AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0199880


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0199880 MtrunA17_Chr2g0294631 100.000 114 0 0 1 114 1 114 1.97e-84 241
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0199880 AT3G16980.1 88.596 114 13 0 1 114 1 114 2.21e-76 221
Msa0199880 AT4G16265.1 87.719 114 14 0 1 114 1 114 3.00e-76 221
Msa0199880 AT4G16265.2 86.538 104 14 0 11 114 30 133 2.71e-68 201

Find 58 sgRNAs with CRISPR-Local

Find 175 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGAGATAGTATTTGTTTAT+AGG 0.188566 2_1:-19296699 Msa0199880:three_prime_UTR
GTTTCTTATTAAACGCTTAT+TGG 0.227999 2_1:-19296677 Msa0199880:three_prime_UTR
TCAAGGTTCAACTCATCTTT+TGG 0.241483 2_1:-19296996 Msa0199880:three_prime_UTR
TTAACAAACCAAGGAAATTC+AGG 0.273601 2_1:+19296773 None:intergenic
AGATGAGTTGAACCTTGATT+TGG 0.294045 2_1:+19297001 None:intergenic
TTCTGTTCTCTGTCTTCCTT+AGG 0.297432 2_1:+19299301 None:intergenic
CTCCAGCGGTGCCCACAGTT+TGG 0.305887 2_1:+19297044 None:intergenic
TCCAGCGGTGCCCACAGTTT+GGG 0.321240 2_1:+19297045 None:intergenic
GTTGTCGATCAAATGATTAA+TGG 0.343308 2_1:-19296839 Msa0199880:three_prime_UTR
AGTATTGATGTAAGAGAGAT+TGG 0.372645 2_1:-19299537 None:intergenic
CAGAGAAGAGAGTGTGAGTT+AGG 0.372689 2_1:-19299474 Msa0199880:five_prime_UTR
GAACCTGGTGATCGCAATTA+CGG 0.380587 2_1:+19299260 None:intergenic
TGGTACTCATCTTGTCTTGT+TGG 0.380839 2_1:+19299435 None:intergenic
TCCTTGGTTTGTTAACTTGA+GGG 0.394399 2_1:-19296765 Msa0199880:three_prime_UTR
GATGAGTTGAACCTTGATTT+GGG 0.399692 2_1:+19297002 None:intergenic
ATTAATGGACAAATCCTTGC+GGG 0.400157 2_1:-19296824 Msa0199880:three_prime_UTR
TCTCTAATCTGTGTTAAAAC+AGG 0.413002 2_1:+19296890 None:intergenic
TGAGCGGACTCAAGTGTTGC+AGG 0.420762 2_1:-19298555 Msa0199880:CDS
TTCCTTGGTTTGTTAACTTG+AGG 0.421678 2_1:-19296766 Msa0199880:three_prime_UTR
GGGGAAATGTGGAATCAAAA+TGG 0.422261 2_1:-19296740 Msa0199880:three_prime_UTR
TGGATGGCCCTGAATTTCCT+TGG 0.426978 2_1:-19296781 Msa0199880:three_prime_UTR
CCATTCACGGCAAAACTTCA+TGG 0.428840 2_1:+19299415 None:intergenic
ACCCAAACTGTGGGCACCGC+TGG 0.429710 2_1:-19297046 Msa0199880:CDS
TCTGTTCTCTGTCTTCCTTA+GGG 0.436557 2_1:+19299302 None:intergenic
AGATTGGAAAGGAGAGAAGT+GGG 0.444912 2_1:-19299521 Msa0199880:five_prime_UTR
ACTTGAGGGGTGGGGAAATG+TGG 0.445583 2_1:-19296751 Msa0199880:three_prime_UTR
GTTTGTTAACTTGAGGGGTG+GGG 0.461288 2_1:-19296759 Msa0199880:three_prime_UTR
GGTTTGTTAACTTGAGGGGT+GGG 0.465641 2_1:-19296760 Msa0199880:three_prime_UTR
