AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1019260


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1019260 MtrunA17_Chr7g0234781 98.157 217 2 1 214 428 1 217 1.60e-152 431
Msa1019260 MtrunA17_Chr7g0234781 98.140 215 2 1 1 213 1 215 2.02e-151 427
Msa1019260 MtrunA17_Chr8g0339111 90.244 205 16 2 1 203 1 203 1.01e-119 347
Msa1019260 MtrunA17_Chr8g0339111 89.862 217 18 2 214 428 1 215 4.26e-119 345
Msa1019260 MtrunA17_Chr4g0006811 87.895 190 21 1 26 213 5 194 9.71e-117 339
Msa1019260 MtrunA17_Chr4g0006811 86.979 192 23 1 239 428 5 196 1.49e-116 338
Msa1019260 MtrunA17_Chr8g0339121 87.179 195 23 1 26 218 5 199 2.01e-112 329
Msa1019260 MtrunA17_Chr8g0339121 87.435 191 22 1 239 427 5 195 5.57e-111 325
Msa1019260 MtrunA17_Chr4g0006791 75.904 83 19 1 347 428 12 94 2.64e-35 125
Msa1019260 MtrunA17_Chr4g0006791 79.221 77 15 1 134 209 12 88 2.96e-34 123
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1019260 AT5G59240.1 85.253 217 21 2 1 215 1 208 4.95e-122 353
Msa1019260 AT5G59240.1 84.390 205 21 2 214 416 1 196 6.64e-121 350
Msa1019260 AT5G20290.1 80.952 210 33 2 1 203 1 210 1.27e-104 309
Msa1019260 AT5G20290.1 80.631 222 36 2 214 428 1 222 4.74e-104 308

Find 124 sgRNAs with CRISPR-Local

Find 482 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTTTGGTTTAGTGTTAAT+TGG 0.215750 7_1:-40679964 Msa1019260:intron
AGTAATTAAAGAGCAAAATT+TGG 0.217728 7_1:+40679911 None:intergenic
ATCCCATAGATATTGGTATT+TGG 0.228422 7_1:-40680039 Msa1019260:three_prime_UTR
TACCTCTGCAGAATCCTTCT+TGG 0.271014 7_1:+40680945 None:intergenic
CTAGACAGCTTAGTGTTTGC+TGG 0.273445 7_1:+40686782 None:intergenic
CATTTGTATCCCATAGATAT+TGG 0.281025 7_1:-40680046 Msa1019260:three_prime_UTR
GTACCAAATACCAATATCTA+TGG 0.285881 7_1:+40680036 None:intergenic
TTGTATGAACAGGTATTTCT+AGG 0.287281 7_1:-40687832 Msa1019260:intron
CACCTCTGCAGAATCCTTCT+TGG 0.295436 7_1:+40686490 None:intergenic
CTCGCCCTGGTCAATGTGGC+AGG 0.353391 7_1:-40685694 Msa1019260:CDS
CACGCCCTGGTCAATGTGGC+AGG 0.380048 7_1:-40680267 Msa1019260:CDS
GGTCAATGTGGCAGGGCTGA+TGG 0.387861 7_1:-40680259 Msa1019260:CDS
GGTCAATGTGGCAGGGCTGA+TGG 0.387861 7_1:-40685686 Msa1019260:CDS
GTAAGTAATATGAATAATAT+AGG 0.393952 7_1:+40679826 None:intergenic
TGGACACTGGAAATTTCTCT+TGG 0.405072 7_1:-40686697 Msa1019260:CDS
TTGAGCAGCGTCAGAAAGAT+AGG 0.420260 7_1:-40680351 Msa1019260:CDS
TTGAGCAGCGTCAGAAAGAT+AGG 0.420260 7_1:-40685778 Msa1019260:CDS
CTAGACAGCTTAGTGTTGGC+TGG 0.421456 7_1:+40681237 None:intergenic
AGACGGAGAGGAAGAGGGTT+AGG 0.423514 7_1:-40687982 Msa1019260:five_prime_UTR
GGACACTGGAAATTTCTCTT+GGG 0.433354 7_1:-40686696 Msa1019260:CDS
GTCAGGAGAATCCGTGTTAG+AGG 0.433718 7_1:-40681204 Msa1019260:CDS
GTCAATGTGGCAGGGCTGAT+GGG 0.439498 7_1:-40680258 Msa1019260:intron
GTCAATGTGGCAGGGCTGAT+GGG 0.439498 7_1:-40685685 Msa1019260:intron
GTCAGGAGGATCCGTGTTAG+AGG 0.444512 7_1:-40686749 Msa1019260:CDS
TCCAATAGGTACATTCTTGA+AGG 0.448248 7_1:-40680160 Msa1019260:intron
TCCAATAGGTACATTCTTGA+AGG 0.448248 7_1:-40685577 Msa1019260:intron
CAGTGGTATCTTCAGCACTA+TGG 0.456331 7_1:-40681000 Msa1019260:CDS
GCAGAGAGACGGAGAGGAAG+AGG 0.460646 7_1:-40687988 Msa1019260:five_prime_UTR
ACGAACAAGCTCATTGTTTG+AGG 0.460749 7_1:+40681077 None:intergenic
ACGAACAAGCTCATTGTTTG+AGG 0.460749 7_1:+40686622 None:intergenic
GCCTGCATTTCATCTCGCCC+TGG 0.462140 7_1:-40685707 Msa1019260:CDS
ACAGCTTAGTGTTGGCTGGC+TGG 0.467973 7_1:+40681241 None:intergenic
ACAGCTTAGTGTTTGCTGGC+TGG 0.473431 7_1:+40686786 None:intergenic
TCAGCCCTGCCACATTGACC+AGG 0.474891 7_1:+40680262 None:intergenic
TCAGCCCTGCCACATTGACC+AGG 0.474891 7_1:+40685689 None:intergenic
GCCTGCATTTCATCACGCCC+TGG 0.479375 7_1:-40680280 Msa1019260:CDS
TGTCTAGCAACAAGACAGTC+AGG 0.484105 7_1:-40681221 Msa1019260:CDS
TGTCTAGCAACAAGACAGTC+AGG 0.484105 7_1:-40686766 Msa1019260:CDS
CAGCACTATGGTGTTGAAGT+TGG 0.484909 7_1:-40680988 Msa1019260:CDS
ATGCACAAGAGGCGTGCCAC+TGG 0.486837 7_1:-40687803 Msa1019260:CDS
CATTCTTGAAGGTAAGGAGT+TGG 0.488645 7_1:-40680149 Msa1019260:CDS
AAAGAAAACATAAACTTGAA+TGG 0.495984 7_1:+40680014 None:intergenic
TGAAGATACCACTGCTTGAA+TGG 0.499687 7_1:+40686554 None:intergenic
TAGGTACATTCTTGAAGGTA+AGG 0.500539 7_1:-40680155 Msa1019260:CDS
TAGGTACATTCTTGAAGGTA+AGG 0.500539 7_1:-40685572 Msa1019260:CDS
TGAAGATACCACTGCTTGAA+TGG 0.502756 7_1:+40681009 None:intergenic
GCTTGTTCGTACTCAGACTC+TGG 0.506342 7_1:-40681064 Msa1019260:intron
GCTTGTTCGTACTCAGACTC+TGG 0.506342 7_1:-40686609 Msa1019260:intron
ATTGAAGAGCAGTTCGGCGG+TGG 0.507577 7_1:-40680313 Msa1019260:CDS
TGAATGGAGCAGCATCAACT+TGG 0.511965 7_1:+40686570 None:intergenic
GTTGCTAGACAGCTTAGTGT+TGG 0.512620 7_1:+40681233 None:intergenic
TTAGAGGTGGCAATGTGAAA+TGG 0.513214 7_1:-40681188 Msa1019260:CDS
TTAGAGGTGGCAATGTGAAA+TGG 0.513214 7_1:-40686733 Msa1019260:CDS
AAGGTGAATCATACCCATCT+TGG 0.516233 7_1:+40687941 None:intergenic
CATTCTTGAAGGTAAGGAGC+TGG 0.520802 7_1:-40685566 Msa1019260:CDS
CAGCACTACGGTGTTGAAGT+TGG 0.523099 7_1:-40686533 Msa1019260:CDS
ATGCACAAGAGGCGTGCCAC+TGG 0.523144 7_1:-40682454 Msa1019260:CDS
GAAATGGAGAGCTCTTAGAT+TGG 0.523645 7_1:-40681172 Msa1019260:CDS
GAAATGGAGAGCTCTTAGAT+TGG 0.523645 7_1:-40686717 Msa1019260:CDS
ACCAGGGCGTGATGAAATGC+AGG 0.526557 7_1:+40680279 None:intergenic
GAGAGCAAGCTCCGCCAAGA+TGG 0.533873 7_1:-40687955 Msa1019260:exon
ATTGAAGAGCAGTTCGGTGG+TGG 0.534168 7_1:-40685740 Msa1019260:CDS
CTGGTGGCAAGAAGAAGAGC+TGG 0.534252 7_1:-40682435 Msa1019260:CDS
CTGGTGGCAAGAAGAAGAGC+TGG 0.534252 7_1:-40687784 Msa1019260:CDS
TCCCACATTGAAGAGCAGTT+CGG 0.538409 7_1:-40680319 Msa1019260:CDS
TGAATGGTGCAGCATCAACT+TGG 0.539497 7_1:+40681025 None:intergenic
GCTCTTCTTCTTGCCACCAG+TGG 0.539638 7_1:+40682438 None:intergenic
GCTCTTCTTCTTGCCACCAG+TGG 0.539638 7_1:+40687787 None:intergenic
TCCCACATTGAAGAGCAGTT+CGG 0.546947 7_1:-40685746 Msa1019260:CDS
AAAGAAAACAGCAGCCAAGA+AGG 0.547923 7_1:-40680959 Msa1019260:CDS
AAAGAAAACAGCAGCCAAGA+AGG 0.547923 7_1:-40686504 Msa1019260:CDS
TGTATGAACAGGTATTTCTA+GGG 0.550526 7_1:-40687831 Msa1019260:intron
TCGCCCTGGTCAATGTGGCA+GGG 0.554881 7_1:-40685693 Msa1019260:CDS
AGAGCAAGCTCCGCCAAGAT+GGG 0.554934 7_1:-40687954 Msa1019260:intron
CGCCGAACTGCTCTTCAATG+TGG 0.556342 7_1:+40680317 None:intergenic
ACCAGGGCGAGATGAAATGC+AGG 0.557367 7_1:+40685706 None:intergenic
AGTGGCACGCCTCTTGTGCA+TGG 0.560948 7_1:+40687805 None:intergenic
AATTTGCATAAAACTAGTAA+AGG 0.565064 7_1:+40679938 None:intergenic
TGCAGCATCAACTTGGACAA+TGG 0.565135 7_1:+40681032 None:intergenic
