Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0615570 | XP_013457326.1 | 98.387 | 124 | 2 | 0 | 1 | 124 | 194 | 317 | 1.00e-82 | 255 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0615570 | sp|Q7DNC3|MPCP1_ARATH | 69.291 | 127 | 39 | 0 | 1 | 127 | 181 | 307 | 6.56e-63 | 197 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0027260 | Msa0615570 | 0.804781 | 1.831677e-49 | -8.615850e-47 |
| Msa0074320 | Msa0615570 | 0.811160 | 8.045446e-51 | -8.615850e-47 |
| Msa0608320 | Msa0615570 | 0.844710 | 6.388602e-59 | -8.615850e-47 |
| Msa0615570 | Msa0669520 | 0.815955 | 7.090075e-52 | -8.615850e-47 |
| Msa0615570 | Msa0738040 | 0.803647 | 3.154301e-49 | -8.615850e-47 |
| Msa0615570 | Msa1019260 | 0.809355 | 1.971204e-50 | -8.615850e-47 |
| Msa0615570 | Msa1104210 | 0.802953 | 4.391650e-49 | -8.615850e-47 |
| Msa0615570 | Msa1126510 | 0.817591 | 3.046311e-52 | -8.615850e-47 |
| Msa0615570 | Msa1166860 | 0.810822 | 9.522372e-51 | -8.615850e-47 |
| Msa0615570 | Msa1225700 | 0.821907 | 3.145557e-53 | -8.615850e-47 |
| Msa0168500 | Msa0615570 | 0.810423 | 1.161502e-50 | -8.615850e-47 |
| Msa0187690 | Msa0615570 | 0.811283 | 7.563956e-51 | -8.615850e-47 |
| Msa0199880 | Msa0615570 | 0.809003 | 2.344945e-50 | -8.615850e-47 |
| Msa0292400 | Msa0615570 | 0.807066 | 6.059636e-50 | -8.615850e-47 |
| Msa0576940 | Msa0615570 | 0.806557 | 7.762137e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0615570 | MtrunA17_Chr4g0051841 | 98.387 | 124 | 2 | 0 | 1 | 124 | 194 | 317 | 9.20e-87 | 255 |
| Msa0615570 | MtrunA17_Chr5g0407451 | 66.935 | 124 | 41 | 0 | 1 | 124 | 180 | 303 | 5.64e-60 | 186 |
| Msa0615570 | MtrunA17_Chr7g0251981 | 40.336 | 119 | 71 | 0 | 1 | 119 | 245 | 363 | 6.62e-28 | 105 |
| Msa0615570 | MtrunA17_Chr6g0461981 | 38.983 | 118 | 72 | 0 | 1 | 118 | 226 | 343 | 3.30e-27 | 103 |
| Msa0615570 | MtrunA17_Chr8g0385891 | 42.342 | 111 | 64 | 0 | 1 | 111 | 236 | 346 | 5.15e-27 | 102 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0615570 | AT2G17270.1 | 69.291 | 127 | 39 | 0 | 1 | 127 | 181 | 307 | 6.66e-64 | 197 |
| Msa0615570 | AT3G48850.1 | 45.299 | 117 | 64 | 0 | 1 | 117 | 234 | 350 | 7.79e-33 | 118 |
| Msa0615570 | AT5G14040.1 | 42.857 | 119 | 68 | 0 | 1 | 119 | 245 | 363 | 4.73e-30 | 111 |
Find 33 sgRNAs with CRISPR-Local
Find 177 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTATTCGCATTGCACTTCT+AGG | 0.169803 | 4_2:-65049660 | Msa0615570:CDS |
| GCTACAATTTAACTTCCTTC+TGG | 0.343648 | 4_2:+65047749 | None:intergenic |
| GACACTATAAAAGTGCTATC+TGG | 0.354014 | 4_2:-65049606 | Msa0615570:CDS |
| CTGTTCAAACCTGCATATGC+AGG | 0.434490 | 4_2:-65047625 | Msa0615570:three_prime_UTR |
| TTCAGGCTATCAAGAACATT+GGG | 0.434940 | 4_2:-65049710 | Msa0615570:intron |
