AlfalfaGEDB | Msa0639490

M. sativa cultivar zhongmu-4 / Msa0639490

KEGG: K06185
GO: GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
PFAM: PF00005.30

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0639490	XP_013455966.1	99.831	590	1	0	1	590	1	590	0.0	1221

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0639490	sp\|Q9FJH6\|AB1F_ARATH	84.588	558	86	0	33	590	38	595	0.0	1009

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0639490	A0A072UJY1	99.831	590	1	0	1	590	1	590	0.0	1221

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0007850	Msa0639490	0.845483	3.949893e-59	-8.615850e-47
Msa0056270	Msa0639490	0.843382	1.449924e-58	-8.615850e-47
Msa0126840	Msa0639490	0.815950	7.108276e-52	-8.615850e-47
Msa0127040	Msa0639490	0.808219	3.448691e-50	-8.615850e-47
Msa0244970	Msa0639490	0.804485	2.112302e-49	-8.615850e-47
Msa0244980	Msa0639490	0.811140	8.123805e-51	-8.615850e-47
Msa0295250	Msa0639490	0.821254	4.451344e-53	-8.615850e-47
Msa0437020	Msa0639490	0.829399	5.260330e-55	-8.615850e-47
Msa0468490	Msa0639490	0.823079	1.680311e-53	-8.615850e-47
Msa0546690	Msa0639490	0.846879	1.645509e-59	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0639490	MtrunA17_Chr4g0028471	99.831	590	1	0	1	590	1	590	0.0	1221
Msa0639490	MtrunA17_Chr2g0327291	89.322	590	63	0	1	590	1	590	0.0	1082
Msa0639490	MtrunA17_Chr3g0119921	43.382	544	283	6	62	584	173	712	7.66e-156	464
Msa0639490	MtrunA17_Chr7g0220881	40.179	560	290	6	62	582	152	705	6.65e-144	433
Msa0639490	MtrunA17_Chr8g0371361	41.547	556	286	8	62	582	152	703	1.71e-143	432
Msa0639490	MtrunA17_Chr1g0181461	41.667	552	285	9	66	582	2	551	2.18e-141	421
Msa0639490	MtrunA17_Chr3g0129301	29.202	589	386	9	11	574	50	632	4.19e-70	239
Msa0639490	MtrunA17_Chr3g0129301	26.316	247	149	4	64	306	433	650	1.45e-19	92.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0639490	AT5G60790.1	84.588	558	86	0	33	590	38	595	0.0	1009
Msa0639490	AT1G64550.1	44.404	545	277	6	62	584	173	713	4.05e-158	470
Msa0639490	AT3G54540.2	42.602	561	276	9	62	583	161	714	3.74e-152	455
Msa0639490	AT3G54540.1	42.602	561	276	9	62	583	161	714	3.74e-152	455
Msa0639490	AT5G64840.1	31.079	547	354	8	60	586	94	637	6.26e-75	252
Msa0639490	AT5G09930.1	31.047	554	353	8	46	578	69	614	1.53e-73	248
Msa0639490	AT5G09930.1	25.726	241	134	7	64	294	411	616	1.80e-15	80.5
Msa0639490	AT3G28860.1	28.856	201	128	6	81	276	1030	1220	1.98e-11	67.8
Msa0639490	AT1G28010.1	30.342	234	123	8	375	581	1006	1226	8.38e-11	65.9

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Find 209 sgRNAs with CRISPR-Local

Find 321 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTGGAGAACAGGAGGG+GGG	0.666914	4_3:+35407306	None:intergenic
AAAAGATGGAGCCGAACGAA+GGG	0.584128	4_3:+35410609	None:intergenic
AAATGAGGAAGAGAAGATGA+GGG	0.639167	4_3:-35407015	Msa0639490:CDS
AAATTCAAACACAAACCCTA+AGG	0.542306	4_3:+35410543	None:intergenic
AACGTTCATAAATACGTTCA+AGG	0.466725	4_3:+35408931	None:intergenic
AAGAAGCTGAAGATTTACAC+TGG	0.638565	4_3:-35407578	Msa0639490:CDS
AAGATAGATCTGGCCTAAGT+CGG	0.568371	4_3:+35410578	None:intergenic
AAGCATCTGAAGGCGAAGGC+GGG	0.478821	4_3:-35406678	Msa0639490:CDS
AAGGAATATATTGCTCGATT+TGG	0.324399	4_3:-35407464	Msa0639490:CDS
AAGGGTTGAGATTAGGGTTG+TGG	0.409947	4_3:+35410627	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATTCAAACACAAACCCTAA+GGG	+	chr4_3:35406332-35406351	None:intergenic	30.0%
AAATTCAAACACAAACCCTA+AGG	+	chr4_3:35406333-35406352	None:intergenic	30.0%
TTGTGTTTGAATTTCGAAGA+TGG	-	chr4_3:35406339-35406358	Msa0639490:three_prime_UTR	30.0%
TTGATATATGATTGAATCGG+TGG	-	chr4_3:35406886-35406905	Msa0639490:CDS	30.0%
TAATGGTTACATTCACAACA+TGG	+	chr4_3:35407275-35407294	None:intergenic	30.0%
TACCTCCAAAAAATTGGAAT+AGG	+	chr4_3:35407302-35407321	None:intergenic	30.0%
ATTGCAGATAGAGTCTTTAT+CGG	-	chr4_3:35407421-35407440	Msa0639490:CDS	30.0%
TTACTTGGATTAAATGGTTG+TGG	-	chr4_3:35407634-35407653	Msa0639490:CDS	30.0%
TAAATTTGGTTACAGGATGA+TGG	-	chr4_3:35407907-35407926	Msa0639490:intron	30.0%
ACGTTCATAAATACGTTCAA+GGG	+	chr4_3:35407944-35407963	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_3	gene	35406179	35410716	35406179	ID=Msa0639490;Name=Msa0639490
chr4_3	mRNA	35406179	35410716	35406179	ID=Msa0639490-mRNA-1;Parent=Msa0639490;Name=Msa0639490-mRNA-1;_AED=0.04;_eAED=0.04;_QI=179\|1\|1\|1\|1\|1\|5\|486\|590
chr4_3	exon	35406179	35407722	35406179	ID=Msa0639490-mRNA-1:exon:8306;Parent=Msa0639490-mRNA-1
chr4_3	exon	35408739	35408973	35408739	ID=Msa0639490-mRNA-1:exon:8305;Parent=Msa0639490-mRNA-1
chr4_3	exon	35409061	35409271	35409061	ID=Msa0639490-mRNA-1:exon:8304;Parent=Msa0639490-mRNA-1
chr4_3	exon	35409394	35409467	35409394	ID=Msa0639490-mRNA-1:exon:8303;Parent=Msa0639490-mRNA-1
chr4_3	exon	35410343	35410716	35410343	ID=Msa0639490-mRNA-1:exon:8302;Parent=Msa0639490-mRNA-1
chr4_3	five_prime_UTR	35410538	35410716	35410538	ID=Msa0639490-mRNA-1:five_prime_utr;Parent=Msa0639490-mRNA-1
chr4_3	CDS	35410343	35410537	35410343	ID=Msa0639490-mRNA-1:cds;Parent=Msa0639490-mRNA-1
chr4_3	CDS	35409394	35409467	35409394	ID=Msa0639490-mRNA-1:cds;Parent=Msa0639490-mRNA-1
chr4_3	CDS	35409061	35409271	35409061	ID=Msa0639490-mRNA-1:cds;Parent=Msa0639490-mRNA-1
chr4_3	CDS	35408739	35408973	35408739	ID=Msa0639490-mRNA-1:cds;Parent=Msa0639490-mRNA-1
chr4_3	CDS	35406665	35407722	35406665	ID=Msa0639490-mRNA-1:cds;Parent=Msa0639490-mRNA-1
chr4_3	three_prime_UTR	35406179	35406664	35406179	ID=Msa0639490-mRNA-1:three_prime_utr;Parent=Msa0639490-mRNA-1

Gene Sequence

>Msa0639490

ATGGTTTCCGACGCTAGCAAGAAGAAAGCTGCACAGAAGAAAGCCGCCGCCGCCGCTAAACGTGGTGGTAAGGCCGCAGCCGCTGCTTCTTCCAAAGCAGCTGATAAGGTCGCTGATAAAATCAGTGATATGAAGATTTCGGATCGGACTTGTACTGGTGTTCTTTGTTCTCATCCTCTCTCTAGAGATATTCGGATAGAGTCTTTATCGGTTACTTTTCATGGACATGATCTCATTGTTGATTCTGAATTGGAGTTAAATTATGGAAGACGTTATGGTTTACTTGGATTAAATGGTTGTGGAAAGTCTACCCTGCTTACTGCAATAGGAATGCGGGAACTTCCGATTCCTGAGCACATGGATATTCATCACCTTAGCAGGGAAATTGAAGCCTCTGACATGTCTGCATTGGAAGCTGTCATAACCTGTGATGAAGAAAGGTTGCAATTGGAGAAAGAAGCTGAAACTTTGGCTGCTCAGGATGATGGAGGTGGTGAAGCCCTTGAACGTATTTATGAACGTTTGGACGCCCTAGATGCATCAACCGCAGAAAAGCGTGCTGCTGAAATCTTAGATGGTCTTGGTTTTGACAAGCAGATGCAGGCAAAGAAGACTCGTGATTTTTCTGGAGGATGGAGAATGAGAATTTCATTAGCACGAGCTTTATTTATGAACCCCACCATTCTTCTACTCGATGAACCAACTAATCATCTTGATTTGGAAGCTTGTGTGTGGCTCGAAGAGAGTTTGAAGAAGTTTGAACGTATTTTGGTTGTGATATCACATTCCCAGGATTTCCTTAATGGTGTCTGCACAAATATTATCCACATGCAAAGTAAGAAGCTGAAGATTTACACTGGCAACTATGATCAATATGTTCAGACTCGTGGTGACTTGGAAGAGAACCAGATGAAGCAGTACAAGTGGGAACAGGAGCAGATTGCCAACATGAAGGAATATATTGCTCGATTTGGTCATGGTTCAGCAAAACTAGCTCGCCAGGCACAGAGCAAGGAAAAAACACTAGCAAAAATGGAACGAGGTGGACTCACAGAGAAGGTAGTCAGAGATCAAGTTTTAGTATTCCGCTTCACTGATGTGGGAAAACTCCCCCCTCCTGTTCTCCAGTTTTCTGAAGTAAGTTTTGGTTACACTCCTGAGAATCTCATCTACAAAAACATCGACTTTGGGGTTGACTTAGACTCTAGGATTGCTCTGGTTGGACCAAATGGTGCTGGAAAGAGTACACTGCTGAAGCTAATGACAGGTGATTTGTTTCCTAGTGATGGCATGGTCAAGCGTCATAACCATCTTCGAATTGCTCAATATCATCAGCACTTGGCTGAGAAATTGGACTTGGATGTGCCTGCCCTTCAGTTTATGATGAGTGAATACCCTGGAAATGAGGAAGAGAAGATGAGGGCTGCTATTGGGAGGTTTGGACTGACAGGTAAAGCCCAGGTGATGCCTATGAAGAATTTGTCTGATGGGCAAAAGAGTCGAGTAATCTTTGCATGGTTAGCTTATAGACAGCCTCAATTGCTACTTCTGGATGAGCCAACTAATCATTTGGATATTGAGACAATTGACTCCTTGGCCGAGGCATTGAATGAGTGGGATGGCGGCATGGTGCTTGTTAGCCATGACTTTAGGCTCATTAATCAGGTGGCGCATGAGATATGGGTGTGTGCTGATCAGAAAGTGACCAAATGGGAGGGTGACATTATGGATTTCAAGAAGCATCTGAAGGCGAAGGCGGGGATATTGGACTGA

Protein sequence

>Msa0639490

MVSDASKKKAAQKKAAAAAKRGGKAAAAASSKAADKVADKISDMKISDRTCTGVLCSHPLSRDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGMRELPIPEHMDIHHLSREIEASDMSALEAVITCDEERLQLEKEAETLAAQDDGGGEALERIYERLDALDASTAEKRAAEILDGLGFDKQMQAKKTRDFSGGWRMRISLARALFMNPTILLLDEPTNHLDLEACVWLEESLKKFERILVVISHSQDFLNGVCTNIIHMQSKKLKIYTGNYDQYVQTRGDLEENQMKQYKWEQEQIANMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVVRDQVLVFRFTDVGKLPPPVLQFSEVSFGYTPENLIYKNIDFGVDLDSRIALVGPNGAGKSTLLKLMTGDLFPSDGMVKRHNHLRIAQYHQHLAEKLDLDVPALQFMMSEYPGNEEEKMRAAIGRFGLTGKAQVMPMKNLSDGQKSRVIFAWLAYRQPQLLLLDEPTNHLDIETIDSLAEALNEWDGGMVLVSHDFRLINQVAHEIWVCADQKVTKWEGDIMDFKKHLKAKAGILD*