AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1119920

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1119920 MtrunA17_Chr7g0252031 99.003 301 2 1 1 300 1 301 0.0 601
Msa1119920 MtrunA17_Chr7g0268591 57.246 276 117 1 23 298 22 296 7.56e-113 328
Msa1119920 MtrunA17_Chr7g0244061 48.897 272 126 4 32 290 27 298 1.72e-82 251
Msa1119920 MtrunA17_Chr4g0025971 50.373 268 122 5 32 298 12 269 2.63e-77 236
Msa1119920 MtrunA17_Chr4g0026001 51.172 256 115 5 32 286 12 258 8.42e-77 235
Msa1119920 MtrunA17_Chr7g0266981 49.810 263 124 5 32 293 11 266 1.68e-71 222
Msa1119920 MtrunA17_Chr4g0044111 49.810 263 124 5 32 293 11 266 1.92e-71 221
Msa1119920 MtrunA17_Chr7g0270451 47.388 268 132 4 32 297 4 264 9.56e-71 219
Msa1119920 MtrunA17_Chr4g0025981 48.846 260 122 6 35 293 42 291 1.39e-70 221
Msa1119920 MtrunA17_Chr4g0044131 43.939 264 141 3 31 293 5 262 8.90e-70 217
Msa1119920 MtrunA17_Chr7g0270441 45.594 261 134 4 32 290 4 258 2.36e-69 216
Msa1119920 MtrunA17_Chr7g0266891 49.042 261 125 5 34 293 7 260 5.63e-68 213
Msa1119920 MtrunA17_Chr2g0324021 45.113 266 136 7 32 295 4 261 6.38e-68 212
Msa1119920 MtrunA17_Chr4g0040371 45.956 272 136 7 32 296 17 284 9.66e-68 213
Msa1119920 MtrunA17_Chr3g0084871 46.591 264 125 4 32 286 14 270 9.20e-66 207
Msa1119920 MtrunA17_Chr6g0459261 41.797 256 140 5 33 285 24 273 1.22e-59 191
Msa1119920 MtrunA17_Chr6g0459301 41.016 256 142 5 33 285 13 262 2.65e-59 190
Msa1119920 MtrunA17_Chr7g0267001 39.394 264 135 3 31 293 5 244 4.93e-58 187
Msa1119920 MtrunA17_Chr6g0459281 40.076 262 148 5 27 285 6 261 3.68e-56 182
Msa1119920 MtrunA17_Chr6g0459351 39.922 258 142 6 33 285 12 261 1.69e-55 181
Msa1119920 MtrunA17_Chr7g0267011 48.947 190 95 2 31 219 5 193 3.71e-54 174
Msa1119920 MtrunA17_Chr6g0459331 40.000 260 145 6 33 288 12 264 3.31e-53 174
Msa1119920 MtrunA17_Chr6g0459271 39.453 256 146 5 33 285 12 261 7.77e-52 171
Msa1119920 MtrunA17_Chr7g0266991 43.404 235 111 5 32 266 23 235 3.18e-44 150
Msa1119920 MtrunA17_Chr3g0142651 54.135 133 60 1 114 246 1 132 6.91e-44 146
Msa1119920 MtrunA17_Chr6g0463951 46.067 178 88 4 114 290 1 171 2.46e-40 138
Msa1119920 MtrunA17_Chr4g0044121 46.667 180 89 4 114 293 1 173 6.74e-38 132
Msa1119920 MtrunA17_Chr7g0270471 46.053 152 76 3 141 291 1 147 1.73e-34 122
Msa1119920 MtrunA17_Chr3g0122901 30.888 259 161 6 32 285 73 318 3.51e-27 108
Msa1119920 MtrunA17_Chr7g0270461 50.980 102 49 1 23 123 35 136 1.16e-26 102
Msa1119920 MtrunA17_Chr3g0112151 29.930 284 178 9 7 286 65 331 1.63e-23 98.6
Msa1119920 MtrunA17_Chr4g0075531 29.344 259 167 6 32 287 5 250 3.00e-23 95.9
Msa1119920 MtrunA17_Chr3g0112171 31.128 257 162 7 34 286 15 260 1.56e-22 94.4
Msa1119920 MtrunA17_Chr3g0112141 30.620 258 164 7 34 287 17 263 2.07e-22 94.4
Msa1119920 MtrunA17_Chr7g0259531 29.963 267 154 10 34 285 11 259 6.38e-21 90.1
Msa1119920 MtrunA17_Chr3g0112261 30.943 265 162 8 30 286 13 264 6.81e-21 90.1
Msa1119920 MtrunA17_Chr4g0028911 29.389 262 167 7 34 286 11 263 2.60e-20 88.6
Msa1119920 MtrunA17_Chr7g0259521 28.464 267 170 8 34 291 6 260 2.60e-20 88.2
Msa1119920 MtrunA17_Chr1g0191751 28.897 263 163 7 33 284 100 349 6.84e-20 88.6
Msa1119920 MtrunA17_Chr4g0074511 29.545 264 161 10 33 284 39 289 1.91e-19 86.3
Msa1119920 MtrunA17_Chr4g0028921 29.278 263 166 8 34 286 11 263 2.61e-19 85.5
Msa1119920 MtrunA17_Chr7g0272961 28.897 263 163 7 33 284 39 288 3.82e-19 85.5
Msa1119920 MtrunA17_Chr1g0171831 27.308 260 166 7 32 277 12 262 1.97e-18 83.2
Msa1119920 MtrunA17_Chr7g0239511 30.035 283 174 8 8 286 3 265 1.84e-17 80.5
Msa1119920 MtrunA17_Chr4g0054341 30.366 191 125 3 35 222 3 188 3.88e-17 79.7
Msa1119920 MtrunA17_Chr1g0182511 28.626 262 165 8 34 285 14 263 1.02e-16 78.2
Msa1119920 MtrunA17_Chr7g0239481 29.070 258 168 6 34 285 15 263 5.75e-16 76.3
Msa1119920 MtrunA17_Chr7g0239491 28.517 263 166 8 34 287 15 264 8.50e-16 75.9
Msa1119920 MtrunA17_Chr3g0112271 27.626 257 171 7 34 286 17 262 1.42e-15 75.1
Msa1119920 MtrunA17_Chr8g0357481 29.323 266 160 11 34 285 14 265 1.84e-15 75.5
Msa1119920 MtrunA17_Chr7g0239501 27.413 259 173 6 34 286 16 265 1.18e-14 72.4
Msa1119920 MtrunA17_Chr4g0033091 31.193 218 120 8 31 226 21 230 2.08e-12 65.9
Msa1119920 MtrunA17_Chr7g0239451 27.907 258 175 7 34 287 16 266 2.12e-12 65.9
Msa1119920 MtrunA17_Chr7g0249571 26.804 194 133 4 34 220 38 229 4.28e-12 65.9
Msa1119920 MtrunA17_Chr4g0032181 27.317 205 125 4 89 286 59 246 4.96e-11 62.0
Msa1119920 MtrunA17_Chr4g0076931 29.907 214 130 7 29 226 1 210 5.67e-11 61.6
Msa1119920 MtrunA17_Chr8g0386201 24.873 197 130 6 36 223 47 234 7.68e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1119920 AT3G26760.1 58.863 299 119 2 1 295 1 299 6.28e-125 359
Msa1119920 AT3G26770.1 59.176 267 109 0 32 298 39 305 6.61e-118 341
Msa1119920 AT4G03140.1 55.597 268 118 1 32 299 76 342 1.11e-103 306
Msa1119920 AT3G51680.1 48.889 270 127 5 32 290 30 299 2.52e-77 238
Msa1119920 AT2G47120.1 45.725 269 131 6 31 297 3 258 3.61e-70 218
Msa1119920 AT2G47120.2 45.693 267 130 6 33 297 6 259 8.23e-70 217
Msa1119920 AT2G47130.1 45.211 261 133 4 31 289 3 255 1.21e-68 214
Msa1119920 AT3G29250.3 42.456 285 155 5 7 289 15 292 1.68e-68 215
Msa1119920 AT3G29260.1 44.828 261 134 4 31 289 3 255 6.43e-68 213
Msa1119920 AT2G47140.1 44.444 261 136 5 31 289 3 256 1.60e-67 211
Msa1119920 AT3G29250.2 44.828 261 135 5 31 289 3 256 1.55e-66 209
Msa1119920 AT3G29250.1 42.160 287 155 6 7 289 15 294 1.60e-66 210
Msa1119920 AT1G52340.1 43.071 267 133 4 32 286 16 275 2.41e-59 191
Msa1119920 AT3G42960.1 47.126 261 129 6 32 287 6 262 1.10e-58 189
Msa1119920 AT2G47150.1 31.128 257 117 7 34 289 1 198 1.41e-26 103
Msa1119920 AT5G18210.1 31.061 264 158 9 34 285 8 259 2.15e-25 102
Msa1119920 AT1G63380.3 30.451 266 160 8 34 286 15 268 9.58e-25 100
Msa1119920 AT1G63380.1 30.451 266 160 8 34 286 17 270 9.94e-25 100
Msa1119920 AT1G63380.2 30.451 266 160 8 34 286 22 275 1.02e-24 101
Msa1119920 AT1G63380.4 30.451 266 160 8 34 286 19 272 1.05e-24 100
Msa1119920 AT2G17845.1 30.038 263 163 6 34 284 47 300 1.06e-23 99.0
Msa1119920 AT1G62610.1 29.811 265 163 7 34 286 14 267 1.32e-23 97.8
Msa1119920 AT1G62610.3 29.811 265 163 7 34 286 15 268 1.33e-23 97.8
Msa1119920 AT1G62610.2 29.811 265 163 7 34 286 13 266 1.34e-23 97.8
Msa1119920 AT1G62610.4 29.811 265 163 7 34 286 19 272 1.49e-23 97.8
Msa1119920 AT3G55290.2 30.916 262 163 6 34 286 17 269 1.26e-22 95.1
Msa1119920 AT3G55290.1 30.916 262 163 6 34 286 18 270 1.33e-22 95.1
Msa1119920 AT2G29150.1 31.818 264 163 11 34 293 16 266 2.08e-22 94.4
Msa1119920 AT4G13180.1 29.885 261 162 9 34 285 13 261 9.81e-22 92.4
Msa1119920 AT1G24360.1 27.645 293 187 9 1 285 42 317 1.26e-21 93.2
Msa1119920 AT2G29370.1 29.057 265 172 8 34 294 16 268 3.47e-21 91.3
Msa1119920 AT5G18210.2 31.048 248 147 9 34 269 8 243 6.75e-21 90.5
Msa1119920 AT3G03980.1 29.478 268 161 8 34 285 14 269 7.29e-21 90.1
Msa1119920 AT5G06060.1 27.778 270 167 9 34 293 9 260 3.60e-20 88.2
Msa1119920 AT2G29340.2 28.030 264 174 7 34 293 7 258 5.76e-20 87.8
Msa1119920 AT2G29340.1 28.030 264 174 7 34 293 7 258 9.69e-20 87.8
Msa1119920 AT2G29360.1 27.985 268 176 9 34 296 16 271 3.87e-19 85.5
Msa1119920 AT3G55310.1 29.963 267 159 8 34 286 17 269 4.19e-19 85.5
Msa1119920 AT2G29300.1 27.652 264 163 8 34 286 7 253 5.14e-19 85.1
Msa1119920 AT3G04000.1 29.104 268 161 8 34 284 14 269 5.57e-19 85.1
Msa1119920 AT4G05530.1 31.061 264 156 10 32 287 7 252 6.91e-19 84.7
Msa1119920 AT1G54870.2 28.030 264 164 8 33 284 83 332 7.75e-19 85.9
Msa1119920 AT1G54870.1 28.030 264 164 8 33 284 81 330 8.13e-19 85.5
Msa1119920 AT2G29310.1 27.068 266 174 8 34 293 7 258 1.01e-18 84.3
Msa1119920 AT2G29300.2 27.652 264 163 8 34 286 7 253 1.02e-18 84.7
Msa1119920 AT3G46170.1 29.278 263 168 6 33 286 25 278 1.34e-18 84.3
Msa1119920 AT3G05260.1 26.894 264 168 6 33 285 36 285 2.19e-18 84.0
Msa1119920 AT2G29290.2 28.679 265 171 10 34 293 7 258 8.75e-18 81.6
Msa1119920 AT1G10310.1 31.343 201 124 4 37 226 18 215 2.34e-17 80.1
Msa1119920 AT2G29320.1 26.966 267 174 8 34 293 13 265 3.20e-17 80.1
Msa1119920 AT2G29340.3 29.381 194 130 4 34 223 7 197 5.98e-17 78.2
Msa1119920 AT2G29340.4 29.381 194 130 4 34 223 7 197 5.98e-17 78.2
Msa1119920 AT2G30670.1 27.273 264 176 9 34 293 7 258 1.27e-16 78.6
Msa1119920 AT2G29330.1 26.692 266 175 7 34 293 7 258 4.67e-16 76.6
Msa1119920 AT2G29350.1 27.444 266 176 9 34 295 15 267 1.25e-15 75.9
Msa1119920 AT1G07440.1 25.379 264 180 7 34 293 12 262 2.07e-15 75.1
Msa1119920 AT2G29260.1 28.731 268 174 9 34 297 68 322 2.40e-15 75.5
Msa1119920 AT2G29310.3 26.804 194 135 4 34 223 7 197 3.79e-14 70.5
Msa1119920 AT2G29320.3 27.692 195 133 4 34 223 13 204 6.80e-14 69.7
Msa1119920 AT2G29350.2 29.208 202 136 5 34 231 15 213 7.04e-14 70.1
Msa1119920 AT3G12800.1 28.000 275 171 9 34 294 10 271 1.08e-13 70.5
Msa1119920 AT2G29290.1 27.711 249 162 10 50 293 6 241 7.42e-13 67.4
Msa1119920 AT1G49670.2 27.848 237 132 8 39 252 9 229 2.30e-12 67.8
Msa1119920 AT1G49670.1 27.848 237 132 8 39 252 9 229 2.67e-12 67.4
Msa1119920 AT2G29310.2 25.620 242 161 7 51 286 22 250 4.89e-12 65.5
Msa1119920 AT3G03330.1 25.888 197 132 4 34 220 41 233 1.66e-11 64.3
Msa1119920 AT3G01980.1 24.710 259 176 6 36 284 5 254 1.79e-11 63.9
Msa1119920 AT3G01980.4 24.710 259 176 6 36 284 5 254 1.79e-11 63.9
Msa1119920 AT5G65205.1 28.502 207 134 5 29 230 1 198 1.84e-11 63.9