TCGACAACTATAGTTAAAAC+AGG 0.482635 2_1:+19296854 None:intergenic
GAGTAGAAACGAACCATTCA+CGG 0.485823 2_1:+19299402 None:intergenic
GCCTTGGTGCGAGGAAGAGT+TGG 0.493325 2_1:+19298518 None:intergenic
TGGTTTGTTAACTTGAGGGG+TGG 0.496225 2_1:-19296761 Msa0199880:three_prime_UTR
AGTTGAACCTTGATTTGGGC+AGG 0.503093 2_1:+19297006 None:intergenic
CCTTGGTTTGTTAACTTGAG+GGG 0.505784 2_1:-19296764 Msa0199880:three_prime_UTR
TTGCCGTAATTGCGATCACC+AGG 0.509869 2_1:-19299263 Msa0199880:intron
CGCAATTACGGCAAGCGTAG+AGG 0.511532 2_1:+19299272 None:intergenic
GAGATTGGAAAGGAGAGAAG+TGG 0.517620 2_1:-19299522 Msa0199880:five_prime_UTR
CGCTGTGTTCAATGCAATCA+TGG 0.530121 2_1:-19298491 Msa0199880:CDS
TTGAACACAGCGAACAGCCT+TGG 0.548593 2_1:+19298502 None:intergenic
TAACAAACCAAGGAAATTCA+GGG 0.550436 2_1:+19296774 None:intergenic
GCAACTGCTAGAGGCGAGGA+AGG 0.564765 2_1:-19297095 Msa0199880:CDS
TGGAAAGGAGAGAAGTGGGA+GGG 0.565257 2_1:-19299517 Msa0199880:five_prime_UTR
CTCATTATGTTGTCCACTCT+AGG 0.568474 2_1:-19296962 Msa0199880:three_prime_UTR
TTGGAAAGGAGAGAAGTGGG+AGG 0.571142 2_1:-19299518 Msa0199880:five_prime_UTR
GTTTGCTGCAACCCAAACTG+TGG 0.577890 2_1:-19297056 Msa0199880:CDS
TAACAACATTCTATACCCTA+AGG 0.583949 2_1:-19299317 Msa0199880:CDS
TTTGCTGCAACCCAAACTGT+GGG 0.598453 2_1:-19297055 Msa0199880:CDS
TTTCAGCATGACAACCCGCA+AGG 0.607032 2_1:+19296810 None:intergenic
CCCCTCAAGTTAACAAACCA+AGG 0.612225 2_1:+19296764 None:intergenic
CATATGCAGGCAACTGCTAG+AGG 0.615188 2_1:-19297104 Msa0199880:intron
TGATGTAAGAGAGATTGGAA+AGG 0.618553 2_1:-19299532 None:intergenic
CAGCGAACAGCCTTGGTGCG+AGG 0.628441 2_1:+19298509 None:intergenic
GCAGGCAACTGCTAGAGGCG+AGG 0.653952 2_1:-19297099 Msa0199880:intron
GATTAATGGACAAATCCTTG+CGG 0.658484 2_1:-19296825 Msa0199880:three_prime_UTR
TCCAACTCTTCCTCGCACCA+AGG 0.666434 2_1:-19298519 Msa0199880:CDS
TTCACCACTCTGTTGCTGAG+CGG 0.687981 2_1:-19298571 Msa0199880:CDS
GAGTCCGCTCAGCAACAGAG+TGG 0.694701 2_1:+19298567 None:intergenic
ACAAAACTCAGTCTCTCCAG+CGG 0.698214 2_1:+19297030 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTAATTTTTTTAAAATT+AGG - chr2_1:19297079-19297098 Msa0199880:CDS 0.0%
!!! AATTAATTTTTTTAAAATTA+GGG - chr2_1:19297080-19297099 Msa0199880:CDS 0.0%
!!! TTATTATATTTTCTTTTTAG+TGG - chr2_1:19298388-19298407 Msa0199880:intron 10.0%
!! ATAAAAAAAAATGGGTAAAA+GGG + chr2_1:19296759-19296778 None:intergenic 15.0%
!! AATAAAAAAAAATGGGTAAA+AGG + chr2_1:19296760-19296779 None:intergenic 15.0%
!! AAACTCAAAAAACAAAAAAT+GGG + chr2_1:19296931-19296950 None:intergenic 15.0%