| CCTAGAAGTGCAATGCGAAT+AGG | 0.459578 | 4_2:+65049660 | None:intergenic |
| ACCAACAGCACCAGCTGTAT+AGG | 0.459878 | 4_2:+65049882 | None:intergenic |
| CTTGCAAGTCCTCCACTAGT+AGG | 0.467604 | 4_2:+65047775 | None:intergenic |
| GCGTGGTGGTTTGATCTTGT+GGG | 0.468434 | 4_2:-65047705 | Msa0615570:three_prime_UTR |
| AACCACTGCAAAGTTACAAC+TGG | 0.478193 | 4_2:+65049636 | None:intergenic |
| AAAGGCTGAATCTGCTATGC+AGG | 0.479856 | 4_2:-65049809 | Msa0615570:intron |
| TTATTTAAGCCTGCATATGC+AGG | 0.484626 | 4_2:+65047616 | None:intergenic |
| CATGACATTGTCAGCCGGGT+TGG | 0.497330 | 4_2:+65049849 | None:intergenic |
| CGAACAAATCCCCATGAGCT+TGG | 0.497581 | 4_2:+65047562 | None:intergenic |
| TTTCAGGCTATCAAGAACAT+TGG | 0.498796 | 4_2:-65049711 | Msa0615570:intron |
| TGCTTAGCAGCCTATACAGC+TGG | 0.506119 | 4_2:-65049892 | Msa0615570:CDS |
| TGTTCTACAGCACAACAACT+TGG | 0.529039 | 4_2:-65049922 | Msa0615570:CDS |
| AGCGTGGTGGTTTGATCTTG+TGG | 0.529069 | 4_2:-65047706 | Msa0615570:three_prime_UTR |
| GCCTATACAGCTGGTGCTGT+TGG | 0.530443 | 4_2:-65049883 | Msa0615570:CDS |
| TTGCAAGTCCTCCACTAGTA+GGG | 0.544563 | 4_2:+65047776 | None:intergenic |
| CTGGTCATGACATTGTCAGC+CGG | 0.546536 | 4_2:+65049844 | None:intergenic |
| TGGTCATGACATTGTCAGCC+GGG | 0.555343 | 4_2:+65049845 | None:intergenic |
| AAATCCCCATGAGCTTGGAC+AGG | 0.566606 | 4_2:+65047567 | None:intergenic |
| TTCAACATTTGAGCATTCAG+TGG | 0.570746 | 4_2:-65049986 | Msa0615570:CDS |
| AGGACTTGCAAGAGACCAGA+AGG | 0.585105 | 4_2:-65047764 | Msa0615570:CDS |
| CACTTTAGCCCTACTAGTGG+AGG | 0.585115 | 4_2:-65047784 | Msa0615570:intron |
| AGCTTGTGCTCAAGTATCTG+TGG | 0.585232 | 4_2:-65047729 | Msa0615570:three_prime_UTR |
| GACCAGTTGTAACTTTGCAG+TGG | 0.589165 | 4_2:-65049638 | Msa0615570:CDS |
| TTACACTTTAGCCCTACTAG+TGG | 0.625977 | 4_2:-65047787 | Msa0615570:intron |
| TGGTACTGTAATTTCCAACC+CGG | 0.633731 | 4_2:-65049863 | Msa0615570:CDS |
| AATCATGCATAGAAGAAAGG+AGG | 0.643254 | 4_2:-65049947 | Msa0615570:CDS |
| CAAGTATCTGTGGAGCGTGG+TGG | 0.685475 | 4_2:-65047719 | Msa0615570:three_prime_UTR |
| GCTCAAGTATCTGTGGAGCG+TGG | 0.751787 | 4_2:-65047722 | Msa0615570:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTCAGTAATATAATAAATTA+GGG | - | chr4_2:65048280-65048299 | Msa0615570:intron | 10.0% |
| !!! | GCATGATTTTTTTATATATT+AGG | + | chr4_2:65047583-65047602 | None:intergenic | 15.0% |
| !! | ATCAATCAAATTAACTTTAT+TGG | - | chr4_2:65047798-65047817 | Msa0615570:intron | 15.0% |
| !! | CTTCAGTAATATAATAAATT+AGG | - | chr4_2:65048279-65048298 | Msa0615570:intron | 15.0% |
| !! | TTAAATAAAAAACATAACAG+AGG | + | chr4_2:65048985-65049004 | None:intergenic | 15.0% |
| !!! | TTTTTATTTAAACTTGCATA+AGG | - | chr4_2:65048994-65049013 | Msa0615570:intron | 15.0% |
| !! | TTAATATTCCAAATGAATCA+GGG | + | chr4_2:65047776-65047795 | None:intergenic | 20.0% |
