AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0913240


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0913240 MtrunA17_Chr6g0466891 93.750 224 10 1 1 224 1 220 9.43e-136 380
Msa0913240 MtrunA17_Chr1g0201251 75.113 221 49 3 6 224 5 221 8.26e-113 322
Msa0913240 MtrunA17_Chr3g0090241 81.538 130 23 1 6 134 5 134 4.67e-77 229
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0913240 AT2G30060.1 67.980 203 62 3 6 206 11 212 2.84e-92 270
Msa0913240 AT5G58590.1 72.674 172 46 1 8 178 10 181 1.66e-90 265
Msa0913240 AT1G07140.1 72.254 173 47 1 6 177 9 181 8.57e-89 261

Find 75 sgRNAs with CRISPR-Local

Find 178 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTGCTTTCCTCTTTATTC+AGG 0.146603 6_2:+23705576 None:intergenic
GAGAGAGTGAAGGGGTTAAT+AGG 0.156539 6_2:+23708025 None:intergenic
AGAGAGTGAAGGGGTTAATA+GGG 0.238930 6_2:+23708026 None:intergenic
TTAGAGAGAGAAAGTGATAA+AGG 0.250963 6_2:+23707993 None:intergenic
ATCATTGAGATTGGCGCTTT+TGG 0.269745 6_2:-23705184 Msa0913240:three_prime_UTR
ATTCATAACTTGAAATTTGC+TGG 0.303386 6_2:-23704915 Msa0913240:three_prime_UTR
CTTCAACGCTCAAATTCTTA+AGG 0.306134 6_2:+23705531 None:intergenic
CTCTCATAGTCCTAGTCTTC+AGG 0.314034 6_2:-23705290 Msa0913240:three_prime_UTR
GTTAGATTGCAGAAAGTTCA+TGG 0.327146 6_2:-23705624 Msa0913240:intron
GTTGGTTTGGTGTAGGGATG+GGG 0.368624 6_2:-23705101 Msa0913240:three_prime_UTR
CTTGCTTTCCTCTTTATTCA+GGG 0.373773 6_2:+23705577 None:intergenic
TGTTGGTTTGGTGTAGGGAT+GGG 0.374621 6_2:-23705102 Msa0913240:three_prime_UTR
TAGAGAGAGAAAGTGATAAA+GGG 0.378430 6_2:+23707994 None:intergenic
CGGGTTTGAATCATTGAGAT+TGG 0.383808 6_2:-23705193 Msa0913240:three_prime_UTR
CTTAAGAATTTGAGCGTTGA+AGG 0.385239 6_2:-23705530 Msa0913240:CDS
CGCTCCGATCATCCAACTTC+AGG 0.394565 6_2:-23707892 Msa0913240:CDS
GATTCCCTTCCTTGTCAAAT+CGG 0.395157 6_2:+23707292 None:intergenic
ATAAGGTTACTGGAAAAGTT+AGG 0.398775 6_2:-23707227 Msa0913240:CDS
CAAGGCAATATGGCAAAGTT+TGG 0.402268 6_2:-23705345 Msa0913240:three_prime_UTR
TATGATGTGACTGAACAAAA+TGG 0.406490 6_2:-23704884 Msa0913240:three_prime_UTR
GGTTTGGTGTAGGGATGGGG+AGG 0.424673 6_2:-23705098 Msa0913240:three_prime_UTR
TGAGGCGTCGTCATCAAAAT+CGG 0.443575 6_2:+23704939 None:intergenic
GGAATGAGAAATCTTGTGTT+TGG 0.452376 6_2:-23706737 Msa0913240:CDS
TTGAACAAGTCATGTTGGTT+TGG 0.462502 6_2:-23705114 Msa0913240:three_prime_UTR
GGCAATATGGCAAAGTTTGG+TGG 0.471716 6_2:-23705342 Msa0913240:three_prime_UTR
ATGTTGGTTTGGTGTAGGGA+TGG 0.478068 6_2:-23705103 Msa0913240:three_prime_UTR
TGAATTATTGTCAGCAAGGT+TGG 0.479133 6_2:-23705225 Msa0913240:three_prime_UTR
TGCTGAATCCCTGAATAAAG+AGG 0.481374 6_2:-23705585 Msa0913240:CDS
CAATGGAAGGAACGAGGAGC+AGG 0.488564 6_2:-23707270 Msa0913240:CDS
CAGGAAGTCGCTGTTTCCAC+TGG 0.489504 6_2:-23707873 Msa0913240:CDS