!!! TTGTTTTCAAACAAATATTA+TGG - chr2_1:19297325-19297344 Msa0199880:intron 15.0%
!!! TAATTTTCCTTTTTTTTTTG+TGG + chr2_1:19298696-19298715 None:intergenic 15.0%
!! AACTCAAAAAACAAAAAATG+GGG + chr2_1:19296930-19296949 None:intergenic 20.0%
!! CAAACTCAAAAAACAAAAAA+TGG + chr2_1:19296932-19296951 None:intergenic 20.0%
!!! CATTTTTTGTTTTTTGAGTT+TGG - chr2_1:19296930-19296949 Msa0199880:three_prime_UTR 20.0%
!! AAATTAGGGTTTAACAATTA+TGG - chr2_1:19297094-19297113 Msa0199880:CDS 20.0%
!! AATTAGGGTTTAACAATTAT+GGG - chr2_1:19297095-19297114 Msa0199880:CDS 20.0%
!!! TTTTTTTTTTTTTTTGAGGG+TGG - chr2_1:19297131-19297150 Msa0199880:intron 20.0%
!! TGTTCTAATTTGATCAATTT+AGG - chr2_1:19297175-19297194 Msa0199880:intron 20.0%
!!! ATAAGCTACTTTTTAACAAA+AGG - chr2_1:19297265-19297284 Msa0199880:intron 20.0%
!!! TTGATTTTTAGAAGTTTTGA+AGG - chr2_1:19297729-19297748 Msa0199880:intron 20.0%
!!! CTTGAGTTTTATATATTTTG+TGG - chr2_1:19297835-19297854 Msa0199880:intron 20.0%
!! AATTCCAATATGAATTGTTT+AGG - chr2_1:19298131-19298150 Msa0199880:intron 20.0%
!! ATTCCAATATGAATTGTTTA+GGG - chr2_1:19298132-19298151 Msa0199880:intron 20.0%
!! AAACCTTATTCTATTACTTA+TGG - chr2_1:19298974-19298993 Msa0199880:intron 20.0%
!!! AATTTTTTATATGCATATGC+AGG - chr2_1:19299005-19299024 Msa0199880:intron 20.0%
!! TTGAGATAGTATTTGTTTAT+AGG - chr2_1:19299423-19299442 Msa0199880:CDS 20.0%
!!! ATGGGGTTTTTTTTTATACA+CGG + chr2_1:19296913-19296932 None:intergenic 25.0%
!!! CATTATTAGCTTATTTTGAG+TGG - chr2_1:19297007-19297026 Msa0199880:three_prime_UTR 25.0%
! GGATAAATAGCTTAATTAAG+TGG - chr2_1:19297206-19297225 Msa0199880:intron 25.0%
!!! ATTTTGACTTTAAAGTAGAG+TGG - chr2_1:19297778-19297797 Msa0199880:intron 25.0%
!! AAAAAACGTATACGTTTTGA+AGG - chr2_1:19297942-19297961 Msa0199880:intron 25.0%
! TAACCCTAAACAATTCATAT+TGG + chr2_1:19298138-19298157 None:intergenic 25.0%
!!! TATTGTCGTTATCTTGTTTT+TGG - chr2_1:19298243-19298262 Msa0199880:intron 25.0%
! TTCTTCACCACAAAAAAAAA+AGG - chr2_1:19298686-19298705 Msa0199880:intron 25.0%
!!! TTTCTTCATTGCTTTTGAAA+GGG + chr2_1:19298891-19298910 None:intergenic 25.0%
!!! ATTTCTTCATTGCTTTTGAA+AGG + chr2_1:19298892-19298911 None:intergenic 25.0%
! AAAATGCATTCATAAGAGTA+GGG + chr2_1:19298925-19298944 None:intergenic 25.0%
! AAAAATGCATTCATAAGAGT+AGG + chr2_1:19298926-19298945 None:intergenic 25.0%
! GATCCATAAGTAATAGAATA+AGG + chr2_1:19298980-19298999 None:intergenic 25.0%
! TTATTAAAAATCGAGTGATG+TGG - chr2_1:19299203-19299222 Msa0199880:intron 25.0%