| !! | TTTAATATTCCAAATGAATC+AGG | + | chr4_2:65047777-65047796 | None:intergenic | 20.0% |
| !! | TTAAAAAAGGTTTATAGTAC+AGG | + | chr4_2:65047991-65048010 | None:intergenic | 20.0% |
| !! | ACAGGAAAACTTATTAAAAA+AGG | + | chr4_2:65048004-65048023 | None:intergenic | 20.0% |
| !!! | AAGTTTTCCTGTATTATAAT+AGG | - | chr4_2:65048012-65048031 | Msa0615570:intron | 20.0% |
| !! | TATATTGCCTATTATAATAC+AGG | + | chr4_2:65048022-65048041 | None:intergenic | 20.0% |
| !! | TTTAACATATTTCAGATTAC+CGG | + | chr4_2:65048257-65048276 | None:intergenic | 20.0% |
| !! | ATATTATGTTTCTTCATCAA+TGG | + | chr4_2:65048463-65048482 | None:intergenic | 20.0% |
| !! | TGTTATAAGTAGTTTAATAC+CGG | - | chr4_2:65049440-65049459 | Msa0615570:intron | 20.0% |
| !!! | TTTTTCATTAAAGTGAGATA+AGG | - | chr4_2:65049885-65049904 | Msa0615570:CDS | 20.0% |
| ! | AAAAATCATGCATAGAAGAA+AGG | - | chr4_2:65047592-65047611 | Msa0615570:three_prime_UTR | 25.0% |
| ! | GACCAGTCTTTATAAAAAAA+AGG | - | chr4_2:65047715-65047734 | Msa0615570:three_prime_UTR | 25.0% |
| !!! | AGCCTTTTTTTTATAAAGAC+TGG | + | chr4_2:65047720-65047739 | None:intergenic | 25.0% |
| ! | TTAAAAATGTGTATCTCACA+GGG | + | chr4_2:65048321-65048340 | None:intergenic | 25.0% |
| ! | CATACAAATTTCTTTATGGT+GGG | + | chr4_2:65049384-65049403 | None:intergenic | 25.0% |
| ! | ACTGCATACAAATTTCTTTA+TGG | + | chr4_2:65049388-65049407 | None:intergenic | 25.0% |
| ! | AATCTCCTTATAAAACCAAA+CGG | + | chr4_2:65049603-65049622 | None:intergenic | 25.0% |
| ! | AAAGGGAATTAATATCTGAT+TGG | + | chr4_2:65049727-65049746 | None:intergenic | 25.0% |
| ! | AAAGTGTAACAGACATAAAA+GGG | + | chr4_2:65049744-65049763 | None:intergenic | 25.0% |
| ! | TAAAGTGTAACAGACATAAA+AGG | + | chr4_2:65049745-65049764 | None:intergenic | 25.0% |
| !!! | TATTGGTTTTGCTTACTTTC+AGG | - | chr4_2:65047815-65047834 | Msa0615570:intron | 30.0% |
| GAAAAGATATCATCTACGAA+AGG | + | chr4_2:65048129-65048148 | None:intergenic | 30.0% | |
| ! | ATCTTTTCCATGATATGTAC+CGG | - | chr4_2:65048141-65048160 | Msa0615570:intron | 30.0% |
| TCTATCAAAAACCAGATTAC+CGG | + | chr4_2:65048163-65048182 | None:intergenic | 30.0% | |
| ! | TGGTTTTTGATAGAACACTA+TGG | - | chr4_2:65048169-65048188 | Msa0615570:intron | 30.0% |
| TAAAAATGTGTATCTCACAG+GGG | + | chr4_2:65048320-65048339 | None:intergenic | 30.0% | |
| CTTAAAAATGTGTATCTCAC+AGG | + | chr4_2:65048322-65048341 | None:intergenic | 30.0% | |
| TCAGTTGCACATAAACAAAA+TGG | + | chr4_2:65048381-65048400 | None:intergenic | 30.0% | |
| TTATGTTTCTTCATCAATGG+TGG | + | chr4_2:65048460-65048479 | None:intergenic | 30.0% | |
| GAAATGTAGAACATAAGACA+CGG | + | chr4_2:65048487-65048506 | None:intergenic | 30.0% | |
| TATGTGCATCACATTACAAT+AGG | - | chr4_2:65048522-65048541 | Msa0615570:intron | 30.0% | |