AGCAGCATCAACTTGGACAA+TGG 0.568376 7_1:+40686577 None:intergenic
TTTGCATATAAGACTAGTGA+AGG 0.572951 7_1:+40679856 None:intergenic
CAGAGAGACGGAGAGGAAGA+GGG 0.573739 7_1:-40687987 Msa1019260:five_prime_UTR
CACAAGAGGCGTGCCACTGG+TGG 0.574033 7_1:-40682451 Msa1019260:CDS
ACCGAACTGCTCTTCAATGT+GGG 0.574716 7_1:+40685745 None:intergenic
GCCGAACTGCTCTTCAATGT+GGG 0.578038 7_1:+40680318 None:intergenic
GTGAATCATACCCATCTTGG+CGG 0.584425 7_1:+40687944 None:intergenic
TACCAAATACCAATATCTAT+GGG 0.587108 7_1:+40680037 None:intergenic
CACCGAACTGCTCTTCAATG+TGG 0.587303 7_1:+40685744 None:intergenic
GACACTGGAAATTTCTCTTG+GGG 0.588786 7_1:-40686695 Msa1019260:CDS
CACAAGAGGCGTGCCACTGG+TGG 0.589648 7_1:-40687800 Msa1019260:CDS
GGTTTGTATAGGTACGAGCT+TGG 0.590987 7_1:-40681267 Msa1019260:intron
AAATTTCTCTTGGGGTAGTG+AGG 0.592656 7_1:-40686687 Msa1019260:CDS
ACACAGAATCAGCAGAGAGA+CGG 0.593540 7_1:-40687999 Msa1019260:five_prime_UTR
ACGCCCTGGTCAATGTGGCA+GGG 0.593939 7_1:-40680266 Msa1019260:CDS
CAAGACTCGTCTTCTCGATG+TGG 0.596566 7_1:-40681109 Msa1019260:CDS
CAAGACTCGTCTTCTCGATG+TGG 0.596566 7_1:-40686654 Msa1019260:CDS
TCACATTGCCACCTCTAACA+CGG 0.596796 7_1:+40686738 None:intergenic
TCACATTGCCACCTCTAACA+CGG 0.599964 7_1:+40681193 None:intergenic
AAATTTCTCGTGGGGTAGTG+AGG 0.601685 7_1:-40681142 Msa1019260:CDS
CAAGAGATTCTATGCACAAG+AGG 0.601927 7_1:-40682465 Msa1019260:CDS
CACATTGAAGAGCAGTTCGG+TGG 0.602058 7_1:-40685743 Msa1019260:CDS
GGGTTGTATAGGTACGAGCT+TGG 0.602072 7_1:-40686812 Msa1019260:intron
CAGTGGTATCTTCAGCACTA+CGG 0.606289 7_1:-40686545 Msa1019260:CDS
TGGACACTGGAAATTTCTCG+TGG 0.606783 7_1:-40681152 Msa1019260:CDS
GGACACTGGAAATTTCTCGT+GGG 0.613954 7_1:-40681151 Msa1019260:CDS
CACATTGAAGAGCAGTTCGG+CGG 0.615554 7_1:-40680316 Msa1019260:CDS
GACACTGGAAATTTCTCGTG+GGG 0.616779 7_1:-40681150 Msa1019260:CDS
CAGCCCTGCCACATTGACCA+GGG 0.623121 7_1:+40685690 None:intergenic
AGCCAAGAAGGATTCTGCAG+AGG 0.628735 7_1:-40686492 Msa1019260:intron
AGCCAAGAAGGATTCTGCAG+AGG 0.633472 7_1:-40680947 Msa1019260:intron
AGGAGAATCCGTGTTAGAGG+TGG 0.633660 7_1:-40681201 Msa1019260:CDS
AGGAGGATCCGTGTTAGAGG+TGG 0.633660 7_1:-40686746 Msa1019260:CDS
CTAGGGATTCCATGCACAAG+AGG 0.633798 7_1:-40687814 Msa1019260:CDS
ATGCTGCTCCATTCAAGCAG+TGG 0.634513 7_1:-40686562 Msa1019260:CDS
GAATCAGCAGAGAGACGGAG+AGG 0.636802 7_1:-40687994 Msa1019260:five_prime_UTR
CAGCCCTGCCACATTGACCA+GGG 0.641454 7_1:+40680263 None:intergenic
ACTATGGTGTTGAAGTTGGT+AGG 0.642583 7_1:-40680984 Msa1019260:CDS
ATGCTGCACCATTCAAGCAG+TGG 0.644432 7_1:-40681017 Msa1019260:CDS
TCATCTCGCCCTGGTCAATG+TGG 0.644879 7_1:-40685698 Msa1019260:CDS
TCATCACGCCCTGGTCAATG+TGG 0.654082 7_1:-40680271 Msa1019260:CDS
ACTACGGTGTTGAAGTTGGT+AGG 0.661832 7_1:-40686529 Msa1019260:CDS
AGAGCTCTTAGATTGGACAC+TGG 0.691283 7_1:-40681165 Msa1019260:CDS
AGAGCTCTTAGATTGGACAC+TGG 0.691283 7_1:-40686710 Msa1019260:CDS
CTAGCAACAAGACAGTCAGG+AGG 0.730674 7_1:-40686763 Msa1019260:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAATAGAATATTTCAAAAT+TGG + chr7_1:40682793-40682812 None:intergenic 10.0%
!! CTATTAAAAATCAAAATATA+AGG - chr7_1:40682806-40682825 Msa1019260:intron 10.0%
!! AAATAATTTATATACACTAT+CGG - chr7_1:40684539-40684558 Msa1019260:intron 10.0%
!!! TGAAATTTTAATCTAATTAA+AGG + chr7_1:40686449-40686468 None:intergenic 10.0%
!!! GATTAAAATTTCAATTTTTT+TGG - chr7_1:40686456-40686475 Msa1019260:intron 10.0%
!! AGCTTAAATAATAATTAACT+GGG + chr7_1:40680972-40680991 None:intergenic 15.0%
!! AAGCTTAAATAATAATTAAC+TGG + chr7_1:40680973-40680992 None:intergenic 15.0%
!! TAAAAGATTAATATTTGAGA+AGG + chr7_1:40681462-40681481 None:intergenic 15.0%
!!! ATATAATATTTGTTTCTTGA+TGG - chr7_1:40681548-40681567 Msa1019260:intron 15.0%
!!! GGTATTTAAGTTATTTTTAT+TGG - chr7_1:40681645-40681664 Msa1019260:intron 15.0%
!!! AAGTTATTTTTATTGGATAT+TGG - chr7_1:40681652-40681671 Msa1019260:intron 15.0%
!! ATAATCTATGTTTACTATTA+AGG - chr7_1:40681850-40681869 Msa1019260:intron 15.0%
!! TAATCTATGTTTACTATTAA+GGG - chr7_1:40681851-40681870 Msa1019260:intron 15.0%
!! ATTGTTAAATTTGATAAGAA+TGG + chr7_1:40684173-40684192 None:intergenic 15.0%
!!! CTCATTTTAAGTATTTATTT+TGG - chr7_1:40684472-40684491 Msa1019260:intron 15.0%
!!! TAAGTATTTATTTTGGAATT+TGG - chr7_1:40684479-40684498 Msa1019260:intron 15.0%
!!! ATTGGTTTATTAAATAGAAT+GGG + chr7_1:40685045-40685064 None:intergenic 15.0%
!!! TATTGGTTTATTAAATAGAA+TGG + chr7_1:40685046-40685065 None:intergenic 15.0%
!!! TAAATTTAAGATGTTTTTGT+CGG - chr7_1:40686528-40686547 Msa1019260:CDS 15.0%
!! ATATATTATGTGTTTCTTAA+TGG - chr7_1:40687094-40687113 Msa1019260:intron 15.0%
!!! CTTTAAGTTATCATTTTAAT+TGG - chr7_1:40687191-40687210 Msa1019260:intron 15.0%
!!! TTATCATTTTAATTGGATAT+TGG - chr7_1:40687198-40687217 Msa1019260:intron 15.0%
!! TATATGTTTATATAAAGAGT+GGG + chr7_1:40687271-40687290 None:intergenic 15.0%
!! ATATATGTTTATATAAAGAG+TGG + chr7_1:40687272-40687291 None:intergenic 15.0%
!!! AAAAAAAGTTATGTTTTCTT+TGG - chr7_1:40687838-40687857 Msa1019260:intron 15.0%
!! GTAAGTAATATGAATAATAT+AGG + chr7_1:40687994-40688013 None:intergenic 15.0%
!!! TAATTTTCTAGAGAGAAAAA+AGG + chr7_1:40680079-40680098 None:intergenic 20.0%
!! TTTATCTTGTTCTATACAAA+TGG + chr7_1:40680331-40680350 None:intergenic 20.0%
!!! TTCATTTCTGGAATTATATA+TGG - chr7_1:40680670-40680689 Msa1019260:intron 20.0%
!! TTAGAGTTACTTAATTATAG+AGG + chr7_1:40680816-40680835 None:intergenic 20.0%
!! TGGAATTATAATCTAATCAA+AGG + chr7_1:40680894-40680913 None:intergenic 20.0%
!!! ATTCCAATAGTAAATTTTGT+TGG - chr7_1:40680908-40680927 Msa1019260:intron 20.0%
!!! ATTTAAGCTTTTGTTTTTGT+TGG - chr7_1:40680983-40681002 Msa1019260:CDS 20.0%
!!! TTTAAGCTTTTGTTTTTGTT+GGG - chr7_1:40680984-40681003 Msa1019260:CDS 20.0%
!! GAAATAAAAAAATAATCCAC+AGG + chr7_1:40681413-40681432 None:intergenic 20.0%
!!! TATTGTTTTTTATTCGATGT+TGG - chr7_1:40681525-40681544 Msa1019260:intron 20.0%
!! CTTAATAGTAAACTAAACAT+GGG + chr7_1:40681624-40681643 None:intergenic 20.0%
!!! CATGTTTAGTTTACTATTAA+GGG - chr7_1:40681623-40681642 Msa1019260:intron 20.0%
!!! ATGTTTAGTTTACTATTAAG+GGG - chr7_1:40681624-40681643 Msa1019260:intron 20.0%
!! TAGATTATTCATACAAAGAT+TGG + chr7_1:40681838-40681857 None:intergenic 20.0%
!! AAGAAATTACAGAAAAAGAA+GGG - chr7_1:40682285-40682304 Msa1019260:intron 20.0%
!!! ATTTTGTTTCTCTTAGATAT+TGG - chr7_1:40682354-40682373 Msa1019260:intron 20.0%
!! AAAGAAAACATAAACTTGAA+TGG + chr7_1:40682389-40682408 None:intergenic 20.0%
!!! ATTCAAGTTTATGTTTTCTT+TGG - chr7_1:40682388-40682407 Msa1019260:intron 20.0%