Msa1119920 AT5G10050.1 26.866 201 133 5 35 230 6 197 5.13e-11 62.4

Find 110 sgRNAs with CRISPR-Local

Find 234 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCAATTCCTTTGCAACTTT+TGG 0.096535 7_3:+69073833 None:intergenic
GTTATGCTTGGTGGGATTAC+TGG 0.172423 7_3:+69073686 None:intergenic
GATGGGTTGATGAGTATTTA+AGG 0.193959 7_3:+69076559 None:intergenic
AGAAGAGTGTTGACCTTTGA+TGG 0.268825 7_3:+69076503 None:intergenic
CCAATGTCATTGTATCAAAT+TGG 0.270336 7_3:-69073183 Msa1119920:CDS
AGTGGGCTATTTGGTGGGCT+TGG 0.274352 7_3:-69073324 Msa1119920:CDS
GCCAAAAGTTGCAAAGGAAT+TGG 0.277997 7_3:-69073834 Msa1119920:CDS
CGTTGTCGGCGATGATTACT+TGG 0.280742 7_3:+69073870 None:intergenic
GTGGGCTATTTGGTGGGCTT+GGG 0.302403 7_3:-69073323 Msa1119920:CDS
TCAAGCATAAGTGGGCTATT+TGG 0.324040 7_3:-69073333 Msa1119920:CDS
TATGCTTGATGTACATATAA+TGG 0.345255 7_3:+69073347 None:intergenic
CAAATTGGAAAGTTTATTCC+TGG 0.346532 7_3:-69073168 Msa1119920:CDS
AGTTCACTGCTTCCTCTACT+TGG 0.349896 7_3:+69073768 None:intergenic
TACAACAATGCTGGCATAAC+AGG 0.355905 7_3:-69073710 Msa1119920:CDS
TCCGGATCAAATCGGTTAGC+TGG 0.359659 7_3:-69072959 Msa1119920:exon
AACTTTGCCATAACAAACTA+TGG 0.360430 7_3:-69073749 Msa1119920:CDS
AAATTTCGCGTTTCCTTCTC+CGG 0.363396 7_3:-69072977 Msa1119920:CDS
TAGTTTACCATAGTTTGTTA+TGG 0.381695 7_3:+69073742 None:intergenic
CCCACCAAGCATAACAGAAT+TGG 0.384770 7_3:-69073678 Msa1119920:CDS
GTCATGAGAATCAATGTAAC+AGG 0.385275 7_3:-69073635 Msa1119920:CDS
CCCCATGTTGGACAAATTCA+TGG 0.396340 7_3:+69073894 None:intergenic
GTTAGCTGGGGTTTAAATTC+CGG 0.397609 7_3:-69072945 Msa1119920:exon
CCAAAAGTTGCAAAGGAATT+GGG 0.408007 7_3:-69073833 Msa1119920:CDS
CACCAACTTCAGCAATGGTT+TGG 0.409202 7_3:-69076257 Msa1119920:CDS
GTGATCAAGATCTGATTGTA+AGG 0.414105 7_3:+69076474 None:intergenic
ACCTTTGATGGATCTAGCTC+TGG 0.424045 7_3:+69076515 None:intergenic
TGCTAGAGCTGCATTGTACT+TGG 0.426496 7_3:-69073067 Msa1119920:CDS
GTAGACTTTGATATTGTGTA+TGG 0.435479 7_3:+69073294 None:intergenic
TCCAATTCTGTTATGCTTGG+TGG 0.440019 7_3:+69073677 None:intergenic
GGTCAGAATCTCATAGTTGA+TGG 0.441728 7_3:-69073018 Msa1119920:CDS
ACTGGATCAGCAAGTGGACT+TGG 0.446502 7_3:-69073929 Msa1119920:CDS
CCAATTCTGTTATGCTTGGT+GGG 0.447299 7_3:+69073678 None:intergenic
CCGGATCAAATCGGTTAGCT+GGG 0.451435 7_3:-69072958 Msa1119920:exon
AACCAAACCATTGCTGAAGT+TGG 0.452789 7_3:+69076255 None:intergenic
CCCAAGTTGAGTGTCGTTGT+CGG 0.453557 7_3:+69073856 None:intergenic
GTGATGATACCAAAGGGCTA+TGG 0.461101 7_3:-69073372 Msa1119920:CDS
ACACGAAATTATTCTCTTAG+TGG 0.462248 7_3:+69076626 None:intergenic
GCTAGTGAACTATGTGGAGC+TGG 0.466528 7_3:-69073246 Msa1119920:CDS
ATTTGAAAGAAAAGAAATGA+TGG 0.466642 7_3:+69076541 None:intergenic
TTTCCTTCTCCGGATCAAAT+CGG 0.468245 7_3:-69072967 Msa1119920:CDS
AATGTAACAGGAGTTATTGC+AGG 0.478783 7_3:-69073623 Msa1119920:intron
GATGATGCTAAGTTTATCTC+AGG 0.492118 7_3:-69073039 Msa1119920:CDS
GTGTGACCCTCGAACAGATA+GGG 0.495007 7_3:-69073146 Msa1119920:CDS
CAATTTCCCCTATCTGTTCG+AGG 0.495828 7_3:+69073139 None:intergenic
CACGAAATTATTCTCTTAGT+GGG 0.497747 7_3:+69076627 None:intergenic
GCCGACAACGACACTCAACT+TGG 0.498261 7_3:-69073857 Msa1119920:CDS
AGCATAAGTGGGCTATTTGG+TGG 0.499085 7_3:-69073330 Msa1119920:CDS
CCCAGCTAACCGATTTGATC+CGG 0.500853 7_3:+69072958 None:intergenic
GCCCATGAATTTGTCCAACA+TGG 0.508068 7_3:-69073896 Msa1119920:CDS
GTTCACTGCTTCCTCTACTT+GGG 0.509158 7_3:+69073769 None:intergenic
GGTGTGACCCTCGAACAGAT+AGG 0.512517 7_3:-69073147 Msa1119920:CDS
CCAATTTGATACAATGACAT+TGG 0.512550 7_3:+69073183 None:intergenic
TGATTACTTGGGCCCCATGT+TGG 0.514016 7_3:+69073882 None:intergenic
ATGCAACAGTTGGTGGAAGA+AGG 0.524744 7_3:-69076213 Msa1119920:intron
ATAATGGACCCATAGCCCTT+TGG 0.527774 7_3:+69073363 None:intergenic
CAGATAGGGGAAATTGTTAG+TGG 0.528334 7_3:-69073132 Msa1119920:CDS
TGGGGTTTAAATTCCGGTTG+TGG 0.529884 7_3:-69072939 Msa1119920:three_prime_UTR
CCCATGAATTTGTCCAACAT+GGG 0.534289 7_3:-69073895 Msa1119920:CDS
ATTCCATATACTGTGCTGAA+TGG 0.536020 7_3:+69073810 None:intergenic
TGATGATACCAAAGGGCTAT+GGG 0.539265 7_3:-69073371 Msa1119920:CDS
ATATGTACATCAAGCATAAG+TGG 0.539440 7_3:-69073342 Msa1119920:CDS
TGATACAATGACATTGGTGT+AGG 0.540244 7_3:+69073189 None:intergenic
AGATTCTATGCAACAGTTGG+TGG 0.542590 7_3:-69076220 Msa1119920:CDS
TCATGCTCAGAACACTAGCC+AGG 0.543355 7_3:-69076443 Msa1119920:intron
AATTTCCCCTATCTGTTCGA+GGG 0.544681 7_3:+69073140 None:intergenic
TTTGATATTGTGTATGGATG+AGG 0.544687 7_3:+69073300 None:intergenic
GCCACAGATTTCACCACCCC+TGG 0.546305 7_3:+69073267 None:intergenic
TTTGAAAGAAAAGAAATGAT+GGG 0.547929 7_3:+69076542 None:intergenic
GACATCATGTACAACAATGC+TGG 0.549387 7_3:-69073719 Msa1119920:CDS
ATATCAAAGTCTACAATACC+AGG 0.550206 7_3:-69073285 Msa1119920:CDS
AGGTCCAATTCTGTTATGCT+TGG 0.553618 7_3:+69073674 None:intergenic
AAGCTCACCAACTTCAGCAA+TGG 0.557570 7_3:-69076262 Msa1119920:CDS
GCATAAGTGGGCTATTTGGT+GGG 0.558522 7_3:-69073329 Msa1119920:CDS
ATCAGCAAGTGGACTTGGAA+AGG 0.560560 7_3:-69073924 Msa1119920:CDS
AATAAATGTTATTCATGTAG+TGG 0.561817 7_3:-69072907 Msa1119920:three_prime_UTR
TTGTCTCTTACAAATATAGG+AGG 0.567172 7_3:+69076601 None:intergenic
GGACCTTGATGAATTTGAGA+AGG 0.567216 7_3:-69073657 Msa1119920:CDS
ATCTGTTCGAGGGTCACACC+AGG 0.568597 7_3:+69073150 None:intergenic
AGCAGATTCTATGCAACAGT+TGG 0.569130 7_3:-69076223 Msa1119920:CDS
CCCATGTTGGACAAATTCAT+GGG 0.569913 7_3:+69073895 None:intergenic
TGACCTTCTCAAATTCATCA+AGG 0.579050 7_3:+69073654 None:intergenic
TAACCGATTTGATCCGGAGA+AGG 0.582964 7_3:+69072964 None:intergenic
TATGTACATCAAGCATAAGT+GGG 0.587715 7_3:-69073341 Msa1119920:CDS
CTAGTGAACTATGTGGAGCT+GGG 0.592576 7_3:-69073245 Msa1119920:CDS
GCTCGAGTGATGATACCAAA+GGG 0.594724 7_3:-69073378 Msa1119920:CDS
TACTGTTGAGGCCCAAGTAG+AGG 0.595487 7_3:-69073780 Msa1119920:CDS
CAGAATCTCATAGTTGATGG+AGG 0.597836 7_3:-69073015 Msa1119920:CDS
ACTTGGGCCAAAAGTTGCAA+AGG 0.603203 7_3:-69073840 Msa1119920:CDS
CGGATCAAATCGGTTAGCTG+GGG 0.603793 7_3:-69072957 Msa1119920:exon
CCGACAACGACACTCAACTT+GGG 0.607800 7_3:-69073856 Msa1119920:CDS
TGTGACCCTCGAACAGATAG+GGG 0.612645 7_3:-69073145 Msa1119920:CDS
TGATCAAGATCTGATTGTAA+GGG 0.615673 7_3:+69076475 None:intergenic
GTTGTCGGCGATGATTACTT+GGG 0.621879 7_3:+69073871 None:intergenic
CCATGAATTTGTCCAACATG+GGG 0.626707 7_3:-69073894 Msa1119920:CDS
ACCAGAGCTAGATCCATCAA+AGG 0.636456 7_3:-69076516 Msa1119920:five_prime_UTR
GGCTAGTGTTCTGAGCATGA+TGG 0.637926 7_3:+69076446 None:intergenic
ATCATAACTGGATCAGCAAG+TGG 0.638092 7_3:-69073935 Msa1119920:CDS
AGAATCTCATAGTTGATGGA+GGG 0.642750 7_3:-69073014 Msa1119920:CDS
CAATTATACAAAGATTGTTG+AGG 0.642862 7_3:+69072861 None:intergenic
CGTTGCAGGTATAAAACATG+CGG 0.648055 7_3:-69073400 Msa1119920:intron
TATCAAAGTCTACAATACCA+GGG 0.649064 7_3:-69073284 Msa1119920:CDS
AAAGTCTACAATACCAGGGG+TGG 0.651264 7_3:-69073280 Msa1119920:CDS
GGCTCGAGTGATGATACCAA+AGG 0.651712 7_3:-69073379 Msa1119920:CDS
ATCAAAGTCTACAATACCAG+GGG 0.674916 7_3:-69073283 Msa1119920:CDS
GGAATGTGATGTTACTGTTG+AGG 0.679379 7_3:-69073792 Msa1119920:CDS
ATTGGTGTAGGAATTGCAGT+TGG 0.686643 7_3:+69073201 None:intergenic
AGTGGACTTAGTGCTCTGAA+AGG 0.687194 7_3:-69073114 Msa1119920:CDS
ACCAGGGGTGGTGAAATCTG+TGG 0.689503 7_3:-69073268 Msa1119920:CDS
TCTGAAAGGTGCTAAATGTG+AGG 0.706614 7_3:-69073100 Msa1119920:CDS
TCTGTGGCTAGTGAACTATG+TGG 0.715679 7_3:-69073252 Msa1119920:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATATAGAATAATTGTT+TGG + chr7_3:69073094-69073113 None:intergenic 10.0%
!! CTTAAATACAATAAAAAAAT+TGG - chr7_3:69073646-69073665 Msa1119920:CDS 10.0%
!! AAATCATGAATAAATAAAAA+AGG + chr7_3:69073814-69073833 None:intergenic 10.0%
!! AAAAACATAAGAAAAAATAT+GGG - chr7_3:69075913-69075932 Msa1119920:intron 10.0%
!! AAATTTATTTAACATGAATT+TGG + chr7_3:69075949-69075968 None:intergenic 10.0%
!! AATTAAAAAAGAATGACTAT+TGG + chr7_3:69073063-69073082 None:intergenic 15.0%
!!! TTTAAATCTTTTATATATGC+AGG - chr7_3:69073178-69073197 Msa1119920:CDS 15.0%
!!! TTAAATCTTTTATATATGCA+GGG - chr7_3:69073179-69073198 Msa1119920:CDS 15.0%
!! TCCAAAAATAAATAAACTAT+AGG - chr7_3:69073461-69073480 Msa1119920:intron 15.0%
!!! TCCTATAGTTTATTTATTTT+TGG + chr7_3:69073465-69073484 None:intergenic 15.0%
!! CAACTGTAAATAAATAAAAA+AGG + chr7_3:69073863-69073882 None:intergenic 15.0%
!! AAATAAAGACAATAGAAATT+TGG - chr7_3:69074144-69074163 Msa1119920:intron 15.0%
!!! GTTCTTTTAAACAATTTATT+TGG - chr7_3:69074228-69074247 Msa1119920:intron 15.0%
!! TACGAATGAAAATAAAAAAT+AGG - chr7_3:69074303-69074322 Msa1119920:intron 15.0%
!!! TCATTAGTTTCATTATTTTA+TGG + chr7_3:69074343-69074362 None:intergenic 15.0%
!! AATAAAATTGAATTAAACAG+TGG + chr7_3:69074406-69074425 None:intergenic 15.0%
!! GTTCAATTAAAAAATAAAAG+TGG + chr7_3:69074641-69074660 None:intergenic 15.0%
!! AAATAAATAATGATTGATGA+TGG + chr7_3:69075368-69075387 None:intergenic 15.0%
!!! TTTGTTTTCTATTTTCTTTT+TGG + chr7_3:69075896-69075915 None:intergenic 15.0%
!! CAAAAACATAAGAAAAAATA+TGG - chr7_3:69075912-69075931 Msa1119920:intron 15.0%
!! TTTGAAAGAAAAGAAATGAT+GGG + chr7_3:69072930-69072949 None:intergenic 20.0%
!! ATTTGAAAGAAAAGAAATGA+TGG + chr7_3:69072931-69072950 None:intergenic 20.0%
!! ATAAGTATTCTGTTCTATAT+AGG - chr7_3:69073123-69073142 Msa1119920:CDS 20.0%
!! TACTATAATTGCACATAATA+TGG + chr7_3:69073335-69073354 None:intergenic 20.0%
!! CAATGAATCAAAAGTAATAT+AGG - chr7_3:69074007-69074026 Msa1119920:intron 20.0%
!!! ACTTTTGATTCAAACATATT+CGG + chr7_3:69074043-69074062 None:intergenic 20.0%
!! GTTTGAATCAAAAGTAATAT+AGG - chr7_3:69074048-69074067 Msa1119920:intron 20.0%
!!! CTTTTAAACAATTTATTTGG+TGG - chr7_3:69074231-69074250 Msa1119920:intron 20.0%
!!! ATACTTTAGTTTAGAAACAA+TGG - chr7_3:69074505-69074524 Msa1119920:intron 20.0%
!!! ATTGATTAGTTTAGAAATCT+AGG + chr7_3:69074696-69074715 None:intergenic 20.0%
!!! CACTTTTTTTTTACAATGTT+TGG + chr7_3:69074726-69074745 None:intergenic 20.0%
!! ATTATTATCTTGAAGAGATA+GGG + chr7_3:69074866-69074885 None:intergenic 20.0%
!! AATTATTATCTTGAAGAGAT+AGG + chr7_3:69074867-69074886 None:intergenic 20.0%
!! AATATGCTTACAAAAATGAA+TGG + chr7_3:69074929-69074948 None:intergenic 20.0%
!!! TAAGCATTTTTATAAGCATA+TGG - chr7_3:69074956-69074975 Msa1119920:intron 20.0%
!! AGACAAGTTTATATTTGAAA+GGG - chr7_3:69075046-69075065 Msa1119920:intron 20.0%
!!! TTACTTTTCAAAGTCATTTA+AGG - chr7_3:69075203-69075222 Msa1119920:intron 20.0%
!! ATCTTACAAAAAAATCTTGT+TGG - chr7_3:69075234-69075253 Msa1119920:intron 20.0%
!!! CATTCAATTCAATTCATTTT+TGG - chr7_3:69075479-69075498 Msa1119920:intron 20.0%
!! AATAAATGTTATTCATGTAG+TGG - chr7_3:69076562-69076581 Msa1119920:five_prime_UTR 20.0%
!! GTTTTGTCTCTTACAAATAT+AGG + chr7_3:69072874-69072893 None:intergenic 25.0%
! TCATTAAAGCTCTTTACTAT+GGG - chr7_3:69073288-69073307 Msa1119920:CDS 25.0%
! CTAAATGTACACTAAACTAT+AGG - chr7_3:69073428-69073447 Msa1119920:intron 25.0%
! TGTCAATTTAGAAGAAAGTT+GGG + chr7_3:69073531-69073550 None:intergenic 25.0%
! ATGTCAATTTAGAAGAAAGT+TGG + chr7_3:69073532-69073551 None:intergenic 25.0%
!! TATTGTATTTAAGACAAGAG+AGG + chr7_3:69073639-69073658 None:intergenic 25.0%
!! TAAGTATATGTTTTCAACAC+AGG - chr7_3:69073700-69073719 Msa1119920:CDS 25.0%
! CTAACAAATTATCTTCACAT+AGG + chr7_3:69073742-69073761 None:intergenic 25.0%
! AAGAACTATAATTACCATGT+CGG + chr7_3:69074214-69074233 None:intergenic 25.0%
! ATATTGTACTATGTATGATC+AGG - chr7_3:69074476-69074495 Msa1119920:intron 25.0%
! AGAATCATTAGTTGAGTTAT+TGG + chr7_3:69074668-69074687 None:intergenic 25.0%
! AATGATTATGATCCTGAATT+TGG + chr7_3:69074800-69074819 None:intergenic 25.0%
! TCAAATATAAACTTGTCTCA+AGG + chr7_3:69075044-69075063 None:intergenic 25.0%
! GAGACAAGTTTATATTTGAA+AGG - chr7_3:69075045-69075064 Msa1119920:intron 25.0%
! GACAAGTTTATATTTGAAAG+GGG - chr7_3:69075047-69075066 Msa1119920:intron 25.0%
!! TCATGGAGTATCAATAAAAA+TGG - chr7_3:69075097-69075116 Msa1119920:intron 25.0%
! TGAAAGTAACACAAATCTAA+AGG - chr7_3:69075163-69075182 Msa1119920:intron 25.0%
!! AAATGACTTTGAAAAGTAAG+AGG + chr7_3:69075202-69075221 None:intergenic 25.0%
! AATCTTGTTGGATAAATCTT+CGG - chr7_3:69075246-69075265 Msa1119920:intron 25.0%
!!! TCATTTCTTTTTCAACAAGT+TGG + chr7_3:69075288-69075307 None:intergenic 25.0%
!!! TAGTTTACCATAGTTTGTTA+TGG + chr7_3:69075730-69075749 None:intergenic 25.0%
! AACATAAGAAAAAATATGGG+AGG - chr7_3:69075916-69075935 Msa1119920:intron 25.0%
!! TTACAACTTTAAGTTAAAGG+TGG + chr7_3:69075976-69075995 None:intergenic 25.0%
!! GGATTACAACTTTAAGTTAA+AGG + chr7_3:69075979-69075998 None:intergenic 25.0%
!! TATGAAATTTTCTCAAGTAG+AGG + chr7_3:69076000-69076019 None:intergenic 25.0%
! CTAAATCACAGATATAACTT+AGG + chr7_3:69076028-69076047 None:intergenic 25.0%
! TATGCTTGATGTACATATAA+TGG + chr7_3:69076125-69076144 None:intergenic 25.0%
!! TATTCATAATTTTCCACAAC+CGG + chr7_3:69076546-69076565 None:intergenic 25.0%
! CAATTATACAAAGATTGTTG+AGG + chr7_3:69076611-69076630 None:intergenic 25.0%
CACGAAATTATTCTCTTAGT+GGG + chr7_3:69072845-69072864 None:intergenic 30.0%
ACACGAAATTATTCTCTTAG+TGG + chr7_3:69072846-69072865 None:intergenic 30.0%
TTGTCTCTTACAAATATAGG+AGG + chr7_3:69072871-69072890 None:intergenic 30.0%
TGATCAAGATCTGATTGTAA+GGG + chr7_3:69072997-69073016 None:intergenic 30.0%
CTCATTAAAGCTCTTTACTA+TGG - chr7_3:69073287-69073306 Msa1119920:CDS 30.0%
!!! ATTTTTTTTCCTTGATTCCC+TGG - chr7_3:69073389-69073408 Msa1119920:CDS 30.0%
! ACATTTAGAGTAGCATAATC+AGG + chr7_3:69073416-69073435 None:intergenic 30.0%
TCTAAATTGACATGTATGAG+TGG - chr7_3:69073539-69073558 Msa1119920:intron 30.0%
! GTGTCAAAAGTTTTACAATG+TGG + chr7_3:69073577-69073596 None:intergenic 30.0%
GCAAAATGTCAAATAAGTAC+AGG + chr7_3:69073939-69073958 None:intergenic 30.0%
TCAGTTCATTTCGGATAATT+TGG + chr7_3:69074102-69074121 None:intergenic 30.0%
TTGAATTCAAGTGTGTAATG+AGG + chr7_3:69074258-69074277 None:intergenic 30.0%
TAGTTTAGAAACAATGGCAA+CGG - chr7_3:69074511-69074530 Msa1119920:intron 30.0%
! GTTTATGTTTGCTAAATCCA+TGG + chr7_3:69074598-69074617 None:intergenic 30.0%
AATTTGGCTACACAACAAAA+AGG + chr7_3:69074784-69074803 None:intergenic 30.0%
! TGGACGTAGTATTTAAAGTA+TGG + chr7_3:69074905-69074924 None:intergenic 30.0%