| !! | TATTGAAGAGGTGCTTAATT+TGG | + | chr4_2:65048581-65048600 | None:intergenic | 30.0% |
| AATATAGGTGGTTCAGATAT+GGG | + | chr4_2:65048606-65048625 | None:intergenic | 30.0% | |
| AAATATAGGTGGTTCAGATA+TGG | + | chr4_2:65048607-65048626 | None:intergenic | 30.0% | |
| TTCAAGATTGGTGCAAATAT+AGG | + | chr4_2:65048621-65048640 | None:intergenic | 30.0% | |
| CAGAAATGTCTATCAAATGA+TGG | + | chr4_2:65048810-65048829 | None:intergenic | 30.0% | |
| TAACAAAATCTTGAAGTCTC+AGG | + | chr4_2:65048872-65048891 | None:intergenic | 30.0% | |
| GTTAATTCTTCAACAGTTGA+AGG | - | chr4_2:65048888-65048907 | Msa0615570:intron | 30.0% | |
| TTTCCATGTTTATCCATCAA+TGG | - | chr4_2:65049058-65049077 | Msa0615570:intron | 30.0% | |
| ! | ATTCCATTGATGGATAAACA+TGG | + | chr4_2:65049064-65049083 | None:intergenic | 30.0% |
| TTTATCCATCAATGGAATGT+TGG | - | chr4_2:65049066-65049085 | Msa0615570:intron | 30.0% | |
| TTCAACAGAATTCAAATGTC+TGG | - | chr4_2:65049175-65049194 | Msa0615570:intron | 30.0% | |
| TCAACAGAATTCAAATGTCT+GGG | - | chr4_2:65049176-65049195 | Msa0615570:intron | 30.0% | |
| AGTATTAGGAAAACTTCTGA+AGG | - | chr4_2:65049205-65049224 | Msa0615570:intron | 30.0% | |
| GTATTAGGAAAACTTCTGAA+GGG | - | chr4_2:65049206-65049225 | Msa0615570:intron | 30.0% | |
| ! | TATTAGGAAAACTTCTGAAG+GGG | - | chr4_2:65049207-65049226 | Msa0615570:intron | 30.0% |
| TTCATCCAAAACAAGACTAT+TGG | + | chr4_2:65049325-65049344 | None:intergenic | 30.0% | |
| GCATACAAATTTCTTTATGG+TGG | + | chr4_2:65049385-65049404 | None:intergenic | 30.0% | |
| TTCAACATTTGAGCATTCAG+TGG | - | chr4_2:65047556-65047575 | Msa0615570:three_prime_UTR | 35.0% | |
| AATCATGCATAGAAGAAAGG+AGG | - | chr4_2:65047595-65047614 | Msa0615570:three_prime_UTR | 35.0% | |
| ATGTTATGCCCTGATTCATT+TGG | - | chr4_2:65047765-65047784 | Msa0615570:CDS | 35.0% | |
| TTTCAGGCTATCAAGAACAT+TGG | - | chr4_2:65047831-65047850 | Msa0615570:intron | 35.0% | |
| TTCAGGCTATCAAGAACATT+GGG | - | chr4_2:65047832-65047851 | Msa0615570:intron | 35.0% | |
| !! | GACACTATAAAAGTGCTATC+TGG | - | chr4_2:65047936-65047955 | Msa0615570:intron | 35.0% |
| CTCAATTGTATGCACTGAAT+TGG | + | chr4_2:65048556-65048575 | None:intergenic | 35.0% | |
| CAGATATGGGTTTATTGAAG+AGG | + | chr4_2:65048593-65048612 | None:intergenic | 35.0% | |
| AAGATTGGTGCAAATATAGG+TGG | + | chr4_2:65048618-65048637 | None:intergenic | 35.0% | |
| TCTGCATTTAGTGCTCAATT+TGG | + | chr4_2:65048657-65048676 | None:intergenic | 35.0% | |
| TCTGAAGATGTTTCTTGGAT+GGG | + | chr4_2:65048725-65048744 | None:intergenic | 35.0% | |
| ! | TTCTGAAGATGTTTCTTGGA+TGG | + | chr4_2:65048726-65048745 | None:intergenic | 35.0% |
| ! | GCATTTCTGAAGATGTTTCT+TGG | + | chr4_2:65048730-65048749 | None:intergenic | 35.0% |