!!! TTATCTTTTTTAAGAGCATT+CGG + chr7_1:40683116-40683135 None:intergenic 20.0%
!!! ATCTAAAATGACATGATTAA+TGG + chr7_1:40683641-40683660 None:intergenic 20.0%
!!! TTATTTAAATTTCAAGTGTC+CGG - chr7_1:40684915-40684934 Msa1019260:intron 20.0%
!! GAAATTAATTAAAATCATCC+CGG + chr7_1:40684937-40684956 None:intergenic 20.0%
!! ATACTTTAAGCATATAATCT+AGG - chr7_1:40684975-40684994 Msa1019260:intron 20.0%
!! TTGGTTTATTAAATAGAATG+GGG + chr7_1:40685044-40685063 None:intergenic 20.0%
!! TGATTATATAGAGAGAAAAA+GGG + chr7_1:40685428-40685447 None:intergenic 20.0%
!! TTGATTATATAGAGAGAAAA+AGG + chr7_1:40685429-40685448 None:intergenic 20.0%
!! AAAATTCAAATAGAACAATG+TGG + chr7_1:40685462-40685481 None:intergenic 20.0%
!!! AATTAACTTGTTCAGTATTA+AGG - chr7_1:40685540-40685559 Msa1019260:CDS 20.0%
!!! TTTTTATAAAGTACCTTTAC+CGG - chr7_1:40685894-40685913 Msa1019260:intron 20.0%
!! AAATTTCAAAAACAGATTAG+GGG + chr7_1:40686061-40686080 None:intergenic 20.0%
!! GAAATTTCAAAAACAGATTA+GGG + chr7_1:40686062-40686081 None:intergenic 20.0%
!! TGAAATTTCAAAAACAGATT+AGG + chr7_1:40686063-40686082 None:intergenic 20.0%
!! GAATATTGATCAAAATACAA+AGG - chr7_1:40680759-40680778 Msa1019260:intron 20.0%
!! TTAGTATTAATAATACTCAG+CGG + chr7_1:40686326-40686345 None:intergenic 20.0%
!!! CATCATACTAATTTGTTTAT+AGG + chr7_1:40686373-40686392 None:intergenic 20.0%
!!! AAATTTAAGATGTTTTTGTC+GGG - chr7_1:40686529-40686548 Msa1019260:CDS 20.0%
!! ACATAGGTTATTCATATAAA+GGG + chr7_1:40687150-40687169 None:intergenic 20.0%
!! AACATAGGTTATTCATATAA+AGG + chr7_1:40687151-40687170 None:intergenic 20.0%
!!! TATGTTTAGTTTACCATTAA+GGG - chr7_1:40687165-40687184 Msa1019260:intron 20.0%
!! TAAACATATATTTGCCATTA+AGG - chr7_1:40687281-40687300 Msa1019260:intron 20.0%
!! AAACATATATTTGCCATTAA+GGG - chr7_1:40687282-40687301 Msa1019260:intron 20.0%
!! AAGAAATTACAGAAAAAGAA+GGG - chr7_1:40682285-40682304 Msa1019260:intron 20.0%
!! AAAGAAAACATAAACTTGAA+TGG + chr7_1:40682389-40682408 None:intergenic 20.0%
!! AATTTGCATAAAACTAGTAA+AGG + chr7_1:40687882-40687901 None:intergenic 20.0%
!! AGTAATTAAAGAGCAAAATT+TGG + chr7_1:40687909-40687928 None:intergenic 20.0%
! AACGTGTATGAATTATTTGT+TGG - chr7_1:40679946-40679965 Msa1019260:three_prime_UTR 25.0%
! ATTAATGTCATTCAGTTTGA+AGG - chr7_1:40680216-40680235 Msa1019260:intron 25.0%
! ACAGTGGATAAATTCAAATA+AGG - chr7_1:40680502-40680521 Msa1019260:intron 25.0%
! AATTTGTACAAACAGATTAG+GGG + chr7_1:40680542-40680561 None:intergenic 25.0%
! GAATTTGTACAAACAGATTA+GGG + chr7_1:40680543-40680562 None:intergenic 25.0%
! TGAATTTGTACAAACAGATT+AGG + chr7_1:40680544-40680563 None:intergenic 25.0%
! TAATCTGTTTGTACAAATTC+AGG - chr7_1:40680543-40680562 Msa1019260:intron 25.0%
! CATATGTCATTATTCATTTC+TGG - chr7_1:40680658-40680677 Msa1019260:intron 25.0%
! TCATCTTACCTATAGATATT+GGG + chr7_1:40680788-40680807 None:intergenic 25.0%
! ATCATCTTACCTATAGATAT+TGG + chr7_1:40680789-40680808 None:intergenic 25.0%
! CATCCAACAAAATTTACTAT+TGG + chr7_1:40680914-40680933 None:intergenic 25.0%
!!! TTAAGCTTTTGTTTTTGTTG+GGG - chr7_1:40680985-40681004 Msa1019260:CDS 25.0%
!! ATTTTCCTGTTATATGTGTT+TGG - chr7_1:40681362-40681381 Msa1019260:intron 25.0%
!! TTTTCCTGTTATATGTGTTT+GGG - chr7_1:40681363-40681382 Msa1019260:intron 25.0%
! TGTATGATATATGCCTATAT+TGG - chr7_1:40681387-40681406 Msa1019260:intron 25.0%
! CCTTAATAGTAAACTAAACA+TGG + chr7_1:40681625-40681644 None:intergenic 25.0%
!! CCATGTTTAGTTTACTATTA+AGG - chr7_1:40681622-40681641 Msa1019260:intron 25.0%
! GAAGAAATTACAGAAAAAGA+AGG - chr7_1:40682284-40682303 Msa1019260:intron 25.0%
! TTCTCTTAGATATTGGTATT+TGG - chr7_1:40682361-40682380 Msa1019260:intron 25.0%
! TAATGTTTACAATTGTTAGC+TGG - chr7_1:40682503-40682522 Msa1019260:intron 25.0%
! CAAAAATTGCATATAAGTGA+AGG + chr7_1:40682532-40682551 None:intergenic 25.0%
! TGTATCTGATACAATTGAAA+AGG + chr7_1:40682636-40682655 None:intergenic 25.0%
!!! TCATGTCATTTTAGATTGTA+AGG - chr7_1:40683645-40683664 Msa1019260:intron 25.0%
! TATAGATATCGGGATAAATT+CGG + chr7_1:40683962-40683981 None:intergenic 25.0%
! TGCAGTGTAAATATAGATAT+CGG + chr7_1:40683973-40683992 None:intergenic 25.0%
! AAACTGTTTCCTAGTTATAA+TGG + chr7_1:40684047-40684066 None:intergenic 25.0%
! TCAAAGTTGTTAATACATGA+TGG + chr7_1:40684245-40684264 None:intergenic 25.0%
! AATGAAATGTTATAACGTAG+TGG - chr7_1:40684270-40684289 Msa1019260:intron 25.0%
!!! ATATGCTATAAGTTGTTTTC+AGG - chr7_1:40684590-40684609 Msa1019260:intron 25.0%
!!! TATGCTATAAGTTGTTTTCA+GGG - chr7_1:40684591-40684610 Msa1019260:intron 25.0%
!!! TTTTAGCTTTTGCTTGATTT+AGG - chr7_1:40684882-40684901 Msa1019260:intron 25.0%
!! TATTTAAATTTCAAGTGTCC+GGG - chr7_1:40684916-40684935 Msa1019260:intron 25.0%
!! TATTAAATAGAATGGGGTTT+TGG + chr7_1:40685038-40685057 None:intergenic 25.0%
! TCTACTACTTATTACTCTAT+TGG + chr7_1:40685063-40685082 None:intergenic 25.0%
! TAATAAGTAGTAGATCAACA+TGG - chr7_1:40685069-40685088 Msa1019260:intron 25.0%
! TATAAGTTGTGAATGCAATA+CGG - chr7_1:40685107-40685126 Msa1019260:intron 25.0%
! TATTTGCATGATAGATCAAA+TGG - chr7_1:40685168-40685187 Msa1019260:intron 25.0%
! AGACATAATTCGATAACAAA+TGG - chr7_1:40685228-40685247 Msa1019260:intron 25.0%
!! GTTTTGTATGAACTATTTGT+TGG - chr7_1:40685295-40685314 Msa1019260:intron 25.0%
! TGAGAACTTATGAAATTAAG+CGG - chr7_1:40685705-40685724 Msa1019260:CDS 25.0%
!!! TTATGAAAAGTGTCAAAAGT+TGG - chr7_1:40685736-40685755 Msa1019260:CDS 25.0%
!! AGCTTATGAAGATACAATTT+TGG + chr7_1:40685872-40685891 None:intergenic 25.0%
!! ATATTTTGCAAGACTGTTTA+GGG + chr7_1:40685999-40686018 None:intergenic 25.0%
!! TATATTTTGCAAGACTGTTT+AGG + chr7_1:40686000-40686019 None:intergenic 25.0%
!! CTTTTGTCATTATTCATTTC+TGG - chr7_1:40686149-40686168 Msa1019260:intron 25.0%
!!! TTCATTTCTGGAATTATATG+TGG - chr7_1:40686161-40686180 Msa1019260:intron 25.0%
! TATTGATCAAAATACAAAGG+AGG - chr7_1:40686242-40686261 Msa1019260:intron 25.0%
!!! TTTATAGGAACTTCTAAGAT+AGG + chr7_1:40686358-40686377 None:intergenic 25.0%
! AAATCCTAATCACATTTAAC+AGG + chr7_1:40686416-40686435 None:intergenic 25.0%
! CTTACAATTTCAACACAATA+TGG + chr7_1:40687045-40687064 None:intergenic 25.0%
! ATTGTGTTGAAATTGTAAGT+AGG - chr7_1:40687046-40687065 Msa1019260:intron 25.0%
!!! CTAGGCTTATTGTTTTTTAT+TGG - chr7_1:40687071-40687090 Msa1019260:intron 25.0%
! CTTAATGGTAAACTAAACAT+AGG + chr7_1:40687166-40687185 None:intergenic 25.0%
!! CTATGTTTAGTTTACCATTA+AGG - chr7_1:40687164-40687183 Msa1019260:intron 25.0%