TGCTTACAAAAATGAATGGA+TGG + chr7_3:69074925-69074944 None:intergenic 30.0%
AAGGTCTCACTACTTTAATT+TGG + chr7_3:69075025-69075044 None:intergenic 30.0%
!!! TTTCTTTTTCAACAAGTTGG+AGG + chr7_3:69075285-69075304 None:intergenic 30.0%
GAATGAATGAGAATCATCAT+GGG + chr7_3:69075464-69075483 None:intergenic 30.0%
TGAATGAATGAGAATCATCA+TGG + chr7_3:69075465-69075484 None:intergenic 30.0%
GGAAAAATTGCAATCATAAC+TGG - chr7_3:69075522-69075541 Msa1119920:intron 30.0%
AACTTTGCCATAACAAACTA+TGG - chr7_3:69075720-69075739 Msa1119920:intron 30.0%
ATATGTACATCAAGCATAAG+TGG - chr7_3:69076127-69076146 Msa1119920:intron 30.0%
TATGTACATCAAGCATAAGT+GGG - chr7_3:69076128-69076147 Msa1119920:intron 30.0%
TTTGATATTGTGTATGGATG+AGG + chr7_3:69076172-69076191 None:intergenic 30.0%
GTAGACTTTGATATTGTGTA+TGG + chr7_3:69076178-69076197 None:intergenic 30.0%
ATATCAAAGTCTACAATACC+AGG - chr7_3:69076184-69076203 Msa1119920:intron 30.0%
TATCAAAGTCTACAATACCA+GGG - chr7_3:69076185-69076204 Msa1119920:intron 30.0%
CCAATTTGATACAATGACAT+TGG + chr7_3:69076289-69076308 None:intergenic 30.0%
CCAATGTCATTGTATCAAAT+TGG - chr7_3:69076286-69076305 Msa1119920:intron 30.0%
CAAATTGGAAAGTTTATTCC+TGG - chr7_3:69076301-69076320 Msa1119920:intron 30.0%
! AGGAAACGCGAAATTTTTAA+TGG + chr7_3:69076488-69076507 None:intergenic 30.0%
!! GATGGGTTGATGAGTATTTA+AGG + chr7_3:69072913-69072932 None:intergenic 35.0%
GTGATCAAGATCTGATTGTA+AGG + chr7_3:69072998-69073017 None:intergenic 35.0%
CTATTGGAGTATATTGAACC+TGG + chr7_3:69073047-69073066 None:intergenic 35.0%
AGAGACACGTACACTTAAAA+AGG + chr7_3:69073896-69073915 None:intergenic 35.0%
GTCAAATAAGTACAGGAGTT+AGG + chr7_3:69073932-69073951 None:intergenic 35.0%
CTCATGAGTTCAGTTCATTT+CGG + chr7_3:69074111-69074130 None:intergenic 35.0%
CATATGAACATGCATATTGG+AGG + chr7_3:69074575-69074594 None:intergenic 35.0%
TGGCATATGAACATGCATAT+TGG + chr7_3:69074578-69074597 None:intergenic 35.0%
ATATGCATGTTCATATGCCA+TGG - chr7_3:69074578-69074597 Msa1119920:intron 35.0%
! TTTGTTGTGTAGCCAAATTC+AGG - chr7_3:69074785-69074804 Msa1119920:intron 35.0%
!!! CATTTTTGGTTCCAAAAAGC+AGG - chr7_3:69075493-69075512 Msa1119920:intron 35.0%
!! TTTCCTTCTAACCTGCTTTT+TGG + chr7_3:69075507-69075526 None:intergenic 35.0%
CCAAAAGTTGCAAAGGAATT+GGG - chr7_3:69075636-69075655 Msa1119920:intron 35.0%
ATTCCATATACTGTGCTGAA+TGG + chr7_3:69075662-69075681 None:intergenic 35.0%
TGACCTTCTCAAATTCATCA+AGG + chr7_3:69075818-69075837 None:intergenic 35.0%
GTCATGAGAATCAATGTAAC+AGG - chr7_3:69075834-69075853 Msa1119920:intron 35.0%
AATGTAACAGGAGTTATTGC+AGG - chr7_3:69075846-69075865 Msa1119920:intron 35.0%
ATCAAAGTCTACAATACCAG+GGG - chr7_3:69076186-69076205 Msa1119920:intron 35.0%
TGATACAATGACATTGGTGT+AGG + chr7_3:69076283-69076302 None:intergenic 35.0%
GATGATGCTAAGTTTATCTC+AGG - chr7_3:69076430-69076449 Msa1119920:intron 35.0%
!! AGAATCTCATAGTTGATGGA+GGG - chr7_3:69076455-69076474 Msa1119920:exon 35.0%
!! AGAAGAGTGTTGACCTTTGA+TGG + chr7_3:69072969-69072988 None:intergenic 40.0%
AACCAAACCATTGCTGAAGT+TGG + chr7_3:69073217-69073236 None:intergenic 40.0%
AGCAGATTCTATGCAACAGT+TGG - chr7_3:69073246-69073265 Msa1119920:CDS 40.0%
AGATTCTATGCAACAGTTGG+TGG - chr7_3:69073249-69073268 Msa1119920:CDS 40.0%
!!! GCGCTTTTTTGTGTTAACTC+CGG - chr7_3:69074169-69074188 Msa1119920:intron 40.0%
ACGGATTTCTGTGAAACACA+TGG - chr7_3:69074530-69074549 Msa1119920:intron 40.0%
CATCCTTCATCGCTAATTGA+AGG + chr7_3:69075074-69075093 None:intergenic 40.0%
CTTCAATTAGCGATGAAGGA+TGG - chr7_3:69075072-69075091 Msa1119920:intron 40.0%
GAAAGACAAAAGGAGTTGCT+TGG + chr7_3:69075419-69075438 None:intergenic 40.0%
TGTGAGAAAAGAAAGATGGG+GGG + chr7_3:69075441-69075460 None:intergenic 40.0%
GTGTGAGAAAAGAAAGATGG+GGG + chr7_3:69075442-69075461 None:intergenic 40.0%
GGTGTGAGAAAAGAAAGATG+GGG + chr7_3:69075443-69075462 None:intergenic 40.0%
GGGTGTGAGAAAAGAAAGAT+GGG + chr7_3:69075444-69075463 None:intergenic 40.0%
TGGGTGTGAGAAAAGAAAGA+TGG + chr7_3:69075445-69075464 None:intergenic 40.0%
GTTCCAAAAAGCAGGTTAGA+AGG - chr7_3:69075501-69075520 Msa1119920:intron 40.0%
ATCATAACTGGATCAGCAAG+TGG - chr7_3:69075534-69075553 Msa1119920:intron 40.0%
CCCATGTTGGACAAATTCAT+GGG + chr7_3:69075577-69075596 None:intergenic 40.0%
CCCATGAATTTGTCCAACAT+GGG - chr7_3:69075574-69075593 Msa1119920:intron 40.0%
CCATGAATTTGTCCAACATG+GGG - chr7_3:69075575-69075594 Msa1119920:intron 40.0%
GCCAAAAGTTGCAAAGGAAT+TGG - chr7_3:69075635-69075654 Msa1119920:intron 40.0%
! CCCAATTCCTTTGCAACTTT+TGG + chr7_3:69075639-69075658 None:intergenic 40.0%
GGAATGTGATGTTACTGTTG+AGG - chr7_3:69075677-69075696 Msa1119920:intron 40.0%
GACATCATGTACAACAATGC+TGG - chr7_3:69075750-69075769 Msa1119920:intron 40.0%
TACAACAATGCTGGCATAAC+AGG - chr7_3:69075759-69075778 Msa1119920:intron 40.0%
CCAATTCTGTTATGCTTGGT+GGG + chr7_3:69075794-69075813 None:intergenic 40.0%
TCCAATTCTGTTATGCTTGG+TGG + chr7_3:69075795-69075814 None:intergenic 40.0%
AGGTCCAATTCTGTTATGCT+TGG + chr7_3:69075798-69075817 None:intergenic 40.0%
GGACCTTGATGAATTTGAGA+AGG - chr7_3:69075812-69075831 Msa1119920:intron 40.0%
CGTTGCAGGTATAAAACATG+CGG - chr7_3:69076069-69076088 Msa1119920:intron 40.0%
TGATGATACCAAAGGGCTAT+GGG - chr7_3:69076098-69076117 Msa1119920:intron 40.0%
!! TCAAGCATAAGTGGGCTATT+TGG - chr7_3:69076136-69076155 Msa1119920:intron 40.0%
ATTGGTGTAGGAATTGCAGT+TGG + chr7_3:69076271-69076290 None:intergenic 40.0%
AATTTCCCCTATCTGTTCGA+GGG + chr7_3:69076332-69076351 None:intergenic 40.0%
CAGATAGGGGAAATTGTTAG+TGG - chr7_3:69076337-69076356 Msa1119920:intron 40.0%
!! TCTGAAAGGTGCTAAATGTG+AGG - chr7_3:69076369-69076388 Msa1119920:intron 40.0%
GGTCAGAATCTCATAGTTGA+TGG - chr7_3:69076451-69076470 Msa1119920:exon 40.0%
!! CAGAATCTCATAGTTGATGG+AGG - chr7_3:69076454-69076473 Msa1119920:exon 40.0%
AAATTTCGCGTTTCCTTCTC+CGG - chr7_3:69076492-69076511 Msa1119920:five_prime_UTR 40.0%
TTTCCTTCTCCGGATCAAAT+CGG - chr7_3:69076502-69076521 Msa1119920:five_prime_UTR 40.0%
GTTAGCTGGGGTTTAAATTC+CGG - chr7_3:69076524-69076543 Msa1119920:five_prime_UTR 40.0%
ACCAGAGCTAGATCCATCAA+AGG - chr7_3:69072953-69072972 Msa1119920:exon 45.0%
! ACCTTTGATGGATCTAGCTC+TGG + chr7_3:69072957-69072976 None:intergenic 45.0%
AAGCTCACCAACTTCAGCAA+TGG - chr7_3:69073207-69073226 Msa1119920:CDS 45.0%
CACCAACTTCAGCAATGGTT+TGG - chr7_3:69073212-69073231 Msa1119920:CDS 45.0%
!! ATGCAACAGTTGGTGGAAGA+AGG - chr7_3:69073256-69073275 Msa1119920:CDS 45.0%
TAATCAGGACCAGGGAATCA+AGG + chr7_3:69073401-69073420 None:intergenic 45.0%
GAGTAGCATAATCAGGACCA+GGG + chr7_3:69073409-69073428 None:intergenic 45.0%
AGAGTAGCATAATCAGGACC+AGG + chr7_3:69073410-69073429 None:intergenic 45.0%
GTACGTGTCTCTCACTTTAG+AGG - chr7_3:69073904-69073923 Msa1119920:CDS 45.0%
TGTGTTAACTCCGGATCCTA+CGG - chr7_3:69074178-69074197 Msa1119920:intron 45.0%
GGACCTTCAATTAGCGATGA+AGG - chr7_3:69075068-69075087 Msa1119920:intron 45.0%
! CAAGTTGGAGGATGATGTTG+TGG + chr7_3:69075273-69075292 None:intergenic 45.0%
AAGATGGGGGGAAAGACAAA+AGG + chr7_3:69075429-69075448 None:intergenic 45.0%
! ATCAGCAAGTGGACTTGGAA+AGG - chr7_3:69075545-69075564 Msa1119920:intron 45.0%
GCCCATGAATTTGTCCAACA+TGG - chr7_3:69075573-69075592 Msa1119920:intron 45.0%
CCCCATGTTGGACAAATTCA+TGG + chr7_3:69075578-69075597 None:intergenic 45.0%
GTTGTCGGCGATGATTACTT+GGG + chr7_3:69075601-69075620 None:intergenic 45.0%
ACTTGGGCCAAAAGTTGCAA+AGG - chr7_3:69075629-69075648 Msa1119920:intron 45.0%
GTTCACTGCTTCCTCTACTT+GGG + chr7_3:69075703-69075722 None:intergenic 45.0%
AGTTCACTGCTTCCTCTACT+TGG + chr7_3:69075704-69075723 None:intergenic 45.0%
! GTTATGCTTGGTGGGATTAC+TGG + chr7_3:69075786-69075805 None:intergenic 45.0%
CCCACCAAGCATAACAGAAT+TGG - chr7_3:69075791-69075810 Msa1119920:intron 45.0%
CTGCAACGATGAGTTTACTG+TGG + chr7_3:69076057-69076076 None:intergenic 45.0%
CACAGTAAACTCATCGTTGC+AGG - chr7_3:69076055-69076074 Msa1119920:intron 45.0%
GCTCGAGTGATGATACCAAA+GGG - chr7_3:69076091-69076110 Msa1119920:intron 45.0%
GTGATGATACCAAAGGGCTA+TGG - chr7_3:69076097-69076116 Msa1119920:intron 45.0%
!! ATAATGGACCCATAGCCCTT+TGG + chr7_3:69076109-69076128 None:intergenic 45.0%
!! AGCATAAGTGGGCTATTTGG+TGG - chr7_3:69076139-69076158 Msa1119920:intron 45.0%
!! GCATAAGTGGGCTATTTGGT+GGG - chr7_3:69076140-69076159 Msa1119920:intron 45.0%
AAAGTCTACAATACCAGGGG+TGG - chr7_3:69076189-69076208 Msa1119920:intron 45.0%
TCTGTGGCTAGTGAACTATG+TGG - chr7_3:69076217-69076236 Msa1119920:CDS 45.0%
CTAGTGAACTATGTGGAGCT+GGG - chr7_3:69076224-69076243 Msa1119920:CDS 45.0%
CAATTTCCCCTATCTGTTCG+AGG + chr7_3:69076333-69076352 None:intergenic 45.0%
! AGTGGACTTAGTGCTCTGAA+AGG - chr7_3:69076355-69076374 Msa1119920:intron 45.0%
TGCTAGAGCTGCATTGTACT+TGG - chr7_3:69076402-69076421 Msa1119920:intron 45.0%
!! TAACCGATTTGATCCGGAGA+AGG + chr7_3:69076508-69076527 None:intergenic 45.0%
TGGGGTTTAAATTCCGGTTG+TGG - chr7_3:69076530-69076549 Msa1119920:five_prime_UTR 45.0%
!! ATTAAAAATTAAAGAAAAAA+AGG + chr7_3:69073963-69073982 None:intergenic 5.0%
! GGCTAGTGTTCTGAGCATGA+TGG + chr7_3:69073026-69073045 None:intergenic 50.0%
TCATGCTCAGAACACTAGCC+AGG - chr7_3:69073026-69073045 Msa1119920:CDS 50.0%
GTGTTAACTCCGGATCCTAC+GGG - chr7_3:69074179-69074198 Msa1119920:intron 50.0%
CATATTGGAGGCAAGCTTGC+GGG + chr7_3:69074563-69074582 None:intergenic 50.0%
GCATATTGGAGGCAAGCTTG+CGG + chr7_3:69074564-69074583 None:intergenic 50.0%