| ! | TGATGGTGTTGGAATAATGA+GGG | + | chr4_2:65048793-65048812 | None:intergenic | 35.0% |
| ! | ATGATGGTGTTGGAATAATG+AGG | + | chr4_2:65048794-65048813 | None:intergenic | 35.0% |
| ! | TGTCTATCAAATGATGGTGT+TGG | + | chr4_2:65048804-65048823 | None:intergenic | 35.0% |
| CAACAGAATTCAAATGTCTG+GGG | - | chr4_2:65049177-65049196 | Msa0615570:intron | 35.0% | |
| TGAACTATGTATCTCAACGT+GGG | - | chr4_2:65049240-65049259 | Msa0615570:intron | 35.0% | |
| !!! | AGCTTCCAATAGTCTTGTTT+TGG | - | chr4_2:65049317-65049336 | Msa0615570:intron | 35.0% |
| AATCCTTTAATACCACCGTT+TGG | - | chr4_2:65049585-65049604 | Msa0615570:intron | 35.0% | |
| AAACCAAACGGTGGTATTAA+AGG | + | chr4_2:65049591-65049610 | None:intergenic | 35.0% | |
| !!! | TACCACCGTTTGGTTTTATA+AGG | - | chr4_2:65049595-65049614 | Msa0615570:intron | 35.0% |
| AGTTATGCACATCATAACCA+AGG | + | chr4_2:65049665-65049684 | None:intergenic | 35.0% | |
| TGATGTGCATAACTGTTCAT+TGG | - | chr4_2:65049671-65049690 | Msa0615570:CDS | 35.0% | |
| ! | GCTACAATTTAACTTCCTTC+TGG | + | chr4_2:65049796-65049815 | None:intergenic | 35.0% |
| TTATTTAAGCCTGCATATGC+AGG | + | chr4_2:65049929-65049948 | None:intergenic | 35.0% | |
| TGTTCTACAGCACAACAACT+TGG | - | chr4_2:65047620-65047639 | Msa0615570:three_prime_UTR | 40.0% | |
| TGGTACTGTAATTTCCAACC+CGG | - | chr4_2:65047679-65047698 | Msa0615570:three_prime_UTR | 40.0% | |
| AACCACTGCAAAGTTACAAC+TGG | + | chr4_2:65047909-65047928 | None:intergenic | 40.0% | |
| CAGATTACCGGTACATATCA+TGG | + | chr4_2:65048151-65048170 | None:intergenic | 40.0% | |
| ! | CATGATATGTACCGGTAATC+TGG | - | chr4_2:65048149-65048168 | Msa0615570:intron | 40.0% |
| ! | CTTGGTTGTTGTTGTTGTAC+CGG | - | chr4_2:65048235-65048254 | Msa0615570:intron | 40.0% |
| CTGAAATATGGTGAGTGGAA+TGG | + | chr4_2:65048692-65048711 | None:intergenic | 40.0% | |
| ATCTTCAGAAATGCATGTCC+TGG | - | chr4_2:65048736-65048755 | Msa0615570:intron | 40.0% | |
| ! | GATGGTGTTGGAATAATGAG+GGG | + | chr4_2:65048792-65048811 | None:intergenic | 40.0% |
| TGGATCTAGTCTGATAAGCT+GGG | + | chr4_2:65048842-65048861 | None:intergenic | 40.0% | |
| ATGGATCTAGTCTGATAAGC+TGG | + | chr4_2:65048843-65048862 | None:intergenic | 40.0% | |
| AAATCTTGAAGTCTCAGGCA+AGG | + | chr4_2:65048867-65048886 | None:intergenic | 40.0% | |
| ! | TTCAACAGTTGAAGGCATGT+AGG | - | chr4_2:65048896-65048915 | Msa0615570:intron | 40.0% |
| GTAACTCCAAATCTCTGTTG+TGG | + | chr4_2:65048936-65048955 | None:intergenic | 40.0% | |
| ACTTGCATAAGGTGTACATC+AGG | - | chr4_2:65049005-65049024 | Msa0615570:intron | 40.0% | |
| CTTGCATAAGGTGTACATCA+GGG | - | chr4_2:65049006-65049025 | Msa0615570:intron | 40.0% | |
| GGCGAAGTTAACATTGTACT+TGG | - | chr4_2:65049087-65049106 | Msa0615570:intron | 40.0% | |