TTGACAAGGAAGGGAATCAA+TGG 0.490090 6_2:-23707287 Msa0913240:CDS
ATCTTCCTCTTCGTGATGAT+CGG 0.492706 6_2:+23707953 None:intergenic
GTTTCTAGAGAGAGAGTGAA+GGG 0.499952 6_2:+23708016 None:intergenic
AAGTCATGTTGGTTTGGTGT+AGG 0.503712 6_2:-23705108 Msa0913240:three_prime_UTR
GCCGGTGTCTTCTTCATCGC+CGG 0.504644 6_2:+23707923 None:intergenic
AGGGATGGGGAGGGTGCAGT+CGG 0.505751 6_2:-23705088 Msa0913240:three_prime_UTR
TCAGTACTCACTGAGATGAT+TGG 0.506426 6_2:+23707167 None:intergenic
GAAAACCGAGGAGAAAACTA+AGG 0.512105 6_2:-23705465 Msa0913240:CDS
AAACAGCGACTTCCTGAAGT+TGG 0.523327 6_2:+23707880 None:intergenic
ATGACTGTGCAAGAGCATGC+TGG 0.525554 6_2:-23706759 Msa0913240:CDS
GTGTCTTCTTCATCGCCGGC+GGG 0.532371 6_2:+23707927 None:intergenic
GAAAAGAAAGTCGAAGAGCC+TGG 0.535131 6_2:-23705404 Msa0913240:CDS
GGGATGGGGAGGGTGCAGTC+GGG 0.540876 6_2:-23705087 Msa0913240:three_prime_UTR
TTCTTCATCTTCTTCACCAG+TGG 0.541787 6_2:+23707857 None:intergenic
AGTCATGTTGGTTTGGTGTA+GGG 0.550275 6_2:-23705107 Msa0913240:three_prime_UTR
GTTTGGTGTAGGGATGGGGA+GGG 0.550590 6_2:-23705097 Msa0913240:three_prime_UTR
TTAAGAATTTGAGCGTTGAA+GGG 0.557314 6_2:-23705529 Msa0913240:CDS
ATCTTGTGTTTGGCACGCGA+AGG 0.558670 6_2:-23706727 Msa0913240:CDS
TTGTTGAATTATTGTCAGCA+AGG 0.560394 6_2:-23705229 Msa0913240:three_prime_UTR
CTGTACCGATTTGACAAGGA+AGG 0.562348 6_2:-23707297 Msa0913240:CDS
GGTGTCTTCTTCATCGCCGG+CGG 0.563701 6_2:+23707926 None:intergenic
TGACTGTGCAAGAGCATGCT+GGG 0.564943 6_2:-23706758 Msa0913240:CDS
CATAATCAAGCAGATGAACC+AGG 0.570119 6_2:+23705386 None:intergenic
ACTTCCTGAAGTTGGATGAT+CGG 0.579113 6_2:+23707888 None:intergenic
GATCGGAGCGATTTGAGCGC+CGG 0.581625 6_2:+23707905 None:intergenic
CCTGAATAAAGAGGAAAGCA+AGG 0.588948 6_2:-23705576 Msa0913240:CDS
CTTAAGGAGATCAGCAGCAG+TGG 0.591678 6_2:+23705547 None:intergenic
GGTTTCTAGAGAGAGAGTGA+AGG 0.610248 6_2:+23708015 None:intergenic
CACGCGAAGGACTTTGCTGA+TGG 0.615394 6_2:-23706714 Msa0913240:CDS
TGCTGACAATAATTCAACAA+AGG 0.622003 6_2:+23705232 None:intergenic
AATTTCAAGTTATGAATCTG+AGG 0.624425 6_2:+23704921 None:intergenic
GAAAGACGAAGAGAAATCTG+AGG 0.628935 6_2:-23705489 Msa0913240:CDS
TTTCTAGAGAGAGAGTGAAG+GGG 0.635471 6_2:+23708017 None:intergenic
CAAGGAAGGGAATCAATGGA+AGG 0.636394 6_2:-23707283 Msa0913240:CDS
TTTGTTGCTACGTTATTGAG+TGG 0.649884 6_2:-23705262 Msa0913240:three_prime_UTR
TGTACCGATTTGACAAGGAA+GGG 0.657438 6_2:-23707296 Msa0913240:CDS
TGAGAGAGTATTGATAAGAG+TGG 0.665618 6_2:+23705307 None:intergenic
GAAGAGGAAGATGTTCCCGC+CGG 0.668991 6_2:-23707942 Msa0913240:CDS
AAGCACCGATCATCACGAAG+AGG 0.672214 6_2:-23707958 Msa0913240:CDS
GTAGAAGTAAGTACAAACAA+AGG 0.677270 6_2:-23705059 Msa0913240:three_prime_UTR
GGGAATCAATGGAAGGAACG+AGG 0.681745 6_2:-23707276 Msa0913240:CDS
TATTGATAAGAGTGGCACGA+AGG 0.684541 6_2:+23705315 None:intergenic
GAAACTGTACCGATTTGACA+AGG 0.698764 6_2:-23707301 Msa0913240:CDS
GAAATCTGAGGAGAAAACCG+AGG 0.701527 6_2:-23705477 Msa0913240:CDS
GCCGGCGATGAAGAAGACAC+CGG 0.712296 6_2:-23707924 Msa0913240:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTCTTATTTGATTTTTAAT+TGG - chr6_2:23706068-23706087 Msa0913240:intron 10.0%
!! CATAAAAAAATCACAAAAAA+CGG + chr6_2:23705351-23705370 None:intergenic 15.0%
!! TGAATAAAAGAAAAAGAAAA+AGG + chr6_2:23706281-23706300 None:intergenic 15.0%
!! ATAGGTTATACATAAATATT+TGG - chr6_2:23706470-23706489 Msa0913240:intron 15.0%
!! TTATTTGAATAAACAACTTA+TGG + chr6_2:23706564-23706583 None:intergenic 15.0%
!! ATAAGTTGTTTATTCAAATA+AGG - chr6_2:23706563-23706582 Msa0913240:intron 15.0%
!! AATGAATTAAATCATTATAC+GGG + chr6_2:23707142-23707161 None:intergenic 15.0%
!! CAATGAATTAAATCATTATA+CGG + chr6_2:23707143-23707162 None:intergenic 15.0%
!! AATTACAACAACAAAAAAAG+TGG + chr6_2:23705117-23705136 None:intergenic 20.0%
!!! ATCTTTAATTAGAAGTGTTA+TGG - chr6_2:23706038-23706057 Msa0913240:intron 20.0%
!!! GATTTTTAATTGGTTTTTGA+TGG - chr6_2:23706078-23706097 Msa0913240:intron 20.0%
!! CTGATTAATCTAAGTTAAAT+TGG - chr6_2:23706629-23706648 Msa0913240:intron 20.0%
!!! ATTTTACAATCAAACTTAAG+AGG + chr6_2:23706698-23706717 None:intergenic 20.0%
!! TTGATTGTAAAATAACTTGA+TGG - chr6_2:23706705-23706724 Msa0913240:CDS 20.0%
!!! GATGTTTTTGTTGTGAATTT+TGG - chr6_2:23705179-23705198 Msa0913240:three_prime_UTR 25.0%
!!! TGTGATTTTGTTGTGAATAT+TGG - chr6_2:23705211-23705230 Msa0913240:three_prime_UTR 25.0%
!!! GTGATTTTTGTTGTGAATTT+TGG - chr6_2:23705244-23705263 Msa0913240:three_prime_UTR 25.0%
!!! TGAATTTTGGTAAAGCTTAT+GGG - chr6_2:23705257-23705276 Msa0913240:three_prime_UTR 25.0%
!!! TTGCAATGTTTTTGTGATTT+TGG - chr6_2:23705448-23705467 Msa0913240:CDS 25.0%
! CAAGATCAATAAACAATCAA+AGG + chr6_2:23705868-23705887 None:intergenic 25.0%
! CTTCTAATTAAAGATGTCTT+TGG + chr6_2:23706033-23706052 None:intergenic 25.0%
!!! TGTGTTTGATTGTTTTGTTT+TGG - chr6_2:23706108-23706127 Msa0913240:intron 25.0%
!!! ACATATTCACTAGTTGTTTT+CGG - chr6_2:23706403-23706422 Msa0913240:intron 25.0%
!!! TTTATTTTTATAAGCACTCC+AGG - chr6_2:23706426-23706445 Msa0913240:intron 25.0%
!!! GATTTTTATTTGACATTCCT+TGG - chr6_2:23706599-23706618 Msa0913240:intron 25.0%
!! TGCTGTATTAGTATTTGTTA+GGG - chr6_2:23706671-23706690 Msa0913240:CDS 25.0%
!! ATAATTTGTACATGATCGTA+TGG + chr6_2:23706807-23706826 None:intergenic 25.0%
!! CTAATTTTGTAAGGTAGATT+GGG + chr6_2:23706957-23706976 None:intergenic 25.0%
!! ACTAATTTTGTAAGGTAGAT+TGG + chr6_2:23706958-23706977 None:intergenic 25.0%
!! TTAACTAGTATTTTGTGGAT+GGG - chr6_2:23707062-23707081 Msa0913240:intron 25.0%
! ATATGCCATAAATTTACACT+CGG + chr6_2:23707238-23707257 None:intergenic 25.0%
!! ATATGTTCATATTTTCGACA+AGG - chr6_2:23707542-23707561 Msa0913240:intron 25.0%
!! ATTTTATAGACTCAAATCAC+TGG - chr6_2:23707896-23707915 Msa0913240:CDS 25.0%
!!! AATTTCAAGTTATGAATCTG+AGG + chr6_2:23707987-23708006 None:intergenic 25.0%
! ATTCATAACTTGAAATTTGC+TGG - chr6_2:23707990-23708009 Msa0913240:five_prime_UTR 25.0%
TAGAGAGAGAAAGTGATAAA+GGG + chr6_2:23704914-23704933 None:intergenic 30.0%
TTAGAGAGAGAAAGTGATAA+AGG + chr6_2:23704915-23704934 None:intergenic 30.0%
!! GTGAATTTTGGTAAAGCTTA+TGG - chr6_2:23705256-23705275 Msa0913240:three_prime_UTR 30.0%
!! TGGGATTTTGTTCTGAATTT+TGG - chr6_2:23705276-23705295 Msa0913240:three_prime_UTR 30.0%
! TTTTGTATATTCTTGTTGCG+AGG - chr6_2:23705533-23705552 Msa0913240:CDS 30.0%
!!! TGTGAAGTTTTTGAAGCATA+AGG - chr6_2:23705661-23705680 Msa0913240:intron 30.0%
!!! TTTTTGAAGCATAAGGTTAC+TGG - chr6_2:23705668-23705687 Msa0913240:intron 30.0%
ATAAGGTTACTGGAAAAGTT+AGG - chr6_2:23705678-23705697 Msa0913240:intron 30.0%
! TCATTTTCTCAAATTACCAC+TGG + chr6_2:23705941-23705960 None:intergenic 30.0%
TTGTAAACTATGTTCAGACT+TGG - chr6_2:23706312-23706331 Msa0913240:intron 30.0%
GTTCGTGAAAACAACTTAAT+AGG - chr6_2:23706452-23706471 Msa0913240:intron 30.0%
GTGCTGTATTAGTATTTGTT+AGG - chr6_2:23706670-23706689 Msa0913240:CDS 30.0%
ATACCATAGGATCAAGTAAA+AGG + chr6_2:23706748-23706767 None:intergenic 30.0%
! TTTTACTTGATCCTATGGTA+TGG - chr6_2:23706747-23706766 Msa0913240:CDS 30.0%
AAGTTTGAATTCCATACCAT+AGG + chr6_2:23706761-23706780 None:intergenic 30.0%
ACCTTACAAAATTAGTGTAC+AGG - chr6_2:23706962-23706981 Msa0913240:intron 30.0%
! ACCTGTACACTAATTTTGTA+AGG + chr6_2:23706966-23706985 None:intergenic 30.0%
!! GGAAAAGCATTGTAAAGAAA+AGG + chr6_2:23707023-23707042 None:intergenic 30.0%
! GTTAACTAGTATTTTGTGGA+TGG - chr6_2:23707061-23707080 Msa0913240:intron 30.0%
AGAACAATATAAGCCTGAAA+AGG + chr6_2:23707199-23707218 None:intergenic 30.0%
ATTTACACTCGGCAATTAAT+AGG + chr6_2:23707227-23707246 None:intergenic 30.0%
AATTGCCGAGTGTAAATTTA+TGG - chr6_2:23707230-23707249 Msa0913240:CDS 30.0%
!! TTAAGAATTTGAGCGTTGAA+GGG - chr6_2:23707376-23707395 Msa0913240:intron 30.0%
! ATATTTTCGACAAGGCAATA+TGG - chr6_2:23707550-23707569 Msa0913240:intron 30.0%
TGCTGACAATAATTCAACAA+AGG + chr6_2:23707676-23707695 None:intergenic 30.0%
TTGTTGAATTATTGTCAGCA+AGG - chr6_2:23707676-23707695 Msa0913240:intron 30.0%
! GAATTTTGAACAAGTCATGT+TGG - chr6_2:23707786-23707805 Msa0913240:intron 30.0%
GTAGAAGTAAGTACAAACAA+AGG - chr6_2:23707846-23707865 Msa0913240:CDS 30.0%
TATGATGTGACTGAACAAAA+TGG - chr6_2:23708021-23708040 Msa0913240:five_prime_UTR 30.0%
TCTATGAATCACTGACACAT+CGG - chr6_2:23705768-23705787 Msa0913240:intron 35.0%
ATTGATGTAAACACGTGTGT+CGG - chr6_2:23705820-23705839 Msa0913240:intron 35.0%
AACAATCAAAGGAGAGAATC+CGG + chr6_2:23705857-23705876 None:intergenic 35.0%
GGAATGAGAAATCTTGTGTT+TGG - chr6_2:23706168-23706187 Msa0913240:intron 35.0%
TTGGCTTAACTCACTGAATT+TGG - chr6_2:23706648-23706667 Msa0913240:intron 35.0%
! CTTCCTTTTACTTGATCCTA+TGG - chr6_2:23706742-23706761 Msa0913240:CDS 35.0%
TAAGTTTGTGACATTACCGA+AGG - chr6_2:23706875-23706894 Msa0913240:intron 35.0%
! ATGCTTTTCCCTGCTTATAA+TGG - chr6_2:23707033-23707052 Msa0913240:intron 35.0%
! TGCTTTTCCCTGCTTATAAT+GGG - chr6_2:23707034-23707053 Msa0913240:intron 35.0%
! CAGGGTTAACTAGTATTTTG+TGG - chr6_2:23707057-23707076 Msa0913240:intron 35.0%
! TTTTACCTAACATGATCCTG+TGG - chr6_2:23707096-23707115 Msa0913240:intron 35.0%
GTGAAATGTTTGCAATCCAA+TGG + chr6_2:23707177-23707196 None:intergenic 35.0%
! TGCAAACATTTCACCTTTTC+AGG - chr6_2:23707183-23707202 Msa0913240:CDS 35.0%
GTTAGATTGCAGAAAGTTCA+TGG - chr6_2:23707281-23707300 Msa0913240:CDS 35.0%
CTTGCTTTCCTCTTTATTCA+GGG + chr6_2:23707331-23707350 None:intergenic 35.0%
CTTCAACGCTCAAATTCTTA+AGG + chr6_2:23707377-23707396 None:intergenic 35.0%
!! CTTAAGAATTTGAGCGTTGA+AGG - chr6_2:23707375-23707394 Msa0913240:intron 35.0%
!! TTTCTCCTTAGTTTTCTCCT+CGG + chr6_2:23707448-23707467 None:intergenic 35.0%
ACACCAGAAAAAGAAAGCAA+GGG - chr6_2:23707471-23707490 Msa0913240:intron 35.0%
!! TGAGAGAGTATTGATAAGAG+TGG + chr6_2:23707601-23707620 None:intergenic 35.0%
ACAAAAACAACCTGAAGACT+AGG + chr6_2:23707628-23707647 None:intergenic 35.0%
TTTGTTGCTACGTTATTGAG+TGG - chr6_2:23707643-23707662 Msa0913240:intron 35.0%
TGAATTATTGTCAGCAAGGT+TGG - chr6_2:23707680-23707699 Msa0913240:intron 35.0%
! TTGAACAAGTCATGTTGGTT+TGG - chr6_2:23707791-23707810 Msa0913240:intron 35.0%
! TTTCTAGAGAGAGAGTGAAG+GGG + chr6_2:23704891-23704910 None:intergenic 40.0%
! GTTTCTAGAGAGAGAGTGAA+GGG + chr6_2:23704892-23704911 None:intergenic 40.0%
ATCTTCCTCTTCGTGATGAT+CGG + chr6_2:23704955-23704974 None:intergenic 40.0%
ACTTCCTGAAGTTGGATGAT+CGG + chr6_2:23705020-23705039 None:intergenic 40.0%
TTCTTCATCTTCTTCACCAG+TGG + chr6_2:23705051-23705070 None:intergenic 40.0%
!! GAAACTGTACCGATTTGACA+AGG - chr6_2:23705604-23705623 Msa0913240:CDS 40.0%
!! TGTACCGATTTGACAAGGAA+GGG - chr6_2:23705609-23705628 Msa0913240:CDS 40.0%
GATTCCCTTCCTTGTCAAAT+CGG + chr6_2:23705616-23705635 None:intergenic 40.0%
TTGACAAGGAAGGGAATCAA+TGG - chr6_2:23705618-23705637 Msa0913240:CDS 40.0%
TCAGTACTCACTGAGATGAT+TGG + chr6_2:23705741-23705760 None:intergenic 40.0%
!! TGCTCTTGCACAGTCATTTT+AGG + chr6_2:23706143-23706162 None:intergenic 40.0%
!! GTTCAGACTTGGTGCTTATT+TGG - chr6_2:23706323-23706342 Msa0913240:intron 40.0%
!! GTTGTTTTCACGAACTATCC+TGG + chr6_2:23706447-23706466 None:intergenic 40.0%
GATTAATCAGTGCAACACCA+AGG + chr6_2:23706619-23706638 None:intergenic 40.0%
ACATCCAAACGTGAAGATGT+GGG - chr6_2:23706832-23706851 Msa0913240:intron 40.0%
GTAAGGTAGATTGGGATCAT+TGG + chr6_2:23706949-23706968 None:intergenic 40.0%
AAGGTGCACATAATTCGACA+AGG + chr6_2:23707004-23707023 None:intergenic 40.0%
TGCTGAATCCCTGAATAAAG+AGG - chr6_2:23707320-23707339 Msa0913240:intron 40.0%
CCTTGCTTTCCTCTTTATTC+AGG + chr6_2:23707332-23707351 None:intergenic 40.0%
CCTGAATAAAGAGGAAAGCA+AGG - chr6_2:23707329-23707348 Msa0913240:intron 40.0%
GAAAGACGAAGAGAAATCTG+AGG - chr6_2:23707416-23707435 Msa0913240:intron 40.0%
GAAAACCGAGGAGAAAACTA+AGG - chr6_2:23707440-23707459 Msa0913240:intron 40.0%
GACACCAGAAAAAGAAAGCA+AGG - chr6_2:23707470-23707489 Msa0913240:intron 40.0%
! TCTCCCTTGCTTTCTTTTTC+TGG + chr6_2:23707477-23707496 None:intergenic 40.0%
CATAATCAAGCAGATGAACC+AGG + chr6_2:23707522-23707541 None:intergenic 40.0%
CAAGGCAATATGGCAAAGTT+TGG - chr6_2:23707560-23707579 Msa0913240:intron 40.0%
TATTGATAAGAGTGGCACGA+AGG + chr6_2:23707593-23707612 None:intergenic 40.0%
!!! AGCAAGGTTGGTTTTTGAGT+CGG - chr6_2:23707692-23707711 Msa0913240:intron 40.0%
CGGGTTTGAATCATTGAGAT+TGG - chr6_2:23707712-23707731 Msa0913240:intron 40.0%
! ATCATTGAGATTGGCGCTTT+TGG - chr6_2:23707721-23707740 Msa0913240:intron 40.0%
!! AAGTCATGTTGGTTTGGTGT+AGG - chr6_2:23707797-23707816 Msa0913240:intron 40.0%
!! AGTCATGTTGGTTTGGTGTA+GGG - chr6_2:23707798-23707817 Msa0913240:intron 40.0%
! GGTTTCTAGAGAGAGAGTGA+AGG + chr6_2:23704893-23704912 None:intergenic 45.0%
AAACAGCGACTTCCTGAAGT+TGG + chr6_2:23705028-23705047 None:intergenic 45.0%
! GAGAGAGAGAGAGAGTATAC+AGG + chr6_2:23705085-23705104 None:intergenic 45.0%
!! CTGTACCGATTTGACAAGGA+AGG - chr6_2:23705608-23705627 Msa0913240:CDS 45.0%
CAAGGAAGGGAATCAATGGA+AGG - chr6_2:23705622-23705641 Msa0913240:CDS 45.0%
AATCACTGACACATCGGCAT+TGG - chr6_2:23705774-23705793 Msa0913240:intron 45.0%
!! TGTGTCGGTGTTGTAGATAC+CGG - chr6_2:23705835-23705854 Msa0913240:intron 45.0%
ACGAACACCTGACACAACAA+TGG - chr6_2:23705900-23705919 Msa0913240:intron 45.0%
GTCAGATGCTAACATGTGTC+AGG - chr6_2:23705992-23706011 Msa0913240:intron 45.0%
GACATCCAAACGTGAAGATG+TGG - chr6_2:23706831-23706850 Msa0913240:intron 45.0%
!! TTTCCCTGCTTATAATGGGC+AGG - chr6_2:23707038-23707057 Msa0913240:intron 45.0%
!! TTCCCTGCTTATAATGGGCA+GGG - chr6_2:23707039-23707058 Msa0913240:intron 45.0%
AACCCTGCCCATTATAAGCA+GGG + chr6_2:23707044-23707063 None:intergenic 45.0%
TAACCCTGCCCATTATAAGC+AGG + chr6_2:23707045-23707064 None:intergenic 45.0%
AAGTGCCACAGGATCATGTT+AGG + chr6_2:23707104-23707123 None:intergenic 45.0%
!! TGTTACGTTAGAAGTGCCAC+AGG + chr6_2:23707115-23707134 None:intergenic 45.0%
CATTGCTGCTGTCTTTCCAT+TGG - chr6_2:23707158-23707177 Msa0913240:intron 45.0%
GAAATCTGAGGAGAAAACCG+AGG - chr6_2:23707428-23707447 Msa0913240:intron 45.0%
GAAAAGAAAGTCGAAGAGCC+TGG - chr6_2:23707501-23707520 Msa0913240:intron 45.0%
GGCAATATGGCAAAGTTTGG+TGG - chr6_2:23707563-23707582 Msa0913240:intron 45.0%
! CTCTCATAGTCCTAGTCTTC+AGG - chr6_2:23707615-23707634 Msa0913240:intron 45.0%
!!! GCAAGGTTGGTTTTTGAGTC+GGG - chr6_2:23707693-23707712 Msa0913240:intron 45.0%
! AGATTGGCGCTTTTGGTCTA+TGG - chr6_2:23707728-23707747 Msa0913240:intron 45.0%
! GATTGGCGCTTTTGGTCTAT+GGG - chr6_2:23707729-23707748 Msa0913240:intron 45.0%
!! ATGTTGGTTTGGTGTAGGGA+TGG - chr6_2:23707802-23707821 Msa0913240:intron 45.0%
!! TGTTGGTTTGGTGTAGGGAT+GGG - chr6_2:23707803-23707822 Msa0913240:intron 45.0%
!! TGAGGCGTCGTCATCAAAAT+CGG + chr6_2:23707969-23707988 None:intergenic 45.0%
!! AAGCACCGATCATCACGAAG+AGG - chr6_2:23704947-23704966 Msa0913240:three_prime_UTR 50.0%
GGGAATCAATGGAAGGAACG+AGG - chr6_2:23705629-23705648 Msa0913240:intron 50.0%
! GTCAGTGCCATTGTTGTGTC+AGG + chr6_2:23705910-23705929 None:intergenic 50.0%
! GCACTGACATGTTACACCAG+TGG - chr6_2:23705922-23705941 Msa0913240:intron 50.0%
! ATGACTGTGCAAGAGCATGC+TGG - chr6_2:23706146-23706165 Msa0913240:intron 50.0%
! TGACTGTGCAAGAGCATGCT+GGG - chr6_2:23706147-23706166 Msa0913240:intron 50.0%
ATCTTGTGTTTGGCACGCGA+AGG - chr6_2:23706178-23706197 Msa0913240:intron 50.0%
CTCACCCACATCTTCACGTT+TGG + chr6_2:23706839-23706858 None:intergenic 50.0%
CTTAGATGCCACCTGTGTGT+GGG - chr6_2:23706913-23706932 Msa0913240:intron 50.0%
CTTAAGGAGATCAGCAGCAG+TGG + chr6_2:23707361-23707380 None:intergenic 50.0%
!! GTTGGTTTGGTGTAGGGATG+GGG - chr6_2:23707804-23707823 Msa0913240:intron 50.0%
GAAGAGGAAGATGTTCCCGC+CGG - chr6_2:23704963-23704982 Msa0913240:three_prime_UTR 55.0%
CGCTCCGATCATCCAACTTC+AGG - chr6_2:23705013-23705032 Msa0913240:three_prime_UTR 55.0%
! CAGGAAGTCGCTGTTTCCAC+TGG - chr6_2:23705032-23705051 Msa0913240:three_prime_UTR 55.0%
CAATGGAAGGAACGAGGAGC+AGG - chr6_2:23705635-23705654 Msa0913240:intron 55.0%
CACGCGAAGGACTTTGCTGA+TGG - chr6_2:23706191-23706210 Msa0913240:intron 55.0%
ACCGAAGGCTGTTGTGCATG+CGG - chr6_2:23706890-23706909 Msa0913240:intron 55.0%
GCTTAGATGCCACCTGTGTG+TGG - chr6_2:23706912-23706931 Msa0913240:intron 55.0%
!! GTTTGGTGTAGGGATGGGGA+GGG - chr6_2:23707808-23707827 Msa0913240:intron 55.0%
GTGTCTTCTTCATCGCCGGC+GGG + chr6_2:23704981-23705000 None:intergenic 60.0%
GGTGTCTTCTTCATCGCCGG+CGG + chr6_2:23704982-23705001 None:intergenic 60.0%
GCCGGCGATGAAGAAGACAC+CGG - chr6_2:23704981-23705000 Msa0913240:three_prime_UTR 60.0%
GCCGGTGTCTTCTTCATCGC+CGG + chr6_2:23704985-23705004 None:intergenic 60.0%
GATCGGAGCGATTTGAGCGC+CGG + chr6_2:23705003-23705022 None:intergenic 60.0%
GCCGCATGCACAACAGCCTT+CGG + chr6_2:23706894-23706913 None:intergenic 60.0%
CCATTGTGCCCACACACAGG+TGG + chr6_2:23706924-23706943 None:intergenic 60.0%
CCACCTGTGTGTGGGCACAA+TGG - chr6_2:23706921-23706940 Msa0913240:intron 60.0%
!! GGTTTGGTGTAGGGATGGGG+AGG - chr6_2:23707807-23707826 Msa0913240:intron 60.0%
GCGCCATTGTGCCCACACAC+AGG + chr6_2:23706927-23706946 None:intergenic 65.0%
! AGGGATGGGGAGGGTGCAGT+CGG - chr6_2:23707817-23707836 Msa0913240:intron 65.0%
! GGGATGGGGAGGGTGCAGTC+GGG - chr6_2:23707818-23707837 Msa0913240:intron 70.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 23704881 23708046 23704881 ID=Msa0913240;Name=Msa0913240
chr6_2 mRNA 23704881 23708046 23704881 ID=Msa0913240-mRNA-1;Parent=Msa0913240;Name=Msa0913240-mRNA-1;_AED=0.01;_eAED=0.01;_QI=58|1|1|1|1|1|4|510|224
chr6_2 exon 23704881 23705641 23704881 ID=Msa0913240-mRNA-1:exon:4664;Parent=Msa0913240-mRNA-1
chr6_2 exon 23706667 23706792 23706667 ID=Msa0913240-mRNA-1:exon:4663;Parent=Msa0913240-mRNA-1
chr6_2 exon 23707178 23707329 23707178 ID=Msa0913240-mRNA-1:exon:4662;Parent=Msa0913240-mRNA-1
chr6_2 exon 23707843 23708046 23707843 ID=Msa0913240-mRNA-1:exon:4661;Parent=Msa0913240-mRNA-1
chr6_2 five_prime_UTR 23707989 23708046 23707989 ID=Msa0913240-mRNA-1:five_prime_utr;Parent=Msa0913240-mRNA-1
chr6_2 CDS 23707843 23707988 23707843 ID=Msa0913240-mRNA-1:cds;Parent=Msa0913240-mRNA-1
chr6_2 CDS 23707178 23707329 23707178 ID=Msa0913240-mRNA-1:cds;Parent=Msa0913240-mRNA-1
chr6_2 CDS 23706667 23706792 23706667 ID=Msa0913240-mRNA-1:cds;Parent=Msa0913240-mRNA-1
chr6_2 CDS 23705391 23705641 23705391 ID=Msa0913240-mRNA-1:cds;Parent=Msa0913240-mRNA-1
chr6_2 three_prime_UTR 23704881 23705390 23704881 ID=Msa0913240-mRNA-1:three_prime_utr;Parent=Msa0913240-mRNA-1
Gene Sequence

>Msa0913240

ATGTCTACAAGCACCGATCATCACGAAGAGGAAGATGTTCCCGCCGGCGATGAAGAAGACACCGGCGCTCAAATCGCTCCGATCATCCAACTTCAGGAAGTCGCTGTTTCCACTGGTGAAGAAGATGAAGAAGCTATTCTCGACCTAAAAGCGAAACTGTACCGATTTGACAAGGAAGGGAATCAATGGAAGGAACGAGGAGCAGGAACTGTGAAGTTTTTGAAGCATAAGGTTACTGGAAAAGTTAGGCTTGTTATGAGACAATCGAAGACTCTTAAGATCTGTGCCAATCATCTCATTTTGCCTAAAATGACTGTGCAAGAGCATGCTGGGAATGAGAAATCTTGTGTTTGGCACGCGAAGGACTTTGCTGATGGTGAATTGAAAGACGAGTTTTTCTGCATTCGATTTGCGTCAATTGAAAATTGCAGAAAGTTCATGGAGACATTTCAAGAAATTGCTGAATCCCTGAATAAAGAGGAAAGCAAGGATGCATCCACTGCTGCTGATCTCCTTAAGAATTTGAGCGTTGAAGGGAAAGCAGATGCAGAAAAGAAAGACGAAGAGAAATCTGAGGAGAAAACCGAGGAGAAAACTAAGGAGAAAGAGACACCAGAAAAAGAAAGCAAGGGAGATTCAGAAAAGAAAGTCGAAGAGCCTGGTTCATCTGCTTGA

Protein sequence

>Msa0913240

MSTSTDHHEEEDVPAGDEEDTGAQIAPIIQLQEVAVSTGEEDEEAILDLKAKLYRFDKEGNQWKERGAGTVKFLKHKVTGKVRLVMRQSKTLKICANHLILPKMTVQEHAGNEKSCVWHAKDFADGELKDEFFCIRFASIENCRKFMETFQEIAESLNKEESKDASTAADLLKNLSVEGKADAEKKDEEKSEEKTEEKTKEKETPEKESKGDSEKKVEEPGSSA*