AGCGATGAAGGATGGAGTCA+TGG - chr7_3:69075080-69075099 Msa1119920:intron 50.0%
! ACTGGATCAGCAAGTGGACT+TGG - chr7_3:69075540-69075559 Msa1119920:intron 50.0%
TGATTACTTGGGCCCCATGT+TGG + chr7_3:69075590-69075609 None:intergenic 50.0%
CGTTGTCGGCGATGATTACT+TGG + chr7_3:69075602-69075621 None:intergenic 50.0%
! CCCAAGTTGAGTGTCGTTGT+CGG + chr7_3:69075616-69075635 None:intergenic 50.0%
CCGACAACGACACTCAACTT+GGG - chr7_3:69075613-69075632 Msa1119920:intron 50.0%
GGGCCATTCAGCACAGTATA+TGG - chr7_3:69075656-69075675 Msa1119920:intron 50.0%
TACTGTTGAGGCCCAAGTAG+AGG - chr7_3:69075689-69075708 Msa1119920:intron 50.0%
GGCTCGAGTGATGATACCAA+AGG - chr7_3:69076090-69076109 Msa1119920:intron 50.0%
GCTAGTGAACTATGTGGAGC+TGG - chr7_3:69076223-69076242 Msa1119920:CDS 50.0%
GTGTGACCCTCGAACAGATA+GGG - chr7_3:69076323-69076342 Msa1119920:intron 50.0%
TGTGACCCTCGAACAGATAG+GGG - chr7_3:69076324-69076343 Msa1119920:intron 50.0%
TCCGGATCAAATCGGTTAGC+TGG - chr7_3:69076510-69076529 Msa1119920:five_prime_UTR 50.0%
!! CCCAGCTAACCGATTTGATC+CGG + chr7_3:69076514-69076533 None:intergenic 50.0%
! CCGGATCAAATCGGTTAGCT+GGG - chr7_3:69076511-69076530 Msa1119920:five_prime_UTR 50.0%
! CGGATCAAATCGGTTAGCTG+GGG - chr7_3:69076512-69076531 Msa1119920:five_prime_UTR 50.0%
AACTCCGGATCCTACGGGAA+AGG - chr7_3:69074184-69074203 Msa1119920:intron 55.0%
ACTCCGGATCCTACGGGAAA+GGG - chr7_3:69074185-69074204 Msa1119920:intron 55.0%
TGTCCCTTTCCCGTAGGATC+CGG + chr7_3:69074191-69074210 None:intergenic 55.0%
GCCGACAACGACACTCAACT+TGG - chr7_3:69075612-69075631 Msa1119920:intron 55.0%
!! AGTGGGCTATTTGGTGGGCT+TGG - chr7_3:69076145-69076164 Msa1119920:intron 55.0%
!! GTGGGCTATTTGGTGGGCTT+GGG - chr7_3:69076146-69076165 Msa1119920:intron 55.0%
ACCAGGGGTGGTGAAATCTG+TGG - chr7_3:69076201-69076220 Msa1119920:intron 55.0%
ATCTGTTCGAGGGTCACACC+AGG + chr7_3:69076322-69076341 None:intergenic 55.0%
GGTGTGACCCTCGAACAGAT+AGG - chr7_3:69076322-69076341 Msa1119920:intron 55.0%
! TGTCGGTGTCCCTTTCCCGT+AGG + chr7_3:69074197-69074216 None:intergenic 60.0%
ACGGGAAAGGGACACCGACA+TGG - chr7_3:69074197-69074216 Msa1119920:intron 60.0%
GCCACAGATTTCACCACCCC+TGG + chr7_3:69076205-69076224 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 69072835 69076656 69072835 ID=Msa1119920;Name=Msa1119920
chr7_3 mRNA 69072835 69076656 69072835 ID=Msa1119920-mRNA-1;Parent=Msa1119920;Name=Msa1119920-mRNA-1;_AED=0.04;_eAED=0.04;_QI=193|1|1|1|1|1|4|128|300
chr7_3 exon 69072835 69073414 69072835 ID=Msa1119920-mRNA-1:exon:17427;Parent=Msa1119920-mRNA-1
chr7_3 exon 69073624 69073976 69073624 ID=Msa1119920-mRNA-1:exon:17426;Parent=Msa1119920-mRNA-1
chr7_3 exon 69076214 69076291 69076214 ID=Msa1119920-mRNA-1:exon:17425;Parent=Msa1119920-mRNA-1
chr7_3 exon 69076444 69076656 69076444 ID=Msa1119920-mRNA-1:exon:17424;Parent=Msa1119920-mRNA-1
chr7_3 five_prime_UTR 69076464 69076656 69076464 ID=Msa1119920-mRNA-1:five_prime_utr;Parent=Msa1119920-mRNA-1
chr7_3 CDS 69076444 69076463 69076444 ID=Msa1119920-mRNA-1:cds;Parent=Msa1119920-mRNA-1
chr7_3 CDS 69076214 69076291 69076214 ID=Msa1119920-mRNA-1:cds;Parent=Msa1119920-mRNA-1
chr7_3 CDS 69073624 69073976 69073624 ID=Msa1119920-mRNA-1:cds;Parent=Msa1119920-mRNA-1
chr7_3 CDS 69072963 69073414 69072963 ID=Msa1119920-mRNA-1:cds;Parent=Msa1119920-mRNA-1
chr7_3 three_prime_UTR 69072835 69072962 69072835 ID=Msa1119920-mRNA-1:three_prime_utr;Parent=Msa1119920-mRNA-1
Gene Sequence

>Msa1119920

ATGCTCAGAACACTAGCCAGGGAGTTGAAGCTCACCAACTTCAGCAATGGTTTGGTTAAAAAACGCAGCAGATTCTATGCAACAGTTGGTGGAAGAAGGTTAGAAGGAAAAATTGCAATCATAACTGGATCAGCAAGTGGACTTGGAAAGGCAACAGCCCATGAATTTGTCCAACATGGGGCCCAAGTAATCATCGCCGACAACGACACTCAACTTGGGCCAAAAGTTGCAAAGGAATTGGGCCATTCAGCACAGTATATGGAATGTGATGTTACTGTTGAGGCCCAAGTAGAGGAAGCAGTGAACTTTGCCATAACAAACTATGGTAAACTAGACATCATGTACAACAATGCTGGCATAACAGGACCAGTAATCCCACCAAGCATAACAGAATTGGACCTTGATGAATTTGAGAAGGTCATGAGAATCAATGTAACAGGAGTTATTGCAGGTATAAAACATGCGGCTCGAGTGATGATACCAAAGGGCTATGGGTCCATTATATGTACATCAAGCATAAGTGGGCTATTTGGTGGGCTTGGGCCTCATCCATACACAATATCAAAGTCTACAATACCAGGGGTGGTGAAATCTGTGGCTAGTGAACTATGTGGAGCTGGGATTAGAGTCAATTGCATATCACCAACTGCAATTCCTACACCAATGTCATTGTATCAAATTGGAAAGTTTATTCCTGGTGTGACCCTCGAACAGATAGGGGAAATTGTTAGTGGACTTAGTGCTCTGAAAGGTGCTAAATGTGAGGACATTGATGTTGCTAGAGCTGCATTGTACTTGGCATCAGATGATGCTAAGTTTATCTCAGGTCAGAATCTCATAGTTGATGGAGGGTTCACTTCCATTAAAAATTTCGCGTTTCCTTCTCCGGATCAAATCGGTTAG
Protein sequence

>Msa1119920

MLRTLARELKLTNFSNGLVKKRSRFYATVGGRRLEGKIAIITGSASGLGKATAHEFVQHGAQVIIADNDTQLGPKVAKELGHSAQYMECDVTVEAQVEEAVNFAITNYGKLDIMYNNAGITGPVIPPSITELDLDEFEKVMRINVTGVIAGIKHAARVMIPKGYGSIICTSSISGLFGGLGPHPYTISKSTIPGVVKSVASELCGAGIRVNCISPTAIPTPMSLYQIGKFIPGVTLEQIGEIVSGLSALKGAKCEDIDVARAALYLASDDAKFISGQNLIVDGGFTSIKNFAFPSPDQIG*