! TATTAAAAATCGAGTGATGT+GGG - chr2_1:19299204-19299223 Msa0199880:intron 25.0%
!! TTGTCATGCTGAAATTTTTA+TGG - chr2_1:19299321-19299340 Msa0199880:intron 25.0%
! GTTTCTTATTAAACGCTTAT+TGG - chr2_1:19299445-19299464 Msa0199880:five_prime_UTR 25.0%
TAACAACATTCTATACCCTA+AGG - chr2_1:19296805-19296824 Msa0199880:three_prime_UTR 30.0%
TTTATACACGGCAATGATTT+GGG + chr2_1:19296901-19296920 None:intergenic 30.0%
! TTTTATACACGGCAATGATT+TGG + chr2_1:19296902-19296921 None:intergenic 30.0%
!! TTTTGTGTTGCTAAGTTAGA+GGG - chr2_1:19297042-19297061 Msa0199880:CDS 30.0%
TTAAGCTATTTATCCCAACA+AGG + chr2_1:19297201-19297220 None:intergenic 30.0%
CAAATATTATGGAGAGCTTA+TGG - chr2_1:19297336-19297355 Msa0199880:intron 30.0%
TCACAAGTACTTATCATAGT+AGG - chr2_1:19297423-19297442 Msa0199880:intron 30.0%
! TTGTTTGACTAGTTGTTTAC+TGG - chr2_1:19297466-19297485 Msa0199880:intron 30.0%
!!! TGTTGTTGTTTTTGTTGTTC+AGG - chr2_1:19297492-19297511 Msa0199880:intron 30.0%
! GTAGAGTCATAGGAATTTTA+AGG - chr2_1:19297800-19297819 Msa0199880:intron 30.0%
TTCACTTCTTCACAAACTAA+GGG + chr2_1:19297904-19297923 None:intergenic 30.0%
ATTCACTTCTTCACAAACTA+AGG + chr2_1:19297905-19297924 None:intergenic 30.0%
AGAAGTGAATCTTAGAAAGA+AGG - chr2_1:19297915-19297934 Msa0199880:intron 30.0%
! TTTAGGGTTATAAAGTGTCA+CGG - chr2_1:19298148-19298167 Msa0199880:intron 30.0%
ACAAGATAACGACAATAGAA+AGG + chr2_1:19298240-19298259 None:intergenic 30.0%
!! AATCTCCATTTTAGTGTTCA+TGG - chr2_1:19298336-19298355 Msa0199880:intron 30.0%
TAGAACCATGAACACTAAAA+TGG + chr2_1:19298344-19298363 None:intergenic 30.0%
!! ATTTTAGTGTTCATGGTTCT+AGG - chr2_1:19298343-19298362 Msa0199880:intron 30.0%
TAGCGTAAATGAATATACGA+AGG - chr2_1:19298440-19298459 Msa0199880:intron 30.0%
TGAATATACGAAGGTTTCAT+AGG - chr2_1:19298449-19298468 Msa0199880:intron 30.0%
GAATATACGAAGGTTTCATA+GGG - chr2_1:19298450-19298469 Msa0199880:intron 30.0%
AGAATGAGTTTACAGCATAT+AGG + chr2_1:19298580-19298599 None:intergenic 30.0%
GTATCTCTCATATGTTGAAT+AGG - chr2_1:19298600-19298619 Msa0199880:CDS 30.0%
! ATGTTGAATAGGTAACGTTT+TGG - chr2_1:19298611-19298630 Msa0199880:CDS 30.0%
TTTGTGGTGAAGAACTAATT+TGG + chr2_1:19298680-19298699 None:intergenic 30.0%
!! ATATCCACATTACTTTTAGC+GGG + chr2_1:19298812-19298831 None:intergenic 30.0%
!! CATATCCACATTACTTTTAG+CGG + chr2_1:19298813-19298832 None:intergenic 30.0%
AAAAGTAATGTGGATATGTC+AGG - chr2_1:19298815-19298834 Msa0199880:intron 30.0%
!! TTCTTCATTGCTTTTGAAAG+GGG + chr2_1:19298890-19298909 None:intergenic 30.0%