| ! | TGTCTGGGGTGTTTAGTATT+AGG | - | chr4_2:65049191-65049210 | Msa0615570:intron | 40.0% |
| GTGAACTATGTATCTCAACG+TGG | - | chr4_2:65049239-65049258 | Msa0615570:intron | 40.0% | |
| TGGAAGCTAAGCATGAAACT+AGG | + | chr4_2:65049305-65049324 | None:intergenic | 40.0% | |
| AAGTAGTTTAATACCGGACC+TGG | - | chr4_2:65049446-65049465 | Msa0615570:intron | 40.0% | |
| AGTAGTTTAATACCGGACCT+GGG | - | chr4_2:65049447-65049466 | Msa0615570:intron | 40.0% | |
| CTCCTTATAAAACCAAACGG+TGG | + | chr4_2:65049600-65049619 | None:intergenic | 40.0% | |
| ! | ATAGAGAGCACACATACACT+TGG | + | chr4_2:65049632-65049651 | None:intergenic | 40.0% |
| TCTCTATGCATACACTACCT+TGG | - | chr4_2:65049645-65049664 | Msa0615570:CDS | 40.0% | |
| TTACACTTTAGCCCTACTAG+TGG | - | chr4_2:65049755-65049774 | Msa0615570:intron | 40.0% | |
| !!! | TTTTTTCCTGTCCAAGCTCA+TGG | - | chr4_2:65049969-65049988 | Msa0615570:CDS | 40.0% |
| ! | TTTTTCCTGTCCAAGCTCAT+GGG | - | chr4_2:65049970-65049989 | Msa0615570:CDS | 40.0% |
| AAAGGCTGAATCTGCTATGC+AGG | - | chr4_2:65047733-65047752 | Msa0615570:exon | 45.0% | |
| ! | CCTAGAAGTGCAATGCGAAT+AGG | + | chr4_2:65047885-65047904 | None:intergenic | 45.0% |
| CCTATTCGCATTGCACTTCT+AGG | - | chr4_2:65047882-65047901 | Msa0615570:intron | 45.0% | |
| GACCAGTTGTAACTTTGCAG+TGG | - | chr4_2:65047904-65047923 | Msa0615570:intron | 45.0% | |
| ! | AAGCCTTATCCCACTAAGTG+GGG | + | chr4_2:65048218-65048237 | None:intergenic | 45.0% |
| ! | CAAGCCTTATCCCACTAAGT+GGG | + | chr4_2:65048219-65048238 | None:intergenic | 45.0% |
| !! | CTCAATTTGGTGCTGCATAG+GGG | + | chr4_2:65048644-65048663 | None:intergenic | 45.0% |
| !! | GCTCAATTTGGTGCTGCATA+GGG | + | chr4_2:65048645-65048664 | None:intergenic | 45.0% |
| !! | TGCTCAATTTGGTGCTGCAT+AGG | + | chr4_2:65048646-65048665 | None:intergenic | 45.0% |
| ! | TGGTGCTGAAATATGGTGAG+TGG | + | chr4_2:65048697-65048716 | None:intergenic | 45.0% |
| CACCATATTTCAGCACCAAC+AGG | - | chr4_2:65048699-65048718 | Msa0615570:intron | 45.0% | |
| CAGAAATGCATGTCCTGGTT+AGG | - | chr4_2:65048741-65048760 | Msa0615570:intron | 45.0% | |
| GAATAATGAGGGGCCACTAA+TGG | + | chr4_2:65048782-65048801 | None:intergenic | 45.0% | |
| TTGAAGTCTCAGGCAAGGAA+TGG | + | chr4_2:65048862-65048881 | None:intergenic | 45.0% | |
| ! | AAATCTCTGTTGTGGTGCCA+TGG | + | chr4_2:65048928-65048947 | None:intergenic | 45.0% |
| ATGGCACCACAACAGAGATT+TGG | - | chr4_2:65048927-65048946 | Msa0615570:intron | 45.0% | |
| GTACATCAGGGAATCCGATT+TGG | - | chr4_2:65049018-65049037 | Msa0615570:intron | 45.0% | |
| !! | GGAATCCGATTTGGAGTTGA+GGG | - | chr4_2:65049027-65049046 | Msa0615570:intron | 45.0% |
| ATCAGCCCTCAACTCCAAAT+CGG | + | chr4_2:65049035-65049054 | None:intergenic | 45.0% | |
| CTTCGCCAACATTCCATTGA+TGG | + | chr4_2:65049074-65049093 | None:intergenic | 45.0% | |