!! ATGTTTAGTTTACCATTAAG+GGG - chr7_1:40687166-40687185 Msa1019260:intron 25.0%
! GTTAACACTAAAAACAAAGA+TGG + chr7_1:40687617-40687636 None:intergenic 25.0%
!! TTTTTCTTGTGATTTCCAAT+AGG - chr7_1:40687643-40687662 Msa1019260:intron 25.0%
! GAAGAAATTACAGAAAAAGA+AGG - chr7_1:40682284-40682303 Msa1019260:intron 25.0%
! TACCAAATACCAATATCTAT+GGG + chr7_1:40687783-40687802 None:intergenic 25.0%
!! TTCTTTGGTTTAGTGTTAAT+TGG - chr7_1:40687853-40687872 Msa1019260:intron 25.0%
TTGTATGAACAGGTATTTCT+AGG - chr7_1:40679985-40680004 Msa1019260:intron 30.0%
! TGTATGAACAGGTATTTCTA+GGG - chr7_1:40679986-40680005 Msa1019260:intron 30.0%
TTCGAAAAGAAAAACAAGCA+GGG + chr7_1:40680126-40680145 None:intergenic 30.0%
ATTCGAAAAGAAAAACAAGC+AGG + chr7_1:40680127-40680146 None:intergenic 30.0%
TAATAAAGACAAGCTAATCC+AGG + chr7_1:40680612-40680631 None:intergenic 30.0%
AAAGTCTTCCCAATATCTAT+AGG - chr7_1:40680777-40680796 Msa1019260:intron 30.0%
TATTCATATAAGAGTGGAAG+TGG + chr7_1:40681600-40681619 None:intergenic 30.0%
! ATGGGTTATTCATATAAGAG+TGG + chr7_1:40681606-40681625 None:intergenic 30.0%
TATGCCTATGTTTACCAATA+AGG - chr7_1:40681742-40681761 Msa1019260:intron 30.0%
ATGCCTATGTTTACCAATAA+GGG - chr7_1:40681743-40681762 Msa1019260:intron 30.0%
AATCATAACTTACCCCTTAT+TGG + chr7_1:40681759-40681778 None:intergenic 30.0%
! GGGTAAGTTATGATTTTTGT+TGG - chr7_1:40681764-40681783 Msa1019260:intron 30.0%
GGATATTCTGTGTTTCTTAA+AGG - chr7_1:40681785-40681804 Msa1019260:intron 30.0%
!!! ATGTTTTGATTTGAACATCC+AGG - chr7_1:40681962-40681981 Msa1019260:intron 30.0%
!! CTGAAAAATATTCTGAGACA+AGG + chr7_1:40682171-40682190 None:intergenic 30.0%
GTGAACACTAAAAACAAAGA+TGG + chr7_1:40682200-40682219 None:intergenic 30.0%
! TTTTCCTTGTGATTTCCAAT+AGG - chr7_1:40682226-40682245 Msa1019260:intron 30.0%
TTCTTTGGTTGAGTGTTAAT+TGG - chr7_1:40682403-40682422 Msa1019260:intron 30.0%
AGTTTGCATAAAACTAGTAC+AGG + chr7_1:40682432-40682451 None:intergenic 30.0%
! ATCCAAATTTTGCTCTTTAG+TGG - chr7_1:40682454-40682473 Msa1019260:CDS 30.0%
AACCACTAAAGAGCAAAATT+TGG + chr7_1:40682459-40682478 None:intergenic 30.0%
TGTAAACATTAAACTCCAGT+AGG + chr7_1:40682494-40682513 None:intergenic 30.0%
TCACAAACTAGTACTTCATT+TGG - chr7_1:40682564-40682583 Msa1019260:intron 30.0%
! AACACCTTCAACAATTTTAC+TGG - chr7_1:40682595-40682614 Msa1019260:intron 30.0%
TATGCCAGTAAAATTGTTGA+AGG + chr7_1:40682602-40682621 None:intergenic 30.0%
!!! GTTTTTTACATGACAGAACA+AGG + chr7_1:40682660-40682679 None:intergenic 30.0%
CAAAATATAAGGTAGTTGAG+AGG - chr7_1:40682817-40682836 Msa1019260:intron 30.0%
CATATCATCAAATGTACAAC+AGG - chr7_1:40682921-40682940 Msa1019260:intron 30.0%
!! GGCTTTATTGTCATATATAG+AGG + chr7_1:40683038-40683057 None:intergenic 30.0%
ACAAAGTTGAACAGAATATG+TGG + chr7_1:40683187-40683206 None:intergenic 30.0%
ACATATTCTGTTCAACTTTG+TGG - chr7_1:40683186-40683205 Msa1019260:intron 30.0%
!!! TGCATTTTAAAGTCAGTATC+CGG + chr7_1:40683373-40683392 None:intergenic 30.0%
CTTTGATAGGAAAATTGTAG+TGG - chr7_1:40683612-40683631 Msa1019260:intron 30.0%
AGAAATCTAGATGTAGTCAA+AGG - chr7_1:40683676-40683695 Msa1019260:intron 30.0%
ATAGATATCGGGATAAATTC+GGG + chr7_1:40683961-40683980 None:intergenic 30.0%
GCAGTGTAAATATAGATATC+GGG + chr7_1:40683972-40683991 None:intergenic 30.0%
TGAATAAAAGGCTGAATTAC+TGG + chr7_1:40684018-40684037 None:intergenic 30.0%
! AATTCAGCCTTTTATTCAGT+TGG - chr7_1:40684020-40684039 Msa1019260:intron 30.0%
TAATGGTCCAACTGAATAAA+AGG + chr7_1:40684030-40684049 None:intergenic 30.0%
! ATAACGTAGTGGAGAATATT+TGG - chr7_1:40684281-40684300 Msa1019260:intron 30.0%
! TAACGTAGTGGAGAATATTT+GGG - chr7_1:40684282-40684301 Msa1019260:intron 30.0%
CTAAAGTAAGATTTGAACCT+TGG - chr7_1:40684313-40684332 Msa1019260:intron 30.0%
!!! GTTTCAAGAGATGTCTTTTT+TGG + chr7_1:40684420-40684439 None:intergenic 30.0%
! TTATCTAAAACCCATGGTTA+TGG - chr7_1:40684648-40684667 Msa1019260:intron 30.0%
! TATCTAAAACCCATGGTTAT+GGG - chr7_1:40684649-40684668 Msa1019260:intron 30.0%
CCTAATCACATATATCAAAC+GGG + chr7_1:40684702-40684721 None:intergenic 30.0%
CCCTAATCACATATATCAAA+CGG + chr7_1:40684703-40684722 None:intergenic 30.0%
CCGTTTGATATATGTGATTA+GGG - chr7_1:40684700-40684719 Msa1019260:intron 30.0%
TCTATGTCATCTATTGTGTA+TGG - chr7_1:40684839-40684858 Msa1019260:intron 30.0%
TGCTTGATTTAGGCTATATT+AGG - chr7_1:40684892-40684911 Msa1019260:intron 30.0%
TGCAAATAGTGGTTGAAATA+GGG + chr7_1:40685156-40685175 None:intergenic 30.0%
ATGCAAATAGTGGTTGAAAT+AGG + chr7_1:40685157-40685176 None:intergenic 30.0%
TTGATCTATCATGCAAATAG+TGG + chr7_1:40685167-40685186 None:intergenic 30.0%
GCACTTAATTATTCAAATGC+TGG - chr7_1:40685482-40685501 Msa1019260:intron 30.0%
AAAAGCTGTTTAACCAAACA+GGG + chr7_1:40685566-40685585 None:intergenic 30.0%
AAAAAGCTGTTTAACCAAAC+AGG + chr7_1:40685567-40685586 None:intergenic 30.0%
! TGGTTTTCATAAGTTCATCT+AGG - chr7_1:40685756-40685775 Msa1019260:CDS 30.0%
! GGTTTTCATAAGTTCATCTA+GGG - chr7_1:40685757-40685776 Msa1019260:CDS 30.0%
AAAAACTAGCCAATCCAAAT+GGG + chr7_1:40685783-40685802 None:intergenic 30.0%
TATAATTCATAAGCCGGTAA+AGG + chr7_1:40685910-40685929 None:intergenic 30.0%
TGTGTGTATAATTCATAAGC+CGG + chr7_1:40685916-40685935 None:intergenic 30.0%
! TATTTTGCAAGACTGTTTAG+GGG + chr7_1:40685998-40686017 None:intergenic 30.0%
TCAAATAATCCAATCCAAAC+AGG - chr7_1:40686035-40686054 Msa1019260:intron 30.0%
TCACATTTAACAGGAAAGAA+CGG + chr7_1:40686407-40686426 None:intergenic 30.0%
CTTTCCTGTTAAATGTGATT+AGG - chr7_1:40686409-40686428 Msa1019260:intron 30.0%
TAGGTTATTCATATAAAGGG+TGG + chr7_1:40687147-40687166 None:intergenic 30.0%
! TAACTTAAAGTACCCCTTAA+TGG + chr7_1:40687181-40687200 None:intergenic 30.0%
! ATTACGAACTTTTGACAACA+TGG + chr7_1:40687244-40687263 None:intergenic 30.0%
! TGATAACAAAGTACCCTTAA+TGG + chr7_1:40687298-40687317 None:intergenic 30.0%
!!! ATGTTTTGATTTGAACATCC+AGG - chr7_1:40681962-40681981 Msa1019260:intron 30.0%
AAACAAAGATGGAGTTTAAG+CGG + chr7_1:40687606-40687625 None:intergenic 30.0%
CATTTGTATCCCATAGATAT+TGG - chr7_1:40687771-40687790 Msa1019260:CDS 30.0%
ATCCCATAGATATTGGTATT+TGG - chr7_1:40687778-40687797 Msa1019260:CDS 30.0%
GTACCAAATACCAATATCTA+TGG + chr7_1:40682367-40682386 None:intergenic 30.0%
! AATGTTTTGCAACTGTTAGT+TGG - chr7_1:40687935-40687954 Msa1019260:intron 30.0%
TTTGCATATAAGACTAGTGA+AGG + chr7_1:40687964-40687983 None:intergenic 30.0%
TTCACCTTCATCTCTGTTAT+TGG - chr7_1:40679891-40679910 Msa1019260:three_prime_UTR 35.0%
AGATCCAATAACAGAGATGA+AGG + chr7_1:40679898-40679917 None:intergenic 35.0%
!! CATGTGTTTGTTGTATGAAC+AGG - chr7_1:40679975-40679994 Msa1019260:intron 35.0%
TCGAAAAGAAAAACAAGCAG+GGG + chr7_1:40680125-40680144 None:intergenic 35.0%
!! AGCTGTTTTCATAAGTTCTC+TGG - chr7_1:40680459-40680478 Msa1019260:intron 35.0%
CTAATTCTCATTGTTCTTCC+TGG - chr7_1:40680591-40680610 Msa1019260:intron 35.0%
!! TGTTTTTGTTGGGGTTGTAT+AGG - chr7_1:40680994-40681013 Msa1019260:CDS 35.0%
ACAACCCAAACACATATAAC+AGG + chr7_1:40681370-40681389 None:intergenic 35.0%
AATAATCCACAGGCCAATAT+AGG + chr7_1:40681403-40681422 None:intergenic 35.0%
AAACATAGGCATATGAAGAG+TGG + chr7_1:40681735-40681754 None:intergenic 35.0%
TGCCTATGTTTACCAATAAG+GGG - chr7_1:40681744-40681763 Msa1019260:intron 35.0%
TACCCCTTATTGGTAAACAT+AGG + chr7_1:40681749-40681768 None:intergenic 35.0%
! GGTACTTTGTCATCATTTTG+TGG - chr7_1:40681872-40681891 Msa1019260:intron 35.0%
!!! TTTTGATTTGAACATCCAGG+AGG - chr7_1:40681965-40681984 Msa1019260:intron 35.0%
TGTACCTATTGGAAATCACA+AGG + chr7_1:40682233-40682252 None:intergenic 35.0%
TCCAATAGGTACATTCTTGA+AGG - chr7_1:40682240-40682259 Msa1019260:intron 35.0%
ACCTTCAAGAATGTACCTAT+TGG + chr7_1:40682244-40682263 None:intergenic 35.0%
TAGGTACATTCTTGAAGGTA+AGG - chr7_1:40682245-40682264 Msa1019260:intron 35.0%
CAAACTAGTACTTCATTTGG+TGG - chr7_1:40682567-40682586 Msa1019260:intron 35.0%
TTGAGAGGAACTGAAAAACT+GGG - chr7_1:40682832-40682851 Msa1019260:intron 35.0%
TCGAAGCAATATACATGCAT+TGG - chr7_1:40683081-40683100 Msa1019260:intron 35.0%
AAGATAAAGACTTACGCTAG+TGG - chr7_1:40683129-40683148 Msa1019260:intron 35.0%
AGATAAAGACTTACGCTAGT+GGG - chr7_1:40683130-40683149 Msa1019260:intron 35.0%
CAGAATATGTGGCTTCATAA+GGG + chr7_1:40683176-40683195 None:intergenic 35.0%
ACAGAATATGTGGCTTCATA+AGG + chr7_1:40683177-40683196 None:intergenic 35.0%
!! TTGTTGATTTCTCTTCGGAT+TGG + chr7_1:40683314-40683333 None:intergenic 35.0%
!! GCTACTTGTTGATTTCTCTT+CGG + chr7_1:40683319-40683338 None:intergenic 35.0%
!! GGATACTGACTTTAAAATGC+AGG - chr7_1:40683372-40683391 Msa1019260:intron 35.0%
!! CTTTAAAATGCAGGTTGATG+CGG - chr7_1:40683381-40683400 Msa1019260:intron 35.0%
!! TTTAAAATGCAGGTTGATGC+GGG - chr7_1:40683382-40683401 Msa1019260:intron 35.0%
! TGTGTTGTTCAAAACCAAGA+TGG - chr7_1:40683436-40683455 Msa1019260:intron 35.0%
ACATAATTGTCTCACCATCT+TGG + chr7_1:40683453-40683472 None:intergenic 35.0%
CGAAGAAGTCATGTTAATGA+AGG - chr7_1:40683725-40683744 Msa1019260:intron 35.0%
TCATGTTAATGAAGGAAGAG+TGG - chr7_1:40683733-40683752 Msa1019260:intron 35.0%
TAGTCATCATGTACACTACT+TGG - chr7_1:40683884-40683903 Msa1019260:intron 35.0%
TCAGTTGGACCATTATAACT+AGG - chr7_1:40684035-40684054 Msa1019260:intron 35.0%
TAACTAAAGATGTGCAGTGA+TGG + chr7_1:40684199-40684218 None:intergenic 35.0%
!! TAAGTTGTTTTCAGGGTATG+AGG - chr7_1:40684598-40684617 Msa1019260:intron 35.0%
!! AAGTTGTTTTCAGGGTATGA+GGG - chr7_1:40684599-40684618 Msa1019260:intron 35.0%
! GAGCAATTATCTAAAACCCA+TGG - chr7_1:40684642-40684661 Msa1019260:intron 35.0%
ATCAAACGGGTCAACAAATT+GGG + chr7_1:40684689-40684708 None:intergenic 35.0%
TATCAAACGGGTCAACAAAT+TGG + chr7_1:40684690-40684709 None:intergenic 35.0%
CCCGTTTGATATATGTGATT+AGG - chr7_1:40684699-40684718 Msa1019260:intron 35.0%
CATAGACATATGCAAAAACC+AGG + chr7_1:40684825-40684844 None:intergenic 35.0%
ATCAACATGGTTTATGAAGC+TGG - chr7_1:40685082-40685101 Msa1019260:intron 35.0%
TTAGCTAATGCTTGTGAAGT+AGG + chr7_1:40685201-40685220 None:intergenic 35.0%
! TCTTCATCTCTGTCTGTTTT+TGG - chr7_1:40685262-40685281 Msa1019260:intron 35.0%
! TATTTGTTGGAGTTCTCATG+TGG - chr7_1:40685308-40685327 Msa1019260:intron 35.0%
CAAAAACTAGCCAATCCAAA+TGG + chr7_1:40685784-40685803 None:intergenic 35.0%
AACTCAAAAATAAGCCAAGC+CGG - chr7_1:40685968-40685987 Msa1019260:intron 35.0%
AGATTTATCATCTTCCCTCT+AGG + chr7_1:40686272-40686291 None:intergenic 35.0%
!! TGTTTTTGTCGGGTTTGTAT+AGG - chr7_1:40686539-40686558 Msa1019260:CDS 35.0%
ATATATGCCTTCAGGTATAG+TGG - chr7_1:40686940-40686959 Msa1019260:intron 35.0%
AAAGTAAGAAAACCATCCAC+AGG + chr7_1:40686966-40686985 None:intergenic 35.0%
TGAAATTGTAAGTAGGTGCT+AGG - chr7_1:40687053-40687072 Msa1019260:intron 35.0%
!!! TTTTGATTTGAACATCCAGG+AGG - chr7_1:40681965-40681984 Msa1019260:intron 35.0%
TCCAATAGGTACATTCTTGA+AGG - chr7_1:40682240-40682259 Msa1019260:intron 35.0%
ACCTTCAAGAATGTACCTAT+TGG + chr7_1:40682244-40682263 None:intergenic 35.0%
TAGGTACATTCTTGAAGGTA+AGG - chr7_1:40682245-40682264 Msa1019260:intron 35.0%
AAGGTGAATCATACCCATCT+TGG + chr7_1:40679879-40679898 None:intergenic 40.0%
CAGGGGCTGATAATTGAAAA+TGG + chr7_1:40680108-40680127 None:intergenic 40.0%
TTCAGTTTGAAGGCTCTGTT+TGG - chr7_1:40680226-40680245 Msa1019260:intron 40.0%
TGTTCAAATGCTGTCTGTCT+TGG - chr7_1:40680387-40680406 Msa1019260:CDS 40.0%
!!! GCCACTCTCAATTAGTTTTC+TGG - chr7_1:40680635-40680654 Msa1019260:intron 40.0%
GCCAGAAAACTAATTGAGAG+TGG + chr7_1:40680639-40680658 None:intergenic 40.0%
! AATCAAAGGAGCATAGAGAC+AGG + chr7_1:40680880-40680899 None:intergenic 40.0%
TTAGAGGTGGCAATGTGAAA+TGG - chr7_1:40681084-40681103 Msa1019260:CDS 40.0%
GAAATGGAGAGCTCTTAGAT+TGG - chr7_1:40681100-40681119 Msa1019260:CDS 40.0%
TGGACACTGGAAATTTCTCT+TGG - chr7_1:40681120-40681139 Msa1019260:CDS 40.0%
GGACACTGGAAATTTCTCTT+GGG - chr7_1:40681121-40681140 Msa1019260:CDS 40.0%
GACACTGGAAATTTCTCTTG+GGG - chr7_1:40681122-40681141 Msa1019260:CDS 40.0%
AAATTTCTCTTGGGGTAGTG+AGG - chr7_1:40681130-40681149 Msa1019260:CDS 40.0%
ACGAACAAGCTCATTGTTTG+AGG + chr7_1:40681198-40681217 None:intergenic 40.0%
TGAAGATACCACTGCTTGAA+TGG + chr7_1:40681266-40681285 None:intergenic 40.0%
AAAGAAAACAGCAGCCAAGA+AGG - chr7_1:40681313-40681332 Msa1019260:intron 40.0%
! TATATGCCTATATTGGCCTG+TGG - chr7_1:40681394-40681413 Msa1019260:intron 40.0%
! ATCGTGTCGATATTGTACGT+AGG - chr7_1:40681493-40681512 Msa1019260:intron 40.0%
CTGTGTCTACTGTCTACTTA+TGG - chr7_1:40681682-40681701 Msa1019260:intron 40.0%
GTTCATGTTACTCTACCTAC+TGG - chr7_1:40682476-40682495 Msa1019260:intron 40.0%
! AATTTTACTGGCATAGCCAG+TGG - chr7_1:40682607-40682626 Msa1019260:intron 40.0%
ACAATTGAAAAGGTTGCCAC+TGG + chr7_1:40682626-40682645 None:intergenic 40.0%
GTTGAGAGGAACTGAAAAAC+TGG - chr7_1:40682831-40682850 Msa1019260:intron 40.0%
TGGGAAAAATGCAACAGATC+AGG - chr7_1:40682851-40682870 Msa1019260:intron 40.0%
TATATTGCTTCGATGAGGCT+AGG + chr7_1:40683074-40683093 None:intergenic 40.0%
GCATGTATATTGCTTCGATG+AGG + chr7_1:40683079-40683098 None:intergenic 40.0%
GTTCAACTTTGTGGAATGTG+TGG - chr7_1:40683195-40683214 Msa1019260:intron 40.0%
!! AGAAGCTTTGGGAGTTTGTT+GGG - chr7_1:40683516-40683535 Msa1019260:intron 40.0%
CAGTTGCTCAATGCTTTGAT+AGG - chr7_1:40683599-40683618 Msa1019260:intron 40.0%
ACATCAAGAAGTCGAAGTCA+TGG - chr7_1:40683788-40683807 Msa1019260:intron 40.0%
CTGAATTACTGGAATTCAGG+TGG + chr7_1:40684007-40684026 None:intergenic 40.0%
AGGCTGAATTACTGGAATTC+AGG + chr7_1:40684010-40684029 None:intergenic 40.0%
AACTAGGAAACAGTTTCGTG+AGG - chr7_1:40684051-40684070 Msa1019260:intron 40.0%
ACTAGGAAACAGTTTCGTGA+GGG - chr7_1:40684052-40684071 Msa1019260:intron 40.0%
TCGCGAAAGAAATTATCACG+AGG + chr7_1:40684078-40684097 None:intergenic 40.0%
ACACACAAGTGATAGAACCA+AGG + chr7_1:40684333-40684352 None:intergenic 40.0%
CAGATAAAGCCCATAACCAT+GGG + chr7_1:40684661-40684680 None:intergenic 40.0%
!! AGAAGCAAGTTGATGCTCTT+TGG - chr7_1:40685002-40685021 Msa1019260:intron 40.0%
!! GAAGCAAGTTGATGCTCTTT+GGG - chr7_1:40685003-40685022 Msa1019260:intron 40.0%
!! AAGCAAGTTGATGCTCTTTG+GGG - chr7_1:40685004-40685023 Msa1019260:intron 40.0%
!! CATGTGGTTGTTTCTTGAAC+AGG - chr7_1:40685324-40685343 Msa1019260:intron 40.0%
CAAGAGATTCTATGCACAAG+AGG - chr7_1:40685352-40685371 Msa1019260:intron 40.0%
TTCAGTATTAAGGCCCTGTT+TGG - chr7_1:40685550-40685569 Msa1019260:CDS 40.0%
GAACTAATTCAGCTCATCCA+GGG + chr7_1:40686124-40686143 None:intergenic 40.0%
AGAACTAATTCAGCTCATCC+AGG + chr7_1:40686125-40686144 None:intergenic 40.0%
! GATGAGCTGAATTAGTTCTC+TGG - chr7_1:40686126-40686145 Msa1019260:intron 40.0%
! TACAAAGGAGGTATACCTAG+AGG - chr7_1:40686254-40686273 Msa1019260:intron 40.0%
! ACAAAGGAGGTATACCTAGA+GGG - chr7_1:40686255-40686274 Msa1019260:intron 40.0%
TATCATCACCAAAAGCGAGT+CGG + chr7_1:40686487-40686506 None:intergenic 40.0%
TTAGAGGTGGCAATGTGAAA+TGG - chr7_1:40681084-40681103 Msa1019260:CDS 40.0%
GAAATGGAGAGCTCTTAGAT+TGG - chr7_1:40681100-40681119 Msa1019260:CDS 40.0%
ACGAACAAGCTCATTGTTTG+AGG + chr7_1:40681198-40681217 None:intergenic 40.0%
TGAAGATACCACTGCTTGAA+TGG + chr7_1:40681266-40681285 None:intergenic 40.0%
! ACTATGGTGTTGAAGTTGGT+AGG - chr7_1:40686833-40686852 Msa1019260:intron 40.0%
AAAGAAAACAGCAGCCAAGA+AGG - chr7_1:40681313-40681332 Msa1019260:intron 40.0%
GCTGTATGATATATGCCTTC+AGG - chr7_1:40686932-40686951 Msa1019260:intron 40.0%
! AGGGTACTTTGTTATCACTG+TGG - chr7_1:40687301-40687320 Msa1019260:intron 40.0%
CATTCTTGAAGGTAAGGAGT+TGG - chr7_1:40687668-40687687 Msa1019260:intron 40.0%
ACACAGAATCAGCAGAGAGA+CGG - chr7_1:40679818-40679837 Msa1019260:three_prime_UTR 45.0%
GTGAATCATACCCATCTTGG+CGG + chr7_1:40679876-40679895 None:intergenic 45.0%
GTCTCACAAACTCATGACAG+TGG - chr7_1:40680486-40680505 Msa1019260:intron 45.0%
CAAATAAGGCAAGTCCACAC+AGG - chr7_1:40680516-40680535 Msa1019260:intron 45.0%
CTAGACAGCTTAGTGTTTGC+TGG + chr7_1:40681038-40681057 None:intergenic 45.0%
TGTCTAGCAACAAGACAGTC+AGG - chr7_1:40681051-40681070 Msa1019260:intron 45.0%
TCACATTGCCACCTCTAACA+CGG + chr7_1:40681082-40681101 None:intergenic 45.0%
AGAGCTCTTAGATTGGACAC+TGG - chr7_1:40681107-40681126 Msa1019260:CDS 45.0%
AGCAGCATCAACTTGGACAA+TGG + chr7_1:40681243-40681262 None:intergenic 45.0%
TGAATGGAGCAGCATCAACT+TGG + chr7_1:40681250-40681269 None:intergenic 45.0%
CAGTGGTATCTTCAGCACTA+CGG - chr7_1:40681272-40681291 Msa1019260:intron 45.0%
! ACTACGGTGTTGAAGTTGGT+AGG - chr7_1:40681288-40681307 Msa1019260:intron 45.0%
CGATATTGTACGTAGGTGCT+AGG - chr7_1:40681500-40681519 Msa1019260:intron 45.0%
ACTACTACACAGCAGAATGC+AGG + chr7_1:40681908-40681927 None:intergenic 45.0%
TTGAGCAGCGTCAGAAAGAT+AGG - chr7_1:40682039-40682058 Msa1019260:intron 45.0%
TCCCACATTGAAGAGCAGTT+CGG - chr7_1:40682071-40682090 Msa1019260:intron 45.0%
ACCGAACTGCTCTTCAATGT+GGG + chr7_1:40682075-40682094 None:intergenic 45.0%
CATTCTTGAAGGTAAGGAGC+TGG - chr7_1:40682251-40682270 Msa1019260:intron 45.0%
CTTGATACACACTACGATGC+AGG - chr7_1:40682679-40682698 Msa1019260:intron 45.0%
CTTCCTTGGAAATCTGATCG+GGG + chr7_1:40683261-40683280 None:intergenic 45.0%
GCTTCCTTGGAAATCTGATC+GGG + chr7_1:40683262-40683281 None:intergenic 45.0%
GGCTTCCTTGGAAATCTGAT+CGG + chr7_1:40683263-40683282 None:intergenic 45.0%
GAAGTCACAGATGAACTTCG+TGG + chr7_1:40683284-40683303 None:intergenic 45.0%
AACAAGTAGCTCCAGTTCAG+CGG - chr7_1:40683329-40683348 Msa1019260:intron 45.0%
TCAGTATCCGGTGTATTGTC+TGG + chr7_1:40683361-40683380 None:intergenic 45.0%
! CATCAGTATTGAACCGTTGC+TGG - chr7_1:40683492-40683511 Msa1019260:intron 45.0%
!! CAGAAGCTTTGGGAGTTTGT+TGG - chr7_1:40683515-40683534 Msa1019260:intron 45.0%
!! GAAGCTTTGGGAGTTTGTTG+GGG - chr7_1:40683517-40683536 Msa1019260:intron 45.0%
!! AAGCTTTGGGAGTTTGTTGG+GGG - chr7_1:40683518-40683537 Msa1019260:intron 45.0%
AATTGGCAGTGGCAAAACAG+TGG - chr7_1:40683545-40683564 Msa1019260:intron 45.0%
GCAGATAAAGCCCATAACCA+TGG + chr7_1:40684662-40684681 None:intergenic 45.0%
ATCGCACAACACAGAAGAAG+CGG - chr7_1:40684727-40684746 Msa1019260:intron 45.0%
AGAGCAAGCTACGTCAAGAT+GGG - chr7_1:40684780-40684799 Msa1019260:intron 45.0%
GTTGTGAATGCAATACGGTC+TGG - chr7_1:40685112-40685131 Msa1019260:intron 45.0%
! AAGTTCATCTAGGGCCCATT+TGG - chr7_1:40685766-40685785 Msa1019260:CDS 45.0%
AAACAGATTAGGGGCCTGTT+TGG + chr7_1:40686052-40686071 None:intergenic 45.0%
GGTTTGTATAGGTACGAGCT+TGG - chr7_1:40686550-40686569 Msa1019260:CDS 45.0%
GTTGCTAGACAGCTTAGTGT+TGG + chr7_1:40681042-40681061 None:intergenic 45.0%
TGTCTAGCAACAAGACAGTC+AGG - chr7_1:40681051-40681070 Msa1019260:intron 45.0%
TCACATTGCCACCTCTAACA+CGG + chr7_1:40681082-40681101 None:intergenic 45.0%
AGAGCTCTTAGATTGGACAC+TGG - chr7_1:40681107-40681126 Msa1019260:CDS 45.0%
TGGACACTGGAAATTTCTCG+TGG - chr7_1:40686665-40686684 Msa1019260:CDS 45.0%
GGACACTGGAAATTTCTCGT+GGG - chr7_1:40686666-40686685 Msa1019260:CDS 45.0%
GACACTGGAAATTTCTCGTG+GGG - chr7_1:40686667-40686686 Msa1019260:CDS 45.0%
AAATTTCTCGTGGGGTAGTG+AGG - chr7_1:40686675-40686694 Msa1019260:CDS 45.0%
TGCAGCATCAACTTGGACAA+TGG + chr7_1:40686788-40686807 None:intergenic 45.0%
TGAATGGTGCAGCATCAACT+TGG + chr7_1:40686795-40686814 None:intergenic 45.0%
CAGTGGTATCTTCAGCACTA+TGG - chr7_1:40681272-40681291 Msa1019260:intron 45.0%
! CAGCACTATGGTGTTGAAGT+TGG - chr7_1:40686829-40686848 Msa1019260:intron 45.0%
TACCTCTGCAGAATCCTTCT+TGG + chr7_1:40686875-40686894 None:intergenic 45.0%
TTGAGCAGCGTCAGAAAGAT+AGG - chr7_1:40682039-40682058 Msa1019260:intron 45.0%
TCCCACATTGAAGAGCAGTT+CGG - chr7_1:40682071-40682090 Msa1019260:intron 45.0%
ATGGAGTTTAAGCGGAGACA+AGG + chr7_1:40687598-40687617 None:intergenic 45.0%
!! TTAAATTTAAATAATTAACT+AGG + chr7_1:40686517-40686536 None:intergenic 5.0%
CTAGGGATTCCATGCACAAG+AGG - chr7_1:40680003-40680022 Msa1019260:intron 50.0%
AAACAGATTAGGGGCCTGTG+TGG + chr7_1:40680533-40680552 None:intergenic 50.0%
GGGTTGTATAGGTACGAGCT+TGG - chr7_1:40681005-40681024 Msa1019260:CDS 50.0%
! ACAGCTTAGTGTTTGCTGGC+TGG + chr7_1:40681034-40681053 None:intergenic 50.0%
CTAGCAACAAGACAGTCAGG+AGG - chr7_1:40681054-40681073 Msa1019260:intron 50.0%
CAAGACTCGTCTTCTCGATG+TGG - chr7_1:40681163-40681182 Msa1019260:CDS 50.0%
GCTTGTTCGTACTCAGACTC+TGG - chr7_1:40681208-40681227 Msa1019260:CDS 50.0%
ATGCTGCTCCATTCAAGCAG+TGG - chr7_1:40681255-40681274 Msa1019260:CDS 50.0%
! CAGCACTACGGTGTTGAAGT+TGG - chr7_1:40681284-40681303 Msa1019260:intron 50.0%
AGCCAAGAAGGATTCTGCAG+AGG - chr7_1:40681325-40681344 Msa1019260:intron 50.0%
CACCTCTGCAGAATCCTTCT+TGG + chr7_1:40681330-40681349 None:intergenic 50.0%
! GCTCAAGTTTTCTCTGCACG+TGG + chr7_1:40682025-40682044 None:intergenic 50.0%
CACCGAACTGCTCTTCAATG+TGG + chr7_1:40682076-40682095 None:intergenic 50.0%
CACATTGAAGAGCAGTTCGG+TGG - chr7_1:40682074-40682093 Msa1019260:intron 50.0%
! ATTGAAGAGCAGTTCGGTGG+TGG - chr7_1:40682077-40682096 Msa1019260:intron 50.0%
CGATGAGGCTAGGATGATGT+CGG + chr7_1:40683064-40683083 None:intergenic 50.0%
CAACCCCGATCAGATTTCCA+AGG - chr7_1:40683255-40683274 Msa1019260:intron 50.0%
GATGAACTTCGTGGCTTCCT+TGG + chr7_1:40683275-40683294 None:intergenic 50.0%
GCTGGAACCAGACAATACAC+CGG - chr7_1:40683351-40683370 Msa1019260:intron 50.0%
TCAGCGATGACGTGACATGT+TGG - chr7_1:40683410-40683429 Msa1019260:intron 50.0%
CAGCGATGACGTGACATGTT+GGG - chr7_1:40683411-40683430 Msa1019260:intron 50.0%
AGCGATGACGTGACATGTTG+GGG - chr7_1:40683412-40683431 Msa1019260:intron 50.0%
!! AGTTTGTTGGGGGCTGCAAT+TGG - chr7_1:40683528-40683547 Msa1019260:intron 50.0%
AGTGGCAAAACAGTGGAGGA+AGG - chr7_1:40683552-40683571 Msa1019260:intron 50.0%
AACACAGAAGAAGCGGAGAG+AGG - chr7_1:40684734-40684753 Msa1019260:intron 50.0%
ACACAGAAGAAGCGGAGAGA+GGG - chr7_1:40684735-40684754 Msa1019260:intron 50.0%
GAGAGCAAGCTACGTCAAGA+TGG - chr7_1:40684779-40684798 Msa1019260:intron 50.0%
!! GTTGATGCTCTTTGGGGCTT+AGG - chr7_1:40685010-40685029 Msa1019260:intron 50.0%
TGCAATACGGTCTGGCCTAA+TGG - chr7_1:40685120-40685139 Msa1019260:intron 50.0%
GCAATACGGTCTGGCCTAAT+GGG - chr7_1:40685121-40685140 Msa1019260:intron 50.0%
TCTGGCCTAATGGGAGCTTA+TGG - chr7_1:40685130-40685149 Msa1019260:intron 50.0%
TAGGGCCATAAGCTCCCATT+AGG + chr7_1:40685138-40685157 None:intergenic 50.0%
! CATCTAGGGCCCATTTGGAT+TGG - chr7_1:40685771-40685790 Msa1019260:CDS 50.0%
AAGACTGTTTAGGGGCAGTC+CGG + chr7_1:40685990-40686009 None:intergenic 50.0%
GATTAGGGGCCTGTTTGGAT+TGG + chr7_1:40686047-40686066 None:intergenic 50.0%
CTTATTCTCACTGTGCTCCC+TGG - chr7_1:40686104-40686123 Msa1019260:intron 50.0%
!! CTAGACAGCTTAGTGTTGGC+TGG + chr7_1:40686583-40686602 None:intergenic 50.0%
GTCAGGAGAATCCGTGTTAG+AGG - chr7_1:40686613-40686632 Msa1019260:CDS 50.0%
AGGAGAATCCGTGTTAGAGG+TGG - chr7_1:40686616-40686635 Msa1019260:CDS 50.0%
CAAGACTCGTCTTCTCGATG+TGG - chr7_1:40681163-40681182 Msa1019260:CDS 50.0%
GCTTGTTCGTACTCAGACTC+TGG - chr7_1:40681208-40681227 Msa1019260:CDS 50.0%
ATGCTGCACCATTCAAGCAG+TGG - chr7_1:40686800-40686819 Msa1019260:CDS 50.0%
AGCCAAGAAGGATTCTGCAG+AGG - chr7_1:40681325-40681344 Msa1019260:intron 50.0%
! GCTCAAGTTTTCTCTGCACG+TGG + chr7_1:40682025-40682044 None:intergenic 50.0%
GCCGAACTGCTCTTCAATGT+GGG + chr7_1:40687502-40687521 None:intergenic 50.0%
CACATTGAAGAGCAGTTCGG+CGG - chr7_1:40682074-40682093 Msa1019260:intron 50.0%
GAATCAGCAGAGAGACGGAG+AGG - chr7_1:40679823-40679842 Msa1019260:three_prime_UTR 55.0%
CAGAGAGACGGAGAGGAAGA+GGG - chr7_1:40679830-40679849 Msa1019260:three_prime_UTR 55.0%
AGACGGAGAGGAAGAGGGTT+AGG - chr7_1:40679835-40679854 Msa1019260:three_prime_UTR 55.0%
AGAGCAAGCTCCGCCAAGAT+GGG - chr7_1:40679863-40679882 Msa1019260:three_prime_UTR 55.0%
GCTCTTCTTCTTGCCACCAG+TGG + chr7_1:40680033-40680052 None:intergenic 55.0%
CTGGTGGCAAGAAGAAGAGC+TGG - chr7_1:40680033-40680052 Msa1019260:three_prime_UTR 55.0%
GTCAGGAGGATCCGTGTTAG+AGG - chr7_1:40681068-40681087 Msa1019260:CDS 55.0%
AGGAGGATCCGTGTTAGAGG+TGG - chr7_1:40681071-40681090 Msa1019260:CDS 55.0%
CAGCAACAACTTCAGCCTCC+TGG + chr7_1:40681983-40682002 None:intergenic 55.0%
ACCAGGGCGAGATGAAATGC+AGG + chr7_1:40682114-40682133 None:intergenic 55.0%
TCATCTCGCCCTGGTCAATG+TGG - chr7_1:40682119-40682138 Msa1019260:intron 55.0%
GTCAATGTGGCAGGGCTGAT+GGG - chr7_1:40682132-40682151 Msa1019260:intron 55.0%
AGGCTAGGATGATGTCGGTG+AGG + chr7_1:40683059-40683078 None:intergenic 55.0%
ACCGTTGCTGGCAGAAGCTT+TGG - chr7_1:40683504-40683523 Msa1019260:intron 55.0%
CCCAAAGCTTCTGCCAGCAA+CGG + chr7_1:40683508-40683527 None:intergenic 55.0%
CCGTTGCTGGCAGAAGCTTT+GGG - chr7_1:40683505-40683524 Msa1019260:intron 55.0%
TGGCAGTGGCAAAACAGTGG+AGG - chr7_1:40683548-40683567 Msa1019260:intron 55.0%
GCTCTTCTTCTTGCCACCAG+TGG + chr7_1:40680033-40680052 None:intergenic 55.0%
CTGGTGGCAAGAAGAAGAGC+TGG - chr7_1:40680033-40680052 Msa1019260:three_prime_UTR 55.0%
!!! TGGATGTGCCGACTCGCTTT+TGG - chr7_1:40686476-40686495 Msa1019260:intron 55.0%
!! ACAGCTTAGTGTTGGCTGGC+TGG + chr7_1:40686579-40686598 None:intergenic 55.0%
CCACAGGCCACTATACCTGA+AGG + chr7_1:40686950-40686969 None:intergenic 55.0%
CCTTCAGGTATAGTGGCCTG+TGG - chr7_1:40686947-40686966 Msa1019260:intron 55.0%
CAGGTATAGTGGCCTGTGGA+TGG - chr7_1:40686951-40686970 Msa1019260:intron 55.0%
CAGCAACAACTTCAGCCTCC+TGG + chr7_1:40681983-40682002 None:intergenic 55.0%
CGCCGAACTGCTCTTCAATG+TGG + chr7_1:40687503-40687522 None:intergenic 55.0%
ATTGAAGAGCAGTTCGGCGG+TGG - chr7_1:40687504-40687523 Msa1019260:intron 55.0%
ACCAGGGCGTGATGAAATGC+AGG + chr7_1:40687541-40687560 None:intergenic 55.0%
TCATCACGCCCTGGTCAATG+TGG - chr7_1:40687546-40687565 Msa1019260:intron 55.0%
GTCAATGTGGCAGGGCTGAT+GGG - chr7_1:40682132-40682151 Msa1019260:intron 55.0%
GCAGAGAGACGGAGAGGAAG+AGG - chr7_1:40679829-40679848 Msa1019260:three_prime_UTR 60.0%
GAGAGCAAGCTCCGCCAAGA+TGG - chr7_1:40679862-40679881 Msa1019260:three_prime_UTR 60.0%
AGTGGCACGCCTCTTGTGCA+TGG + chr7_1:40680015-40680034 None:intergenic 60.0%
! ATGCACAAGAGGCGTGCCAC+TGG - chr7_1:40680014-40680033 Msa1019260:three_prime_UTR 60.0%
GCCTGCATTTCATCTCGCCC+TGG - chr7_1:40682110-40682129 Msa1019260:intron 60.0%
TCGCCCTGGTCAATGTGGCA+GGG - chr7_1:40682124-40682143 Msa1019260:intron 60.0%
CAGCCCTGCCACATTGACCA+GGG + chr7_1:40682130-40682149 None:intergenic 60.0%
TCAGCCCTGCCACATTGACC+AGG + chr7_1:40682131-40682150 None:intergenic 60.0%
GGTCAATGTGGCAGGGCTGA+TGG - chr7_1:40682131-40682150 Msa1019260:intron 60.0%
AGTAGCTCCAGTTCAGCGGC+TGG - chr7_1:40683333-40683352 Msa1019260:intron 60.0%
! TCTGGTTCCAGCCGCTGAAC+TGG + chr7_1:40683343-40683362 None:intergenic 60.0%
TTGGGGGCTGCAATTGGCAG+TGG - chr7_1:40683534-40683553 Msa1019260:intron 60.0%
GAAGAAGCGGAGAGAGGGAG+AGG - chr7_1:40684740-40684759 Msa1019260:intron 60.0%
CGGAGAGAGGGAGAGGAAGA+GGG - chr7_1:40684747-40684766 Msa1019260:intron 60.0%
AGAGGGAGAGGAAGAGGGTG+AGG - chr7_1:40684752-40684771 Msa1019260:intron 60.0%
GAGGGAGAGGAAGAGGGTGA+GGG - chr7_1:40684753-40684772 Msa1019260:intron 60.0%
! ATGCACAAGAGGCGTGCCAC+TGG - chr7_1:40680014-40680033 Msa1019260:three_prime_UTR 60.0%
TGTTTAGGGGCAGTCCGGCT+TGG + chr7_1:40685985-40686004 None:intergenic 60.0%
GCCTGCATTTCATCACGCCC+TGG - chr7_1:40687537-40687556 Msa1019260:intron 60.0%
ACGCCCTGGTCAATGTGGCA+GGG - chr7_1:40687551-40687570 Msa1019260:intron 60.0%
CAGCCCTGCCACATTGACCA+GGG + chr7_1:40682130-40682149 None:intergenic 60.0%
TCAGCCCTGCCACATTGACC+AGG + chr7_1:40682131-40682150 None:intergenic 60.0%
GGTCAATGTGGCAGGGCTGA+TGG - chr7_1:40682131-40682150 Msa1019260:intron 60.0%
! CACAAGAGGCGTGCCACTGG+TGG - chr7_1:40680017-40680036 Msa1019260:three_prime_UTR 65.0%
CTCGCCCTGGTCAATGTGGC+AGG - chr7_1:40682123-40682142 Msa1019260:intron 65.0%
GCGGAGAGAGGGAGAGGAAG+AGG - chr7_1:40684746-40684765 Msa1019260:intron 65.0%
! CACAAGAGGCGTGCCACTGG+TGG - chr7_1:40680017-40680036 Msa1019260:three_prime_UTR 65.0%
CACGCCCTGGTCAATGTGGC+AGG - chr7_1:40687550-40687569 Msa1019260:intron 65.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 40679809 40688030 40679809 ID=Msa1019260;Name=Msa1019260
chr7_1 mRNA 40679809 40688030 40679809 ID=Msa1019260-mRNA-1;Parent=Msa1019260;Name=Msa1019260-mRNA-1;_AED=0.16;_eAED=0.16;_QI=72|0.66|0.53|1|0.75|0.84|13|257|428
chr7_1 exon 40679809 40679980 40679809 ID=Msa1019260-mRNA-1:exon:7904;Parent=Msa1019260-mRNA-1
chr7_1 exon 40680014 40680174 40680014 ID=Msa1019260-mRNA-1:exon:7903;Parent=Msa1019260-mRNA-1
chr7_1 exon 40680259 40680428 40680259 ID=Msa1019260-mRNA-1:exon:7902;Parent=Msa1019260-mRNA-1
chr7_1 exon 40680948 40681058 40680948 ID=Msa1019260-mRNA-1:exon:7901;Parent=Msa1019260-mRNA-1
chr7_1 exon 40681065 40681278 40681065 ID=Msa1019260-mRNA-1:exon:7900;Parent=Msa1019260-mRNA-1
chr7_1 exon 40682421 40682493 40682421 ID=Msa1019260-mRNA-1:exon:7899;Parent=Msa1019260-mRNA-1
chr7_1 exon 40685464 40685469 40685464 ID=Msa1019260-mRNA-1:exon:7898;Parent=Msa1019260-mRNA-1
chr7_1 exon 40685527 40685591 40685527 ID=Msa1019260-mRNA-1:exon:7897;Parent=Msa1019260-mRNA-1
chr7_1 exon 40685686 40685855 40685686 ID=Msa1019260-mRNA-1:exon:7896;Parent=Msa1019260-mRNA-1
chr7_1 exon 40686493 40686603 40686493 ID=Msa1019260-mRNA-1:exon:7895;Parent=Msa1019260-mRNA-1
chr7_1 exon 40686610 40686823 40686610 ID=Msa1019260-mRNA-1:exon:7894;Parent=Msa1019260-mRNA-1
chr7_1 exon 40687770 40687842 40687770 ID=Msa1019260-mRNA-1:exon:7893;Parent=Msa1019260-mRNA-1
chr7_1 exon 40687955 40688030 40687955 ID=Msa1019260-mRNA-1:exon:7892;Parent=Msa1019260-mRNA-1
chr7_1 five_prime_UTR 40687959 40688030 40687959 ID=Msa1019260-mRNA-1:five_prime_utr;Parent=Msa1019260-mRNA-1
chr7_1 CDS 40687955 40687958 40687955 ID=Msa1019260-mRNA-1:cds;Parent=Msa1019260-mRNA-1
chr7_1 CDS 40687770 40687842 40687770 ID=Msa1019260-mRNA-1:cds;Parent=Msa1019260-mRNA-1
chr7_1 CDS 40686610 40686823 40686610 ID=Msa1019260-mRNA-1:cds;Parent=Msa1019260-mRNA-1
chr7_1 CDS 40686493 40686603 40686493 ID=Msa1019260-mRNA-1:cds;Parent=Msa1019260-mRNA-1
chr7_1 CDS 40685686 40685855 40685686 ID=Msa1019260-mRNA-1:cds;Parent=Msa1019260-mRNA-1
chr7_1 CDS 40685527 40685591 40685527 ID=Msa1019260-mRNA-1:cds;Parent=Msa1019260-mRNA-1
chr7_1 CDS 40685464 40685469 40685464 ID=Msa1019260-mRNA-1:cds;Parent=Msa1019260-mRNA-1
chr7_1 CDS 40682421 40682493 40682421 ID=Msa1019260-mRNA-1:cds;Parent=Msa1019260-mRNA-1
chr7_1 CDS 40681065 40681278 40681065 ID=Msa1019260-mRNA-1:cds;Parent=Msa1019260-mRNA-1
chr7_1 CDS 40680948 40681058 40680948 ID=Msa1019260-mRNA-1:cds;Parent=Msa1019260-mRNA-1
chr7_1 CDS 40680259 40680428 40680259 ID=Msa1019260-mRNA-1:cds;Parent=Msa1019260-mRNA-1
chr7_1 CDS 40680099 40680174 40680099 ID=Msa1019260-mRNA-1:cds;Parent=Msa1019260-mRNA-1
chr7_1 three_prime_UTR 40680014 40680098 40680014 ID=Msa1019260-mRNA-1:three_prime_utr;Parent=Msa1019260-mRNA-1
chr7_1 three_prime_UTR 40679809 40679980 40679809 ID=Msa1019260-mRNA-1:three_prime_utr;Parent=Msa1019260-mRNA-1
Gene Sequence

>Msa1019260

ATGGGTATTTCTAGGGATTCCATGCACAAGAGGCGTGCCACTGGTGGCAAGAAGAAGAGCTGGAGAAAGAAGCGAAAGTACGAGCTTGGTCGCCAGCCAGCAAACACTAAGCTGTCTAGCAACAAGACAGTCAGGAGGATCCGTGTTAGAGGTGGCAATGTGAAATGGAGAGCTCTTAGATTGGACACTGGAAATTTCTCTTGGGGTAGTGAGGCAGTGACTCGCAAGACTCGTCTTCTCGATGTGGTTTACAATGCCTCAAACAATGAGCTTGTTCGTACTCAGACTCTGAGTGCCATTGTCCAAGTTGATGCTGCTCCATTCAAGCAGTGGTATCTTCAGCACTACGGTGTTGAAGTTGGTAGGAAAAAGAAAACAGCAGCCAAGAAGGATTCTGCAGAGGAGGCTGAAGTTGTTGCTGAAGAAGTTAAGAAAAGTAACCACGTGCAGAGAAAACTTGAGCAGCGTCAGAAAGATAGGCAACTTGATTCCCACATTGAAGAGCAGTTCGGTGGTGGTCGTTTGCTTGCCTGCATTTCATCTCGCCCTGGTCAATGTGGCAGGGCTGATGGGTACATTCTTGAAGGTAAGGAGCTGGAGTTTTACATGAAGAAATTACAGAAAAAGAAGGGAAAGAATATTGGTATTTCAAGAGATTCTATGCACAAGAGGCGTGCCACTGGTGGCAAGAAGAAGAGCTGGAGAAAGAAGCGAAAGTACGAGCTTGGTCGCCAGCCAGCCAACACTAAGCTGTCTAGCAACAAGACAGTCAGGAGAATCCGTGTTAGAGGTGGCAATGTGAAATGGAGAGCTCTTAGATTGGACACTGGAAATTTCTCGTGGGGTAGTGAGGCAGTGACTCGCAAGACTCGTCTTCTCGATGTGGTTTACAATGCCTCAAACAATGAGCTTGTTCGTACTCAGACTCTGAGTGCCATTGTCCAAGTTGATGCTGCACCATTCAAGCAGTGGTATCTTCAGCACTATGGTGTTGAAGTTGGTAGGAAAAAGAAAACAGCAGCCAAGAAGGATTCTGCAGAGGAGGCTGAAGTTGTTGCTGAAGAAGTTAAGAAGAGTAACCACGTGCAGAGAAAACTTGAGCAGCGTCAGAAAGATAGGCAACTTGATTCCCACATTGAAGAGCAGTTCGGCGGTGGACGTTTGCTTGCCTGCATTTCATCACGCCCTGGTCAATGTGGCAGGGCTGATGGGTACATTCTTGAAGGTAAGGAGTTGGAGTTTTACATGAAGAAATTACAGAAAAAGAAGGGAAAGAGTGCTGCTTAA

Protein sequence

>Msa1019260

MGISRDSMHKRRATGGKKKSWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNFSWGSEAVTRKTRLLDVVYNASNNELVRTQTLSAIVQVDAAPFKQWYLQHYGVEVGRKKKTAAKKDSAEEAEVVAEEVKKSNHVQRKLEQRQKDRQLDSHIEEQFGGGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQKKKGKNIGISRDSMHKRRATGGKKKSWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNFSWGSEAVTRKTRLLDVVYNASNNELVRTQTLSAIVQVDAAPFKQWYLQHYGVEVGRKKKTAAKKDSAEEAEVVAEEVKKSNHVQRKLEQRQKDRQLDSHIEEQFGGGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQKKKGKSAA*