AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1225030

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1225030 MtrunA17_Chr4g0063141 96.861 892 23 2 1 892 1 887 0.0 1790
Msa1225030 MtrunA17_Chr1g0148981 47.300 1000 359 14 19 872 24 1001 0.0 879
Msa1225030 MtrunA17_Chr2g0277651 46.834 679 346 6 28 702 47 714 0.0 632
Msa1225030 MtrunA17_Chr8g0356081 57.411 479 195 4 26 502 20 491 0.0 562
Msa1225030 MtrunA17_Chr3g0138131 63.793 406 139 5 18 421 34 433 2.14e-178 523
Msa1225030 MtrunA17_Chr2g0286031 43.208 773 303 24 128 876 17 677 2.92e-174 521
Msa1225030 MtrunA17_Chr3g0138671 48.893 497 241 6 23 513 20 509 1.50e-158 478
Msa1225030 MtrunA17_Chr3g0138141 51.562 448 201 5 433 874 11 448 8.86e-149 446
Msa1225030 MtrunA17_Chr5g0434371 34.103 736 450 14 10 732 45 758 3.16e-129 409
Msa1225030 MtrunA17_Chr4g0009161 88.430 121 10 2 424 541 6 125 4.81e-61 206
Msa1225030 MtrunA17_Chr4g0063071 38.095 252 152 1 271 518 5 256 4.06e-46 166
Msa1225030 MtrunA17_Chr2g0286041 53.913 115 53 0 11 125 16 130 5.92e-37 135
Msa1225030 MtrunA17_Chr4g0062571 35.776 232 130 8 77 306 2 216 4.04e-28 113
Msa1225030 MtrunA17_Chr4g0062561 35.319 235 132 8 77 306 2 221 5.13e-27 118
Msa1225030 MtrunA17_Chr4g0063081 31.606 193 128 3 58 249 3 192 1.11e-24 102
Msa1225030 MtrunA17_Chr4g0073941 21.042 480 299 8 46 446 99 577 7.07e-23 104
Msa1225030 MtrunA17_Chr8g0347121 21.609 435 258 9 87 446 113 539 2.13e-19 93.6
Msa1225030 MtrunA17_Chr4g0001481 20.623 514 301 16 24 446 85 582 1.78e-17 87.4
Msa1225030 MtrunA17_Chr1g0181121 20.782 486 291 15 45 446 43 518 4.74e-16 82.8
Msa1225030 MtrunA17_Chr2g0326871 19.880 498 323 10 24 446 55 551 1.79e-15 80.9
Msa1225030 MtrunA17_Chr6g0461061 27.053 207 126 3 530 712 250 455 2.95e-15 79.7
Msa1225030 MtrunA17_Chr6g0461061 35.833 120 76 1 526 644 367 486 7.69e-11 65.9
Msa1225030 MtrunA17_Chr5g0418551 30.625 160 79 1 530 689 97 224 1.85e-14 74.3
Msa1225030 MtrunA17_Chr5g0418551 29.655 145 96 3 585 724 50 193 4.16e-11 64.3
Msa1225030 MtrunA17_Chr3g0126541 25.243 206 149 4 244 446 352 555 2.96e-13 73.9
Msa1225030 MtrunA17_Chr1g0170401 33.962 106 69 1 317 421 22 127 4.80e-13 67.0
Msa1225030 MtrunA17_Chr3g0125651 25.688 218 152 5 232 446 307 517 9.62e-13 72.0
Msa1225030 MtrunA17_Chr1g0158861 19.286 420 263 11 96 446 145 557 1.14e-12 72.0
Msa1225030 MtrunA17_Chr4g0028861 22.791 215 163 2 234 446 385 598 1.27e-12 71.6
Msa1225030 MtrunA17_Chr3g0129271 85.000 40 3 1 505 541 1 40 2.65e-12 68.2
Msa1225030 MtrunA17_Chr5g0405531 55.769 52 20 1 242 290 15 66 3.25e-12 66.2
Msa1225030 MtrunA17_Chr5g0443471 32.500 160 93 2 459 618 1 145 7.87e-12 68.6
Msa1225030 MtrunA17_Chr2g0327711 30.102 196 125 8 529 715 107 299 1.58e-11 67.8
Msa1225030 MtrunA17_Chr1g0180301 29.560 159 85 3 550 708 65 196 2.72e-11 63.9
Msa1225030 MtrunA17_Chr5g0405451 33.824 136 87 2 560 693 273 407 2.77e-11 66.6
Msa1225030 MtrunA17_Chr1g0196261 27.500 200 133 3 530 728 260 448 3.22e-11 66.6
Msa1225030 MtrunA17_Chr2g0284901 39.785 93 56 0 521 613 36 128 3.99e-11 66.2
Msa1225030 MtrunA17_Chr7g0218341 28.804 184 128 3 240 422 387 568 5.70e-11 66.6
Msa1225030 MtrunA17_Chr4g0049351 30.000 170 115 3 544 710 45 213 8.14e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1225030 AT2G26650.1 70.218 873 228 13 7 873 7 853 0.0 1252
Msa1225030 AT2G26650.2 69.509 774 207 11 103 873 1 748 0.0 1095
Msa1225030 AT2G25600.1 62.471 866 302 9 14 873 36 884 0.0 1089
Msa1225030 AT4G32500.1 60.920 870 307 11 14 874 32 877 0.0 1069
Msa1225030 AT4G22200.1 46.618 680 345 9 9 680 28 697 0.0 610
Msa1225030 AT5G46240.1 60.377 477 180 4 24 498 29 498 0.0 597
Msa1225030 AT4G18290.2 59.596 495 191 4 24 516 40 527 0.0 588
Msa1225030 AT4G18290.1 59.596 495 191 4 24 516 29 516 0.0 588
Msa1225030 AT4G22200.2 48.750 560 270 8 9 560 28 578 3.03e-174 518
Msa1225030 AT4G32650.2 47.444 489 250 5 23 508 54 538 1.21e-145 444
Msa1225030 AT4G32650.3 47.444 489 250 5 23 508 54 538 1.34e-145 446
Msa1225030 AT4G32650.1 47.444 489 250 5 23 508 54 538 1.88e-145 446
Msa1225030 AT5G37500.1 36.496 685 403 14 46 716 57 723 1.09e-129 409
Msa1225030 AT3G02850.2 35.354 693 414 14 43 721 71 743 4.64e-128 403
Msa1225030 AT3G02850.1 35.354 693 414 14 43 721 71 743 1.60e-127 404
Msa1225030 AT5G37500.2 35.361 707 403 15 46 716 57 745 1.54e-124 397
Msa1225030 AT5G37500.3 35.235 701 400 15 52 716 9 691 2.55e-123 392
Msa1225030 AT5G37500.4 35.651 676 381 15 46 685 57 714 4.26e-122 386
Msa1225030 AT3G02850.3 35.161 529 318 10 43 560 71 585 3.10e-98 320
Msa1225030 AT1G15990.1 21.193 486 296 10 46 446 90 573 2.37e-21 100
Msa1225030 AT4G30560.1 20.661 484 299 10 46 446 103 584 1.10e-20 98.2
Msa1225030 AT4G30560.4 20.661 484 299 10 46 446 103 584 1.10e-20 98.2
Msa1225030 AT4G30560.5 20.661 484 299 10 46 446 77 558 1.46e-20 97.8
Msa1225030 AT4G30560.2 20.661 484 299 10 46 446 77 558 1.46e-20 97.8
Msa1225030 AT4G30560.3 20.661 484 299 10 46 446 77 558 1.46e-20 97.8
Msa1225030 AT1G01340.2 21.807 509 310 15 43 467 65 569 3.68e-17 87.0
Msa1225030 AT1G01340.1 21.807 509 310 15 43 467 60 564 4.53e-17 86.7
Msa1225030 AT4G01010.1 21.444 457 276 11 87 467 121 570 8.08e-17 85.9
Msa1225030 AT4G01010.2 21.444 457 276 11 87 467 121 570 8.08e-17 85.9
Msa1225030 AT2G23980.9 25.243 206 151 2 243 446 381 585 3.26e-16 84.0
Msa1225030 AT2G23980.10 25.243 206 151 2 243 446 381 585 3.26e-16 84.0
Msa1225030 AT2G23980.1 25.243 206 151 2 243 446 381 585 3.26e-16 84.0
Msa1225030 AT2G23980.4 25.243 206 151 2 243 446 381 585 3.26e-16 84.0
Msa1225030 AT2G23980.5 25.243 206 151 2 243 446 381 585 3.26e-16 84.0
Msa1225030 AT2G23980.6 25.243 206 151 2 243 446 354 558 3.58e-16 83.6
Msa1225030 AT2G23980.3 25.243 206 151 2 243 446 404 608 3.83e-16 83.6
Msa1225030 AT2G23980.2 25.243 206 151 2 243 446 404 608 3.83e-16 83.6
Msa1225030 AT2G23980.8 25.243 206 151 2 243 446 404 608 3.83e-16 83.6
Msa1225030 AT2G23980.7 25.243 206 151 2 243 446 404 608 3.83e-16 83.6
Msa1225030 AT5G57940.1 25.714 210 153 2 239 446 361 569 7.54e-16 82.8
Msa1225030 AT5G57940.2 25.714 210 153 2 239 446 361 569 7.54e-16 82.8
Msa1225030 AT5G57940.3 25.714 210 153 2 239 446 354 562 7.67e-16 82.8
Msa1225030 AT2G46430.1 20.477 503 288 13 46 454 72 556 1.98e-15 81.3
Msa1225030 AT2G46430.2 20.477 503 288 13 46 454 72 556 1.98e-15 81.3
Msa1225030 AT1G19780.2 23.923 209 156 2 240 446 161 368 3.65e-15 80.1
Msa1225030 AT1G19780.1 23.923 209 156 2 240 446 372 579 5.97e-15 79.7
Msa1225030 AT2G28260.1 19.561 501 319 13 24 446 48 542 1.19e-14 78.6
Msa1225030 AT2G28260.2 19.561 501 319 13 24 446 8 502 3.14e-14 77.4
Msa1225030 AT5G53130.1 18.519 432 289 10 77 446 127 557 4.24e-14 77.0
Msa1225030 AT2G03430.1 32.500 160 76 1 530 689 90 217 7.98e-13 69.7
Msa1225030 AT3G48010.1 19.722 431 268 11 91 446 101 528 1.67e-12 72.0
Msa1225030 AT2G31800.1 43.158 95 54 0 521 615 73 167 1.11e-11 68.6
Msa1225030 AT5G02620.4 29.592 196 126 7 529 715 97 289 3.09e-11 67.4
Msa1225030 AT5G02620.1 29.592 196 126 7 529 715 97 289 3.09e-11 67.4
Msa1225030 AT5G02620.3 29.592 196 126 7 529 715 97 289 3.09e-11 67.4
Msa1225030 AT5G15410.1 27.650 217 151 5 240 453 395 608 4.13e-11 67.4
Msa1225030 AT5G14870.1 22.330 206 157 2 243 446 316 520 4.27e-11 67.4
Msa1225030 AT5G15410.2 27.650 217 151 5 240 453 394 607 4.49e-11 67.4
Msa1225030 AT2G43850.1 41.053 95 56 0 521 615 76 170 7.29e-11 66.2
Msa1225030 AT2G43850.2 41.053 95 56 0 521 615 76 170 7.48e-11 66.2
