AlfalfaGEDB | Msa0199880

M. sativa cultivar zhongmu-4 / Msa0199880

KEGG: K03017
GO: GO:0000418 GO:0000419 GO:0000428 GO:0001192 GO:0001193 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005665 GO:0006139 GO:0006259 GO:0006281 GO:0006283 GO:0006289 GO:0006304 GO:0006305 GO:0006306 GO:0006351 GO:0006352 GO:0006354 GO:0006366 GO:0006367 GO:0006368 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016458 GO:0016591 GO:0018130 GO:0019222 GO:0019438 GO:0030880 GO:0031047 GO:0031974 GO:0031981 GO:0032259 GO:0032774 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044728 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0071704 GO:0080188 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234
PFAM: PF02150.19

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0199880	XP_003594777.1	100.000	114	0	0	1	114	1	114	2.14e-80	241

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0199880	sp\|Q6NLH0\|RPB9A_ARATH	88.596	114	13	0	1	114	1	114	2.17e-75	221

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0199880	Q2HU21	100.000	114	0	0	1	114	1	114	1.02e-80	241

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001450	Msa0199880	0.859470	4.045139e-63	-8.615850e-47
Msa0002490	Msa0199880	0.807157	5.797471e-50	-8.615850e-47
Msa0002750	Msa0199880	0.803004	4.287544e-49	-8.615850e-47
Msa0003700	Msa0199880	0.817326	3.493905e-52	-8.615850e-47
Msa0003720	Msa0199880	0.822097	2.841852e-53	-8.615850e-47
Msa0003780	Msa0199880	0.813692	2.250126e-51	-8.615850e-47
Msa0004860	Msa0199880	0.806175	9.347177e-50	-8.615850e-47
Msa0004980	Msa0199880	0.833097	6.486428e-56	-8.615850e-47
Msa0008090	Msa0199880	0.831116	2.003419e-55	-8.615850e-47
Msa0008410	Msa0199880	0.827279	1.707495e-54	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0199880	MtrunA17_Chr2g0294631	100.000	114	0	0	1	114	1	114	1.97e-84	241

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa0199880	AT3G16980.1	88.596	114	13	1	114	1	114	2.21e-76	221
Msa0199880	AT4G16265.1	87.719	114	14	1	114	1	114	3.00e-76	221
Msa0199880	AT4G16265.2	86.538	104	14	11	114	30	133	2.71e-68	201

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Find 58 sgRNAs with CRISPR-Local

Find 175 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ACAAAACTCAGTCTCTCCAG+CGG	0.698214	2_1:+19297030	None:intergenic
ACCCAAACTGTGGGCACCGC+TGG	0.429710	2_1:-19297046	Msa0199880:CDS
ACTTGAGGGGTGGGGAAATG+TGG	0.445583	2_1:-19296751	Msa0199880:three_prime_UTR
AGATGAGTTGAACCTTGATT+TGG	0.294045	2_1:+19297001	None:intergenic
AGATTGGAAAGGAGAGAAGT+GGG	0.444912	2_1:-19299521	Msa0199880:five_prime_UTR
AGTATTGATGTAAGAGAGAT+TGG	0.372645	2_1:-19299537	None:intergenic
AGTTGAACCTTGATTTGGGC+AGG	0.503093	2_1:+19297006	None:intergenic
ATTAATGGACAAATCCTTGC+GGG	0.400157	2_1:-19296824	Msa0199880:three_prime_UTR
CAGAGAAGAGAGTGTGAGTT+AGG	0.372689	2_1:-19299474	Msa0199880:five_prime_UTR
CAGCGAACAGCCTTGGTGCG+AGG	0.628441	2_1:+19298509	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAACAACATTCTATACCCTA+AGG	-	chr2_1:19296805-19296824	Msa0199880:three_prime_UTR	30.0%
TTTATACACGGCAATGATTT+GGG	+	chr2_1:19296901-19296920	None:intergenic	30.0%
TTAAGCTATTTATCCCAACA+AGG	+	chr2_1:19297201-19297220	None:intergenic	30.0%
CAAATATTATGGAGAGCTTA+TGG	-	chr2_1:19297336-19297355	Msa0199880:intron	30.0%
TCACAAGTACTTATCATAGT+AGG	-	chr2_1:19297423-19297442	Msa0199880:intron	30.0%
TTCACTTCTTCACAAACTAA+GGG	+	chr2_1:19297904-19297923	None:intergenic	30.0%
ATTCACTTCTTCACAAACTA+AGG	+	chr2_1:19297905-19297924	None:intergenic	30.0%
AGAAGTGAATCTTAGAAAGA+AGG	-	chr2_1:19297915-19297934	Msa0199880:intron	30.0%
ACAAGATAACGACAATAGAA+AGG	+	chr2_1:19298240-19298259	None:intergenic	30.0%
TAGAACCATGAACACTAAAA+TGG	+	chr2_1:19298344-19298363	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_1	gene	19296596	19299548	19296596	ID=Msa0199880;Name=Msa0199880
chr2_1	mRNA	19296596	19299548	19296596	ID=Msa0199880-mRNA-1;Parent=Msa0199880;Name=Msa0199880-mRNA-1;_AED=0.05;_eAED=0.05;_QI=104\|1\|1\|1\|1\|1\|4\|441\|114
chr2_1	exon	19296596	19297117	19296596	ID=Msa0199880-mRNA-1:exon:8086;Parent=Msa0199880-mRNA-1
chr2_1	exon	19298472	19298630	19298472	ID=Msa0199880-mRNA-1:exon:8085;Parent=Msa0199880-mRNA-1
chr2_1	exon	19299264	19299339	19299264	ID=Msa0199880-mRNA-1:exon:8084;Parent=Msa0199880-mRNA-1
chr2_1	exon	19299416	19299548	19299416	ID=Msa0199880-mRNA-1:exon:8083;Parent=Msa0199880-mRNA-1
chr2_1	five_prime_UTR	19299445	19299548	19299445	ID=Msa0199880-mRNA-1:five_prime_utr;Parent=Msa0199880-mRNA-1
chr2_1	CDS	19299416	19299444	19299416	ID=Msa0199880-mRNA-1:cds;Parent=Msa0199880-mRNA-1
chr2_1	CDS	19299264	19299339	19299264	ID=Msa0199880-mRNA-1:cds;Parent=Msa0199880-mRNA-1
chr2_1	CDS	19298472	19298630	19298472	ID=Msa0199880-mRNA-1:cds;Parent=Msa0199880-mRNA-1
chr2_1	CDS	19297037	19297117	19297037	ID=Msa0199880-mRNA-1:cds;Parent=Msa0199880-mRNA-1
chr2_1	three_prime_UTR	19296596	19297036	19296596	ID=Msa0199880-mRNA-1:three_prime_utr;Parent=Msa0199880-mRNA-1

Gene Sequence	>Msa0199880 ATGAGTACCATGAAGTTTTGCCGTGAATGTAACAACATTCTATACCCTAAGGAAGACAGAGAACAGAAAATTCTCCTCTACGCTTGCCGTAATTGCGATCACCAGGAGGCAGCTGATAACTTCTGTGTCTACAGAAATGAGATTCACCACTCTGTTGCTGAGCGGACTCAAGTGTTGCAGGATGTAGCTGCAGATCCAACTCTTCCTCGCACCAAGGCTGTTCGCTGTGTTCAATGCAATCATGGTGAAGCTGTGTTTTTCCAGGCAACTGCTAGAGGCGAGGAAGGAATGACACTTTTCTTCGTTTGCTGCAACCCAAACTGTGGGCACCGCTGGAGAGACTGA
Protein sequence	>Msa0199880 MSTMKFCRECNNILYPKEDREQKILLYACRNCDHQEAADNFCVYRNEIHHSVAERTQVLQDVAADPTLPRTKAVRCVQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD*