:intergenic | 40.0% | |
| !!! | CCATGGGTAGTTTTGACAAT+AGG | - | tig0030488:31599-31618 | Msa1443640:CDS | 40.0% |
| AGACACATTTGCCAAACTTG+TGG | + | tig0030488:31689-31708 | None:intergenic | 40.0% | |
| ! | TCTCAGTCTTTTGCAAACAC+TGG | - | tig0030488:31731-31750 | Msa1443640:CDS | 40.0% |
| !!! | GCGGTTTTGGGAATTCTTAA+AGG | - | tig0030488:31797-31816 | Msa1443640:CDS | 40.0% |
| !! | AAAGGCTATGTTGGTCTTAG+TGG | - | tig0030488:31815-31834 | Msa1443640:CDS | 40.0% |
| AAAGCAAAGGAAATAGCAGC+AGG | + | tig0030488:31917-31936 | None:intergenic | 40.0% | |
| TCAATGAAAACAACGGCAAG+TGG | + | tig0030488:32130-32149 | None:intergenic | 40.0% | |
| ! | GTTACTATTTGCACTGGTGA+AGG | + | tig0030488:32196-32215 | None:intergenic | 40.0% |
| CCTTCTGTTACTATTTGCAC+TGG | + | tig0030488:32202-32221 | None:intergenic | 40.0% | |
| CCAGTGCAAATAGTAACAGA+AGG | - | tig0030488:32199-32218 | Msa1443640:CDS | 40.0% | |
| TGTTGAACTGAGGTTGTTGT+TGG | + | tig0030488:32245-32264 | None:intergenic | 40.0% | |
| ! | AACACATCTTCCCACCATTT+TGG | + | tig0030488:32304-32323 | None:intergenic | 40.0% |
| TAATCATTACCTCTTGCTGG+TGG | + | tig0030488:32331-32350 | None:intergenic | 40.0% | |
| !! | TGGTGTTGGTGGAACTTTAA+CGG | - | tig0030488:32411-32430 | Msa1443640:CDS | 40.0% |
| !! | TATCTAGGACGTGTTTTCTC+AGG | - | tig0030488:32523-32542 | Msa1443640:CDS | 40.0% |
| AAAGTAAGCATAAGAGGACG+AGG | + | tig0030488:32586-32605 | None:intergenic | 40.0% | |
| AACTCTCTTTGTCTCATGTG+TGG | - | tig0030488:32606-32625 | Msa1443640:CDS | 40.0% | |
| ACTCTCTTTGTCTCATGTGT+GGG | - | tig0030488:32607-32626 | Msa1443640:CDS | 40.0% | |
| GCACATCAAATGCTATCAGA+AGG | + | tig0030488:32636-32655 | None:intergenic | 40.0% | |
| ATAGCATTTGATGTGCCTGA+GGG | - | tig0030488:32640-32659 | Msa1443640:CDS | 40.0% | |
| !! | AAGAAGCAATTGGAAGCACT+TGG | - | tig0030488:32853-32872 | Msa1443640:CDS | 40.0% |
| AAAGCAAAGAATAGAAGGGC+AGG | - | tig0030488:32876-32895 | Msa1443640:CDS | 40.0% | |
| TCCCAAACCATGAACACCAA+TGG | + | tig0030488:31351-31370 | None:intergenic | 45.0% | |
| AAAAATGACGAACCACCGTC+CGG | + | tig0030488:31405-31424 | None:intergenic | 45.0% | |
| GTATAGACCGAACATGTAGG+TGG | + | tig0030488:31459-31478 | None:intergenic | 45.0% | |
| GGAGTATAGACCGAACATGT+AGG | + | tig0030488:31462-31481 | None:intergenic | 45.0% | |
| TCAACGAACTCTATCCACCA+TGG | - | tig0030488:31582-31601 | Msa1443640:CDS | 45.0% | |
| CAACGAACTCTATCCACCAT+GGG | - | tig0030488:31583-31602 | Msa1443640:CDS | 45.0% | |
| AAGAATTTCCCGGAATCTCG+TGG | - | tig0030488:31773-31792 | Msa1443640:CDS | 45.0% | |
| ! | TGGTCTTGCTGGATTCTTGT+TGG | - | tig0030488:32018-32037 | Msa1443640:CDS | 45.0% |
| ! | GTATGGTTTAAGTGCTGCTG+TGG | - | tig0030488:32084-32103 | Msa1443640:CDS | 45.0% |
| GACTGAAACTGAAACAGCAG+AGG | + | tig0030488:32269-32288 | None:intergenic | 45.0% | |
| GTGGCATGTATTTGTGGTGT+TGG | - | tig0030488:32397-32416 | Msa1443640:CDS | 45.0% | |
| ! | GCATGTATTTGTGGTGTTGG+TGG | - | tig0030488:32400-32419 | Msa1443640:CDS | 45.0% |
| GATAGCATTTGATGTGCCTG+AGG | - | tig0030488:32639-32658 | Msa1443640:CDS | 45.0% | |
| GAAGTGTAGCAAGTCCACTT+GGG | - | tig0030488:32779-32798 | Msa1443640:CDS | 45.0% | |
| GTGCTTAATGTGAAGATCGC+TGG | - | tig0030488:32808-32827 | Msa1443640:CDS | 45.0% | |
| GGGCAGGAATTGAATTGTGT+TGG | - | tig0030488:32892-32911 | Msa1443640:CDS | 45.0% | |
| TAGGGAAGAAGCTGAAATGG+TGG | - | tig0030488:33038-33057 | Msa1443640:CDS | 45.0% | |
| ! | AATGGTGGAGGTAAAGAACG+AGG | - | tig0030488:33053-33072 | Msa1443640:CDS | 45.0% |
| ! | ATGGTGGAGGTAAAGAACGA+GGG | - | tig0030488:33054-33073 | Msa1443640:CDS | 45.0% |
| TCCCAAACCATGAACACCAA+TGG | + | tig0030488:31351-31370 | None:intergenic | 45.0% | |
| AAAAATGACGAACCACCGTC+CGG | + | tig0030488:31405-31424 | None:intergenic | 45.0% | |
| GTATAGACCGAACATGTAGG+TGG | + | tig0030488:31459-31478 | None:intergenic | 45.0% | |
| GGAGTATAGACCGAACATGT+AGG | + | tig0030488:31462-31481 | None:intergenic | 45.0% | |
| TCAACGAACTCTATCCACCA+TGG | - | tig0030488:31582-31601 | Msa1443640:CDS | 45.0% | |
| CAACGAACTCTATCCACCAT+GGG | - | tig0030488:31583-31602 | Msa1443640:CDS | 45.0% | |
| AAGAATTTCCCGGAATCTCG+TGG | - | tig0030488:31773-31792 | Msa1443640:CDS | 45.0% | |
| ! | TGGTCTTGCTGGATTCTTGT+TGG | - | tig0030488:32018-32037 | Msa1443640:CDS | 45.0% |
| ! | GTATGGTTTAAGTGCTGCTG+TGG | - | tig0030488:32084-32103 | Msa1443640:CDS | 45.0% |
| GACTGAAACTGAAACAGCAG+AGG | + | tig0030488:32269-32288 | None:intergenic | 45.0% | |
| GTGGCATGTATTTGTGGTGT+TGG | - | tig0030488:32397-32416 | Msa1443640:CDS | 45.0% | |
| ! | GCATGTATTTGTGGTGTTGG+TGG | - | tig0030488:32400-32419 | Msa1443640:CDS | 45.0% |
| GATAGCATTTGATGTGCCTG+AGG | - | tig0030488:32639-32658 | Msa1443640:CDS | 45.0% | |
| GAAGTGTAGCAAGTCCACTT+GGG | - | tig0030488:32779-32798 | Msa1443640:CDS | 45.0% | |
| GTGCTTAATGTGAAGATCGC+TGG | - | tig0030488:32808-32827 | Msa1443640:CDS | 45.0% | |
| GGGCAGGAATTGAATTGTGT+TGG | - | tig0030488:32892-32911 | Msa1443640:CDS | 45.0% | |
| TAGGGAAGAAGCTGAAATGG+TGG | - | tig0030488:33038-33057 | Msa1443640:CDS | 45.0% | |
| ! | AATGGTGGAGGTAAAGAACG+AGG | - | tig0030488:33053-33072 | Msa1443640:CDS | 45.0% |
| ! | ATGGTGGAGGTAAAGAACGA+GGG | - | tig0030488:33054-33073 | Msa1443640:CDS | 45.0% |
| CTCACCGTCCAATTCATCAC+CGG | - | tig0030488:31383-31402 | Msa1443640:CDS | 50.0% | |
| GGCTGCCATGATTAGAAAGG+AGG | + | tig0030488:31429-31448 | None:intergenic | 50.0% | |
| TTTCTAATCATGGCAGCCGC+CGG | - | tig0030488:31431-31450 | Msa1443640:CDS | 50.0% | |
| ! | AGCAACGTTGGTGTCCTTTC+AGG | - | tig0030488:31554-31573 | Msa1443640:CDS | 50.0% |
| CAGCAGAGGTTGTTGAACTG+AGG | + | tig0030488:32255-32274 | None:intergenic | 50.0% | |
| GTGTTCAATCCACCAGCAAG+AGG | - | tig0030488:32319-32338 | Msa1443640:CDS | 50.0% | |
| ! | GGAAGTGTAGCAAGTCCACT+TGG | - | tig0030488:32778-32797 | Msa1443640:CDS | 50.0% |
| GGAAGAAGCTGAAATGGTGG+AGG | - | tig0030488:33041-33060 | Msa1443640:CDS | 50.0% | |
| CTCACCGTCCAATTCATCAC+CGG | - | tig0030488:31383-31402 | Msa1443640:CDS | 50.0% | |
| GGCTGCCATGATTAGAAAGG+AGG | + | tig0030488:31429-31448 | None:intergenic | 50.0% | |
| TTTCTAATCATGGCAGCCGC+CGG | - | tig0030488:31431-31450 | Msa1443640:CDS | 50.0% | |
| ! | AGCAACGTTGGTGTCCTTTC+AGG | - | tig0030488:31554-31573 | Msa1443640:CDS | 50.0% |
| CAGCAGAGGTTGTTGAACTG+AGG | + | tig0030488:32255-32274 | None:intergenic | 50.0% | |
| GTGTTCAATCCACCAGCAAG+AGG | - | tig0030488:32319-32338 | Msa1443640:CDS | 50.0% | |
| ! | GGAAGTGTAGCAAGTCCACT+TGG | - | tig0030488:32778-32797 | Msa1443640:CDS | 50.0% |
| GGAAGAAGCTGAAATGGTGG+AGG | - | tig0030488:33041-33060 | Msa1443640:CDS | 50.0% | |
| GCGGCCGTAGGTAATTCCAT+TGG | - | tig0030488:31332-31351 | Msa1443640:CDS | 55.0% | |
| CCGTCCGGTGATGAATTGGA+CGG | + | tig0030488:31390-31409 | None:intergenic | 55.0% | |
| CCGTCCAATTCATCACCGGA+CGG | - | tig0030488:31387-31406 | Msa1443640:CDS | 55.0% | |
| TCCAATTCATCACCGGACGG+TGG | - | tig0030488:31390-31409 | Msa1443640:CDS | 55.0% | |
| ACCACCGTCCGGTGATGAAT+TGG | + | tig0030488:31394-31413 | None:intergenic | 55.0% | |
| GGCGGCTGCCATGATTAGAA+AGG | + | tig0030488:31432-31451 | None:intergenic | 55.0% | |
| ACCGAACATGTAGGTGGCTC+CGG | + | tig0030488:31453-31472 | None:intergenic | 55.0% | |
| AAAACCGCGCCACGAGATTC+CGG | + | tig0030488:31785-31804 | None:intergenic | 55.0% | |
| ! | GAATCTCGTGGCGCGGTTTT+GGG | - | tig0030488:31785-31804 | Msa1443640:CDS | 55.0% |
| GAAGCTACGTAGAGACCCTC+AGG | + | tig0030488:32658-32677 | None:intergenic | 55.0% | |
| GCGGCCGTAGGTAATTCCAT+TGG | - | tig0030488:31332-31351 | Msa1443640:CDS | 55.0% | |
| CCGTCCGGTGATGAATTGGA+CGG | + | tig0030488:31390-31409 | None:intergenic | 55.0% | |
| CCGTCCAATTCATCACCGGA+CGG | - | tig0030488:31387-31406 | Msa1443640:CDS | 55.0% | |
| TCCAATTCATCACCGGACGG+TGG | - | tig0030488:31390-31409 | Msa1443640:CDS | 55.0% | |
| ACCACCGTCCGGTGATGAAT+TGG | + | tig0030488:31394-31413 | None:intergenic | 55.0% | |
| GGCGGCTGCCATGATTAGAA+AGG | + | tig0030488:31432-31451 | None:intergenic | 55.0% | |
| ACCGAACATGTAGGTGGCTC+CGG | + | tig0030488:31453-31472 | None:intergenic | 55.0% | |
| AAAACCGCGCCACGAGATTC+CGG | + | tig0030488:31785-31804 | None:intergenic | 55.0% | |
| ! | GAATCTCGTGGCGCGGTTTT+GGG | - | tig0030488:31785-31804 | Msa1443640:CDS | 55.0% |
| GAAGCTACGTAGAGACCCTC+AGG | + | tig0030488:32658-32677 | None:intergenic | 55.0% | |
| GAACATGTAGGTGGCTCCGG+CGG | + | tig0030488:31450-31469 | None:intergenic | 60.0% | |
| GCCGGAGCCACCTACATGTT+CGG | - | tig0030488:31449-31468 | Msa1443640:CDS | 60.0% | |
| TTTCCCGGAATCTCGTGGCG+CGG | - | tig0030488:31778-31797 | Msa1443640:CDS | 60.0% | |
| AAACCGCGCCACGAGATTCC+GGG | + | tig0030488:31784-31803 | None:intergenic | 60.0% | |
| ! | GGAATCTCGTGGCGCGGTTT+TGG | - | tig0030488:31784-31803 | Msa1443640:CDS | 60.0% |
| GAACATGTAGGTGGCTCCGG+CGG | + | tig0030488:31450-31469 | None:intergenic | 60.0% | |
| GCCGGAGCCACCTACATGTT+CGG | - | tig0030488:31449-31468 | Msa1443640:CDS | 60.0% | |
| TTTCCCGGAATCTCGTGGCG+CGG | - | tig0030488:31778-31797 | Msa1443640:CDS | 60.0% | |
| AAACCGCGCCACGAGATTCC+GGG | + | tig0030488:31784-31803 | None:intergenic | 60.0% | |
| ! | GGAATCTCGTGGCGCGGTTT+TGG | - | tig0030488:31784-31803 | Msa1443640:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0030488 | gene | 31329 | 33131 | 31329 | ID=Msa1443640;Name=Msa1443640 |
| tig0030488 | mRNA | 31329 | 33131 | 31329 | ID=Msa1443640-mRNA-1;Parent=Msa1443640;Name=Msa1443640-mRNA-1;_AED=0.33;_eAED=0.33;_QI=0|-1|0|1|-1|1|1|0|600 |
| tig0030488 | exon | 31329 | 33131 | 31329 | ID=Msa1443640-mRNA-1:exon:14027;Parent=Msa1443640-mRNA-1 |
| tig0030488 | CDS | 31329 | 33131 | 31329 | ID=Msa1443640-mRNA-1:cds;Parent=Msa1443640-mRNA-1 |
| Gene Sequence |
| Protein sequence |
