Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0639490 | XP_013455966.1 | 99.831 | 590 | 1 | 0 | 1 | 590 | 1 | 590 | 0.0 | 1221 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0639490 | sp|Q9FJH6|AB1F_ARATH | 84.588 | 558 | 86 | 0 | 33 | 590 | 38 | 595 | 0.0 | 1009 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0639490 | A0A072UJY1 | 99.831 | 590 | 1 | 0 | 1 | 590 | 1 | 590 | 0.0 | 1221 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0007850 | Msa0639490 | 0.845483 | 3.949893e-59 | -8.615850e-47 |
| Msa0056270 | Msa0639490 | 0.843382 | 1.449924e-58 | -8.615850e-47 |
| Msa0639490 | Msa0689440 | 0.802659 | 5.051082e-49 | -8.615850e-47 |
| Msa0639490 | Msa0897400 | 0.800721 | 1.261665e-48 | -8.615850e-47 |
| Msa0639490 | Msa0913240 | 0.813071 | 3.081357e-51 | -8.615850e-47 |
| Msa0639490 | Msa0963020 | 0.825944 | 3.555442e-54 | -8.615850e-47 |
| Msa0639490 | Msa0970110 | 0.810346 | 1.206842e-50 | -8.615850e-47 |
| Msa0639490 | Msa1017510 | 0.818557 | 1.842233e-52 | -8.615850e-47 |
| Msa0639490 | Msa1195300 | 0.817011 | 4.114581e-52 | -8.615850e-47 |
| Msa0639490 | Msa1420660 | 0.812829 | 3.482389e-51 | -8.615850e-47 |
| Msa0126840 | Msa0639490 | 0.815950 | 7.108276e-52 | -8.615850e-47 |
| Msa0127040 | Msa0639490 | 0.808219 | 3.448691e-50 | -8.615850e-47 |
| Msa0437020 | Msa0639490 | 0.829399 | 5.260330e-55 | -8.615850e-47 |
| Msa0468490 | Msa0639490 | 0.823079 | 1.680311e-53 | -8.615850e-47 |
| Msa0244970 | Msa0639490 | 0.804485 | 2.112302e-49 | -8.615850e-47 |
| Msa0244980 | Msa0639490 | 0.811140 | 8.123805e-51 | -8.615850e-47 |
| Msa0295250 | Msa0639490 | 0.821254 | 4.451344e-53 | -8.615850e-47 |
| Msa0546690 | Msa0639490 | 0.846879 | 1.645509e-59 | -8.615850e-47 |
| Msa0550540 | Msa0639490 | 0.828722 | 7.674951e-55 | -8.615850e-47 |
| Msa0550570 | Msa0639490 | 0.817782 | 2.758785e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0639490 | MtrunA17_Chr4g0028471 | 99.831 | 590 | 1 | 0 | 1 | 590 | 1 | 590 | 0.0 | 1221 |
| Msa0639490 | MtrunA17_Chr2g0327291 | 89.322 | 590 | 63 | 0 | 1 | 590 | 1 | 590 | 0.0 | 1082 |
| Msa0639490 | MtrunA17_Chr3g0119921 | 43.382 | 544 | 283 | 6 | 62 | 584 | 173 | 712 | 7.66e-156 | 464 |
| Msa0639490 | MtrunA17_Chr7g0220881 | 40.179 | 560 | 290 | 6 | 62 | 582 | 152 | 705 | 6.65e-144 | 433 |
| Msa0639490 | MtrunA17_Chr8g0371361 | 41.547 | 556 | 286 | 8 | 62 | 582 | 152 | 703 | 1.71e-143 | 432 |
| Msa0639490 | MtrunA17_Chr1g0181461 | 41.667 | 552 | 285 | 9 | 66 | 582 | 2 | 551 | 2.18e-141 | 421 |
| Msa0639490 | MtrunA17_Chr3g0129301 | 29.202 | 589 | 386 | 9 | 11 | 574 | 50 | 632 | 4.19e-70 | 239 |
| Msa0639490 | MtrunA17_Chr3g0129301 | 26.316 | 247 | 149 | 4 | 64 | 306 | 433 | 650 | 1.45e-19 | 92.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0639490 | AT5G60790.1 | 84.588 | 558 | 86 | 0 | 33 | 590 | 38 | 595 | 0.0 | 1009 |
| Msa0639490 | AT1G64550.1 | 44.404 | 545 | 277 | 6 | 62 | 584 | 173 | 713 | 4.05e-158 | 470 |
| Msa0639490 | AT3G54540.2 | 42.602 | 561 | 276 | 9 | 62 | 583 | 161 | 714 | 3.74e-152 | 455 |
| Msa0639490 | AT3G54540.1 | 42.602 | 561 | 276 | 9 | 62 | 583 | 161 | 714 | 3.74e-152 | 455 |
| Msa0639490 | AT5G64840.1 | 31.079 | 547 | 354 | 8 | 60 | 586 | 94 | 637 | 6.26e-75 | 252 |
| Msa0639490 | AT5G09930.1 | 31.047 | 554 | 353 | 8 | 46 | 578 | 69 | 614 | 1.53e-73 | 248 |
| Msa0639490 | AT5G09930.1 | 25.726 | 241 | 134 | 7 | 64 | 294 | 411 | 616 | 1.80e-15 | 80.5 |
| Msa0639490 | AT3G28860.1 | 28.856 | 201 | 128 | 6 | 81 | 276 | 1030 | 1220 | 1.98e-11 | 67.8 |
| Msa0639490 | AT1G28010.1 | 30.342 | 234 | 123 | 8 | 375 | 581 | 1006 | 1226 | 8.38e-11 | 65.9 |
Find 209 sgRNAs with CRISPR-Local
Find 321 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTCCCAGGATTTCCTTAA+TGG | 0.155402 | 4_3:-35407632 | Msa0639490:CDS |
| GATAGAATAAGCATCATTTA+AGG | 0.186560 | 4_3:+35406277 | None:intergenic |
| TATGGTTTACTTGGATTAAA+TGG | 0.214199 | 4_3:-35409245 | Msa0639490:CDS |
| GAAGAAGTTTGAACGTATTT+TGG | 0.216007 | 4_3:-35407666 | Msa0639490:CDS |
| TCAGCACTTGGCTGAGAAAT+TGG | 0.236239 | 4_3:-35407084 | Msa0639490:CDS |
| TCTGAATTGGAGTTAAATTA+TGG | 0.236842 | 4_3:-35409397 | Msa0639490:CDS |
| ATCTTCTCTTCCTCATTTCC+AGG | 0.257833 | 4_3:+35407020 | None:intergenic |
| GTATTATTATCAGTTTCTTT+TGG | 0.264207 | 4_3:-35406210 | Msa0639490:three_prime_UTR |
| CGAACGAAGGGTTGAGATTA+GGG | 0.290104 | 4_3:+35410621 | None:intergenic |
| CAAATGGGAGGGTGACATTA+TGG | 0.294052 | 4_3:-35406709 | Msa0639490:CDS |
| AATCAGGTTTGCTTCGATAT+TGG | 0.295033 | 4_3:-35406551 | Msa0639490:three_prime_UTR |
| ATCAGGTGGCGCATGAGATA+TGG | 0.300121 | 4_3:-35406755 | Msa0639490:CDS |
| TCTTCTCTCTCTCATCCCTT+AGG | 0.304997 | 4_3:-35410559 | Msa0639490:five_prime_UTR |
| AGGGCTGCTATTGGGAGGTT+TGG | 0.309698 | 4_3:-35406996 | Msa0639490:CDS |
| GAAGGCGAAGGCGGGGATAT+TGG | 0.322135 | 4_3:-35406670 | Msa0639490:CDS |
| CCGAACGAAGGGTTGAGATT+AGG | 0.322913 | 4_3:+35410620 | None:intergenic |
| AAGGAATATATTGCTCGATT+TGG | 0.324399 | 4_3:-35407464 | Msa0639490:CDS |
| ATCCTCTCTCTAGAGATATT+CGG | 0.334592 | 4_3:-35410343 | Msa0639490:CDS |
| AGCTGAAACTTTGGCTGCTC+AGG | 0.334938 | 4_3:-35409060 | Msa0639490:intron |
| ACAGCCTCAATTGCTACTTC+TGG | 0.335559 | 4_3:-35406886 | Msa0639490:CDS |
| TGACTTTAGGCTCATTAATC+AGG | 0.343599 | 4_3:-35406772 | Msa0639490:CDS |
| CTTCTCTCTCTCATCCCTTA+GGG | 0.343834 | 4_3:-35410558 | Msa0639490:five_prime_UTR |
| TTTGGTGTGGAGTATATATA+TGG | 0.347167 | 4_3:+35410684 | None:intergenic |
| AATCAGTGATATGAAGATTT+CGG | 0.349665 | 4_3:-35410396 | Msa0639490:CDS |
| CACCACCCTTTGGAGACTTA+TGG | 0.350545 | 4_3:-35406601 | Msa0639490:three_prime_UTR |
| CCCACTTGTACTGCTTCATC+TGG | 0.353903 | 4_3:+35407510 | None:intergenic |
| CAAAACTTACTTCAGAAAAC+TGG | 0.355736 | 4_3:+35407291 | None:intergenic |
| AGCGACCTTATCAGCTGCTT+TGG | 0.357140 | 4_3:+35410424 | None:intergenic |
| TCAGGTTTATCTAATAAATC+AGG | 0.358920 | 4_3:-35406567 | Msa0639490:three_prime_UTR |
| TATTTGTGCAGACACCATTA+AGG | 0.359994 | 4_3:+35407618 | None:intergenic |
| CATCATTTAAGGTTCAGTTT+AGG | 0.369029 | 4_3:+35406288 | None:intergenic |
| GAAGTTCTTAGCTAGTATTA+TGG | 0.369516 | 4_3:+35406522 | None:intergenic |
| GAGAAGATGAGGGCTGCTAT+TGG | 0.370014 | 4_3:-35407005 | Msa0639490:CDS |
| TGAACGTATTTATGAACGTT+TGG | 0.370645 | 4_3:-35408928 | Msa0639490:CDS |