| GGTAGTGACTATACTGCAGT+CGG | - | chr4_2:65049486-65049505 | Msa0615570:intron | 45.0% | |
| TTGCAAGTCCTCCACTAGTA+GGG | + | chr4_2:65049769-65049788 | None:intergenic | 45.0% | |
| AGCTTGTGCTCAAGTATCTG+TGG | - | chr4_2:65049813-65049832 | Msa0615570:CDS | 45.0% | |
| CTGTTCAAACCTGCATATGC+AGG | - | chr4_2:65049917-65049936 | Msa0615570:CDS | 45.0% | |
| ! | TTTTCCTGTCCAAGCTCATG+GGG | - | chr4_2:65049971-65049990 | Msa0615570:CDS | 45.0% |
| TGCTTAGCAGCCTATACAGC+TGG | - | chr4_2:65047650-65047669 | Msa0615570:three_prime_UTR | 50.0% | |
| ACCAACAGCACCAGCTGTAT+AGG | + | chr4_2:65047663-65047682 | None:intergenic | 50.0% | |
| TGGTCATGACATTGTCAGCC+GGG | + | chr4_2:65047700-65047719 | None:intergenic | 50.0% | |
| CTGGTCATGACATTGTCAGC+CGG | + | chr4_2:65047701-65047720 | None:intergenic | 50.0% | |
| GCTGAATCTGCTATGCAGGT+AGG | - | chr4_2:65047737-65047756 | Msa0615570:exon | 50.0% | |
| CTTATCCCACTAAGTGGGGT+CGG | + | chr4_2:65048214-65048233 | None:intergenic | 50.0% | |
| ! | CCAAGCCTTATCCCACTAAG+TGG | + | chr4_2:65048220-65048239 | None:intergenic | 50.0% |
| CCACTTAGTGGGATAAGGCT+TGG | - | chr4_2:65048217-65048236 | Msa0615570:intron | 50.0% | |
| GCTGCATAGGGGTTCAAGAT+TGG | + | chr4_2:65048633-65048652 | None:intergenic | 50.0% | |
| !! | GGCCTGTTGGTGCTGAAATA+TGG | + | chr4_2:65048704-65048723 | None:intergenic | 50.0% |
| TGTTTCTTGGATGGGCCTGT+TGG | + | chr4_2:65048717-65048736 | None:intergenic | 50.0% | |
| ! | TCTGGGGTTGAATCCTAACC+AGG | + | chr4_2:65048757-65048776 | None:intergenic | 50.0% |
| TCAACCCCAGATGCCATTAG+TGG | - | chr4_2:65048766-65048785 | Msa0615570:intron | 50.0% | |
| !! | GGGAATCCGATTTGGAGTTG+AGG | - | chr4_2:65049026-65049045 | Msa0615570:intron | 50.0% |
| ATACTGCAGTCGGTCACATC+TGG | - | chr4_2:65049496-65049515 | Msa0615570:intron | 50.0% | |
| CTGGACTGTCCGATCAAGAT+CGG | - | chr4_2:65049515-65049534 | Msa0615570:intron | 50.0% | |
| ACTGTCCGATCAAGATCGGA+CGG | - | chr4_2:65049519-65049538 | Msa0615570:intron | 50.0% | |
| CTAGACCGTCCGATCTTGAT+CGG | + | chr4_2:65049527-65049546 | None:intergenic | 50.0% | |
| CACTTTAGCCCTACTAGTGG+AGG | - | chr4_2:65049758-65049777 | Msa0615570:intron | 50.0% | |
| CTTGCAAGTCCTCCACTAGT+AGG | + | chr4_2:65049770-65049789 | None:intergenic | 50.0% | |
| AGGACTTGCAAGAGACCAGA+AGG | - | chr4_2:65049778-65049797 | Msa0615570:intron | 50.0% | |
| AGCGTGGTGGTTTGATCTTG+TGG | - | chr4_2:65049836-65049855 | Msa0615570:CDS | 50.0% | |
| GCGTGGTGGTTTGATCTTGT+GGG | - | chr4_2:65049837-65049856 | Msa0615570:CDS | 50.0% | |
| AAATCCCCATGAGCTTGGAC+AGG | + | chr4_2:65049978-65049997 | None:intergenic | 50.0% | |
| CGAACAAATCCCCATGAGCT+TGG | + | chr4_2:65049983-65050002 | None:intergenic | 50.0% | |
| !! | GCCTATACAGCTGGTGCTGT+TGG | - | chr4_2:65047659-65047678 | Msa0615570:three_prime_UTR | 55.0% |
| CATGACATTGTCAGCCGGGT+TGG | + | chr4_2:65047696-65047715 | None:intergenic | 55.0% | |
| ACTAAGTGGGGTCGGCTACA+TGG | + | chr4_2:65048206-65048225 | None:intergenic | 55.0% | |
| ATGTAGCCGACCCCACTTAG+TGG | - | chr4_2:65048205-65048224 | Msa0615570:intron | 55.0% | |
| TGTAGCCGACCCCACTTAGT+GGG | - | chr4_2:65048206-65048225 | Msa0615570:intron | 55.0% | |
| CGACCCCACTTAGTGGGATA+AGG | - | chr4_2:65048212-65048231 | Msa0615570:intron | 55.0% | |
| AGGGGCCACTAATGGCATCT+GGG | + | chr4_2:65048774-65048793 | None:intergenic | 55.0% | |
| AGGCATGTAGGTTCCCACCA+TGG | - | chr4_2:65048908-65048927 | Msa0615570:intron | 55.0% | |
| !! | CTCTGTTGTGGTGCCATGGT+GGG | + | chr4_2:65048924-65048943 | None:intergenic | 55.0% |
| !! | TCTCTGTTGTGGTGCCATGG+TGG | + | chr4_2:65048925-65048944 | None:intergenic | 55.0% |
| GCTCAAGTATCTGTGGAGCG+TGG | - | chr4_2:65049820-65049839 | Msa0615570:CDS | 55.0% | |
| CAAGTATCTGTGGAGCGTGG+TGG | - | chr4_2:65049823-65049842 | Msa0615570:CDS | 55.0% | |
| GGGGCCACTAATGGCATCTG+GGG | + | chr4_2:65048773-65048792 | None:intergenic | 60.0% | |
| GAGGGGCCACTAATGGCATC+TGG | + | chr4_2:65048775-65048794 | None:intergenic | 60.0% | |
| GACTGCACACAACCCAGGTC+CGG | + | chr4_2:65049462-65049481 | None:intergenic | 60.0% | |
| GGACCTGGGTTGTGTGCAGT+CGG | - | chr4_2:65049461-65049480 | Msa0615570:intron | 60.0% | |
| GACCTGGGTTGTGTGCAGTC+GGG | - | chr4_2:65049462-65049481 | Msa0615570:intron | 60.0% | |
| CTCCCGACTGCACACAACCC+AGG | + | chr4_2:65049467-65049486 | None:intergenic | 65.0% | |
| CTGGGTTGTGTGCAGTCGGG+AGG | - | chr4_2:65049465-65049484 | Msa0615570:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 65047545 | 65050019 | 65047545 | ID=Msa0615570;Name=Msa0615570 |
| chr4_2 | mRNA | 65047545 | 65050019 | 65047545 | ID=Msa0615570-mRNA-1;Parent=Msa0615570;Name=Msa0615570-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|1|0.66|1|0.5|0.66|3|205|127 |
| chr4_2 | exon | 65047545 | 65047798 | 65047545 | ID=Msa0615570-mRNA-1:exon:18357;Parent=Msa0615570-mRNA-1 |
| chr4_2 | exon | 65049603 | 65049727 | 65049603 | ID=Msa0615570-mRNA-1:exon:18356;Parent=Msa0615570-mRNA-1 |
| chr4_2 | exon | 65049810 | 65050019 | 65049810 | ID=Msa0615570-mRNA-1:exon:18355;Parent=Msa0615570-mRNA-1 |
| chr4_2 | CDS | 65049810 | 65050019 | 65049810 | ID=Msa0615570-mRNA-1:cds;Parent=Msa0615570-mRNA-1 |
| chr4_2 | CDS | 65049603 | 65049727 | 65049603 | ID=Msa0615570-mRNA-1:cds;Parent=Msa0615570-mRNA-1 |
| chr4_2 | CDS | 65047750 | 65047798 | 65047750 | ID=Msa0615570-mRNA-1:cds;Parent=Msa0615570-mRNA-1 |
| chr4_2 | three_prime_UTR | 65047545 | 65047749 | 65047545 | ID=Msa0615570-mRNA-1:three_prime_utr;Parent=Msa0615570-mRNA-1 |
| Gene Sequence |
| Protein sequence |