Msa1225030 AT2G43850.3 41.053 95 56 0 521 615 76 170 7.53e-11 65.9

Find 198 sgRNAs with CRISPR-Local

Find 420 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAATTGGATCTAAGAAATT+TGG 0.159426 8_1:-90257413 Msa1225030:CDS
TCTTACGCCTTGGTCGATTT+TGG 0.184648 8_1:+90257645 None:intergenic
TTTCAAGAGTTACTTGAAAT+TGG 0.187237 8_1:-90257428 Msa1225030:CDS
AAGAAGGTTATTCATGATTA+TGG 0.214802 8_1:+90259859 None:intergenic
TATTTCCAAGCAATCTGTTT+TGG 0.232434 8_1:+90261662 None:intergenic
ACCAAAACTCCCTCCATAAT+TGG 0.233288 8_1:+90259735 None:intergenic
AGTAACTCTTGAAAACTTTC+AGG 0.236660 8_1:+90257437 None:intergenic
TGGGTATCTCCATTTGAATT+TGG 0.237646 8_1:-90261815 Msa1225030:CDS
TTGATAATTCAAGTTCTTCT+TGG 0.249005 8_1:+90263765 None:intergenic
TCCAATTATGGAGGGAGTTT+TGG 0.253826 8_1:-90259736 Msa1225030:CDS
GTGGTTCCAACGCTGTTATT+TGG 0.284651 8_1:+90257980 None:intergenic
CTTACTATTATCTTCTCCTT+TGG 0.288283 8_1:+90257802 None:intergenic
ATTATCGTAAGTACACATTA+TGG 0.303901 8_1:+90257248 None:intergenic
ATGCTTGATCTGATGGCTTT+AGG 0.306463 8_1:+90260552 None:intergenic
AACTTTCATAATTCACTCTT+CGG 0.310197 8_1:-90257617 Msa1225030:CDS
TTTAACTCTCCGGTTACTTC+TGG 0.312354 8_1:+90263691 None:intergenic
TGATTTCTGTATGTCCTTGT+TGG 0.313279 8_1:+90257840 None:intergenic
TGTAAGATAACATCTTCTTT+AGG 0.317107 8_1:+90260316 None:intergenic
CCAAATGAATCTGACAATAA+TGG 0.317153 8_1:-90259597 Msa1225030:CDS
AATCATGAATAACCTTCTTC+AGG 0.328424 8_1:-90259855 Msa1225030:intron
TGAATCAGTAACAAAACTTT+TGG 0.330718 8_1:-90258122 Msa1225030:CDS
CTCCTTATGATCGTCGTTAC+CGG 0.333638 8_1:-90263649 Msa1225030:intron
CCATTATTGTCAGATTCATT+TGG 0.334448 8_1:+90259597 None:intergenic
ACAATTGTTAAAACGAGGTT+TGG 0.336188 8_1:-90259622 Msa1225030:CDS
TCGCGGTAGGATGGACTTAC+CGG 0.346383 8_1:-90259691 Msa1225030:CDS
ACAAAGGTTGTTTGCAAAGA+TGG 0.348494 8_1:-90257380 Msa1225030:CDS
TGTTAGCACCATGTTCTAAT+AGG 0.348874 8_1:+90257909 None:intergenic
AACAATTAGTTGTCCTGAAA+AGG 0.352253 8_1:-90257489 Msa1225030:CDS
GACAATTTCAACACTGTCTT+CGG 0.357495 8_1:+90257937 None:intergenic
TCGCCAATCCATGTCTTTGC+TGG 0.359083 8_1:+90261026 None:intergenic
AAATGATTTGCTCTTTCAAT+TGG 0.360734 8_1:-90260472 Msa1225030:intron
AACCTTCTTTGTGGCTTACC+TGG 0.361868 8_1:-90261714 Msa1225030:CDS
TCTTGAGGTGTAGGCATTGT+TGG 0.364189 8_1:+90257701 None:intergenic
AGAGCTGAACGATCCAATTA+TGG 0.367123 8_1:-90259748 Msa1225030:CDS
CTTGTAGACGAGGAGGTAAT+TGG 0.367960 8_1:+90260655 None:intergenic
ATTGACAAACAAGATAAATA+TGG 0.369621 8_1:-90257887 Msa1225030:CDS
CCTGAAAAGGGTGAGGTTGC+TGG 0.373166 8_1:-90257476 Msa1225030:CDS
TATTCAACATGCTTAGGCTT+TGG 0.375101 8_1:-90261547 Msa1225030:CDS
TTTCTATTCTCTGATGGATA+AGG 0.375315 8_1:-90260517 Msa1225030:CDS
CTATCCTGCCTCTCAGGAAT+AGG 0.383653 8_1:+90257758 None:intergenic
ATTAGAGGGTGTTGTACAAT+TGG 0.384084 8_1:+90257280 None:intergenic
CCTCAAGATGGACCATTTCA+TGG 0.385679 8_1:-90257686 Msa1225030:CDS
TATAGTTCTAACCTTCTTTG+TGG 0.388479 8_1:-90261723 Msa1225030:CDS
GTTACAGATAATATTGTCAA+TGG 0.388775 8_1:-90261761 Msa1225030:CDS
ACTTTCATAATTCACTCTTC+GGG 0.388959 8_1:-90257616 Msa1225030:CDS
CTCGGAGGGCTTGCAGCAAC+AGG 0.388996 8_1:-90260592 Msa1225030:CDS
TGTTGGTCAGCTAAATCTCT+TGG 0.395126 8_1:+90257857 None:intergenic
CTTGGAAATATGCAAGAACT+TGG 0.401223 8_1:-90261649 Msa1225030:CDS
GCTGCAAAGCATAGACTTAC+CGG 0.406634 8_1:+90259672 None:intergenic
ACTTTGACAACAGTTGGTTA+TGG 0.407995 8_1:-90260933 Msa1225030:CDS
CTATTTGCTGTGCACTGTGC+TGG 0.409744 8_1:-90261086 Msa1225030:CDS
AACCGTGTACTAACAACTAC+TGG 0.412125 8_1:-90263857 Msa1225030:five_prime_UTR
TCTTGGCCACACATAGTCAT+TGG 0.414092 8_1:+90263782 None:intergenic
TCTCAAAGGCGGGGTTGAAC+AGG 0.416047 8_1:-90260130 Msa1225030:intron
GGAGAACTTTGTGGCGAGAT+TGG 0.419836 8_1:-90259998 Msa1225030:CDS
TTAAGGAATCCAAATTCAAA+TGG 0.420962 8_1:+90261806 None:intergenic
AATGGTGCTACCTTGCAAAT+TGG 0.426790 8_1:-90258094 Msa1225030:CDS
TCAAATATGTCAATTATCAT+TGG 0.432061 8_1:+90257209 None:intergenic
ATTGGTTGTGTATACTGCTT+GGG 0.432083 8_1:-90261834 Msa1225030:CDS
GGTAATTGATTTCAGATTGT+CGG 0.435654 8_1:-90260034 Msa1225030:intron
ACTTTACTATCCTGCCTCTC+AGG 0.438582 8_1:+90257752 None:intergenic
TTATGGATTGACACCATTAG+AGG 0.439624 8_1:+90257265 None:intergenic
AAAGCCTAAGCATGTTGAAT+AGG 0.440645 8_1:+90261549 None:intergenic
CAACTAATTGTTACTCTGGT+TGG 0.446246 8_1:+90257500 None:intergenic
CAACAGTTGACTTAATCGTT+TGG 0.446381 8_1:+90259937 None:intergenic
AAAACTTGATGCAGCTTGTA+TGG 0.447111 8_1:+90260689 None:intergenic
TACCGGTAACGACGATCATA+AGG 0.451804 8_1:+90263647 None:intergenic
AATTGTACAACACCCTCTAA+TGG 0.453079 8_1:-90257278 Msa1225030:CDS
CATTGGTTGTGTATACTGCT+TGG 0.454787 8_1:-90261835 Msa1225030:CDS
GAACCATCATTTCCATGAAA+TGG 0.456733 8_1:+90257674 None:intergenic
TGAATATTTACCTCTAACGT+TGG 0.456892 8_1:+90259409 None:intergenic
CTATGCTTTGCAGCAGAAAG+AGG 0.457199 8_1:-90259663 Msa1225030:CDS
GGATAAGGTTTACTTATTCA+AGG 0.459264 8_1:-90260502 Msa1225030:CDS
ATTGTCGGTGAGGCGAAAAC+AGG 0.459413 8_1:-90260019 Msa1225030:CDS
GGGGCAAATCCCAACGTTAG+AGG 0.463630 8_1:-90259419 Msa1225030:intron
ACTTGGTAGTTCTCAAAGGC+GGG 0.467309 8_1:-90260140 Msa1225030:CDS
GGACCATTTCATGGAAATGA+TGG 0.467455 8_1:-90257677 Msa1225030:CDS
AATATTATCTGTAACAGAAA+GGG 0.469418 8_1:+90261769 None:intergenic
GCACTGTGGGAGGCTATACT+TGG 0.472097 8_1:-90258151 Msa1225030:CDS
ATCATCTCCCTTTCATTCAC+CGG 0.475138 8_1:+90260900 None:intergenic
AATTTACTTGCAGATTCTGA+TGG 0.478811 8_1:-90258181 Msa1225030:intron
ACCGGAATATTACCTTCTCT+TGG 0.480108 8_1:-90263716 Msa1225030:CDS
GGAAACTTTCCTTGTTACAT+TGG 0.482337 8_1:-90261852 Msa1225030:CDS
GAATATTTACCTCTAACGTT+GGG 0.484672 8_1:+90259410 None:intergenic
CAATAATGGAAGGACAGCTT+TGG 0.484704 8_1:-90259583 Msa1225030:intron
ATGGCCTATTCAACATGCTT+AGG 0.485900 8_1:-90261553 Msa1225030:CDS
ATAACCCAAAACAGATTGCT+TGG 0.486830 8_1:-90261667 Msa1225030:CDS
GGATTAACAGCATATCTGAT+TGG 0.489401 8_1:-90260846 Msa1225030:CDS
TGTGCCTATTCCTGAGAGGC+AGG 0.490748 8_1:-90257762 Msa1225030:CDS
GAGGTCTGAGTTTAACTCTC+CGG 0.494710 8_1:+90263681 None:intergenic
TGGGTTATCTACGAACAAAT+AGG 0.494743 8_1:+90261682 None:intergenic
GATATGTGACAACTATATAC+TGG 0.495633 8_1:-90260965 Msa1225030:CDS
CTCTTGGTGCCAGAAGTAAC+CGG 0.497763 8_1:-90263700 Msa1225030:CDS
ATCACTACTTTGACAACAGT+TGG 0.498381 8_1:-90260939 Msa1225030:CDS
GATAAGGTTTACTTATTCAA+GGG 0.504358 8_1:-90260501 Msa1225030:CDS
CAATATTATCTGTAACAGAA+AGG 0.504476 8_1:+90261768 None:intergenic
TTTACTTCTGTTAGATTATG+GGG 0.504997 8_1:-90259438 Msa1225030:CDS
ATTTGCATCCGGTGAATGAA+AGG 0.506377 8_1:-90260908 Msa1225030:CDS
TTCATGGAAATGATGGTTCG+TGG 0.507610 8_1:-90257670 Msa1225030:CDS
GTTCTAACTGTAAAATGTTG+TGG 0.508227 8_1:+90259959 None:intergenic
ATGTGAAATGCTTGATCTGA+TGG 0.508712 8_1:+90260545 None:intergenic
ACAATTAGTTGTCCTGAAAA+GGG 0.509385 8_1:-90257488 Msa1225030:CDS
CATGTTAGCTCGCGGTAGGA+TGG 0.511666 8_1:-90259700 Msa1225030:CDS
AGGACAACTAATTGTTACTC+TGG 0.511991 8_1:+90257496 None:intergenic
CCATAGGTTTGCATAGGAGC+AGG 0.516008 8_1:+90261572 None:intergenic
GATCCAGCAAAGACATGGAT+TGG 0.516138 8_1:-90261029 Msa1225030:CDS
ACCTTGCAAATTGGTGATGT+TGG 0.517772 8_1:-90258085 Msa1225030:CDS
AGAGGCAGGATAGTAAAGTA+AGG 0.520908 8_1:-90257748 Msa1225030:CDS
ATGAATAACAATGCAAGGAA+TGG 0.521783 8_1:-90257542 Msa1225030:CDS
CCATGAAATGGTCCATCTTG+AGG 0.523554 8_1:+90257686 None:intergenic
AAGATAACATCTTCTTTAGG+TGG 0.523564 8_1:+90260319 None:intergenic
GTCCAGGTAAGCCACAAAGA+AGG 0.528851 8_1:+90261712 None:intergenic
GAACTTGAATTATCAAGAGA+TGG 0.529174 8_1:-90263758 Msa1225030:CDS
TCTTTAGGTGGAAAATACTC+CGG 0.530265 8_1:+90260331 None:intergenic
AGTCACTATAGTCTCACAAC+CGG 0.534124 8_1:-90263734 Msa1225030:CDS
TTGCAAGACATTATGCGATA+CGG 0.534785 8_1:-90258019 Msa1225030:CDS
AAGTTATTATTCTTACGCCT+TGG 0.534957 8_1:+90257635 None:intergenic
ATTTGGTATAGTTGCTACAA+AGG 0.535494 8_1:-90257396 Msa1225030:CDS
TTCTAGTTCGACTTGTGCCA+TGG 0.537239 8_1:+90260802 None:intergenic
ACCAAGAGAAGGTAATATTC+CGG 0.537473 8_1:+90263715 None:intergenic
CTTTGAGCCTAGGCTTGAGA+AGG 0.537587 8_1:-90261257 Msa1225030:CDS
CAGCATATAGCAGCATGTAA+AGG 0.539958 8_1:-90259476 Msa1225030:CDS
TGGTTATGGAGATTTGCATC+CGG 0.540519 8_1:-90260919 Msa1225030:CDS
CTGAAAAGGGTGAGGTTGCT+GGG 0.541290 8_1:-90257475 Msa1225030:CDS
CCTGCTCCTATGCAAACCTA+TGG 0.542911 8_1:-90261572 Msa1225030:CDS
TTCAAATGAATAACAATGCA+AGG 0.543233 8_1:-90257547 Msa1225030:CDS
GCGAAAACAGGAGAACTTTG+TGG 0.545507 8_1:-90260007 Msa1225030:CDS
AGCTGAAATTGATGATATTG+AGG 0.548119 8_1:-90257357 Msa1225030:CDS
AGCTTGAACAATATTCAAGA+AGG 0.549670 8_1:+90259898 None:intergenic
ACAAACAAGATAAATATGGT+TGG 0.551034 8_1:-90257883 Msa1225030:CDS
CATTCTAGTCACTGGTGCTG+TGG 0.554382 8_1:-90260269 Msa1225030:intron
GATAGTAAAGTAAGGTACCT+TGG 0.555336 8_1:-90257740 Msa1225030:CDS
TATCATTGGATATATGAAGC+AGG 0.556792 8_1:+90257223 None:intergenic
AATATTGTTCAAGCTAATGT+TGG 0.558746 8_1:-90259890 Msa1225030:CDS
TTTCTGTCCTTCTCAAGCCT+AGG 0.563193 8_1:+90261250 None:intergenic
AAGCATGTTGAATAGGCCAT+AGG 0.563411 8_1:+90261556 None:intergenic
ATATGTGCAACAAGCTCAGA+AGG 0.564694 8_1:+90261599 None:intergenic
AACTGTTGTCAAAGTAGTGA+TGG 0.565441 8_1:+90260941 None:intergenic
TTCCAGTAGTTGTTAGTACA+CGG 0.566069 8_1:+90263855 None:intergenic
CTGTGGGAGGCTATACTTGG+AGG 0.566130 8_1:-90258148 Msa1225030:CDS
AATGGTCCATCTTGAGGTGT+AGG 0.568937 8_1:+90257692 None:intergenic
TTACTTCTGGCACCAAGAGA+AGG 0.574678 8_1:+90263704 None:intergenic
CAATATTCAAGAAGGTGGTA+CGG 0.576345 8_1:+90259906 None:intergenic
AACAAGCTCAGAAGGAATGA+TGG 0.576388 8_1:+90261607 None:intergenic
ACGCTTCCAAATAACAGCGT+TGG 0.581242 8_1:-90257986 Msa1225030:CDS
TTTGCATCCGGTGAATGAAA+GGG 0.582391 8_1:-90260907 Msa1225030:CDS
AATAGGCCATAGGTTTGCAT+AGG 0.582725 8_1:+90261566 None:intergenic
GTTCAAGCTAATGTTGGTGA+CGG 0.585004 8_1:-90259884 Msa1225030:CDS
ATTTCCTTCAGCAGTCCTTG+TGG 0.585108 8_1:-90260992 Msa1225030:CDS
ATATTATACAAACCTGAAGA+AGG 0.585498 8_1:+90259843 None:intergenic
ACCAACATCACCAATTTGCA+AGG 0.590523 8_1:+90258084 None:intergenic
CAGGACTTGGTAGTTCTCAA+AGG 0.591073 8_1:-90260144 Msa1225030:CDS
AAAGGTATCTGAGATGAAGC+CGG 0.592222 8_1:-90260350 Msa1225030:intron
ATGACTAACTTAGTTGTCCA+TGG 0.595240 8_1:-90260819 Msa1225030:CDS
AAATAACAGCGTTGGAACCA+CGG 0.598946 8_1:-90257978 Msa1225030:CDS
ACAATGCCTACACCTCAAGA+TGG 0.600887 8_1:-90257698 Msa1225030:CDS
GATATTGAGGTTATTAGAGA+TGG 0.601302 8_1:-90257344 Msa1225030:CDS
ATATTATCTGTAACAGAAAG+GGG 0.602322 8_1:+90261770 None:intergenic
TATGGATTGACACCATTAGA+GGG 0.602501 8_1:+90257266 None:intergenic
TAGTTGTCCTGAAAAGGGTG+AGG 0.602708 8_1:-90257483 Msa1225030:CDS
CTTGGTAGTTCTCAAAGGCG+GGG 0.603468 8_1:-90260139 Msa1225030:CDS
TTGTCCACAAGGACTGCTGA+AGG 0.603513 8_1:+90260988 None:intergenic
GTCAAATTCCTATTAGAACA+TGG 0.604229 8_1:-90257917 Msa1225030:CDS
TTTGAAGTTTAGAACAGACT+CGG 0.605753 8_1:-90260610 Msa1225030:CDS
TTGATTTCAGATTGTCGGTG+AGG 0.610033 8_1:-90260029 Msa1225030:intron
ATGAATCTGACAATAATGGA+AGG 0.612082 8_1:-90259593 Msa1225030:CDS
TTGAACAATATTCAAGAAGG+TGG 0.612304 8_1:+90259901 None:intergenic
ATCATGATCCAGCAAAGACA+TGG 0.613607 8_1:-90261034 Msa1225030:CDS
ATAAGGTTTACTTATTCAAG+GGG 0.618805 8_1:-90260500 Msa1225030:CDS
GCTGAACGATCCAATTATGG+AGG 0.619540 8_1:-90259745 Msa1225030:CDS
TGATGGAAATGTAGCACTGT+GGG 0.620949 8_1:-90258164 Msa1225030:CDS
AGAACATGTTAGCTCGCGGT+AGG 0.621813 8_1:-90259704 Msa1225030:CDS
ATAATGTCAGCGGCAACCAA+AGG 0.622201 8_1:-90257593 Msa1225030:CDS
AACGATTAAGTCAACTGTTG+AGG 0.627952 8_1:-90259934 Msa1225030:CDS
GACTGCCACGTGTAACGCCG+TGG 0.630842 8_1:+90257961 None:intergenic
TGGAACCACGGCGTTACACG+TGG 0.632497 8_1:-90257966 Msa1225030:CDS
AGCATTTGATCTTGTAGACG+AGG 0.634274 8_1:+90260645 None:intergenic
AAGTTTAGAACAGACTCGGA+GGG 0.635693 8_1:-90260606 Msa1225030:CDS
TTTCTGTGCCTATTCCTGAG+AGG 0.644101 8_1:-90257766 Msa1225030:CDS
GTTCACTTGTAAATCTACCA+AGG 0.647208 8_1:+90257723 None:intergenic
CTGAACGATCCAATTATGGA+GGG 0.648177 8_1:-90259744 Msa1225030:CDS
GACTTGGTAGTTCTCAAAGG+CGG 0.651153 8_1:-90260141 Msa1225030:CDS
TGCTGGATCATGATAACGCG+CGG 0.652027 8_1:+90261043 None:intergenic
ATTTGATCTTGTAGACGAGG+AGG 0.661387 8_1:+90260648 None:intergenic
TCATAAGGAGATATAATGAG+AGG 0.668306 8_1:+90263662 None:intergenic
CAAGACATTATGCGATACGG+TGG 0.671228 8_1:-90258016 Msa1225030:CDS
CGTGGATCCAAAATCGACCA+AGG 0.677430 8_1:-90257652 Msa1225030:CDS
TTACAACAATTGTTAAAACG+AGG 0.677794 8_1:-90259627 Msa1225030:CDS
AGAGATTTAGCTGACCAACA+AGG 0.679515 8_1:-90257854 Msa1225030:CDS
ACTCTTCGGGATAATGTCAG+CGG 0.680608 8_1:-90257603 Msa1225030:CDS
TATACACAACCAATGTAACA+AGG 0.681551 8_1:+90261843 None:intergenic
GAAGTTTAGAACAGACTCGG+AGG 0.683148 8_1:-90260607 Msa1225030:CDS
TGTCACATATCTTGTCCACA+AGG 0.685180 8_1:+90260977 None:intergenic
TGGAAATGTAGCACTGTGGG+AGG 0.700302 8_1:-90258161 Msa1225030:CDS
GTGCTTCCAATGACTATGTG+TGG 0.703839 8_1:-90263788 Msa1225030:CDS
TAAGGTTTACTTATTCAAGG+GGG 0.707372 8_1:-90260499 Msa1225030:CDS
ACAGAGAACATGTTAGCTCG+CGG 0.707706 8_1:-90259708 Msa1225030:CDS
CTGATGGAAATGTAGCACTG+TGG 0.749084 8_1:-90258165 Msa1225030:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATTTAAAAAATAAATATT+TGG - chr8_1:90261955-90261974 Msa1225030:intron 0.0%
!! TAAAAAAATCTTATATTCAA+CGG + chr8_1:90258578-90258597 None:intergenic 10.0%
!!! GTTAAATAATTTAAACTTTT+TGG - chr8_1:90259128-90259147 Msa1225030:intron 10.0%
!! ACTATTTAATTAATTATTCT+TGG - chr8_1:90261659-90261678 Msa1225030:CDS 10.0%
!!! TTTACTTTTTCAAATAATTT+TGG - chr8_1:90261704-90261723 Msa1225030:CDS 10.0%
!! TAATAATAATATACAATACA+TGG - chr8_1:90261777-90261796 Msa1225030:CDS 10.0%
!!! ACCAATAATTTTATAATAAA+GGG + chr8_1:90262442-90262461 None:intergenic 10.0%
!!! TATATTATAGTTTTTTTCTA+AGG + chr8_1:90262711-90262730 None:intergenic 10.0%
!!! AAAATAAAATAAGTTGATTA+TGG - chr8_1:90262813-90262832 Msa1225030:intron 10.0%
!!! TTTTTTTCTGTTTTAGTATA+AGG + chr8_1:90258091-90258110 None:intergenic 15.0%
!!! AACAAACACAATTTTTAAAT+GGG + chr8_1:90258219-90258238 None:intergenic 15.0%
!!! AAACAAACACAATTTTTAAA+TGG + chr8_1:90258220-90258239 None:intergenic 15.0%
!!! TTTATTTTTTTACTCTTCAA+AGG - chr8_1:90258252-90258271 Msa1225030:intron 15.0%
!! AAAAAAATCTTATATTCAAC+GGG + chr8_1:90258577-90258596 None:intergenic 15.0%
!!! GTTGAATATAAGATTTTTTT+AGG - chr8_1:90258577-90258596 Msa1225030:intron 15.0%
!! TGTACAATATTCAATTAAAT+TGG + chr8_1:90258905-90258924 None:intergenic 15.0%
!!! TTATTTTTAAATATTGATCG+TGG - chr8_1:90258932-90258951 Msa1225030:intron 15.0%
!! TAGATTTCAAATTAGTAATT+TGG + chr8_1:90260782-90260801 None:intergenic 15.0%
!! AAAGTAAATGAATAAGAATA+TGG + chr8_1:90261692-90261711 None:intergenic 15.0%
!!! ATTTTAAAAAATTCTTTCTG+TGG - chr8_1:90262119-90262138 Msa1225030:intron 15.0%
!! AACTAAATAAACTTACAAAA+TGG - chr8_1:90262180-90262199 Msa1225030:intron 15.0%
!! TTAATAATTCATAAGTTCAT+TGG + chr8_1:90262219-90262238 None:intergenic 15.0%
!! ACTTATGAATTATTAATCTT+TGG - chr8_1:90262223-90262242 Msa1225030:intron 15.0%
!! TAGATAAACAAAATAATACA+AGG + chr8_1:90262258-90262277 None:intergenic 15.0%
!! TCCCTTTATTATAAAATTAT+TGG - chr8_1:90262438-90262457 Msa1225030:intron 15.0%
!!! GACCAATAATTTTATAATAA+AGG + chr8_1:90262443-90262462 None:intergenic 15.0%
!! AAGTTACTAGAACATAAAAA+TGG - chr8_1:90257208-90257227 Msa1225030:three_prime_UTR 20.0%
!!! TTTTTAAGAAACACAATGAA+TGG - chr8_1:90257581-90257600 Msa1225030:CDS 20.0%
!! GAAAAAATAATGTGAAATAC+TGG + chr8_1:90257658-90257677 None:intergenic 20.0%
!!! TTTATTGAATTTTTTCTTCC+TGG - chr8_1:90257821-90257840 Msa1225030:CDS 20.0%
!! TATTCTCTTGAAAATACTTA+TGG - chr8_1:90257990-90258009 Msa1225030:CDS 20.0%
!! CTAAAACAGAAAAAAAAATC+TGG - chr8_1:90258095-90258114 Msa1225030:CDS 20.0%
!! AAAACAAAGTCAAACTTTAT+AGG + chr8_1:90258312-90258331 None:intergenic 20.0%
!!! TGAGTTTTGTCATTATTTAT+AGG + chr8_1:90258605-90258624 None:intergenic 20.0%
!! TAAAACATCCTTAAATCATT+AGG + chr8_1:90258632-90258651 None:intergenic 20.0%
!!! TGCTTTTAATTCAATGTAAT+CGG - chr8_1:90258687-90258706 Msa1225030:intron 20.0%
!! AATATTATCTGTAACAGAAA+GGG + chr8_1:90259252-90259271 None:intergenic 20.0%
!!! ACAGAAACTATAACTATTTT+TGG - chr8_1:90259784-90259803 Msa1225030:intron 20.0%
!!! CAGAAACTATAACTATTTTT+GGG - chr8_1:90259785-90259804 Msa1225030:intron 20.0%
!! AATTTATCTTCCTTCTTAAA+AGG + chr8_1:90259863-90259882 None:intergenic 20.0%
!! TAAATTAGATGTAAATGAGA+TGG - chr8_1:90259877-90259896 Msa1225030:CDS 20.0%
!! TAACTAACAATAACAAGTTA+GGG + chr8_1:90260588-90260607 None:intergenic 20.0%
!!! ACTAATTTGAAATCTAAATG+CGG - chr8_1:90260786-90260805 Msa1225030:intron 20.0%
!!! ATATAAACTGAAGTTTTTTG+TGG - chr8_1:90260831-90260850 Msa1225030:CDS 20.0%
!! TTCTAATAAATCTATTTGAC+AGG - chr8_1:90260855-90260874 Msa1225030:CDS 20.0%
!! TATGAACTAAATCTAAACAT+TGG - chr8_1:90260963-90260982 Msa1225030:CDS 20.0%
!!! TTTTACTTCTGTTAGATTAT+GGG - chr8_1:90261579-90261598 Msa1225030:CDS 20.0%
!! ATGAATAAGAATATGGATAA+AGG + chr8_1:90261685-90261704 None:intergenic 20.0%
!! ACATCAGCATAAAAATAATA+AGG + chr8_1:90261981-90262000 None:intergenic 20.0%
!! AAGTCAACTAAGAAAATAAA+TGG + chr8_1:90262013-90262032 None:intergenic 20.0%
!!! TTTAGTAATTTTTGTGATGT+TGG - chr8_1:90262584-90262603 Msa1225030:intron 20.0%
!!! TTAGTAATTTTTGTGATGTT+GGG - chr8_1:90262585-90262604 Msa1225030:intron 20.0%
!!! TATAAACATTTCTTTTCATG+AGG - chr8_1:90262727-90262746 Msa1225030:intron 20.0%
!! ATTGACAAACAAGATAAATA+TGG - chr8_1:90263131-90263150 Msa1225030:intron 20.0%
!! TCAAATATGTCAATTATCAT+TGG + chr8_1:90263812-90263831 None:intergenic 20.0%
! GGAAAAAAAAGATTCATACA+AGG - chr8_1:90257182-90257201 Msa1225030:three_prime_UTR 25.0%
!! TTGATAATTCAAGTTCTTCT+TGG + chr8_1:90257256-90257275 None:intergenic 25.0%
! AGAAAGAAGAAAACAATCAA+CGG + chr8_1:90257546-90257565 None:intergenic 25.0%
! CAAAGAATAGAATAAAAGAG+AGG + chr8_1:90257848-90257867 None:intergenic 25.0%
! TCATTAAGAAGAGATATTGT+TGG + chr8_1:90258062-90258081 None:intergenic 25.0%
!!! TTTTCTGTTTTAGTATAAGG+CGG + chr8_1:90258088-90258107 None:intergenic 25.0%
!!! ACACAATTTTTAAATGGGTT+GGG + chr8_1:90258214-90258233 None:intergenic 25.0%
!! AACACAATTTTTAAATGGGT+TGG + chr8_1:90258215-90258234 None:intergenic 25.0%
! TAACGAAAGAAATTTGATGT+TGG - chr8_1:90258391-90258410 Msa1225030:intron 25.0%
! GTTCAATAAGATGAGAAATA+GGG + chr8_1:90259066-90259085 None:intergenic 25.0%
! TGTTCAATAAGATGAGAAAT+AGG + chr8_1:90259067-90259086 None:intergenic 25.0%
! TTAAGGAATCCAAATTCAAA+TGG + chr8_1:90259215-90259234 None:intergenic 25.0%
! ATATTATCTGTAACAGAAAG+GGG + chr8_1:90259251-90259270 None:intergenic 25.0%
! CAATATTATCTGTAACAGAA+AGG + chr8_1:90259253-90259272 None:intergenic 25.0%
! GTTACAGATAATATTGTCAA+TGG - chr8_1:90259257-90259276 Msa1225030:intron 25.0%
!!! ACTATAACTATTTTTGGGTT+CGG - chr8_1:90259790-90259809 Msa1225030:intron 25.0%
!! ATAATCTGAATGATTTTCAC+AGG - chr8_1:90259904-90259923 Msa1225030:CDS 25.0%
!! TTTTACATGCTCTTTAATCT+AGG - chr8_1:90260151-90260170 Msa1225030:intron 25.0%
!! TTATCTTTTCTATTCTCTGA+TGG - chr8_1:90260495-90260514 Msa1225030:CDS 25.0%
! GATAAGGTTTACTTATTCAA+GGG - chr8_1:90260517-90260536 Msa1225030:CDS 25.0%
! ATAAGGTTTACTTATTCAAG+GGG - chr8_1:90260518-90260537 Msa1225030:CDS 25.0%
!!! AAATGATTTGCTCTTTCAAT+TGG - chr8_1:90260546-90260565 Msa1225030:CDS 25.0%
! GTAACTAACAATAACAAGTT+AGG + chr8_1:90260589-90260608 None:intergenic 25.0%
! TGTAAGATAACATCTTCTTT+AGG + chr8_1:90260705-90260724 None:intergenic 25.0%
! ACTAGAATGTAAAAATCAGT+TGG + chr8_1:90260738-90260757 None:intergenic 25.0%
! TTTACAACTTAATGCATGAT+AGG - chr8_1:90260919-90260938 Msa1225030:CDS 25.0%
! AATATTGTTCAAGCTAATGT+TGG - chr8_1:90261128-90261147 Msa1225030:intron 25.0%
! AAGAAGGTTATTCATGATTA+TGG + chr8_1:90261162-90261181 None:intergenic 25.0%
! ATATTATACAAACCTGAAGA+AGG + chr8_1:90261178-90261197 None:intergenic 25.0%
! TGTTGACATGTTTATGTATT+TGG - chr8_1:90261215-90261234 Msa1225030:CDS 25.0%
! TTACAACAATTGTTAAAACG+AGG - chr8_1:90261391-90261410 Msa1225030:intron 25.0%
!! GTTTTACTTCTGTTAGATTA+TGG - chr8_1:90261578-90261597 Msa1225030:CDS 25.0%
! TTTACTTCTGTTAGATTATG+GGG - chr8_1:90261580-90261599 Msa1225030:CDS 25.0%
!! ATTATTGCCAAGTCATATTT+TGG - chr8_1:90261849-90261868 Msa1225030:CDS 25.0%
!! TGACTTATCTTTTCCATATT+AGG - chr8_1:90262027-90262046 Msa1225030:intron 25.0%
! TCATTAAATTCAACGTGTAT+TGG + chr8_1:90262314-90262333 None:intergenic 25.0%
! AATGTTATACTAACAAGAGA+TGG - chr8_1:90262496-90262515 Msa1225030:intron 25.0%
!! AGAATTTTATAGGGAAAAAG+AGG + chr8_1:90262554-90262573 None:intergenic 25.0%
! TATCAAATTACTACTTCATC+AGG + chr8_1:90262788-90262807 None:intergenic 25.0%
!! TGAATCAGTAACAAAACTTT+TGG - chr8_1:90262896-90262915 Msa1225030:intron 25.0%
! ACAAACAAGATAAATATGGT+TGG - chr8_1:90263135-90263154 Msa1225030:intron 25.0%
! AACTTTCATAATTCACTCTT+CGG - chr8_1:90263401-90263420 Msa1225030:intron 25.0%
! TCATTTGAACACTGAAAAAT+TGG + chr8_1:90263460-90263479 None:intergenic 25.0%
! TTCAAATGAATAACAATGCA+AGG - chr8_1:90263471-90263490 Msa1225030:intron 25.0%
! TTTCAAGAGTTACTTGAAAT+TGG - chr8_1:90263590-90263609 Msa1225030:intron 25.0%
! GAAATTGGATCTAAGAAATT+TGG - chr8_1:90263605-90263624 Msa1225030:intron 25.0%
! ATTATCGTAAGTACACATTA+TGG + chr8_1:90263773-90263792 None:intergenic 25.0%
GAACTTGAATTATCAAGAGA+TGG - chr8_1:90257260-90257279 Msa1225030:exon 30.0%
TCATAAGGAGATATAATGAG+AGG + chr8_1:90257359-90257378 None:intergenic 30.0%
ATAAACAGAGAAGGAATTAC+CGG + chr8_1:90257391-90257410 None:intergenic 30.0%
GAAAAAAGGATAAACAGAGA+AGG + chr8_1:90257400-90257419 None:intergenic 30.0%
!!! TATCCTTTTTTCAACGTTCT+TGG - chr8_1:90257408-90257427 Msa1225030:CDS 30.0%
TTACCAAGAACGTTGAAAAA+AGG + chr8_1:90257414-90257433 None:intergenic 30.0%
GAAAGAAGAAAACAATCAAC+GGG + chr8_1:90257545-90257564 None:intergenic 30.0%
TGAAGATGGAATTTCTTGAA+TGG + chr8_1:90257874-90257893 None:intergenic 30.0%
TTCAAGAAATTCCATCTTCA+CGG - chr8_1:90257874-90257893 Msa1225030:CDS 30.0%
!!! TTTCTGTTTTAGTATAAGGC+GGG + chr8_1:90258087-90258106 None:intergenic 30.0%
! AGAAACACGTGTAAACTTTT+TGG + chr8_1:90258283-90258302 None:intergenic 30.0%
!!! TGACTTTGTTTTCCTTGTAT+AGG - chr8_1:90258320-90258339 Msa1225030:intron 30.0%
AGAAACAAAACGGGTAATTT+AGG + chr8_1:90258433-90258452 None:intergenic 30.0%
!!! AAATTACCCGTTTTGTTTCT+TGG - chr8_1:90258433-90258452 Msa1225030:intron 30.0%
TACATAGCCAAGAAACAAAA+CGG + chr8_1:90258443-90258462 None:intergenic 30.0%
! CATGTCAATTTGTTTAACTG+CGG - chr8_1:90258521-90258540 Msa1225030:intron 30.0%
CTCATACACCTAATGATTTA+AGG - chr8_1:90258621-90258640 Msa1225030:intron 30.0%
TTTAAATATTGATCGTGGAG+CGG - chr8_1:90258937-90258956 Msa1225030:intron 30.0%
!! TTAAACTTTTTGGCATTTGC+AGG - chr8_1:90259138-90259157 Msa1225030:intron 30.0%
TATACACAACCAATGTAACA+AGG + chr8_1:90259178-90259197 None:intergenic 30.0%
!! TATAGTTCTAACCTTCTTTG+TGG - chr8_1:90259295-90259314 Msa1225030:intron 30.0%
! ATTTCCAAGCAATCTGTTTT+GGG + chr8_1:90259358-90259377 None:intergenic 30.0%
! TATTTCCAAGCAATCTGTTT+TGG + chr8_1:90259359-90259378 None:intergenic 30.0%
TTTGTAGCTTCACAAAATCA+CGG - chr8_1:90259625-90259644 Msa1225030:CDS 30.0%
GATATGTGACAACTATATAC+TGG - chr8_1:90260053-90260072 Msa1225030:intron 30.0%
! TTTGAAGTTTAGAACAGACT+CGG - chr8_1:90260408-90260427 Msa1225030:intron 30.0%
! TTTCTATTCTCTGATGGATA+AGG - chr8_1:90260501-90260520 Msa1225030:CDS 30.0%
GGATAAGGTTTACTTATTCA+AGG - chr8_1:90260516-90260535 Msa1225030:CDS 30.0%
TAAGGTTTACTTATTCAAGG+GGG - chr8_1:90260519-90260538 Msa1225030:CDS 30.0%
AATAACAAGTTAGGGCTAAA+AGG + chr8_1:90260580-90260599 None:intergenic 30.0%
TTGCTCGATTCAACTATAAA+AGG - chr8_1:90260650-90260669 Msa1225030:CDS 30.0%
AAGATAACATCTTCTTTAGG+TGG + chr8_1:90260702-90260721 None:intergenic 30.0%
! GATTTTTACATTCTAGTCAC+TGG - chr8_1:90260741-90260760 Msa1225030:intron 30.0%
TAAATCTATTTGACAGGACT+TGG - chr8_1:90260861-90260880 Msa1225030:CDS 30.0%
! GGTAATTGATTTCAGATTGT+CGG - chr8_1:90260984-90261003 Msa1225030:CDS 30.0%
GTTCTAACTGTAAAATGTTG+TGG + chr8_1:90261062-90261081 None:intergenic 30.0%
TTGAACAATATTCAAGAAGG+TGG + chr8_1:90261120-90261139 None:intergenic 30.0%
AGCTTGAACAATATTCAAGA+AGG + chr8_1:90261123-90261142 None:intergenic 30.0%
AATCATGAATAACCTTCTTC+AGG - chr8_1:90261163-90261182 Msa1225030:intron 30.0%
ACAATTGTTAAAACGAGGTT+TGG - chr8_1:90261396-90261415 Msa1225030:intron 30.0%
CCATTATTGTCAGATTCATT+TGG + chr8_1:90261424-90261443 None:intergenic 30.0%
CCAAATGAATCTGACAATAA+TGG - chr8_1:90261421-90261440 Msa1225030:intron 30.0%
! ATGAATCTGACAATAATGGA+AGG - chr8_1:90261425-90261444 Msa1225030:intron 30.0%
GAATATTTACCTCTAACGTT+GGG + chr8_1:90261611-90261630 None:intergenic 30.0%
TGAATATTTACCTCTAACGT+TGG + chr8_1:90261612-90261631 None:intergenic 30.0%
!!! CTGTCTCTAAACTTCTTTTT+TGG - chr8_1:90261632-90261651 Msa1225030:CDS 30.0%
AAGAAACCAAATGCTTACTA+AGG + chr8_1:90261879-90261898 None:intergenic 30.0%
!!! GCAGAAGTAGAAGTTTTTTT+TGG + chr8_1:90261935-90261954 None:intergenic 30.0%
!! TAAGTGTTGACTTCCTAATA+TGG + chr8_1:90262043-90262062 None:intergenic 30.0%
TAATCATGTTGTACTCAATG+AGG - chr8_1:90262082-90262101 Msa1225030:intron 30.0%
! AAAAGAGGTATGAATAAGTC+TGG + chr8_1:90262539-90262558 None:intergenic 30.0%
AATTTACTTGCAGATTCTGA+TGG - chr8_1:90262837-90262856 Msa1225030:intron 30.0%
! ACAAAACTTTTGGCAGAAAA+TGG - chr8_1:90262906-90262925 Msa1225030:intron 30.0%
GTCAAATTCCTATTAGAACA+TGG - chr8_1:90263101-90263120 Msa1225030:intron 30.0%
!!! AAAGCTATTTTTGAAGCCAA+AGG - chr8_1:90263200-90263219 Msa1225030:intron 30.0%
CTTACTATTATCTTCTCCTT+TGG + chr8_1:90263219-90263238 None:intergenic 30.0%
AAGTTATTATTCTTACGCCT+TGG + chr8_1:90263386-90263405 None:intergenic 30.0%
ACTTTCATAATTCACTCTTC+GGG - chr8_1:90263402-90263421 Msa1225030:intron 30.0%
!! AAATTGGTCATTTTCTCCTT+TGG + chr8_1:90263444-90263463 None:intergenic 30.0%
ATGAATAACAATGCAAGGAA+TGG - chr8_1:90263476-90263495 Msa1225030:intron 30.0%
AACAATTAGTTGTCCTGAAA+AGG - chr8_1:90263529-90263548 Msa1225030:intron 30.0%
ACAATTAGTTGTCCTGAAAA+GGG - chr8_1:90263530-90263549 Msa1225030:intron 30.0%
AGTAACTCTTGAAAACTTTC+AGG + chr8_1:90263584-90263603 None:intergenic 30.0%
ATTTGGTATAGTTGCTACAA+AGG - chr8_1:90263622-90263641 Msa1225030:intron 30.0%
! AGCTGAAATTGATGATATTG+AGG - chr8_1:90263661-90263680 Msa1225030:CDS 30.0%
GATATTGAGGTTATTAGAGA+TGG - chr8_1:90263674-90263693 Msa1225030:CDS 30.0%
TATCATTGGATATATGAAGC+AGG + chr8_1:90263798-90263817 None:intergenic 30.0%
! TTTTGATAGGCATGTTTAGG+CGG + chr8_1:90257143-90257162 None:intergenic 35.0%
!! TGTTAGTACACGGTTTTGAT+AGG + chr8_1:90257156-90257175 None:intergenic 35.0%
TTCCAGTAGTTGTTAGTACA+CGG + chr8_1:90257166-90257185 None:intergenic 35.0%
ACCAAGAGAAGGTAATATTC+CGG + chr8_1:90257306-90257325 None:intergenic 35.0%
TTCAACCGAGTTTCAAATCT+TGG - chr8_1:90257486-90257505 Msa1225030:CDS 35.0%
! TCCAACCAAGATTTGAAACT+CGG + chr8_1:90257494-90257513 None:intergenic 35.0%
!! TTCTGTTGCTTTGTTTCTGA+CGG - chr8_1:90257729-90257748 Msa1225030:CDS 35.0%
ATAGAATAAAAGAGAGGACC+AGG + chr8_1:90257842-90257861 None:intergenic 35.0%
!!! TTCTGTTTTAGTATAAGGCG+GGG + chr8_1:90258086-90258105 None:intergenic 35.0%
! TCTTGGTTGTTTCCTATACA+AGG + chr8_1:90258335-90258354 None:intergenic 35.0%
ATAGGAAACAACCAAGAAGT+TGG - chr8_1:90258338-90258357 Msa1225030:intron 35.0%
!!! TTGGTGGTGTGTTTTAATGA+TGG - chr8_1:90258357-90258376 Msa1225030:intron 35.0%
ACATAGCCAAGAAACAAAAC+GGG + chr8_1:90258442-90258461 None:intergenic 35.0%
! AATGGAGATGATGAGCATTT+TGG - chr8_1:90258999-90259018 Msa1225030:intron 35.0%
!! TTTTTGGCATTTGCAGGATA+TGG - chr8_1:90259144-90259163 Msa1225030:intron 35.0%
! TTTTGGCATTTGCAGGATAT+GGG - chr8_1:90259145-90259164 Msa1225030:intron 35.0%
GGAAACTTTCCTTGTTACAT+TGG - chr8_1:90259166-90259185 Msa1225030:intron 35.0%
ATTGGTTGTGTATACTGCTT+GGG - chr8_1:90259184-90259203 Msa1225030:intron 35.0%
TGGGTATCTCCATTTGAATT+TGG - chr8_1:90259203-90259222 Msa1225030:intron 35.0%
!!! ACAAATAGGTAGTTTTGTCC+AGG + chr8_1:90259325-90259344 None:intergenic 35.0%
TGGGTTATCTACGAACAAAT+AGG + chr8_1:90259339-90259358 None:intergenic 35.0%
ATAACCCAAAACAGATTGCT+TGG - chr8_1:90259351-90259370 Msa1225030:intron 35.0%
CTTGGAAATATGCAAGAACT+TGG - chr8_1:90259369-90259388 Msa1225030:intron 35.0%
AAAGCCTAAGCATGTTGAAT+AGG + chr8_1:90259472-90259491 None:intergenic 35.0%
TATTCAACATGCTTAGGCTT+TGG - chr8_1:90259471-90259490 Msa1225030:CDS 35.0%
AGATTGAAACTTGACAGCTT+TGG - chr8_1:90259529-90259548 Msa1225030:intron 35.0%
!!! ATGTTGTTTTCTTTGAGCCT+AGG - chr8_1:90259751-90259770 Msa1225030:CDS 35.0%
!! GTGTTTGCAACCTTTTAAGA+AGG - chr8_1:90259850-90259869 Msa1225030:intron 35.0%
AACTGTTGTCAAAGTAGTGA+TGG + chr8_1:90260080-90260099 None:intergenic 35.0%
ATCACTACTTTGACAACAGT+TGG - chr8_1:90260079-90260098 Msa1225030:intron 35.0%
ACTTTGACAACAGTTGGTTA+TGG - chr8_1:90260085-90260104 Msa1225030:intron 35.0%
GGATTAACAGCATATCTGAT+TGG - chr8_1:90260172-90260191 Msa1225030:intron 35.0%
ATGACTAACTTAGTTGTCCA+TGG - chr8_1:90260199-90260218 Msa1225030:intron 35.0%
TTGTTTGTGACAAATCTCAG+AGG - chr8_1:90260302-90260321 Msa1225030:CDS 35.0%
TGTTTGTGACAAATCTCAGA+GGG - chr8_1:90260303-90260322 Msa1225030:CDS 35.0%
AAAACTTGATGCAGCTTGTA+TGG + chr8_1:90260332-90260351 None:intergenic 35.0%
ATGTGAAATGCTTGATCTGA+TGG + chr8_1:90260476-90260495 None:intergenic 35.0%
TCTTTAGGTGGAAAATACTC+CGG + chr8_1:90260690-90260709 None:intergenic 35.0%
! CAACAGTTGACTTAATCGTT+TGG + chr8_1:90261084-90261103 None:intergenic 35.0%
AACGATTAAGTCAACTGTTG+AGG - chr8_1:90261084-90261103 Msa1225030:CDS 35.0%
AGGACTTCCAAAATATGACT+TGG + chr8_1:90261859-90261878 None:intergenic 35.0%
GTTTATCTAGACTATACCAC+CGG - chr8_1:90262269-90262288 Msa1225030:intron 35.0%
TTGGTAAATGCCACTACTAA+AGG + chr8_1:90262295-90262314 None:intergenic 35.0%
TTGCAAGACATTATGCGATA+CGG - chr8_1:90262999-90263018 Msa1225030:intron 35.0%
GACAATTTCAACACTGTCTT+CGG + chr8_1:90263084-90263103 None:intergenic 35.0%
TGTTAGCACCATGTTCTAAT+AGG + chr8_1:90263112-90263131 None:intergenic 35.0%
TGATTTCTGTATGTCCTTGT+TGG + chr8_1:90263181-90263200 None:intergenic 35.0%
! GATAGTAAAGTAAGGTACCT+TGG - chr8_1:90263278-90263297 Msa1225030:intron 35.0%
GTTCACTTGTAAATCTACCA+AGG + chr8_1:90263298-90263317 None:intergenic 35.0%
GAACCATCATTTCCATGAAA+TGG + chr8_1:90263347-90263366 None:intergenic 35.0%
CAACTAATTGTTACTCTGGT+TGG + chr8_1:90263521-90263540 None:intergenic 35.0%
AGGACAACTAATTGTTACTC+TGG + chr8_1:90263525-90263544 None:intergenic 35.0%
ACAAAGGTTGTTTGCAAAGA+TGG - chr8_1:90263638-90263657 Msa1225030:intron 35.0%
!!! GGTGATCATCTTGTTTTTGT+TGG - chr8_1:90263695-90263714 Msa1225030:CDS 35.0%
!!! CATCTTGTTTTTGTTGGTAC+TGG - chr8_1:90263701-90263720 Msa1225030:CDS 35.0%
!!! TTGTTTTTGTTGGTACTGGT+GGG - chr8_1:90263705-90263724 Msa1225030:CDS 35.0%
!! ATTAGAGGGTGTTGTACAAT+TGG + chr8_1:90263741-90263760 None:intergenic 35.0%
AATTGTACAACACCCTCTAA+TGG - chr8_1:90263740-90263759 Msa1225030:CDS 35.0%
! TATGGATTGACACCATTAGA+GGG + chr8_1:90263755-90263774 None:intergenic 35.0%
! TTATGGATTGACACCATTAG+AGG + chr8_1:90263756-90263775 None:intergenic 35.0%
!! CGGTTTTGATAGGCATGTTT+AGG + chr8_1:90257146-90257165 None:intergenic 40.0%
AACCGTGTACTAACAACTAC+TGG - chr8_1:90257161-90257180 Msa1225030:three_prime_UTR 40.0%
AGTCACTATAGTCTCACAAC+CGG - chr8_1:90257284-90257303 Msa1225030:CDS 40.0%
ACCGGAATATTACCTTCTCT+TGG - chr8_1:90257302-90257321 Msa1225030:CDS 40.0%
TTTAACTCTCCGGTTACTTC+TGG + chr8_1:90257330-90257349 None:intergenic 40.0%
ACCGAGTTTCAAATCTTGGT+TGG - chr8_1:90257490-90257509 Msa1225030:CDS 40.0%
GAGTTTCAAATCTTGGTTGG+AGG - chr8_1:90257493-90257512 Msa1225030:CDS 40.0%
TCTCAACTCTGTCACAAGAA+AGG + chr8_1:90257693-90257712 None:intergenic 40.0%
ATGTGAGAATTCCGTGAAGA+TGG + chr8_1:90257888-90257907 None:intergenic 40.0%
TCACGGAATTCTCACATAGA+AGG - chr8_1:90257891-90257910 Msa1225030:CDS 40.0%
AAAACACACCACCAACTTCT+TGG + chr8_1:90258352-90258371 None:intergenic 40.0%
TTGTTTAACTGCGGTTTGTG+AGG - chr8_1:90258530-90258549 Msa1225030:intron 40.0%
TGTTTAACTGCGGTTTGTGA+GGG - chr8_1:90258531-90258550 Msa1225030:intron 40.0%
! GAGATGATGAGCATTTTGGA+TGG - chr8_1:90259003-90259022 Msa1225030:intron 40.0%
! ATGATGAGCATTTTGGATGG+CGG - chr8_1:90259006-90259025 Msa1225030:intron 40.0%
AAATAGGGATGCCAATGAGA+CGG + chr8_1:90259051-90259070 None:intergenic 40.0%
! CATTGGTTGTGTATACTGCT+TGG - chr8_1:90259183-90259202 Msa1225030:intron 40.0%
! GGGGTTTTTGTGGTTTCTTA+AGG + chr8_1:90259232-90259251 None:intergenic 40.0%
! GTAACAGAAAGGGGTTTTTG+TGG + chr8_1:90259242-90259261 None:intergenic 40.0%
AACAAGCTCAGAAGGAATGA+TGG + chr8_1:90259414-90259433 None:intergenic 40.0%
ATATGTGCAACAAGCTCAGA+AGG + chr8_1:90259422-90259441 None:intergenic 40.0%
AATAGGCCATAGGTTTGCAT+AGG + chr8_1:90259455-90259474 None:intergenic 40.0%
AAGCATGTTGAATAGGCCAT+AGG + chr8_1:90259465-90259484 None:intergenic 40.0%
ATGGCCTATTCAACATGCTT+AGG - chr8_1:90259465-90259484 Msa1225030:CDS 40.0%
! TTTTGCGGAAAACTTGTGAG+TGG + chr8_1:90259598-90259617 None:intergenic 40.0%
! GCTACAAAGTGTAGCTTTTG+CGG + chr8_1:90259613-90259632 None:intergenic 40.0%
ATCATGATCCAGCAAAGACA+TGG - chr8_1:90259984-90260003 Msa1225030:CDS 40.0%
TGTCACATATCTTGTCCACA+AGG + chr8_1:90260044-90260063 None:intergenic 40.0%
TGGTTATGGAGATTTGCATC+CGG - chr8_1:90260099-90260118 Msa1225030:intron 40.0%
ATTTGCATCCGGTGAATGAA+AGG - chr8_1:90260110-90260129 Msa1225030:intron 40.0%
TTTGCATCCGGTGAATGAAA+GGG - chr8_1:90260111-90260130 Msa1225030:intron 40.0%
ATCATCTCCCTTTCATTCAC+CGG + chr8_1:90260121-90260140 None:intergenic 40.0%
! CTGCATCAAGTTTTGCTCAT+AGG - chr8_1:90260338-90260357 Msa1225030:CDS 40.0%
ATTTGATCTTGTAGACGAGG+AGG + chr8_1:90260373-90260392 None:intergenic 40.0%
AGCATTTGATCTTGTAGACG+AGG + chr8_1:90260376-90260395 None:intergenic 40.0%
! AAGTTTAGAACAGACTCGGA+GGG - chr8_1:90260412-90260431 Msa1225030:intron 40.0%
ATGCTTGATCTGATGGCTTT+AGG + chr8_1:90260469-90260488 None:intergenic 40.0%
!! AAAGGTATCTGAGATGAAGC+CGG - chr8_1:90260668-90260687 Msa1225030:CDS 40.0%
TTGATTTCAGATTGTCGGTG+AGG - chr8_1:90260989-90261008 Msa1225030:CDS 40.0%
! GTTCAAGCTAATGTTGGTGA+CGG - chr8_1:90261134-90261153 Msa1225030:intron 40.0%
AGAGCTGAACGATCCAATTA+TGG - chr8_1:90261270-90261289 Msa1225030:CDS 40.0%
CTGAACGATCCAATTATGGA+GGG - chr8_1:90261274-90261293 Msa1225030:CDS 40.0%
! TCCAATTATGGAGGGAGTTT+TGG - chr8_1:90261282-90261301 Msa1225030:CDS 40.0%
ACCAAAACTCCCTCCATAAT+TGG + chr8_1:90261286-90261305 None:intergenic 40.0%
! CAATAATGGAAGGACAGCTT+TGG - chr8_1:90261435-90261454 Msa1225030:intron 40.0%
CAGCATATAGCAGCATGTAA+AGG - chr8_1:90261542-90261561 Msa1225030:CDS 40.0%
GGAAGTCCTTAGTAAGCATT+TGG - chr8_1:90261870-90261889 Msa1225030:intron 40.0%
TGTACTCAATGAGGAAGCAA+AGG - chr8_1:90262091-90262110 Msa1225030:intron 40.0%
TAAATGCCACTACTAAAGGC+CGG + chr8_1:90262291-90262310 None:intergenic 40.0%
ACTAACAAGAGATGGTCATG+TGG - chr8_1:90262504-90262523 Msa1225030:intron 40.0%
CTAAGGCAACACTAGTACAT+GGG + chr8_1:90262694-90262713 None:intergenic 40.0%
! TCTAAGGCAACACTAGTACA+TGG + chr8_1:90262695-90262714 None:intergenic 40.0%
ACTACTTCATCAGGCATAGA+AGG + chr8_1:90262779-90262798 None:intergenic 40.0%
TGATGGAAATGTAGCACTGT+GGG - chr8_1:90262854-90262873 Msa1225030:intron 40.0%
!! AATGGTGCTACCTTGCAAAT+TGG - chr8_1:90262924-90262943 Msa1225030:intron 40.0%
!! ACCTTGCAAATTGGTGATGT+TGG - chr8_1:90262933-90262952 Msa1225030:intron 40.0%
ACCAACATCACCAATTTGCA+AGG + chr8_1:90262937-90262956 None:intergenic 40.0%
! AAATAACAGCGTTGGAACCA+CGG - chr8_1:90263040-90263059 Msa1225030:intron 40.0%
TGTTGGTCAGCTAAATCTCT+TGG + chr8_1:90263164-90263183 None:intergenic 40.0%
AGAGATTTAGCTGACCAACA+AGG - chr8_1:90263164-90263183 Msa1225030:intron 40.0%
AGAGGCAGGATAGTAAAGTA+AGG - chr8_1:90263270-90263289 Msa1225030:intron 40.0%
GGACCATTTCATGGAAATGA+TGG - chr8_1:90263341-90263360 Msa1225030:intron 40.0%
TTCATGGAAATGATGGTTCG+TGG - chr8_1:90263348-90263367 Msa1225030:intron 40.0%
!!! CTTGTTTTTGTTGGTACTGG+TGG - chr8_1:90263704-90263723 Msa1225030:CDS 40.0%
!!! TGTTTTTGTTGGTACTGGTG+GGG - chr8_1:90263706-90263725 Msa1225030:CDS 40.0%
GTGCTTCCAATGACTATGTG+TGG - chr8_1:90257230-90257249 Msa1225030:three_prime_UTR 45.0%
TCTTGGCCACACATAGTCAT+TGG + chr8_1:90257239-90257258 None:intergenic 45.0%
TTACTTCTGGCACCAAGAGA+AGG + chr8_1:90257317-90257336 None:intergenic 45.0%
GAGGTCTGAGTTTAACTCTC+CGG + chr8_1:90257340-90257359 None:intergenic 45.0%
CTCCTTATGATCGTCGTTAC+CGG - chr8_1:90257369-90257388 Msa1225030:CDS 45.0%
TACCGGTAACGACGATCATA+AGG + chr8_1:90257374-90257393 None:intergenic 45.0%
GAAAACAATCAACGGGCGTT+GGG + chr8_1:90257538-90257557 None:intergenic 45.0%
AGAAAACAATCAACGGGCGT+TGG + chr8_1:90257539-90257558 None:intergenic 45.0%
GGAAACAACCAAGAAGTTGG+TGG - chr8_1:90258341-90258360 Msa1225030:intron 45.0%
TTTCCCTCATCCAATTCGTG+CGG + chr8_1:90258788-90258807 None:intergenic 45.0%
AAAAGTCCCACAAGCTGGTT+TGG - chr8_1:90258805-90258824 Msa1225030:intron 45.0%
AAACCACCAAACCAGCTTGT+GGG + chr8_1:90258814-90258833 None:intergenic 45.0%
!! ACAAGCTGGTTTGGTGGTTT+GGG - chr8_1:90258814-90258833 Msa1225030:intron 45.0%
! TGATGAGCATTTTGGATGGC+GGG - chr8_1:90259007-90259026 Msa1225030:intron 45.0%
AATAGGGATGCCAATGAGAC+GGG + chr8_1:90259050-90259069 None:intergenic 45.0%
AACCTTCTTTGTGGCTTACC+TGG - chr8_1:90259304-90259323 Msa1225030:intron 45.0%
! GAGTCAGCGCTATGTTTTCT+CGG - chr8_1:90259504-90259523 Msa1225030:intron 45.0%
! TGACAGCTTTGGTGCATGTT+TGG - chr8_1:90259540-90259559 Msa1225030:intron 45.0%
GTAGCTTCACAAAATCACGG+TGG - chr8_1:90259628-90259647 Msa1225030:CDS 45.0%
TTTCTGTCCTTCTCAAGCCT+AGG + chr8_1:90259771-90259790 None:intergenic 45.0%
GATCCAGCAAAGACATGGAT+TGG - chr8_1:90259989-90260008 Msa1225030:CDS 45.0%
ATTTCCTTCAGCAGTCCTTG+TGG - chr8_1:90260026-90260045 Msa1225030:intron 45.0%
!! TTCTAGTTCGACTTGTGCCA+TGG + chr8_1:90260219-90260238 None:intergenic 45.0%
CTTGTAGACGAGGAGGTAAT+TGG + chr8_1:90260366-90260385 None:intergenic 45.0%
! GAAGTTTAGAACAGACTCGG+AGG - chr8_1:90260411-90260430 Msa1225030:intron 45.0%
! CAGGACTTGGTAGTTCTCAA+AGG - chr8_1:90260874-90260893 Msa1225030:CDS 45.0%
! GACTTGGTAGTTCTCAAAGG+CGG - chr8_1:90260877-90260896 Msa1225030:CDS 45.0%
! ACTTGGTAGTTCTCAAAGGC+GGG - chr8_1:90260878-90260897 Msa1225030:CDS 45.0%
GCGAAAACAGGAGAACTTTG+TGG - chr8_1:90261011-90261030 Msa1225030:CDS 45.0%
GCTGAACGATCCAATTATGG+AGG - chr8_1:90261273-90261292 Msa1225030:CDS 45.0%
ACAGAGAACATGTTAGCTCG+CGG - chr8_1:90261310-90261329 Msa1225030:intron 45.0%
GCTGCAAAGCATAGACTTAC+CGG + chr8_1:90261349-90261368 None:intergenic 45.0%
CTATGCTTTGCAGCAGAAAG+AGG - chr8_1:90261355-90261374 Msa1225030:intron 45.0%
TTTGTGATGTTGGGTCGTCA+TGG - chr8_1:90262594-90262613 Msa1225030:intron 45.0%
! AGTACATGGGCTGTGCAATT+TGG + chr8_1:90262681-90262700 None:intergenic 45.0%
CTGATGGAAATGTAGCACTG+TGG - chr8_1:90262853-90262872 Msa1225030:intron 45.0%
CAAGACATTATGCGATACGG+TGG - chr8_1:90263002-90263021 Msa1225030:intron 45.0%
ACGCTTCCAAATAACAGCGT+TGG - chr8_1:90263032-90263051 Msa1225030:intron 45.0%
GTGGTTCCAACGCTGTTATT+TGG + chr8_1:90263041-90263060 None:intergenic 45.0%
TTTCTGTGCCTATTCCTGAG+AGG - chr8_1:90263252-90263271 Msa1225030:intron 45.0%
ACTTTACTATCCTGCCTCTC+AGG + chr8_1:90263269-90263288 None:intergenic 45.0%
! TCTTGAGGTGTAGGCATTGT+TGG + chr8_1:90263320-90263339 None:intergenic 45.0%
ACAATGCCTACACCTCAAGA+TGG - chr8_1:90263320-90263339 Msa1225030:intron 45.0%
AATGGTCCATCTTGAGGTGT+AGG + chr8_1:90263329-90263348 None:intergenic 45.0%
CCATGAAATGGTCCATCTTG+AGG + chr8_1:90263335-90263354 None:intergenic 45.0%
CCTCAAGATGGACCATTTCA+TGG - chr8_1:90263332-90263351 Msa1225030:intron 45.0%
!! TCTTACGCCTTGGTCGATTT+TGG + chr8_1:90263376-90263395 None:intergenic 45.0%
ACTCTTCGGGATAATGTCAG+CGG - chr8_1:90263415-90263434 Msa1225030:intron 45.0%
ATAATGTCAGCGGCAACCAA+AGG - chr8_1:90263425-90263444 Msa1225030:intron 45.0%
TAGTTGTCCTGAAAAGGGTG+AGG - chr8_1:90263535-90263554 Msa1225030:intron 45.0%
!!! TTTTAATTAAGAATTTTATA+GGG + chr8_1:90262563-90262582 None:intergenic 5.0%
!!! ATTTTAATTAAGAATTTTAT+AGG + chr8_1:90262564-90262583 None:intergenic 5.0%
!! CTCTTGGTGCCAGAAGTAAC+CGG - chr8_1:90257318-90257337 Msa1225030:CDS 50.0%
AAAACTCCTCGTCCCAACAG+CGG - chr8_1:90258725-90258744 Msa1225030:intron 50.0%
AAATGGGGCAATCCGCTGTT+GGG + chr8_1:90258740-90258759 None:intergenic 50.0%
!! AACAGCGGATTGCCCCATTT+GGG - chr8_1:90258740-90258759 Msa1225030:intron 50.0%
TTCCCTCATCCAATTCGTGC+GGG + chr8_1:90258787-90258806 None:intergenic 50.0%
CAAACCACCAAACCAGCTTG+TGG + chr8_1:90258815-90258834 None:intergenic 50.0%
!! CACAAGCTGGTTTGGTGGTT+TGG - chr8_1:90258813-90258832 Msa1225030:intron 50.0%
TATTGATCGTGGAGCGGAGA+CGG - chr8_1:90258943-90258962 Msa1225030:intron 50.0%
TAGGAGGAGAATACTCCCCA+AGG - chr8_1:90258971-90258990 Msa1225030:intron 50.0%
ATAGGGATGCCAATGAGACG+GGG + chr8_1:90259049-90259068 None:intergenic 50.0%
GTCCAGGTAAGCCACAAAGA+AGG + chr8_1:90259309-90259328 None:intergenic 50.0%
CCATAGGTTTGCATAGGAGC+AGG + chr8_1:90259449-90259468 None:intergenic 50.0%
CCTGCTCCTATGCAAACCTA+TGG - chr8_1:90259446-90259465 Msa1225030:CDS 50.0%
CTTTGAGCCTAGGCTTGAGA+AGG - chr8_1:90259761-90259780 Msa1225030:intron 50.0%
!! CTATTTGCTGTGCACTGTGC+TGG - chr8_1:90259932-90259951 Msa1225030:CDS 50.0%
! TGCTGGATCATGATAACGCG+CGG + chr8_1:90259978-90259997 None:intergenic 50.0%
TCGCCAATCCATGTCTTTGC+TGG + chr8_1:90259995-90260014 None:intergenic 50.0%
TTGTCCACAAGGACTGCTGA+AGG + chr8_1:90260033-90260052 None:intergenic 50.0%
! CATTCTAGTCACTGGTGCTG+TGG - chr8_1:90260749-90260768 Msa1225030:intron 50.0%
! CTTGGTAGTTCTCAAAGGCG+GGG - chr8_1:90260879-90260898 Msa1225030:CDS 50.0%
ATTGTCGGTGAGGCGAAAAC+AGG - chr8_1:90260999-90261018 Msa1225030:CDS 50.0%
GGAGAACTTTGTGGCGAGAT+TGG - chr8_1:90261020-90261039 Msa1225030:CDS 50.0%
AGAACATGTTAGCTCGCGGT+AGG - chr8_1:90261314-90261333 Msa1225030:intron 50.0%
! TGAAGCAACCCAGAAGCACA+TGG + chr8_1:90262147-90262166 None:intergenic 50.0%
ATACCACCGGCCTTTAGTAG+TGG - chr8_1:90262282-90262301 Msa1225030:intron 50.0%
TGGAAATGTAGCACTGTGGG+AGG - chr8_1:90262857-90262876 Msa1225030:intron 50.0%
CTATCCTGCCTCTCAGGAAT+AGG + chr8_1:90263263-90263282 None:intergenic 50.0%
CGTGGATCCAAAATCGACCA+AGG - chr8_1:90263366-90263385 Msa1225030:intron 50.0%
CTGAAAAGGGTGAGGTTGCT+GGG - chr8_1:90263543-90263562 Msa1225030:intron 50.0%
CAAATGGGGCAATCCGCTGT+TGG + chr8_1:90258741-90258760 None:intergenic 55.0%
!! CAACAGCGGATTGCCCCATT+TGG - chr8_1:90258739-90258758 Msa1225030:intron 55.0%
!! ACAGCGGATTGCCCCATTTG+GGG - chr8_1:90258741-90258760 Msa1225030:intron 55.0%
GGAAGTTTCCCCGCACGAAT+TGG - chr8_1:90258775-90258794 Msa1225030:intron 55.0%
TTCCCCGCACGAATTGGATG+AGG - chr8_1:90258781-90258800 Msa1225030:intron 55.0%
TCCCCGCACGAATTGGATGA+GGG - chr8_1:90258782-90258801 Msa1225030:intron 55.0%
TCCCTCATCCAATTCGTGCG+GGG + chr8_1:90258786-90258805 None:intergenic 55.0%
GAGGGAAAAGTCCCACAAGC+TGG - chr8_1:90258800-90258819 Msa1225030:intron 55.0%
!! AGTCCCACAAGCTGGTTTGG+TGG - chr8_1:90258808-90258827 Msa1225030:intron 55.0%
TGGAGCGGAGACGGAGATTT+AGG - chr8_1:90258952-90258971 Msa1225030:intron 55.0%
AGCGGAGACGGAGATTTAGG+AGG - chr8_1:90258955-90258974 Msa1225030:intron 55.0%
GAGGAGAATACTCCCCAAGG+CGG - chr8_1:90258974-90258993 Msa1225030:intron 55.0%
AGGAGAATACTCCCCAAGGC+GGG - chr8_1:90258975-90258994 Msa1225030:intron 55.0%
TCATCTCCATTCCCCGCCTT+GGG + chr8_1:90258990-90259009 None:intergenic 55.0%
ATCATCTCCATTCCCCGCCT+TGG + chr8_1:90258991-90259010 None:intergenic 55.0%
TCTCAAAGGCGGGGTTGAAC+AGG - chr8_1:90260888-90260907 Msa1225030:CDS 55.0%
CATGTTAGCTCGCGGTAGGA+TGG - chr8_1:90261318-90261337 Msa1225030:intron 55.0%
! TCGCGGTAGGATGGACTTAC+CGG - chr8_1:90261327-90261346 Msa1225030:intron 55.0%
GGGGCAAATCCCAACGTTAG+AGG - chr8_1:90261599-90261618 Msa1225030:CDS 55.0%
TCTGTGGAGCCATGTGCTTC+TGG - chr8_1:90262135-90262154 Msa1225030:intron 55.0%
CTGTGGAGCCATGTGCTTCT+GGG - chr8_1:90262136-90262155 Msa1225030:intron 55.0%
ATGCCACTACTAAAGGCCGG+TGG + chr8_1:90262288-90262307 None:intergenic 55.0%
GCACTGTGGGAGGCTATACT+TGG - chr8_1:90262867-90262886 Msa1225030:intron 55.0%
CTGTGGGAGGCTATACTTGG+AGG - chr8_1:90262870-90262889 Msa1225030:intron 55.0%
TGTGCCTATTCCTGAGAGGC+AGG - chr8_1:90263256-90263275 Msa1225030:intron 55.0%
! CCAGCAACCTCACCCTTTTC+AGG + chr8_1:90263545-90263564 None:intergenic 55.0%
CCTGAAAAGGGTGAGGTTGC+TGG - chr8_1:90263542-90263561 Msa1225030:intron 55.0%
!! CAACGGGCGTTGGGTCTAAC+AGG + chr8_1:90257529-90257548 None:intergenic 60.0%
! TGCCCCATTTGGGGTCTCGT+TGG - chr8_1:90258750-90258769 Msa1225030:intron 60.0%
CGCCAACGAGACCCCAAATG+GGG + chr8_1:90258755-90258774 None:intergenic 60.0%
CCGCCAACGAGACCCCAAAT+GGG + chr8_1:90258756-90258775 None:intergenic 60.0%
! CCCATTTGGGGTCTCGTTGG+CGG - chr8_1:90258753-90258772 Msa1225030:intron 60.0%
! CCATTTGGGGTCTCGTTGGC+GGG - chr8_1:90258754-90258773 Msa1225030:intron 60.0%
GGAGAATACTCCCCAAGGCG+GGG - chr8_1:90258976-90258995 Msa1225030:intron 60.0%
ATACTCCCCAAGGCGGGGAA+TGG - chr8_1:90258981-90259000 Msa1225030:intron 60.0%
CATCTCCATTCCCCGCCTTG+GGG + chr8_1:90258989-90259008 None:intergenic 60.0%
ATGCCAATGAGACGGGGTGG+TGG + chr8_1:90259043-90259062 None:intergenic 60.0%
TGGAACCACGGCGTTACACG+TGG - chr8_1:90263052-90263071 Msa1225030:intron 60.0%
GGCAATCCGCTGTTGGGACG+AGG + chr8_1:90258734-90258753 None:intergenic 65.0%
CCCGCCAACGAGACCCCAAA+TGG + chr8_1:90258757-90258776 None:intergenic 65.0%
! CAATGAGACGGGGTGGTGGC+AGG + chr8_1:90259039-90259058 None:intergenic 65.0%
CTGCCACCACCCCGTCTCAT+TGG - chr8_1:90259037-90259056 Msa1225030:intron 65.0%
GGGATGCCAATGAGACGGGG+TGG + chr8_1:90259046-90259065 None:intergenic 65.0%
CTCGGAGGGCTTGCAGCAAC+AGG - chr8_1:90260426-90260445 Msa1225030:intron 65.0%
GACTGCCACGTGTAACGCCG+TGG + chr8_1:90263060-90263079 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 90257115 90263925 90257115 ID=Msa1225030;Name=Msa1225030
chr8_1 mRNA 90257115 90263925 90257115 ID=Msa1225030-mRNA-1;Parent=Msa1225030;Name=Msa1225030-mRNA-1;_AED=0.08;_eAED=0.08;_QI=112|0.9|0.81|1|1|1|11|150|893
chr8_1 exon 90257115 90258190 90257115 ID=Msa1225030-mRNA-1:exon:32833;Parent=Msa1225030-mRNA-1
chr8_1 exon 90259420 90259495 90259420 ID=Msa1225030-mRNA-1:exon:32832;Parent=Msa1225030-mRNA-1
chr8_1 exon 90259584 90259778 90259584 ID=Msa1225030-mRNA-1:exon:32831;Parent=Msa1225030-mRNA-1
chr8_1 exon 90259856 90260041 90259856 ID=Msa1225030-mRNA-1:exon:32830;Parent=Msa1225030-mRNA-1
chr8_1 exon 90260131 90260163 90260131 ID=Msa1225030-mRNA-1:exon:32829;Parent=Msa1225030-mRNA-1
chr8_1 exon 90260270 90260368 90260270 ID=Msa1225030-mRNA-1:exon:32828;Parent=Msa1225030-mRNA-1
chr8_1 exon 90260473 90260718 90260473 ID=Msa1225030-mRNA-1:exon:32827;Parent=Msa1225030-mRNA-1
chr8_1 exon 90260797 90261114 90260797 ID=Msa1225030-mRNA-1:exon:32826;Parent=Msa1225030-mRNA-1
chr8_1 exon 90261210 90261302 90261210 ID=Msa1225030-mRNA-1:exon:32825;Parent=Msa1225030-mRNA-1
chr8_1 exon 90261535 90261880 90261535 ID=Msa1225030-mRNA-1:exon:32824;Parent=Msa1225030-mRNA-1
chr8_1 exon 90263650 90263925 90263650 ID=Msa1225030-mRNA-1:exon:32823;Parent=Msa1225030-mRNA-1
chr8_1 five_prime_UTR 90263814 90263925 90263814 ID=Msa1225030-mRNA-1:five_prime_utr;Parent=Msa1225030-mRNA-1
chr8_1 CDS 90263650 90263813 90263650 ID=Msa1225030-mRNA-1:cds;Parent=Msa1225030-mRNA-1
chr8_1 CDS 90261535 90261880 90261535 ID=Msa1225030-mRNA-1:cds;Parent=Msa1225030-mRNA-1
chr8_1 CDS 90261210 90261302 90261210 ID=Msa1225030-mRNA-1:cds;Parent=Msa1225030-mRNA-1
chr8_1 CDS 90260797 90261114 90260797 ID=Msa1225030-mRNA-1:cds;Parent=Msa1225030-mRNA-1
chr8_1 CDS 90260473 90260718 90260473 ID=Msa1225030-mRNA-1:cds;Parent=Msa1225030-mRNA-1
chr8_1 CDS 90260270 90260368 90260270 ID=Msa1225030-mRNA-1:cds;Parent=Msa1225030-mRNA-1
chr8_1 CDS 90260131 90260163 90260131 ID=Msa1225030-mRNA-1:cds;Parent=Msa1225030-mRNA-1
chr8_1 CDS 90259856 90260041 90259856 ID=Msa1225030-mRNA-1:cds;Parent=Msa1225030-mRNA-1
chr8_1 CDS 90259584 90259778 90259584 ID=Msa1225030-mRNA-1:cds;Parent=Msa1225030-mRNA-1
chr8_1 CDS 90259420 90259495 90259420 ID=Msa1225030-mRNA-1:cds;Parent=Msa1225030-mRNA-1
chr8_1 CDS 90257265 90258190 90257265 ID=Msa1225030-mRNA-1:cds;Parent=Msa1225030-mRNA-1
chr8_1 three_prime_UTR 90257115 90257264 90257115 ID=Msa1225030-mRNA-1:three_prime_utr;Parent=Msa1225030-mRNA-1
Gene Sequence

>Msa1225030

ATGGTGCTTCCAATGACTATGTGTGGCCAAGAAGAACTTGAATTATCAAGAGATGGAAGTCACTATAGTCTCACAACCGGAATATTACCTTCTCTTGGTGCCAGAAGTAACCGGAGAGTTAAACTCAGACCTCTCATTATATCTCCTTATGATCGTCGTTACCGGATATGGGAAACTTTCCTTGTTACATTGGTTGTGTATACTGCTTGGGTATCTCCATTTGAATTTGGATTCCTTAAGAAACCACAAAAACCCCTTTCTGTTACAGATAATATTGTCAATGGATTCTTTGCTATAGATATAGTTCTAACCTTCTTTGTGGCTTACCTGGACAAAACTACCTATTTGTTCGTAGATAACCCAAAACAGATTGCTTGGAAATATGCAAGAACTTGGTTTGTACTTGATTTTATCTCCATCATTCCTTCTGAGCTTGTTGCACATATATCTCCTGCTCCTATGCAAACCTATGGCCTATTCAACATGCTTAGGCTTTGGCGTCTTCGTAGATTTATGACAGTAAATGTTGTTTTCTTTGAGCCTAGGCTTGAGAAGGACAGAAACTATAACTATTTTTGGGTTCGGTGTGCAAAGCTTATTTGTGTTACTCTATTTGCTGTGCACTGTGCTGGATGCTTTTATTATCTTCTTGCCGCGCGTTATCATGATCCAGCAAAGACATGGATTGGCGAATCAATGTCAAATTTCCTTCAGCAGTCCTTGTGGACAAGATATGTGACAACTATATACTGGTCCATCACTACTTTGACAACAGTTGGTTATGGAGATTTGCATCCGGTGAATGAAAGGGAGATGATCTTTGTCATATTTTACATGCTCTTTAATCTAGGATTAACAGCATATCTGATTGGTAACATGACTAACTTAGTTGTCCATGGCACAAGTCGAACTAGAAAATTTAGGGATACCATACAAGCTGCATCAAGTTTTGCTCATAGGAACCAATTACCTCCTCGTCTACAAGATCAAATGCTTGCTCACTTGTGTTTGAAGTTTAGAACAGACTCGGAGGGCTTGCAGCAACAGGAGACACTTGAGTCTCTTCCTAAAGCCATCAGATCAAGCATTTCACATTATCTTTTCTATTCTCTGATGGATAAGGTTTACTTATTCAAGGGGGTTTCAAATGATTTGCTCTTTCAATTGGTATCTGAGATGAAGCCGGAGTATTTTCCACCTAAAGAAGATGTTATCTTACAAAATGAAGCTCCAACTGATTTTTACATTCTAGTCACTGGTGCTGTGGACTTGGTAGTTCTCAAAGGCGGGGTTGAACAGATTGTCGGTGAGGCGAAAACAGGAGAACTTTGTGGCGAGATTGGTGTACTTTGCTATAAGCCACAACATTTTACAGTTAGAACCAAACGATTAAGTCAACTGTTGAGGCTGAACCGTACCACCTTCTTGAATATTGTTCAAGCTAATGTTGGTGACGGAACCATAATCATGAATAACCTTCTTCAGCATTTGAAAGAGCTGAACGATCCAATTATGGAGGGAGTTTTGGTCGAGACAGAGAACATGTTAGCTCGCGGTAGGATGGACTTACCGGTAAGTCTATGCTTTGCAGCAGAAAGAGGAGATGATTTGTTGTTACAACAATTGTTAAAACGAGGTTTGGATCCAAATGAATCTGACAATAATGGAAGGACAGCTTTGCATATAGCAGCATGTAAAGGAAAAGAAAACTGTGTTTTACTTCTGTTAGATTATGGGGCAAATCCCAACGTTAGAGATTCTGATGGAAATGTAGCACTGTGGGAGGCTATACTTGGAGGACATGAATCAGTAACAAAACTTTTGGCAGAAAATGGTGCTACCTTGCAAATTGGTGATGTTGGTCAATATGCATGCACTGCAGTTGAACAGAACAATCTCAATTTGTTGCAAGACATTATGCGATACGGTGGAGACATCACGCTTCCAAATAACAGCGTTGGAACCACGGCGTTACACGTGGCAGTCTCCGAAGACAGTGTTGAAATTGTCAAATTCCTATTAGAACATGGTGCTAACATTGACAAACAAGATAAATATGGTTGGAGTCCAAGAGATTTAGCTGACCAACAAGGACATACAGAAATCAAAGCTATTTTTGAAGCCAAAGGAGAAGATAATAGTAAGATTCAATCTTTTGTTTCTGTGCCTATTCCTGAGAGGCAGGATAGTAAAGTAAGGTACCTTGGTAGATTTACAAGTGAACCAACAATGCCTACACCTCAAGATGGACCATTTCATGGAAATGATGGTTCGTGGATCCAAAATCGACCAAGGCGTAAGAATAATAACTTTCATAATTCACTCTTCGGGATAATGTCAGCGGCAACCAAAGGAGAAAATGACCAATTTTTCAGTGTTCAAATGAATAACAATGCAAGGAATGGTGTGAAGAGTGTTTCACGTCCAACCAGAGTAACAATTAGTTGTCCTGAAAAGGGTGAGGTTGCTGGGAAGCTTGTGTTGCTACCTGAAAGTTTTCAAGAGTTACTTGAAATTGGATCTAAGAAATTTGGTATAGTTGCTACAAAGGTTGTTTGCAAAGATGGAGCTGAAATTGATGATATTGAGGTTATTAGAGATGGTGATCATCTTGTTTTTGTTGGTACTGGTGGGGTGCTAGAATCCAATTGTACAACACCCTCTAATGGTGTCAATCCATAA
Protein sequence

>Msa1225030

MVLPMTMCGQEELELSRDGSHYSLTTGILPSLGARSNRRVKLRPLIISPYDRRYRIWETFLVTLVVYTAWVSPFEFGFLKKPQKPLSVTDNIVNGFFAIDIVLTFFVAYLDKTTYLFVDNPKQIAWKYARTWFVLDFISIIPSELVAHISPAPMQTYGLFNMLRLWRLRRFMTVNVVFFEPRLEKDRNYNYFWVRCAKLICVTLFAVHCAGCFYYLLAARYHDPAKTWIGESMSNFLQQSLWTRYVTTIYWSITTLTTVGYGDLHPVNEREMIFVIFYMLFNLGLTAYLIGNMTNLVVHGTSRTRKFRDTIQAASSFAHRNQLPPRLQDQMLAHLCLKFRTDSEGLQQQETLESLPKAIRSSISHYLFYSLMDKVYLFKGVSNDLLFQLVSEMKPEYFPPKEDVILQNEAPTDFYILVTGAVDLVVLKGGVEQIVGEAKTGELCGEIGVLCYKPQHFTVRTKRLSQLLRLNRTTFLNIVQANVGDGTIIMNNLLQHLKELNDPIMEGVLVETENMLARGRMDLPVSLCFAAERGDDLLLQQLLKRGLDPNESDNNGRTALHIAACKGKENCVLLLLDYGANPNVRDSDGNVALWEAILGGHESVTKLLAENGATLQIGDVGQYACTAVEQNNLNLLQDIMRYGGDITLPNNSVGTTALHVAVSEDSVEIVKFLLEHGANIDKQDKYGWSPRDLADQQGHTEIKAIFEAKGEDNSKIQSFVSVPIPERQDSKVRYLGRFTSEPTMPTPQDGPFHGNDGSWIQNRPRRKNNNFHNSLFGIMSAATKGENDQFFSVQMNNNARNGVKSVSRPTRVTISCPEKGEVAGKLVLLPESFQELLEIGSKKFGIVATKVVCKDGAEIDDIEVIRDGDHLVFVGTGGVLESNCTTPSNGVNP*