| GTGCTTATTATTTAATTGCT+TGG | 0.375910 | 4_3:-35406342 | Msa0639490:three_prime_UTR |
| ATTGCAGATAGAGTCTTTAT+CGG | 0.376053 | 4_3:-35409452 | Msa0639490:intron |
| GGATGAGCCAACTAATCATT+TGG | 0.377600 | 4_3:-35406865 | Msa0639490:CDS |
| TCCTCTCTCTAGAGATATTC+GGG | 0.379128 | 4_3:-35410342 | Msa0639490:intron |
| TGCTTGTTAGCCATGACTTT+AGG | 0.381908 | 4_3:-35406785 | Msa0639490:CDS |
| TCTACCCTGCTTACTGCAAT+AGG | 0.386530 | 4_3:-35409212 | Msa0639490:CDS |
| CCATCAGACAAATTCTTCAT+AGG | 0.387311 | 4_3:+35406948 | None:intergenic |
| TCTCATTGTTGATTCTGAAT+TGG | 0.394499 | 4_3:-35409410 | Msa0639490:CDS |
| TTGACCAGCAAGATGGATAA+TGG | 0.395924 | 4_3:-35406316 | Msa0639490:three_prime_UTR |
| GTACTCTTTCCAGCACCATT+TGG | 0.396145 | 4_3:+35407191 | None:intergenic |
| GCTGAAATCTTAGATGGTCT+TGG | 0.397956 | 4_3:-35408870 | Msa0639490:CDS |
| TTTCTGCGGTTGATGCATCT+AGG | 0.401162 | 4_3:+35408901 | None:intergenic |
| CTTATGGCCTTGCTTACATC+AGG | 0.402681 | 4_3:-35406585 | Msa0639490:three_prime_UTR |
| AGCTGTTAGTGATGAGATAT+AGG | 0.402720 | 4_3:-35406642 | Msa0639490:three_prime_UTR |
| GTCTCCAAAGGGTGGTGGTT+TGG | 0.403169 | 4_3:+35406607 | None:intergenic |
| TGGATATTCATCACCTTAGC+AGG | 0.407935 | 4_3:-35409160 | Msa0639490:CDS |
| TCCAGACGTTATGGTTTACT+TGG | 0.408460 | 4_3:-35409254 | Msa0639490:intron |
| AAGGGTTGAGATTAGGGTTG+TGG | 0.409947 | 4_3:+35410627 | None:intergenic |
| GGAGAAAGAAGCTGAAACTT+TGG | 0.410674 | 4_3:-35409069 | Msa0639490:CDS |
| GGAGGCACCCACCAAGATAT+TGG | 0.419291 | 4_3:+35406492 | None:intergenic |
| CTTGGCTGAGAAATTGGACT+TGG | 0.419614 | 4_3:-35407078 | Msa0639490:CDS |
| TAAATTTGGTTACAGGATGA+TGG | 0.428939 | 4_3:-35408966 | Msa0639490:intron |
| AGAAGATGAGGGCTGCTATT+GGG | 0.429033 | 4_3:-35407004 | Msa0639490:CDS |
| TCAATATCCAAATGATTAGT+TGG | 0.429150 | 4_3:+35406858 | None:intergenic |
| CATAATGTCACCCTCCCATT+TGG | 0.429695 | 4_3:+35406710 | None:intergenic |
| CTTAGACTCTAGGATTGCTC+TGG | 0.432478 | 4_3:-35407219 | Msa0639490:CDS |
| ACTTCAGAAAACTGGAGAAC+AGG | 0.434793 | 4_3:+35407299 | None:intergenic |
| TGTCCCATTATCCATCTTGC+TGG | 0.442873 | 4_3:+35406312 | None:intergenic |
| TTACTTGGATTAAATGGTTG+TGG | 0.447320 | 4_3:-35409239 | Msa0639490:CDS |
| TATCATAAATATAGTATTGT+CGG | 0.449438 | 4_3:+35406243 | None:intergenic |
| GACTCTAGGATTGCTCTGGT+TGG | 0.451696 | 4_3:-35407215 | Msa0639490:CDS |
| GGCCTTACCACCACGTTTAG+CGG | 0.454166 | 4_3:+35410463 | None:intergenic |
| TGACCAGCAAGATGGATAAT+GGG | 0.454508 | 4_3:-35406315 | Msa0639490:three_prime_UTR |
| ATTTCGGATCGGACTTGTAC+TGG | 0.457445 | 4_3:-35410380 | Msa0639490:CDS |
| GGAGTATGAGTGGTGAAGTT+TGG | 0.457775 | 4_3:+35410666 | None:intergenic |
| AAGTTACCAAGATGATTAGT+TGG | 0.459793 | 4_3:+35408732 | None:intergenic |
| GGTTGTGATATCACATTCCC+AGG | 0.464036 | 4_3:-35407645 | Msa0639490:CDS |
| ACCACGTTTAGCGGCGGCGG+CGG | 0.465477 | 4_3:+35410472 | None:intergenic |
| CTTCAGTACAACCAATATCT+TGG | 0.465681 | 4_3:-35406503 | Msa0639490:three_prime_UTR |
| AACGTTCATAAATACGTTCA+AGG | 0.466725 | 4_3:+35408931 | None:intergenic |
| TTCTTCCAAAGCAGCTGATA+AGG | 0.468343 | 4_3:-35410429 | Msa0639490:CDS |
| GCATTCCTATTGCAGTAAGC+AGG | 0.469207 | 4_3:+35409207 | None:intergenic |
| TTAGGGTTGTGGTTTGAAAG+AGG | 0.473496 | 4_3:+35410638 | None:intergenic |
| CCTAATCTCAACCCTTCGTT+CGG | 0.474647 | 4_3:-35410620 | Msa0639490:five_prime_UTR |
| TCAGGTGGCGCATGAGATAT+GGG | 0.475280 | 4_3:-35406754 | Msa0639490:CDS |
| TGATGAAGAAAGGTTGCAAT+TGG | 0.476798 | 4_3:-35409090 | Msa0639490:CDS |
| TATTGAGACAATTGACTCCT+TGG | 0.477061 | 4_3:-35406841 | Msa0639490:CDS |
| AAGCATCTGAAGGCGAAGGC+GGG | 0.478821 | 4_3:-35406678 | Msa0639490:CDS |
| TAGGCCAAACCACCACCCTT+TGG | 0.479157 | 4_3:-35406611 | Msa0639490:three_prime_UTR |
| AGACACCATTAAGGAAATCC+TGG | 0.479174 | 4_3:+35407627 | None:intergenic |
| CTGGTTGGACCAAATGGTGC+TGG | 0.479286 | 4_3:-35407200 | Msa0639490:CDS |
| TTGCAACCTTTCTTCATCAC+AGG | 0.480984 | 4_3:+35409094 | None:intergenic |
| TTCTGCGGTTGATGCATCTA+GGG | 0.481859 | 4_3:+35408902 | None:intergenic |
| TTGTGTTTGAATTTCGAAGA+TGG | 0.481860 | 4_3:-35410534 | Msa0639490:exon |
| GAAGCAGTACAAGTGGGAAC+AGG | 0.482565 | 4_3:-35407504 | Msa0639490:CDS |
| ATCCCACTCATTCAATGCCT+CGG | 0.483892 | 4_3:+35406818 | None:intergenic |
| ATTGGGAGGTTTGGACTGAC+AGG | 0.484846 | 4_3:-35406987 | Msa0639490:CDS |
| AGTATTCCGCTTCACTGATG+TGG | 0.487881 | 4_3:-35407336 | Msa0639490:CDS |
| TCTTCTCTTCCTCATTTCCA+GGG | 0.489690 | 4_3:+35407021 | None:intergenic |
| CGTGCTGCTGAAATCTTAGA+TGG | 0.490419 | 4_3:-35408876 | Msa0639490:CDS |
| ACCACCACGTTTAGCGGCGG+CGG | 0.490492 | 4_3:+35410469 | None:intergenic |
| GATATTGAGCAATTCGAAGA+TGG | 0.490587 | 4_3:+35407108 | None:intergenic |
| CTGATCAGAAAGTGACCAAA+TGG | 0.491350 | 4_3:-35406725 | Msa0639490:CDS |
| CGCCGCTAAACGTGGTGGTA+AGG | 0.493469 | 4_3:-35410465 | Msa0639490:CDS |
| TTGTTTGGATTGAGATAACT+TGG | 0.496182 | 4_3:-35406410 | Msa0639490:three_prime_UTR |
| GGTGATTTGTTTCCTAGTGA+TGG | 0.498265 | 4_3:-35407149 | Msa0639490:CDS |
| TTGGGGTTGACTTAGACTCT+AGG | 0.501919 | 4_3:-35407229 | Msa0639490:CDS |
| GATGAACCAACTAATCATCT+TGG | 0.503837 | 4_3:-35408738 | Msa0639490:intron |
| ATTGCTCTGGTTGGACCAAA+TGG | 0.504021 | 4_3:-35407206 | Msa0639490:CDS |
| AGGCTTCAATTTCCCTGCTA+AGG | 0.505225 | 4_3:+35409147 | None:intergenic |
| AGAAAACTGGAGAACAGGAG+GGG | 0.505371 | 4_3:+35407304 | None:intergenic |
| ATATCCATGTGCTCAGGAAT+CGG | 0.505823 | 4_3:+35409176 | None:intergenic |
| TTTGGAAGAAGCAGCGGCTG+CGG | 0.507914 | 4_3:+35410442 | None:intergenic |
| TTCAGCAAAACTAGCTCGCC+AGG | 0.509474 | 4_3:-35407435 | Msa0639490:CDS |
| TGTTCAGACTCGTGGTGACT+TGG | 0.515232 | 4_3:-35407540 | Msa0639490:CDS |
| AGCCTCTGACATGTCTGCAT+TGG | 0.520639 | 4_3:-35409129 | Msa0639490:CDS |
| TGTGGTTTGAAAGAGGAAGA+TGG | 0.522076 | 4_3:+35410645 | None:intergenic |
| CTCATCATAAACTGAAGGGC+AGG | 0.530872 | 4_3:+35407050 | None:intergenic |
| GCTGTTAGTGATGAGATATA+GGG | 0.531494 | 4_3:-35406641 | Msa0639490:three_prime_UTR |
| TATATTGCTCGATTTGGTCA+TGG | 0.531607 | 4_3:-35407458 | Msa0639490:CDS |
| TGAGAGAGAGAAGATAGATC+TGG | 0.533169 | 4_3:+35410568 | None:intergenic |
| GAAAACTGGAGAACAGGAGG+GGG | 0.533791 | 4_3:+35407305 | None:intergenic |
| GACAATTGACTCCTTGGCCG+AGG | 0.534952 | 4_3:-35406835 | Msa0639490:CDS |
| GTATTCCGCTTCACTGATGT+GGG | 0.537969 | 4_3:-35407335 | Msa0639490:CDS |
| AGTCGGTTCCGATGAAAAGA+TGG | 0.538929 | 4_3:+35410595 | None:intergenic |
| AGCTTTCTTCTTGCTAGCGT+CGG | 0.542244 | 4_3:+35410508 | None:intergenic |
| AAATTCAAACACAAACCCTA+AGG | 0.542306 | 4_3:+35410543 | None:intergenic |
| TGATGAATATCCATGTGCTC+AGG | 0.545545 | 4_3:+35409170 | None:intergenic |
| AATTCTTCATAGGCATCACC+TGG | 0.549166 | 4_3:+35406958 | None:intergenic |
| GCTTACTGCAATAGGAATGC+GGG | 0.552380 | 4_3:-35409204 | Msa0639490:CDS |
| TCAGCTTCTTACTTTGCATG+TGG | 0.552733 | 4_3:+35407591 | None:intergenic |
| AGCTCGCCAGGCACAGAGCA+AGG | 0.552992 | 4_3:-35407423 | Msa0639490:CDS |
| CGCTTGACCATGCCATCACT+AGG | 0.553023 | 4_3:+35407137 | None:intergenic |
| GTTGAGTTCAATGGCAGAGT+CGG | 0.555106 | 4_3:-35406447 | Msa0639490:three_prime_UTR |
| ATTCACTCATCATAAACTGA+AGG | 0.557664 | 4_3:+35407045 | None:intergenic |
| TTTGTTTCCTAGTGATGGCA+TGG | 0.558297 | 4_3:-35407144 | Msa0639490:CDS |
| CAGTACAACCAATATCTTGG+TGG | 0.560812 | 4_3:-35406500 | Msa0639490:three_prime_UTR |
| TTGGTTCTTGACCAGCAAGA+TGG | 0.561244 | 4_3:-35406323 | Msa0639490:three_prime_UTR |
| AGCAATATATTCCTTCATGT+TGG | 0.561912 | 4_3:+35407472 | None:intergenic |
| AATTGGAGTTAAATTATGGA+AGG | 0.564752 | 4_3:-35409393 | Msa0639490:intron |
| CAGAAAACTGGAGAACAGGA+GGG | 0.565180 | 4_3:+35407303 | None:intergenic |
| TCATAACCTGTGATGAAGAA+AGG | 0.568129 | 4_3:-35409100 | Msa0639490:CDS |
| AAGATAGATCTGGCCTAAGT+CGG | 0.568371 | 4_3:+35410578 | None:intergenic |
| TCATCCAGAAGTAGCAATTG+AGG | 0.569015 | 4_3:+35406882 | None:intergenic |
| ATAAGCACAACAAATAATAA+CGG | 0.569143 | 4_3:+35406357 | None:intergenic |
| ACGTTCATAAATACGTTCAA+GGG | 0.570004 | 4_3:+35408932 | None:intergenic |
| TGGTTCATCGAGTAGAAGAA+TGG | 0.570541 | 4_3:+35408752 | None:intergenic |
| TCATCGAGTAGAAGAATGGT+GGG | 0.571360 | 4_3:+35408756 | None:intergenic |
| AGCATCTGAAGGCGAAGGCG+GGG | 0.573321 | 4_3:-35406677 | Msa0639490:CDS |
| GAAAAGATGGAGCCGAACGA+AGG | 0.573743 | 4_3:+35410608 | None:intergenic |
| CTCATTCAATGCCTCGGCCA+AGG | 0.573903 | 4_3:+35406824 | None:intergenic |
| TGCTCAATATCATCAGCACT+TGG | 0.575155 | 4_3:-35407096 | Msa0639490:CDS |
| CTATGAAGAATTTGTCTGAT+GGG | 0.576561 | 4_3:-35406947 | Msa0639490:CDS |
| CAAGGCCATAAGTCTCCAAA+GGG | 0.577796 | 4_3:+35406596 | None:intergenic |
| GAAGCATCTGAAGGCGAAGG+CGG | 0.578889 | 4_3:-35406679 | Msa0639490:CDS |
| AAAAGATGGAGCCGAACGAA+GGG | 0.584128 | 4_3:+35410609 | None:intergenic |
| GTGGTGATTGTTGAGTTCAA+TGG | 0.585033 | 4_3:-35406456 | Msa0639490:three_prime_UTR |
| TGCTTACTGCAATAGGAATG+CGG | 0.585830 | 4_3:-35409205 | Msa0639490:CDS |
| TGGCCGAGGCATTGAATGAG+TGG | 0.593068 | 4_3:-35406821 | Msa0639490:CDS |
| GCAAGGCCATAAGTCTCCAA+AGG | 0.593440 | 4_3:+35406595 | None:intergenic |
| AGATAAACCTGATGTAAGCA+AGG | 0.594800 | 4_3:+35406578 | None:intergenic |
| GAAATGAGGAAGAGAAGATG+AGG | 0.595660 | 4_3:-35407016 | Msa0639490:CDS |
| GCCGCCGCCGCCGCTAAACG+TGG | 0.595826 | 4_3:-35410473 | Msa0639490:CDS |
| TGATCAGAAAGTGACCAAAT+GGG | 0.596562 | 4_3:-35406724 | Msa0639490:CDS |
| GACACCATTAAGGAAATCCT+GGG | 0.599092 | 4_3:+35407628 | None:intergenic |
| ACACTGCTGAAGCTAATGAC+AGG | 0.601098 | 4_3:-35407170 | Msa0639490:CDS |
| TGGTTACAGGATGATGGAGG+TGG | 0.601235 | 4_3:-35408960 | Msa0639490:intron |
| CATAAGTCTCCAAAGGGTGG+TGG | 0.603246 | 4_3:+35406602 | None:intergenic |
| CAAGAAGCATCTGAAGGCGA+AGG | 0.605026 | 4_3:-35406682 | Msa0639490:CDS |
| CAGATTTGGAAGCTTGTGTG+TGG | 0.605348 | 4_3:-35407703 | Msa0639490:CDS |
| GATTAATGAGCCTAAAGTCA+TGG | 0.606985 | 4_3:+35406775 | None:intergenic |
| ACTTCCGATTCCTGAGCACA+TGG | 0.608657 | 4_3:-35409180 | Msa0639490:CDS |
| GAGTGAATACCCTGGAAATG+AGG | 0.608906 | 4_3:-35407030 | Msa0639490:CDS |
| AATTCAAACACAAACCCTAA+GGG | 0.609694 | 4_3:+35410544 | None:intergenic |
| GGAGCAGATTGCCAACATGA+AGG | 0.612931 | 4_3:-35407483 | Msa0639490:CDS |
| GGATTTCAAGAAGCATCTGA+AGG | 0.613484 | 4_3:-35406688 | Msa0639490:CDS |
| ACCAGATGAAGCAGTACAAG+TGG | 0.613873 | 4_3:-35407511 | Msa0639490:CDS |
| TTTGGATTGAGATAACTTGG+TGG | 0.614623 | 4_3:-35406407 | Msa0639490:three_prime_UTR |
| CATTCCTATTGCAGTAAGCA+GGG | 0.618085 | 4_3:+35409208 | None:intergenic |
| AGAGGAAGATGGAGTATGAG+TGG | 0.621019 | 4_3:+35410656 | None:intergenic |
| AGAGTCGAGTAATCTTTGCA+TGG | 0.621080 | 4_3:-35406920 | Msa0639490:CDS |
| CCTATGAAGAATTTGTCTGA+TGG | 0.621484 | 4_3:-35406948 | Msa0639490:CDS |
| CTTTAGGCTCATTAATCAGG+TGG | 0.621832 | 4_3:-35406769 | Msa0639490:CDS |
| AGATGAGGGCTGCTATTGGG+AGG | 0.621874 | 4_3:-35407001 | Msa0639490:CDS |
| ATTTGGTTACAGGATGATGG+AGG | 0.622194 | 4_3:-35408963 | Msa0639490:intron |
| AGCTGCTTTGGAAGAAGCAG+CGG | 0.624417 | 4_3:+35410436 | None:intergenic |
| TGAGATATAGGGATAGAACT+AGG | 0.625271 | 4_3:-35406630 | Msa0639490:three_prime_UTR |
| TGGACTGACAGGTAAAGCCC+AGG | 0.625338 | 4_3:-35406976 | Msa0639490:CDS |
| GAATGAGTGGGATGGCGGCA+TGG | 0.625736 | 4_3:-35406808 | Msa0639490:CDS |
| TCAGAAAACTGGAGAACAGG+AGG | 0.625791 | 4_3:+35407302 | None:intergenic |
| CAGAAAGTGACCAAATGGGA+GGG | 0.626666 | 4_3:-35406720 | Msa0639490:CDS |
| GAGGCATTGAATGAGTGGGA+TGG | 0.626891 | 4_3:-35406816 | Msa0639490:CDS |
| ATGAGTGGTGAAGTTTGGTG+TGG | 0.627223 | 4_3:+35410671 | None:intergenic |
| TTCACTCATCATAAACTGAA+GGG | 0.629235 | 4_3:+35407046 | None:intergenic |
| TTCATCGAGTAGAAGAATGG+TGG | 0.635101 | 4_3:+35408755 | None:intergenic |
| AGTACAACCAATATCTTGGT+GGG | 0.637128 | 4_3:-35406499 | Msa0639490:three_prime_UTR |
| AAGAAGCTGAAGATTTACAC+TGG | 0.638565 | 4_3:-35407578 | Msa0639490:CDS |
| GCCGCCGCCGCTAAACGTGG+TGG | 0.638651 | 4_3:-35410470 | Msa0639490:CDS |
| AAATGAGGAAGAGAAGATGA+GGG | 0.639167 | 4_3:-35407015 | Msa0639490:CDS |
| ACGAGGTGGACTCACAGAGA+AGG | 0.639258 | 4_3:-35407378 | Msa0639490:CDS |
| GTGATATGAAGATTTCGGAT+CGG | 0.641156 | 4_3:-35410391 | Msa0639490:CDS |
| GGCCGAGGCATTGAATGAGT+GGG | 0.643694 | 4_3:-35406820 | Msa0639490:CDS |
| GCATTGAATGAGTGGGATGG+CGG | 0.643695 | 4_3:-35406813 | Msa0639490:CDS |
| GATCAATATGTTCAGACTCG+TGG | 0.643969 | 4_3:-35407548 | Msa0639490:CDS |
| GGATATTCATCACCTTAGCA+GGG | 0.652225 | 4_3:-35409159 | Msa0639490:CDS |
| TCAGAAAGTGACCAAATGGG+AGG | 0.653363 | 4_3:-35406721 | Msa0639490:CDS |
| GGCCATAAGTCTCCAAAGGG+TGG | 0.655589 | 4_3:+35406599 | None:intergenic |
| TTCCAATGCAGACATGTCAG+AGG | 0.661870 | 4_3:+35409127 | None:intergenic |
| ACCCGAATATCTCTAGAGAG+AGG | 0.665050 | 4_3:+35410341 | None:intergenic |
| CTTACCACCACGTTTAGCGG+CGG | 0.666853 | 4_3:+35410466 | None:intergenic |
| AAAACTGGAGAACAGGAGGG+GGG | 0.666914 | 4_3:+35407306 | None:intergenic |
| CCAGATGAAGCAGTACAAGT+GGG | 0.690738 | 4_3:-35407510 | Msa0639490:CDS |
| ATTCTTCATAGGCATCACCT+GGG | 0.706152 | 4_3:+35406959 | None:intergenic |
| CATCGAGTAGAAGAATGGTG+GGG | 0.710127 | 4_3:+35408757 | None:intergenic |
| TTTATGATGAGTGAATACCC+TGG | 0.737237 | 4_3:-35407038 | Msa0639490:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAAAGTACATAATAAAATT+TGG | + | chr4_3:35407551-35407570 | None:intergenic | 10.0% |
| !! | TTGTTTAAATATGAAGTTAA+TGG | - | chr4_3:35406661-35406680 | Msa0639490:exon | 15.0% |
| !! | CAGATTTATATGTATAAATT+TGG | - | chr4_3:35406811-35406830 | Msa0639490:CDS | 15.0% |
| !!! | AGTATGTGATTTTTTTTTTT+TGG | - | chr4_3:35407087-35407106 | Msa0639490:CDS | 15.0% |
| !!! | TTTTTTAATGATTTGAGTTA+TGG | - | chr4_3:35408538-35408557 | Msa0639490:intron | 15.0% |
| !! | TTTGTAACAGATTATAAAAA+AGG | + | chr4_3:35408626-35408645 | None:intergenic | 15.0% |
| !!! | TTTTTATAATCTGTTACAAA+CGG | - | chr4_3:35408626-35408645 | Msa0639490:intron | 15.0% |
| !! | ATTACTTTGAATAATTTAGT+GGG | - | chr4_3:35408680-35408699 | Msa0639490:intron | 15.0% |
| !! | TATCATAAATATAGTATTGT+CGG | + | chr4_3:35410633-35410652 | None:intergenic | 15.0% |
| !!! | TATTATTATCAGTTTCTTTT+GGG | - | chr4_3:35410664-35410683 | Msa0639490:five_prime_UTR | 15.0% |
| !!! | ATCTTAATCATTTTGATTGA+TGG | - | chr4_3:35406849-35406868 | Msa0639490:CDS | 20.0% |
| !!! | AAGTTGATATATGATTGAAT+CGG | - | chr4_3:35406883-35406902 | Msa0639490:CDS | 20.0% |
| !!! | AAGGTAGAAATTTTCTTAAT+TGG | + | chr4_3:35407022-35407041 | None:intergenic | 20.0% |
| !! | AATTAAGAAAATTTCTACCT+TGG | - | chr4_3:35407021-35407040 | Msa0639490:CDS | 20.0% |
| !!! | TATGTACTTTTATTTAAACC+TGG | - | chr4_3:35407559-35407578 | Msa0639490:CDS | 20.0% |
| !! | TTGCTAACTTTGAATAAATT+TGG | - | chr4_3:35407893-35407912 | Msa0639490:intron | 20.0% |
| !! | ATAAACAAAGAAAAAAGACT+AGG | + | chr4_3:35408376-35408395 | None:intergenic | 20.0% |
| !!! | ATTTTGTTCAAAAGGATTTA+GGG | + | chr4_3:35408652-35408671 | None:intergenic | 20.0% |
| !!! | TATTTTGTTCAAAAGGATTT+AGG | + | chr4_3:35408653-35408672 | None:intergenic | 20.0% |
| !! | CACTAAATTATTCAAAGTAA+TGG | + | chr4_3:35408681-35408700 | None:intergenic | 20.0% |
| !! | CATTACTTTGAATAATTTAG+TGG | - | chr4_3:35408679-35408698 | Msa0639490:intron | 20.0% |
| !!! | CACTATCATTTTATTTTATG+CGG | - | chr4_3:35408961-35408980 | Msa0639490:intron | 20.0% |
| !!! | ACTATCATTTTATTTTATGC+GGG | - | chr4_3:35408962-35408981 | Msa0639490:intron | 20.0% |
| !!! | TAGTTAGTTGATAAATGTAT+AGG | + | chr4_3:35409139-35409158 | None:intergenic | 20.0% |
| !! | ATAAGCACAACAAATAATAA+CGG | + | chr4_3:35410519-35410538 | None:intergenic | 20.0% |
| !!! | GTATTATTATCAGTTTCTTT+TGG | - | chr4_3:35410663-35410682 | Msa0639490:five_prime_UTR | 20.0% |
| ! | AATCAGTGATATGAAGATTT+CGG | - | chr4_3:35406477-35406496 | Msa0639490:three_prime_UTR | 25.0% |
| ! | AGTTAATGGTGATTATGTAT+TGG | - | chr4_3:35406675-35406694 | Msa0639490:CDS | 25.0% |
| ! | TATAATTTCGTCATCATCAA+AGG | + | chr4_3:35406912-35406931 | None:intergenic | 25.0% |
| !! | AGCAAAAAACTTAAGCTTTT+GGG | + | chr4_3:35406941-35406960 | None:intergenic | 25.0% |
| !! | TAGCAAAAAACTTAAGCTTT+TGG | + | chr4_3:35406942-35406961 | None:intergenic | 25.0% |
| !! | ATTTTCTTAATTGGCCAAAA+GGG | + | chr4_3:35407013-35407032 | None:intergenic | 25.0% |
| !! | AATTTTCTTAATTGGCCAAA+AGG | + | chr4_3:35407014-35407033 | None:intergenic | 25.0% |
| ! | TGGAAATGTTTAGTATTTAG+CGG | - | chr4_3:35407107-35407126 | Msa0639490:CDS | 25.0% |
| !! | TTAGTTTATTGTTGTTAGCA+TGG | - | chr4_3:35407182-35407201 | Msa0639490:CDS | 25.0% |
| !! | TAGTTTATTGTTGTTAGCAT+GGG | - | chr4_3:35407183-35407202 | Msa0639490:CDS | 25.0% |
| ! | TCTGAATTGGAGTTAAATTA+TGG | - | chr4_3:35407476-35407495 | Msa0639490:CDS | 25.0% |
| ! | AATTGGAGTTAAATTATGGA+AGG | - | chr4_3:35407480-35407499 | Msa0639490:CDS | 25.0% |
| ! | TAATAAAATTTGGCTGTACT+CGG | + | chr4_3:35407541-35407560 | None:intergenic | 25.0% |
| ! | TATGGTTTACTTGGATTAAA+TGG | - | chr4_3:35407628-35407647 | Msa0639490:CDS | 25.0% |
| ! | CTTTGAATAAATTTGGTTAC+AGG | - | chr4_3:35407900-35407919 | Msa0639490:intron | 25.0% |
| ! | ATAAATTTCAGACAAACAAG+AGG | + | chr4_3:35408186-35408205 | None:intergenic | 25.0% |
| ! | GTAAAAAACAGAGTAACAAA+TGG | + | chr4_3:35408432-35408451 | None:intergenic | 25.0% |
| !! | GGCAAAATATTTTGTTCAAA+AGG | + | chr4_3:35408660-35408679 | None:intergenic | 25.0% |
| !!! | GCTTTAACTATGTCTTTTTT+TGG | - | chr4_3:35408818-35408837 | Msa0639490:CDS | 25.0% |
| !!! | ATGCTTTACTATGTCTTTTT+TGG | - | chr4_3:35408863-35408882 | Msa0639490:CDS | 25.0% |
| ! | TGCATAATACAGACATAAAA+GGG | + | chr4_3:35408943-35408962 | None:intergenic | 25.0% |
| !!! | CTATCATTTTATTTTATGCG+GGG | - | chr4_3:35408963-35408982 | Msa0639490:intron | 25.0% |
| !!! | TATCATTTTATTTTATGCGG+GGG | - | chr4_3:35408964-35408983 | Msa0639490:intron | 25.0% |
| ! | CTATTGTTTGTTTACAGATT+TGG | - | chr4_3:35409156-35409175 | Msa0639490:CDS | 25.0% |
| ! | TCAATATCCAAATGATTAGT+TGG | + | chr4_3:35410018-35410037 | None:intergenic | 25.0% |
| ! | TCAGGTTTATCTAATAAATC+AGG | - | chr4_3:35410306-35410325 | Msa0639490:intron | 25.0% |
| ! | GTGCTTATTATTTAATTGCT+TGG | - | chr4_3:35410531-35410550 | Msa0639490:exon | 25.0% |
| ! | GATAGAATAAGCATCATTTA+AGG | + | chr4_3:35410599-35410618 | None:intergenic | 25.0% |
| ! | TTTGGTGTGGAGTATATATA+TGG | + | chr4_3:35406192-35406211 | None:intergenic | 30.0% |
| AATTCAAACACAAACCCTAA+GGG | + | chr4_3:35406332-35406351 | None:intergenic | 30.0% | |
| AAATTCAAACACAAACCCTA+AGG | + | chr4_3:35406333-35406352 | None:intergenic | 30.0% | |
| TTGTGTTTGAATTTCGAAGA+TGG | - | chr4_3:35406339-35406358 | Msa0639490:three_prime_UTR | 30.0% | |
| TTGATATATGATTGAATCGG+TGG | - | chr4_3:35406886-35406905 | Msa0639490:CDS | 30.0% | |
| !!! | AAGCTTAAGTTTTTTGCTAC+TGG | - | chr4_3:35406943-35406962 | Msa0639490:CDS | 30.0% |
| TAATGGTTACATTCACAACA+TGG | + | chr4_3:35407275-35407294 | None:intergenic | 30.0% | |
| TACCTCCAAAAAATTGGAAT+AGG | + | chr4_3:35407302-35407321 | None:intergenic | 30.0% | |
| !!! | TATTCCAATTTTTTGGAGGT+AGG | - | chr4_3:35407301-35407320 | Msa0639490:CDS | 30.0% |
| ATTGCAGATAGAGTCTTTAT+CGG | - | chr4_3:35407421-35407440 | Msa0639490:CDS | 30.0% | |
| !!! | TCTTTATCGGTTACTTTTCA+TGG | - | chr4_3:35407434-35407453 | Msa0639490:CDS | 30.0% |
| !! | TCTCATTGTTGATTCTGAAT+TGG | - | chr4_3:35407463-35407482 | Msa0639490:CDS | 30.0% |
| TTACTTGGATTAAATGGTTG+TGG | - | chr4_3:35407634-35407653 | Msa0639490:CDS | 30.0% | |
| TAAATTTGGTTACAGGATGA+TGG | - | chr4_3:35407907-35407926 | Msa0639490:intron | 30.0% | |
| ACGTTCATAAATACGTTCAA+GGG | + | chr4_3:35407944-35407963 | None:intergenic | 30.0% | |
| AACGTTCATAAATACGTTCA+AGG | + | chr4_3:35407945-35407964 | None:intergenic | 30.0% | |
| TGAACGTATTTATGAACGTT+TGG | - | chr4_3:35407945-35407964 | Msa0639490:intron | 30.0% | |
| AAGTTACCAAGATGATTAGT+TGG | + | chr4_3:35408144-35408163 | None:intergenic | 30.0% | |
| GCATAATACAGACATAAAAG+GGG | + | chr4_3:35408942-35408961 | None:intergenic | 30.0% | |
| GTGCATAATACAGACATAAA+AGG | + | chr4_3:35408944-35408963 | None:intergenic | 30.0% | |
| ! | GAAGAAGTTTGAACGTATTT+TGG | - | chr4_3:35409207-35409226 | Msa0639490:CDS | 30.0% |
| AGCAATATATTCCTTCATGT+TGG | + | chr4_3:35409404-35409423 | None:intergenic | 30.0% | |
| AAGGAATATATTGCTCGATT+TGG | - | chr4_3:35409409-35409428 | Msa0639490:CDS | 30.0% | |
| GGAAAAAACACTAGCAAAAA+TGG | - | chr4_3:35409471-35409490 | Msa0639490:intron | 30.0% | |
| CAAAACTTACTTCAGAAAAC+TGG | + | chr4_3:35409585-35409604 | None:intergenic | 30.0% | |
| !!! | CAGTTTTCTGAAGTAAGTTT+TGG | - | chr4_3:35409583-35409602 | Msa0639490:intron | 30.0% |
| ! | TTTTTGTAGATGAGATTCTC+AGG | + | chr4_3:35409616-35409635 | None:intergenic | 30.0% |
| !! | ATCTACAAAAACATCGACTT+TGG | - | chr4_3:35409625-35409644 | Msa0639490:intron | 30.0% |
| !! | TCTACAAAAACATCGACTTT+GGG | - | chr4_3:35409626-35409645 | Msa0639490:intron | 30.0% |
| TTCACTCATCATAAACTGAA+GGG | + | chr4_3:35409830-35409849 | None:intergenic | 30.0% | |
| ATTCACTCATCATAAACTGA+AGG | + | chr4_3:35409831-35409850 | None:intergenic | 30.0% | |
| CTATGAAGAATTTGTCTGAT+GGG | - | chr4_3:35409926-35409945 | Msa0639490:intron | 30.0% | |
| GAAGTTCTTAGCTAGTATTA+TGG | + | chr4_3:35410354-35410373 | None:intergenic | 30.0% | |
| ATCACCACCATTGAAAAAAA+TGG | + | chr4_3:35410405-35410424 | None:intergenic | 30.0% | |
| !! | GAAGTGCTATCATTTTTGTT+TGG | - | chr4_3:35410448-35410467 | Msa0639490:CDS | 30.0% |
| TTGTTTGGATTGAGATAACT+TGG | - | chr4_3:35410463-35410482 | Msa0639490:CDS | 30.0% | |
| ! | CATCATTTAAGGTTCAGTTT+AGG | + | chr4_3:35410588-35410607 | None:intergenic | 30.0% |
| GTGATATGAAGATTTCGGAT+CGG | - | chr4_3:35406482-35406501 | Msa0639490:three_prime_UTR | 35.0% | |
| ! | ATCCTCTCTCTAGAGATATT+CGG | - | chr4_3:35406530-35406549 | Msa0639490:three_prime_UTR | 35.0% |
| !! | AGCTTAATGATTTGCCCTTT+TGG | - | chr4_3:35406996-35407015 | Msa0639490:CDS | 35.0% |
| CACTTGAGTTCTTTCTTCTT+AGG | + | chr4_3:35407062-35407081 | None:intergenic | 35.0% | |
| AAATTGGAATAGGCGAGTAA+TGG | + | chr4_3:35407292-35407311 | None:intergenic | 35.0% | |
| !!! | ACTCGCCTATTCCAATTTTT+TGG | - | chr4_3:35407294-35407313 | Msa0639490:CDS | 35.0% |
| ACAACCTACCTCCAAAAAAT+TGG | + | chr4_3:35407308-35407327 | None:intergenic | 35.0% | |
| CATGCAGTAAACGACAATTA+TGG | - | chr4_3:35407330-35407349 | Msa0639490:CDS | 35.0% | |
| TCAAAGCAAATCGCAATCAT+TGG | + | chr4_3:35407593-35407612 | None:intergenic | 35.0% | |
| ! | TGATTTTCTTCCAGACGTTA+TGG | - | chr4_3:35407610-35407629 | Msa0639490:CDS | 35.0% |
| TCATAACCTGTGATGAAGAA+AGG | - | chr4_3:35407773-35407792 | Msa0639490:intron | 35.0% | |
| TGATGAAGAAAGGTTGCAAT+TGG | - | chr4_3:35407783-35407802 | Msa0639490:intron | 35.0% | |
| ! | AAGAAGACTCGTGATTTTTC+TGG | - | chr4_3:35408048-35408067 | Msa0639490:intron | 35.0% |
| GATGAACCAACTAATCATCT+TGG | - | chr4_3:35408135-35408154 | Msa0639490:intron | 35.0% | |
| !!! | ATCACCTTGTCCTGTTTTTT+GGG | - | chr4_3:35408208-35408227 | Msa0639490:intron | 35.0% |
| !! | TTTTGGGCACACATTAGTTT+TGG | - | chr4_3:35408224-35408243 | Msa0639490:intron | 35.0% |
| ! | GCTTGTCATGTTTATGCTTT+TGG | - | chr4_3:35408336-35408355 | Msa0639490:intron | 35.0% |
| TACATGCAAATGATTGTGTC+TGG | + | chr4_3:35408741-35408760 | None:intergenic | 35.0% | |
| TGATGCAATATTTCCATGAC+TGG | - | chr4_3:35409006-35409025 | Msa0639490:intron | 35.0% | |
| ! | CAATATTTCCATGACTGGTT+GGG | - | chr4_3:35409011-35409030 | Msa0639490:intron | 35.0% |
| ! | AATATTTCCATGACTGGTTG+GGG | - | chr4_3:35409012-35409031 | Msa0639490:intron | 35.0% |
| TATTTGTGCAGACACCATTA+AGG | + | chr4_3:35409258-35409277 | None:intergenic | 35.0% | |
| AAGAAGCTGAAGATTTACAC+TGG | - | chr4_3:35409295-35409314 | Msa0639490:intron | 35.0% | |
| !! | TATATTGCTCGATTTGGTCA+TGG | - | chr4_3:35409415-35409434 | Msa0639490:CDS | 35.0% |
| !! | CTACAAAAACATCGACTTTG+GGG | - | chr4_3:35409627-35409646 | Msa0639490:intron | 35.0% |
| GATATTGAGCAATTCGAAGA+TGG | + | chr4_3:35409768-35409787 | None:intergenic | 35.0% | |
| TTTATGATGAGTGAATACCC+TGG | - | chr4_3:35409835-35409854 | Msa0639490:intron | 35.0% | |
| AAATGAGGAAGAGAAGATGA+GGG | - | chr4_3:35409858-35409877 | Msa0639490:intron | 35.0% | |
| CCATCAGACAAATTCTTCAT+AGG | + | chr4_3:35409928-35409947 | None:intergenic | 35.0% | |
| CCTATGAAGAATTTGTCTGA+TGG | - | chr4_3:35409925-35409944 | Msa0639490:intron | 35.0% | |
| ! | TATTGAGACAATTGACTCCT+TGG | - | chr4_3:35410032-35410051 | Msa0639490:intron | 35.0% |
| GATTAATGAGCCTAAAGTCA+TGG | + | chr4_3:35410101-35410120 | None:intergenic | 35.0% | |
| TGACTTTAGGCTCATTAATC+AGG | - | chr4_3:35410101-35410120 | Msa0639490:intron | 35.0% | |
| TGATCAGAAAGTGACCAAAT+GGG | - | chr4_3:35410149-35410168 | Msa0639490:intron | 35.0% | |
| AGCTGTTAGTGATGAGATAT+AGG | - | chr4_3:35410231-35410250 | Msa0639490:intron | 35.0% | |
| GCTGTTAGTGATGAGATATA+GGG | - | chr4_3:35410232-35410251 | Msa0639490:intron | 35.0% | |
| TGAGATATAGGGATAGAACT+AGG | - | chr4_3:35410243-35410262 | Msa0639490:intron | 35.0% | |
| AGATAAACCTGATGTAAGCA+AGG | + | chr4_3:35410298-35410317 | None:intergenic | 35.0% | |
| ! | AATCAGGTTTGCTTCGATAT+TGG | - | chr4_3:35410322-35410341 | Msa0639490:intron | 35.0% |
| CTTCAGTACAACCAATATCT+TGG | - | chr4_3:35410370-35410389 | Msa0639490:CDS | 35.0% | |
| AGTACAACCAATATCTTGGT+GGG | - | chr4_3:35410374-35410393 | Msa0639490:CDS | 35.0% | |
| ACCACCATTGAAAAAAATGG+AGG | + | chr4_3:35410402-35410421 | None:intergenic | 35.0% | |
| TTTGGATTGAGATAACTTGG+TGG | - | chr4_3:35410466-35410485 | Msa0639490:CDS | 35.0% | |
| TGTGGTTTGAAAGAGGAAGA+TGG | + | chr4_3:35406231-35406250 | None:intergenic | 40.0% | |
| TTAGGGTTGTGGTTTGAAAG+AGG | + | chr4_3:35406238-35406257 | None:intergenic | 40.0% | |
| AAGATAGATCTGGCCTAAGT+CGG | + | chr4_3:35406298-35406317 | None:intergenic | 40.0% | |
| TGAGAGAGAGAAGATAGATC+TGG | + | chr4_3:35406308-35406327 | None:intergenic | 40.0% | |
| TTCTTCCAAAGCAGCTGATA+AGG | - | chr4_3:35406444-35406463 | Msa0639490:three_prime_UTR | 40.0% | |
| ! | TCCTCTCTCTAGAGATATTC+GGG | - | chr4_3:35406531-35406550 | Msa0639490:three_prime_UTR | 40.0% |
| !!! | ATTTCTACCTTGGTTTTGCG+CGG | - | chr4_3:35407031-35407050 | Msa0639490:CDS | 40.0% |
| !!! | CGCCTATTCCAATTTTTTGG+AGG | - | chr4_3:35407297-35407316 | Msa0639490:CDS | 40.0% |
| CAATCATTGGTAAGAGTTCC+AGG | + | chr4_3:35407580-35407599 | None:intergenic | 40.0% | |
| TCCAGACGTTATGGTTTACT+TGG | - | chr4_3:35407619-35407638 | Msa0639490:CDS | 40.0% | |
| TCCAAGTAAACCATAACGTC+TGG | + | chr4_3:35407623-35407642 | None:intergenic | 40.0% | |
| CATTCCTATTGCAGTAAGCA+GGG | + | chr4_3:35407668-35407687 | None:intergenic | 40.0% | |
| TGCTTACTGCAATAGGAATG+CGG | - | chr4_3:35407668-35407687 | Msa0639490:CDS | 40.0% | |
| ATATCCATGTGCTCAGGAAT+CGG | + | chr4_3:35407700-35407719 | None:intergenic | 40.0% | |
| TGATGAATATCCATGTGCTC+AGG | + | chr4_3:35407706-35407725 | None:intergenic | 40.0% | |
| TGGATATTCATCACCTTAGC+AGG | - | chr4_3:35407713-35407732 | Msa0639490:intron | 40.0% | |
| GGATATTCATCACCTTAGCA+GGG | - | chr4_3:35407714-35407733 | Msa0639490:intron | 40.0% | |
| TTGCAACCTTTCTTCATCAC+AGG | + | chr4_3:35407782-35407801 | None:intergenic | 40.0% | |
| GGAGAAAGAAGCTGAAACTT+TGG | - | chr4_3:35407804-35407823 | Msa0639490:intron | 40.0% | |
| ! | ATTTGGTTACAGGATGATGG+AGG | - | chr4_3:35407910-35407929 | Msa0639490:intron | 40.0% |
| GCTGAAATCTTAGATGGTCT+TGG | - | chr4_3:35408003-35408022 | Msa0639490:intron | 40.0% | |
| ! | AAGACTCGTGATTTTTCTGG+AGG | - | chr4_3:35408051-35408070 | Msa0639490:intron | 40.0% |
| TCATCGAGTAGAAGAATGGT+GGG | + | chr4_3:35408120-35408139 | None:intergenic | 40.0% | |
| TTCATCGAGTAGAAGAATGG+TGG | + | chr4_3:35408121-35408140 | None:intergenic | 40.0% | |
| TGGTTCATCGAGTAGAAGAA+TGG | + | chr4_3:35408124-35408143 | None:intergenic | 40.0% | |
| AACAAGAGGAGTTCTTTCCA+GGG | + | chr4_3:35408172-35408191 | None:intergenic | 40.0% | |
| AAACAAGAGGAGTTCTTTCC+AGG | + | chr4_3:35408173-35408192 | None:intergenic | 40.0% | |
| !!! | CATCACCTTGTCCTGTTTTT+TGG | - | chr4_3:35408207-35408226 | Msa0639490:intron | 40.0% |
| CTAATGTGTGCCCAAAAAAC+AGG | + | chr4_3:35408221-35408240 | None:intergenic | 40.0% | |
| GCAATATTTCCATGACTGGT+TGG | - | chr4_3:35409010-35409029 | Msa0639490:intron | 40.0% | |
| CATTCCCAGGATTTCCTTAA+TGG | - | chr4_3:35409241-35409260 | Msa0639490:CDS | 40.0% | |
| GACACCATTAAGGAAATCCT+GGG | + | chr4_3:35409248-35409267 | None:intergenic | 40.0% | |
| AGACACCATTAAGGAAATCC+TGG | + | chr4_3:35409249-35409268 | None:intergenic | 40.0% | |
| TCAGCTTCTTACTTTGCATG+TGG | + | chr4_3:35409285-35409304 | None:intergenic | 40.0% | |
| GATCAATATGTTCAGACTCG+TGG | - | chr4_3:35409325-35409344 | Msa0639490:intron | 40.0% | |
| ACACTAGCAAAAATGGAACG+AGG | - | chr4_3:35409478-35409497 | Msa0639490:intron | 40.0% | |
| ACTTCAGAAAACTGGAGAAC+AGG | + | chr4_3:35409577-35409596 | None:intergenic | 40.0% | |
| !! | GGTGATTTGTTTCCTAGTGA+TGG | - | chr4_3:35409724-35409743 | Msa0639490:intron | 40.0% |
| TTTGTTTCCTAGTGATGGCA+TGG | - | chr4_3:35409729-35409748 | Msa0639490:intron | 40.0% | |
| TGCTCAATATCATCAGCACT+TGG | - | chr4_3:35409777-35409796 | Msa0639490:intron | 40.0% | |
| TCTTCTCTTCCTCATTTCCA+GGG | + | chr4_3:35409855-35409874 | None:intergenic | 40.0% | |
| ATCTTCTCTTCCTCATTTCC+AGG | + | chr4_3:35409856-35409875 | None:intergenic | 40.0% | |
| GAAATGAGGAAGAGAAGATG+AGG | - | chr4_3:35409857-35409876 | Msa0639490:intron | 40.0% | |
| ATTCTTCATAGGCATCACCT+GGG | + | chr4_3:35409917-35409936 | None:intergenic | 40.0% | |
| AATTCTTCATAGGCATCACC+TGG | + | chr4_3:35409918-35409937 | None:intergenic | 40.0% | |
| AGAGTCGAGTAATCTTTGCA+TGG | - | chr4_3:35409953-35409972 | Msa0639490:intron | 40.0% | |
| TCATCCAGAAGTAGCAATTG+AGG | + | chr4_3:35409994-35410013 | None:intergenic | 40.0% | |
| GGATGAGCCAACTAATCATT+TGG | - | chr4_3:35410008-35410027 | Msa0639490:intron | 40.0% | |
| ! | TGCTTGTTAGCCATGACTTT+AGG | - | chr4_3:35410088-35410107 | Msa0639490:intron | 40.0% |
| CTTTAGGCTCATTAATCAGG+TGG | - | chr4_3:35410104-35410123 | Msa0639490:intron | 40.0% | |
| CTGATCAGAAAGTGACCAAA+TGG | - | chr4_3:35410148-35410167 | Msa0639490:intron | 40.0% | |
| !! | GGATTTCAAGAAGCATCTGA+AGG | - | chr4_3:35410185-35410204 | Msa0639490:intron | 40.0% |
| CAGTACAACCAATATCTTGG+TGG | - | chr4_3:35410373-35410392 | Msa0639490:CDS | 40.0% | |
| !!! | GGTGCCTCCATTTTTTTCAA+TGG | - | chr4_3:35410395-35410414 | Msa0639490:CDS | 40.0% |
| !!! | GCCTCCATTTTTTTCAATGG+TGG | - | chr4_3:35410398-35410417 | Msa0639490:CDS | 40.0% |
| GTGGTGATTGTTGAGTTCAA+TGG | - | chr4_3:35410417-35410436 | Msa0639490:CDS | 40.0% | |
| TTGACCAGCAAGATGGATAA+TGG | - | chr4_3:35410557-35410576 | Msa0639490:five_prime_UTR | 40.0% | |
| TGACCAGCAAGATGGATAAT+GGG | - | chr4_3:35410558-35410577 | Msa0639490:five_prime_UTR | 40.0% | |
| ! | ATGAGTGGTGAAGTTTGGTG+TGG | + | chr4_3:35406205-35406224 | None:intergenic | 45.0% |
| GGAGTATGAGTGGTGAAGTT+TGG | + | chr4_3:35406210-35406229 | None:intergenic | 45.0% | |
| AGAGGAAGATGGAGTATGAG+TGG | + | chr4_3:35406220-35406239 | None:intergenic | 45.0% | |
| AAGGGTTGAGATTAGGGTTG+TGG | + | chr4_3:35406249-35406268 | None:intergenic | 45.0% | |
| CGAACGAAGGGTTGAGATTA+GGG | + | chr4_3:35406255-35406274 | None:intergenic | 45.0% | |
| CCTAATCTCAACCCTTCGTT+CGG | - | chr4_3:35406253-35406272 | Msa0639490:three_prime_UTR | 45.0% | |
| AAAAGATGGAGCCGAACGAA+GGG | + | chr4_3:35406267-35406286 | None:intergenic | 45.0% | |
| ! | GTTCGGCTCCATCTTTTCAT+CGG | - | chr4_3:35406270-35406289 | Msa0639490:three_prime_UTR | 45.0% |
| ! | AGTCGGTTCCGATGAAAAGA+TGG | + | chr4_3:35406281-35406300 | None:intergenic | 45.0% |
| !! | CTTTTCATCGGAACCGACTT+AGG | - | chr4_3:35406282-35406301 | Msa0639490:three_prime_UTR | 45.0% |
| TCTTCTCTCTCTCATCCCTT+AGG | - | chr4_3:35406314-35406333 | Msa0639490:three_prime_UTR | 45.0% | |
| CTTCTCTCTCTCATCCCTTA+GGG | - | chr4_3:35406315-35406334 | Msa0639490:three_prime_UTR | 45.0% | |
| AGCTTTCTTCTTGCTAGCGT+CGG | + | chr4_3:35406368-35406387 | None:intergenic | 45.0% | |
| ATTTCGGATCGGACTTGTAC+TGG | - | chr4_3:35406493-35406512 | Msa0639490:three_prime_UTR | 45.0% | |
| ! | ACCCGAATATCTCTAGAGAG+AGG | + | chr4_3:35406535-35406554 | None:intergenic | 45.0% |
| GGTTTAGTGAGTCTTGCTTC+TGG | - | chr4_3:35407128-35407147 | Msa0639490:CDS | 45.0% | |
| !! | TGCTTCTGGCTTAATGTTGC+TGG | - | chr4_3:35407142-35407161 | Msa0639490:CDS | 45.0% |
| ! | CTGGCTTAATGTTGCTGGTT+TGG | - | chr4_3:35407147-35407166 | Msa0639490:CDS | 45.0% |
| TCTACCCTGCTTACTGCAAT+AGG | - | chr4_3:35407661-35407680 | Msa0639490:CDS | 45.0% | |
| GCATTCCTATTGCAGTAAGC+AGG | + | chr4_3:35407669-35407688 | None:intergenic | 45.0% | |
| GCTTACTGCAATAGGAATGC+GGG | - | chr4_3:35407669-35407688 | Msa0639490:CDS | 45.0% | |
| AGGCTTCAATTTCCCTGCTA+AGG | + | chr4_3:35407729-35407748 | None:intergenic | 45.0% | |
| TTCCAATGCAGACATGTCAG+AGG | + | chr4_3:35407749-35407768 | None:intergenic | 45.0% | |
| ! | TTCTGCGGTTGATGCATCTA+GGG | + | chr4_3:35407974-35407993 | None:intergenic | 45.0% |
| ! | TTTCTGCGGTTGATGCATCT+AGG | + | chr4_3:35407975-35407994 | None:intergenic | 45.0% |
| ! | CGTGCTGCTGAAATCTTAGA+TGG | - | chr4_3:35407997-35408016 | Msa0639490:intron | 45.0% |
| !!! | TGGTTTTGACAAGCAGATGC+AGG | - | chr4_3:35408023-35408042 | Msa0639490:intron | 45.0% |
| !! | CTCGTGATTTTTCTGGAGGA+TGG | - | chr4_3:35408055-35408074 | Msa0639490:intron | 45.0% |
| CATCGAGTAGAAGAATGGTG+GGG | + | chr4_3:35408119-35408138 | None:intergenic | 45.0% | |
| ! | TCTTGGTAACTTCTCTTCCC+TGG | - | chr4_3:35408152-35408171 | Msa0639490:intron | 45.0% |
| TGTGCCCAAAAAACAGGACA+AGG | + | chr4_3:35408215-35408234 | None:intergenic | 45.0% | |
| CAGATTTGGAAGCTTGTGTG+TGG | - | chr4_3:35409170-35409189 | Msa0639490:CDS | 45.0% | |
| GGTTGTGATATCACATTCCC+AGG | - | chr4_3:35409228-35409247 | Msa0639490:CDS | 45.0% | |
| ACCAGATGAAGCAGTACAAG+TGG | - | chr4_3:35409362-35409381 | Msa0639490:intron | 45.0% | |
| CCAGATGAAGCAGTACAAGT+GGG | - | chr4_3:35409363-35409382 | Msa0639490:intron | 45.0% | |
| !!! | TTTTTTCCTTGCTCTGTGCC+TGG | + | chr4_3:35409459-35409478 | None:intergenic | 45.0% |
| CTAGCAAAAATGGAACGAGG+TGG | - | chr4_3:35409481-35409500 | Msa0639490:intron | 45.0% | |
| AGTATTCCGCTTCACTGATG+TGG | - | chr4_3:35409537-35409556 | Msa0639490:intron | 45.0% | |
| GTATTCCGCTTCACTGATGT+GGG | - | chr4_3:35409538-35409557 | Msa0639490:intron | 45.0% | |
| ! | GTTTTCCCACATCAGTGAAG+CGG | + | chr4_3:35409546-35409565 | None:intergenic | 45.0% |
| AGAAAACTGGAGAACAGGAG+GGG | + | chr4_3:35409572-35409591 | None:intergenic | 45.0% | |
| CAGAAAACTGGAGAACAGGA+GGG | + | chr4_3:35409573-35409592 | None:intergenic | 45.0% | |
| TCAGAAAACTGGAGAACAGG+AGG | + | chr4_3:35409574-35409593 | None:intergenic | 45.0% | |
| ! | TTGGGGTTGACTTAGACTCT+AGG | - | chr4_3:35409644-35409663 | Msa0639490:intron | 45.0% |
| !! | CTTAGACTCTAGGATTGCTC+TGG | - | chr4_3:35409654-35409673 | Msa0639490:intron | 45.0% |
| ATTGCTCTGGTTGGACCAAA+TGG | - | chr4_3:35409667-35409686 | Msa0639490:intron | 45.0% | |
| GTACTCTTTCCAGCACCATT+TGG | + | chr4_3:35409685-35409704 | None:intergenic | 45.0% | |
| ACACTGCTGAAGCTAATGAC+AGG | - | chr4_3:35409703-35409722 | Msa0639490:intron | 45.0% | |
| TCAGCACTTGGCTGAGAAAT+TGG | - | chr4_3:35409789-35409808 | Msa0639490:intron | 45.0% | |
| CTTGGCTGAGAAATTGGACT+TGG | - | chr4_3:35409795-35409814 | Msa0639490:intron | 45.0% | |
| CTCATCATAAACTGAAGGGC+AGG | + | chr4_3:35409826-35409845 | None:intergenic | 45.0% | |
| GAGTGAATACCCTGGAAATG+AGG | - | chr4_3:35409843-35409862 | Msa0639490:intron | 45.0% | |
| AGAAGATGAGGGCTGCTATT+GGG | - | chr4_3:35409869-35409888 | Msa0639490:intron | 45.0% | |
| ! | ACAGCCTCAATTGCTACTTC+TGG | - | chr4_3:35409987-35410006 | Msa0639490:intron | 45.0% |
| ATCCCACTCATTCAATGCCT+CGG | + | chr4_3:35410058-35410077 | None:intergenic | 45.0% | |
| TCAGAAAGTGACCAAATGGG+AGG | - | chr4_3:35410152-35410171 | Msa0639490:intron | 45.0% | |
| CAGAAAGTGACCAAATGGGA+GGG | - | chr4_3:35410153-35410172 | Msa0639490:intron | 45.0% | |
| CATAATGTCACCCTCCCATT+TGG | + | chr4_3:35410166-35410185 | None:intergenic | 45.0% | |
| CAAATGGGAGGGTGACATTA+TGG | - | chr4_3:35410164-35410183 | Msa0639490:intron | 45.0% | |
| CAAGGCCATAAGTCTCCAAA+GGG | + | chr4_3:35410280-35410299 | None:intergenic | 45.0% | |
| ! | CTTATGGCCTTGCTTACATC+AGG | - | chr4_3:35410288-35410307 | Msa0639490:intron | 45.0% |
| GTTGAGTTCAATGGCAGAGT+CGG | - | chr4_3:35410426-35410445 | Msa0639490:CDS | 45.0% | |
| ! | TTGGTTCTTGACCAGCAAGA+TGG | - | chr4_3:35410550-35410569 | Msa0639490:five_prime_UTR | 45.0% |
| TGTCCCATTATCCATCTTGC+TGG | + | chr4_3:35410564-35410583 | None:intergenic | 45.0% | |
| !!! | AGTTTATTTATTTATTTTTA+TGG | - | chr4_3:35407869-35407888 | Msa0639490:intron | 5.0% |
| CCGAACGAAGGGTTGAGATT+AGG | + | chr4_3:35406256-35406275 | None:intergenic | 50.0% | |
| GAAAAGATGGAGCCGAACGA+AGG | + | chr4_3:35406268-35406287 | None:intergenic | 50.0% | |
| !! | AGCTGCTTTGGAAGAAGCAG+CGG | + | chr4_3:35406440-35406459 | None:intergenic | 50.0% |
| AGCGACCTTATCAGCTGCTT+TGG | + | chr4_3:35406452-35406471 | None:intergenic | 50.0% | |
| TGTTAGCATGGGTGCATGTG+TGG | - | chr4_3:35407194-35407213 | Msa0639490:CDS | 50.0% | |
| GTTAGCATGGGTGCATGTGT+GGG | - | chr4_3:35407195-35407214 | Msa0639490:CDS | 50.0% | |
| ATGCTACGTACCCATCAGCT+CGG | + | chr4_3:35407242-35407261 | None:intergenic | 50.0% | |
| ! | AGCTGATGGGTACGTAGCAT+GGG | - | chr4_3:35407242-35407261 | Msa0639490:CDS | 50.0% |
| ACTTCCGATTCCTGAGCACA+TGG | - | chr4_3:35407693-35407712 | Msa0639490:CDS | 50.0% | |
| AGCCTCTGACATGTCTGCAT+TGG | - | chr4_3:35407744-35407763 | Msa0639490:intron | 50.0% | |
| AGCTGAAACTTTGGCTGCTC+AGG | - | chr4_3:35407813-35407832 | Msa0639490:intron | 50.0% | |
| !! | TGGTTACAGGATGATGGAGG+TGG | - | chr4_3:35407913-35407932 | Msa0639490:intron | 50.0% |
| ! | TTCAGCAGCACGCTTTTCTG+CGG | + | chr4_3:35407989-35408008 | None:intergenic | 50.0% |
| GAAACATCCCCAACCAGTCA+TGG | + | chr4_3:35409022-35409041 | None:intergenic | 50.0% | |
| TGTTCAGACTCGTGGTGACT+TGG | - | chr4_3:35409333-35409352 | Msa0639490:intron | 50.0% | |
| CCCACTTGTACTGCTTCATC+TGG | + | chr4_3:35409366-35409385 | None:intergenic | 50.0% | |
| GAAGCAGTACAAGTGGGAAC+AGG | - | chr4_3:35409369-35409388 | Msa0639490:intron | 50.0% | |
| GGAGCAGATTGCCAACATGA+AGG | - | chr4_3:35409390-35409409 | Msa0639490:intron | 50.0% | |
| TTCAGCAAAACTAGCTCGCC+AGG | - | chr4_3:35409438-35409457 | Msa0639490:CDS | 50.0% | |
| AAAACTGGAGAACAGGAGGG+GGG | + | chr4_3:35409570-35409589 | None:intergenic | 50.0% | |
| GAAAACTGGAGAACAGGAGG+GGG | + | chr4_3:35409571-35409590 | None:intergenic | 50.0% | |
| !! | GACTCTAGGATTGCTCTGGT+TGG | - | chr4_3:35409658-35409677 | Msa0639490:intron | 50.0% |
| GAGAAGATGAGGGCTGCTAT+TGG | - | chr4_3:35409868-35409887 | Msa0639490:intron | 50.0% | |
| ATTGGGAGGTTTGGACTGAC+AGG | - | chr4_3:35409886-35409905 | Msa0639490:intron | 50.0% | |
| !! | GAGGCATTGAATGAGTGGGA+TGG | - | chr4_3:35410057-35410076 | Msa0639490:intron | 50.0% |
| GCATTGAATGAGTGGGATGG+CGG | - | chr4_3:35410060-35410079 | Msa0639490:intron | 50.0% | |
| ATCAGGTGGCGCATGAGATA+TGG | - | chr4_3:35410118-35410137 | Msa0639490:intron | 50.0% | |
| TCAGGTGGCGCATGAGATAT+GGG | - | chr4_3:35410119-35410138 | Msa0639490:intron | 50.0% | |
| !! | CAAGAAGCATCTGAAGGCGA+AGG | - | chr4_3:35410191-35410210 | Msa0639490:intron | 50.0% |
| CATAAGTCTCCAAAGGGTGG+TGG | + | chr4_3:35410274-35410293 | None:intergenic | 50.0% | |
| ! | CACCACCCTTTGGAGACTTA+TGG | - | chr4_3:35410272-35410291 | Msa0639490:intron | 50.0% |
| GCAAGGCCATAAGTCTCCAA+AGG | + | chr4_3:35410281-35410300 | None:intergenic | 50.0% | |
| CTTACCACCACGTTTAGCGG+CGG | + | chr4_3:35406410-35406429 | None:intergenic | 55.0% | |
| GGCCTTACCACCACGTTTAG+CGG | + | chr4_3:35406413-35406432 | None:intergenic | 55.0% | |
| TTTGGAAGAAGCAGCGGCTG+CGG | + | chr4_3:35406434-35406453 | None:intergenic | 55.0% | |
| GGTTGAACCGCGCAAAACCA+AGG | + | chr4_3:35407041-35407060 | None:intergenic | 55.0% | |
| ! | GAGCTGATGGGTACGTAGCA+TGG | - | chr4_3:35407241-35407260 | Msa0639490:CDS | 55.0% |
| ! | ACGAGGTGGACTCACAGAGA+AGG | - | chr4_3:35409495-35409514 | Msa0639490:intron | 55.0% |
| CTGGTTGGACCAAATGGTGC+TGG | - | chr4_3:35409673-35409692 | Msa0639490:intron | 55.0% | |
| CGCTTGACCATGCCATCACT+AGG | + | chr4_3:35409739-35409758 | None:intergenic | 55.0% | |
| AGATGAGGGCTGCTATTGGG+AGG | - | chr4_3:35409872-35409891 | Msa0639490:intron | 55.0% | |
| AGGGCTGCTATTGGGAGGTT+TGG | - | chr4_3:35409877-35409896 | Msa0639490:intron | 55.0% | |
| TGGACTGACAGGTAAAGCCC+AGG | - | chr4_3:35409897-35409916 | Msa0639490:intron | 55.0% | |
| ! | GACAATTGACTCCTTGGCCG+AGG | - | chr4_3:35410038-35410057 | Msa0639490:intron | 55.0% |
| CTCATTCAATGCCTCGGCCA+AGG | + | chr4_3:35410052-35410071 | None:intergenic | 55.0% | |
| !! | TGGCCGAGGCATTGAATGAG+TGG | - | chr4_3:35410052-35410071 | Msa0639490:intron | 55.0% |
| !! | GGCCGAGGCATTGAATGAGT+GGG | - | chr4_3:35410053-35410072 | Msa0639490:intron | 55.0% |
| ! | GAAGCATCTGAAGGCGAAGG+CGG | - | chr4_3:35410194-35410213 | Msa0639490:intron | 55.0% |
| AAGCATCTGAAGGCGAAGGC+GGG | - | chr4_3:35410195-35410214 | Msa0639490:intron | 55.0% | |
| TAGGCCAAACCACCACCCTT+TGG | - | chr4_3:35410262-35410281 | Msa0639490:intron | 55.0% | |
| ! | GTCTCCAAAGGGTGGTGGTT+TGG | + | chr4_3:35410269-35410288 | None:intergenic | 55.0% |
| GGCCATAAGTCTCCAAAGGG+TGG | + | chr4_3:35410277-35410296 | None:intergenic | 55.0% | |
| !! | GGAGGCACCCACCAAGATAT+TGG | + | chr4_3:35410384-35410403 | None:intergenic | 55.0% |
| CGCCGCTAAACGTGGTGGTA+AGG | - | chr4_3:35406408-35406427 | Msa0639490:three_prime_UTR | 60.0% | |
| TGAGCGTCTAGCCGAGCTGA+TGG | - | chr4_3:35407228-35407247 | Msa0639490:CDS | 60.0% | |
| GAGCGTCTAGCCGAGCTGAT+GGG | - | chr4_3:35407229-35407248 | Msa0639490:CDS | 60.0% | |
| ! | GAATGAGTGGGATGGCGGCA+TGG | - | chr4_3:35410065-35410084 | Msa0639490:intron | 60.0% |
| AGCATCTGAAGGCGAAGGCG+GGG | - | chr4_3:35410196-35410215 | Msa0639490:intron | 60.0% | |
| GAAGGCGAAGGCGGGGATAT+TGG | - | chr4_3:35410203-35410222 | Msa0639490:intron | 60.0% | |
| ACCACCACGTTTAGCGGCGG+CGG | + | chr4_3:35406407-35406426 | None:intergenic | 65.0% | |
| AGCTCGCCAGGCACAGAGCA+AGG | - | chr4_3:35409450-35409469 | Msa0639490:intron | 65.0% | |
| ACCACGTTTAGCGGCGGCGG+CGG | + | chr4_3:35406404-35406423 | None:intergenic | 70.0% | |
| GCCGCCGCCGCTAAACGTGG+TGG | - | chr4_3:35406403-35406422 | Msa0639490:three_prime_UTR | 75.0% | |
| ! | GCCGCCGCCGCCGCTAAACG+TGG | - | chr4_3:35406400-35406419 | Msa0639490:three_prime_UTR | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 35406179 | 35410716 | 35406179 | ID=Msa0639490;Name=Msa0639490 |
| chr4_3 | mRNA | 35406179 | 35410716 | 35406179 | ID=Msa0639490-mRNA-1;Parent=Msa0639490;Name=Msa0639490-mRNA-1;_AED=0.04;_eAED=0.04;_QI=179|1|1|1|1|1|5|486|590 |
| chr4_3 | exon | 35406179 | 35407722 | 35406179 | ID=Msa0639490-mRNA-1:exon:8306;Parent=Msa0639490-mRNA-1 |
| chr4_3 | exon | 35408739 | 35408973 | 35408739 | ID=Msa0639490-mRNA-1:exon:8305;Parent=Msa0639490-mRNA-1 |
| chr4_3 | exon | 35409061 | 35409271 | 35409061 | ID=Msa0639490-mRNA-1:exon:8304;Parent=Msa0639490-mRNA-1 |
| chr4_3 | exon | 35409394 | 35409467 | 35409394 | ID=Msa0639490-mRNA-1:exon:8303;Parent=Msa0639490-mRNA-1 |
| chr4_3 | exon | 35410343 | 35410716 | 35410343 | ID=Msa0639490-mRNA-1:exon:8302;Parent=Msa0639490-mRNA-1 |
| chr4_3 | five_prime_UTR | 35410538 | 35410716 | 35410538 | ID=Msa0639490-mRNA-1:five_prime_utr;Parent=Msa0639490-mRNA-1 |
| chr4_3 | CDS | 35410343 | 35410537 | 35410343 | ID=Msa0639490-mRNA-1:cds;Parent=Msa0639490-mRNA-1 |
| chr4_3 | CDS | 35409394 | 35409467 | 35409394 | ID=Msa0639490-mRNA-1:cds;Parent=Msa0639490-mRNA-1 |
| chr4_3 | CDS | 35409061 | 35409271 | 35409061 | ID=Msa0639490-mRNA-1:cds;Parent=Msa0639490-mRNA-1 |
| chr4_3 | CDS | 35408739 | 35408973 | 35408739 | ID=Msa0639490-mRNA-1:cds;Parent=Msa0639490-mRNA-1 |
| chr4_3 | CDS | 35406665 | 35407722 | 35406665 | ID=Msa0639490-mRNA-1:cds;Parent=Msa0639490-mRNA-1 |
| chr4_3 | three_prime_UTR | 35406179 | 35406664 | 35406179 | ID=Msa0639490-mRNA-1:three_prime_utr;Parent=Msa0639490-mRNA-1 |
| Gene Sequence |
| Protein sequence |