ATTAAAAATCGAGTGATGTG+GGG - chr2_1:19299205-19299224 Msa0199880:intron 30.0%
TCTCTAATCTGTGTTAAAAC+AGG + chr2_1:19299235-19299254 None:intergenic 30.0%
TCGACAACTATAGTTAAAAC+AGG + chr2_1:19299271-19299290 None:intergenic 30.0%
GTTGTCGATCAAATGATTAA+TGG - chr2_1:19299283-19299302 Msa0199880:CDS 30.0%
! CATGCTGAAATTTTTATGGA+TGG - chr2_1:19299325-19299344 Msa0199880:intron 30.0%
TAACAAACCAAGGAAATTCA+GGG + chr2_1:19299351-19299370 None:intergenic 30.0%
TTAACAAACCAAGGAAATTC+AGG + chr2_1:19299352-19299371 None:intergenic 30.0%
!! GAGCAGTGATATTTTAAAGA+GGG + chr2_1:19299486-19299505 None:intergenic 30.0%
!! AGAGCAGTGATATTTTAAAG+AGG + chr2_1:19299487-19299506 None:intergenic 30.0%
GGAAATTGAAATAACGAACC+TGG + chr2_1:19296880-19296899 None:intergenic 35.0%
!! CTTTTGTGTTGCTAAGTTAG+AGG - chr2_1:19297041-19297060 Msa0199880:CDS 35.0%
CTAAGTTAGAGGGTTTATGA+AGG - chr2_1:19297052-19297071 Msa0199880:CDS 35.0%
! TTGATCAATTTAGGCCTTGT+TGG - chr2_1:19297184-19297203 Msa0199880:intron 35.0%
!! TGATCAATTTAGGCCTTGTT+GGG - chr2_1:19297185-19297204 Msa0199880:intron 35.0%
TAAGTACTTGTGAAACAGCT+TGG + chr2_1:19297416-19297435 None:intergenic 35.0%
!!! TGTTGTTTTTGTTGTTCAGG+AGG - chr2_1:19297495-19297514 Msa0199880:intron 35.0%
CATAGAACAGAAACTTTACC+TGG + chr2_1:19297672-19297691 None:intergenic 35.0%
CAGGTAAAGTTTCTGTTCTA+TGG - chr2_1:19297670-19297689 Msa0199880:intron 35.0%
!!! TAGAAGTTTTGAAGGAAGAG+AGG - chr2_1:19297737-19297756 Msa0199880:intron 35.0%
!!! AGGAAAGCATTTTCATGCTA+AGG - chr2_1:19297962-19297981 Msa0199880:intron 35.0%
!!! GGAAAGCATTTTCATGCTAA+GGG - chr2_1:19297963-19297982 Msa0199880:intron 35.0%
! TTTTCATGCTAAGGGATAAG+TGG - chr2_1:19297971-19297990 Msa0199880:intron 35.0%
TGCTATAATCTACAACACTC+AGG + chr2_1:19298036-19298055 None:intergenic 35.0%
ATGACTATTGCATAGATGCT+AGG - chr2_1:19298174-19298193 Msa0199880:intron 35.0%
! ATTTAAAGCTGAACTTGTGG+TGG + chr2_1:19298303-19298322 None:intergenic 35.0%
! GACATTTAAAGCTGAACTTG+TGG + chr2_1:19298306-19298325 None:intergenic 35.0%
!! CAAGTTCAGCTTTAAATGTC+AGG - chr2_1:19298306-19298325 Msa0199880:intron 35.0%
AGAAATGTCATTGAGCAACT+TGG + chr2_1:19298745-19298764 None:intergenic 35.0%
TGTGTATAGTGAGCGAATAA+AGG + chr2_1:19298777-19298796 None:intergenic 35.0%
! GATGAGTTGAACCTTGATTT+GGG + chr2_1:19299123-19299142 None:intergenic 35.0%
! AGATGAGTTGAACCTTGATT+TGG + chr2_1:19299124-19299143 None:intergenic 35.0%
! TCAAGGTTCAACTCATCTTT+TGG - chr2_1:19299126-19299145 Msa0199880:intron 35.0%
! CAAGGTTCAACTCATCTTTT+GGG - chr2_1:19299127-19299146 Msa0199880:intron 35.0%
! AAGGTTCAACTCATCTTTTG+GGG - chr2_1:19299128-19299147 Msa0199880:intron 35.0%
! TTTTCTCTTCTATCCTAGAG+TGG + chr2_1:19299176-19299195 None:intergenic 35.0%
! GATTAATGGACAAATCCTTG+CGG - chr2_1:19299297-19299316 Msa0199880:CDS 35.0%
! ATTAATGGACAAATCCTTGC+GGG - chr2_1:19299298-19299317 Msa0199880:CDS 35.0%
!! TTCCTTGGTTTGTTAACTTG+AGG - chr2_1:19299356-19299375 Msa0199880:intron 35.0%
!! TCCTTGGTTTGTTAACTTGA+GGG - chr2_1:19299357-19299376 Msa0199880:intron 35.0%
CTCAAAGCTCAACACAAAAA+TGG + chr2_1:19299408-19299427 None:intergenic 35.0%
AGATTGGAAAGGAGAGAAGT+GGG - chr2_1:19296601-19296620 Msa0199880:three_prime_UTR 40.0%
TGGTACTCATCTTGTCTTGT+TGG + chr2_1:19296690-19296709 None:intergenic 40.0%
GAGTAGAAACGAACCATTCA+CGG + chr2_1:19296723-19296742 None:intergenic 40.0%
TCTGTTCTCTGTCTTCCTTA+GGG + chr2_1:19296823-19296842 None:intergenic 40.0%
TTCTGTTCTCTGTCTTCCTT+AGG + chr2_1:19296824-19296843 None:intergenic 40.0%
AAACAGCTTGGAAGAGCTTA+TGG + chr2_1:19297404-19297423 None:intergenic 40.0%
GTCAAAATCAACAGCGACTT+GGG + chr2_1:19297766-19297785 None:intergenic 40.0%
AGTCAAAATCAACAGCGACT+TGG + chr2_1:19297767-19297786 None:intergenic 40.0%
AAGTAGAGTGGTAGAGTCAT+AGG - chr2_1:19297790-19297809 Msa0199880:intron 40.0%
TCTACAACACTCAGGTTTGT+GGG + chr2_1:19298028-19298047 None:intergenic 40.0%
ATCTACAACACTCAGGTTTG+TGG + chr2_1:19298029-19298048 None:intergenic 40.0%
ACTATTGCATAGATGCTAGG+AGG - chr2_1:19298177-19298196 Msa0199880:intron 40.0%
GTAATGTGGATATGTCAGGT+AGG - chr2_1:19298819-19298838 Msa0199880:intron 40.0%
! AGGTTCAACTCATCTTTTGG+GGG - chr2_1:19299129-19299148 Msa0199880:intron 40.0%
CTCATTATGTTGTCCACTCT+AGG - chr2_1:19299160-19299179 Msa0199880:intron 40.0%
!! CCTTGGTTTGTTAACTTGAG+GGG - chr2_1:19299358-19299377 Msa0199880:intron 40.0%
GGGGAAATGTGGAATCAAAA+TGG - chr2_1:19299382-19299401 Msa0199880:intron 40.0%
GAGATTGGAAAGGAGAGAAG+TGG - chr2_1:19296600-19296619 Msa0199880:three_prime_UTR 45.0%
! CAGAGAAGAGAGTGTGAGTT+AGG - chr2_1:19296648-19296667 Msa0199880:three_prime_UTR 45.0%
CCATTCACGGCAAAACTTCA+TGG + chr2_1:19296710-19296729 None:intergenic 45.0%
! CCATGAAGTTTTGCCGTGAA+TGG - chr2_1:19296707-19296726 Msa0199880:three_prime_UTR 45.0%
GAACCTGGTGATCGCAATTA+CGG + chr2_1:19296865-19296884 None:intergenic 45.0%
CGCTGTGTTCAATGCAATCA+TGG - chr2_1:19297631-19297650 Msa0199880:intron 45.0%
! TGGTGAAGCTGTGTTTTTCC+AGG - chr2_1:19297651-19297670 Msa0199880:intron 45.0%
TCCCTATGACTCAGTTAGAC+TGG - chr2_1:19298502-19298521 Msa0199880:CDS 45.0%
GCCAGTCTAACTGAGTCATA+GGG + chr2_1:19298506-19298525 None:intergenic 45.0%
TGCCAGTCTAACTGAGTCAT+AGG + chr2_1:19298507-19298526 None:intergenic 45.0%
GTGCCATCTGTCAAACAGTT+TGG - chr2_1:19298534-19298553 Msa0199880:CDS 45.0%
CTGCCAAACTGTTTGACAGA+TGG + chr2_1:19298540-19298559 None:intergenic 45.0%
! CCAGTGTTTAGGTTCAGCTA+TGG + chr2_1:19298722-19298741 None:intergenic 45.0%
CCATAGCTGAACCTAAACAC+TGG - chr2_1:19298719-19298738 Msa0199880:intron 45.0%
TCTGCCCGCTAAAAGTAATG+TGG - chr2_1:19298805-19298824 Msa0199880:intron 45.0%
TTTGCTGCAACCCAAACTGT+GGG - chr2_1:19299067-19299086 Msa0199880:intron 45.0%
ACAAAACTCAGTCTCTCCAG+CGG + chr2_1:19299095-19299114 None:intergenic 45.0%
! TTTTGTGCCTGCCCAAATCA+AGG - chr2_1:19299109-19299128 Msa0199880:intron 45.0%
!! AGTTGAACCTTGATTTGGGC+AGG + chr2_1:19299119-19299138 None:intergenic 45.0%
CCCCTCAAGTTAACAAACCA+AGG + chr2_1:19299361-19299380 None:intergenic 45.0%
!! TGGTTTGTTAACTTGAGGGG+TGG - chr2_1:19299361-19299380 Msa0199880:intron 45.0%
!! GGTTTGTTAACTTGAGGGGT+GGG - chr2_1:19299362-19299381 Msa0199880:intron 45.0%
! GTTTGTTAACTTGAGGGGTG+GGG - chr2_1:19299363-19299382 Msa0199880:intron 45.0%
!! ATTTAGAAATAAAAAAAAAT+GGG + chr2_1:19296767-19296786 None:intergenic 5.0%
!! AATTTAGAAATAAAAAAAAA+TGG + chr2_1:19296768-19296787 None:intergenic 5.0%
!!! TTTTTTTTTTTTTTTTTTTG+AGG - chr2_1:19297127-19297146 Msa0199880:intron 5.0%
!!! TTTTTTTTTTTTTTTTTTGA+GGG - chr2_1:19297128-19297147 Msa0199880:intron 5.0%
TTGGAAAGGAGAGAAGTGGG+AGG - chr2_1:19296604-19296623 Msa0199880:three_prime_UTR 50.0%
TGGAAAGGAGAGAAGTGGGA+GGG - chr2_1:19296605-19296624 Msa0199880:three_prime_UTR 50.0%
TTGCCGTAATTGCGATCACC+AGG - chr2_1:19296859-19296878 Msa0199880:three_prime_UTR 50.0%
TTCACCACTCTGTTGCTGAG+CGG - chr2_1:19297551-19297570 Msa0199880:intron 50.0%
TTGAACACAGCGAACAGCCT+TGG + chr2_1:19297623-19297642 None:intergenic 50.0%
GAGCAACTTGGCCAGTGTTT+AGG + chr2_1:19298733-19298752 None:intergenic 50.0%
CATATGCAGGCAACTGCTAG+AGG - chr2_1:19299018-19299037 Msa0199880:intron 50.0%
! GTTTGCTGCAACCCAAACTG+TGG - chr2_1:19299066-19299085 Msa0199880:intron 50.0%
TTTCAGCATGACAACCCGCA+AGG + chr2_1:19299315-19299334 None:intergenic 50.0%
TGGATGGCCCTGAATTTCCT+TGG - chr2_1:19299341-19299360 Msa0199880:intron 50.0%
CGCAATTACGGCAAGCGTAG+AGG + chr2_1:19296853-19296872 None:intergenic 55.0%
! TGAGCGGACTCAAGTGTTGC+AGG - chr2_1:19297567-19297586 Msa0199880:intron 55.0%
TCCAACTCTTCCTCGCACCA+AGG - chr2_1:19297603-19297622 Msa0199880:intron 55.0%
ACTTGAGGGGTGGGGAAATG+TGG - chr2_1:19299371-19299390 Msa0199880:intron 55.0%
GAGTCCGCTCAGCAACAGAG+TGG + chr2_1:19297558-19297577 None:intergenic 60.0%
! GCCTTGGTGCGAGGAAGAGT+TGG + chr2_1:19297607-19297626 None:intergenic 60.0%
GCAACTGCTAGAGGCGAGGA+AGG - chr2_1:19299027-19299046 Msa0199880:intron 60.0%
TCCAGCGGTGCCCACAGTTT+GGG + chr2_1:19299080-19299099 None:intergenic 60.0%
! CAGCGAACAGCCTTGGTGCG+AGG + chr2_1:19297616-19297635 None:intergenic 65.0%
GCAGGCAACTGCTAGAGGCG+AGG - chr2_1:19299023-19299042 Msa0199880:intron 65.0%
! ACCCAAACTGTGGGCACCGC+TGG - chr2_1:19299076-19299095 Msa0199880:intron 65.0%
CTCCAGCGGTGCCCACAGTT+TGG + chr2_1:19299081-19299100 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 19296596 19299548 19296596 ID=Msa0199880;Name=Msa0199880
chr2_1 mRNA 19296596 19299548 19296596 ID=Msa0199880-mRNA-1;Parent=Msa0199880;Name=Msa0199880-mRNA-1;_AED=0.05;_eAED=0.05;_QI=104|1|1|1|1|1|4|441|114
chr2_1 exon 19296596 19297117 19296596 ID=Msa0199880-mRNA-1:exon:8086;Parent=Msa0199880-mRNA-1
chr2_1 exon 19298472 19298630 19298472 ID=Msa0199880-mRNA-1:exon:8085;Parent=Msa0199880-mRNA-1
chr2_1 exon 19299264 19299339 19299264 ID=Msa0199880-mRNA-1:exon:8084;Parent=Msa0199880-mRNA-1
chr2_1 exon 19299416 19299548 19299416 ID=Msa0199880-mRNA-1:exon:8083;Parent=Msa0199880-mRNA-1
chr2_1 five_prime_UTR 19299445 19299548 19299445 ID=Msa0199880-mRNA-1:five_prime_utr;Parent=Msa0199880-mRNA-1
chr2_1 CDS 19299416 19299444 19299416 ID=Msa0199880-mRNA-1:cds;Parent=Msa0199880-mRNA-1
chr2_1 CDS 19299264 19299339 19299264 ID=Msa0199880-mRNA-1:cds;Parent=Msa0199880-mRNA-1
chr2_1 CDS 19298472 19298630 19298472 ID=Msa0199880-mRNA-1:cds;Parent=Msa0199880-mRNA-1
chr2_1 CDS 19297037 19297117 19297037 ID=Msa0199880-mRNA-1:cds;Parent=Msa0199880-mRNA-1
chr2_1 three_prime_UTR 19296596 19297036 19296596 ID=Msa0199880-mRNA-1:three_prime_utr;Parent=Msa0199880-mRNA-1
Gene Sequence

>Msa0199880

ATGAGTACCATGAAGTTTTGCCGTGAATGTAACAACATTCTATACCCTAAGGAAGACAGAGAACAGAAAATTCTCCTCTACGCTTGCCGTAATTGCGATCACCAGGAGGCAGCTGATAACTTCTGTGTCTACAGAAATGAGATTCACCACTCTGTTGCTGAGCGGACTCAAGTGTTGCAGGATGTAGCTGCAGATCCAACTCTTCCTCGCACCAAGGCTGTTCGCTGTGTTCAATGCAATCATGGTGAAGCTGTGTTTTTCCAGGCAACTGCTAGAGGCGAGGAAGGAATGACACTTTTCTTCGTTTGCTGCAACCCAAACTGTGGGCACCGCTGGAGAGACTGA

Protein sequence

>Msa0199880

MSTMKFCRECNNILYPKEDREQKILLYACRNCDHQEAADNFCVYRNEIHHSVAERTQVLQDVAADPTLPRTKAVRCVQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGHRWRD*