AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0550540


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0550540 MtrunA17_Chr8g0387491 87.838 370 9 1 1 334 1 370 0.0 647
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0550540 AT1G63980.2 44.949 396 150 8 1 336 1 388 4.48e-90 275
Msa0550540 AT1G63980.1 44.724 398 150 8 1 336 1 390 9.51e-90 274

Find 105 sgRNAs with CRISPR-Local

Find 507 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAACTTCTTCAGCTTCATTT+TGG 0.132422 4_1:-46082194 None:intergenic
ACTAGATAGCCCATTAAAAT+TGG 0.259545 4_1:+46076029 Msa0550540:five_prime_UTR
CATTGATTGGAGTTAGTTAT+AGG 0.266102 4_1:+46082907 Msa0550540:three_prime_UTR
ACGTAATTGAGAGGGATTTC+AGG 0.274276 4_1:-46076245 None:intergenic
TAGTCTCTAATGTTACTGTT+AGG 0.295990 4_1:-46076138 None:intergenic
ACGGAAAGCGGCGGATTTCC+TGG 0.296784 4_1:-46076276 None:intergenic
ATAGCATCCAGCTACTTTCT+TGG 0.306181 4_1:-46082044 None:intergenic
GAGTGGTGGGGCAATAAGTT+TGG 0.332881 4_1:+46081635 Msa0550540:CDS
CAGGGTACAAAGACATCATT+TGG 0.354894 4_1:+46082070 Msa0550540:CDS
AATAAGTTTGGGTTTGTCTC+TGG 0.369180 4_1:+46081647 Msa0550540:CDS
AGTCTCTAATGTTACTGTTA+GGG 0.380263 4_1:-46076137 None:intergenic
GCGGTTGAGTTGGGTCGAAT+CGG 0.388380 4_1:-46076063 None:intergenic
AAATGTTGTAATATGTTTGA+TGG 0.394201 4_1:+46082962 Msa0550540:three_prime_UTR
CACTTGGTTGCGGTTGAGTT+GGG 0.395433 4_1:-46076072 None:intergenic
CACCACTCTGGATGGATATC+AGG 0.397376 4_1:-46081620 None:intergenic
AGTGGTGGGGCAATAAGTTT+GGG 0.402996 4_1:+46081636 Msa0550540:CDS
AATAGAGAGTAACACGGTTA+AGG 0.407598 4_1:+46077177 Msa0550540:intron
TGACAATGCTGATGATGAAT+TGG 0.413502 4_1:+46078482 Msa0550540:CDS
TCTTCAAAATCTTGAAAGTC+AGG 0.415020 4_1:-46078519 None:intergenic
TCCTTGTGGTCTAGTAGCTC+TGG 0.416775 4_1:-46077245 None:intergenic
TAGACCTTGCTTTCCTGTTG+TGG 0.423482 4_1:-46082005 None:intergenic
ATGCAATCTACACTTCGAAC+AGG 0.424771 4_1:-46082887 None:intergenic
CCACTTGGTTGCGGTTGAGT+TGG 0.424927 4_1:-46076073 None:intergenic
AACTTACAAGAATTCCTTCA+AGG 0.428878 4_1:-46077406 None:intergenic
TCAATTACGTCGGTGTCGCC+AGG 0.434618 4_1:+46076258 Msa0550540:CDS
AATTCCTTCAAGGTCCTTTG+AGG 0.436390 4_1:-46077396 None:intergenic
GAAGTGTAGATTGCATTGAT+TGG 0.440651 4_1:+46082894 Msa0550540:three_prime_UTR
TTGTTTAAGGGATGGGAAGA+AGG 0.443849 4_1:+46076401 Msa0550540:intron
GGTGGAAATGGTGGTGGAAA+AGG 0.445635 4_1:+46082153 Msa0550540:CDS
ACATCTGAAATTGCTAAAAG+TGG 0.450166 4_1:+46081710 Msa0550540:CDS
ACAGCAACCTCAGGATCAAC+AGG 0.453089 4_1:-46077220 None:intergenic
TCACTTTATGTACAGGCGCC+TGG 0.454342 4_1:+46082299 Msa0550540:intron
TTCCAGGATAAATCCACAAC+AGG 0.459724 4_1:+46081992 Msa0550540:intron
CGGTTGAGTTGGGTCGAATC+GGG 0.462146 4_1:-46076062 None:intergenic
TGATGTTATACCTGTGTCAT+TGG 0.466241 4_1:-46077064 None:intergenic
GGAAATGGTGGTGGAAAAGG+TGG 0.470669 4_1:+46082156 Msa0550540:CDS
TATTCCTCAAAGGACCTTGA+AGG 0.471143 4_1:+46077392 Msa0550540:CDS
TTCAGTTTCAATGATTCTCC+AGG 0.471393 4_1:-46082317 None:intergenic
AAGTTTGGGTTTGTCTCTGG+TGG 0.475356 4_1:+46081650 Msa0550540:CDS
TTTGTCTCTGGTGGATTGCT+CGG 0.476345 4_1:+46081659 Msa0550540:CDS
AACTTATTGCCCCACCACTC+TGG 0.483516 4_1:-46081632 None:intergenic
CAATTCTGTCGGCGGAGCCA+TGG 0.484361 4_1:+46076217 Msa0550540:exon
TGGGAAGAAGGAGAAGGTCT+TGG 0.485044 4_1:+46076413 Msa0550540:CDS
AGGGATTTCAGGCGCCGCCA+TGG 0.485148 4_1:-46076234 None:intergenic
GGTCCTTGACTTCAGCTGAC+AGG 0.488330 4_1:+46082721 Msa0550540:intron
TTTCCGTCTCATGAAGCAAA+TGG 0.492523 4_1:+46076292 Msa0550540:CDS
TATTCATTTCATTCTGGAGG+AGG 0.497475 4_1:+46082831 Msa0550540:three_prime_UTR
GACAGGACCAAGAAAGTAGC+TGG 0.500619 4_1:+46082037 Msa0550540:CDS
ATACCTGTGTCATTGGATAC+TGG 0.507229 4_1:-46077057 None:intergenic
ACTTCCAAGTGTGTGTCCAC+TGG 0.510943 4_1:+46083048 Msa0550540:three_prime_UTR
AACAGATGATGAGGTGGAAA+TGG 0.511159 4_1:+46082141 Msa0550540:CDS
TCTTATTCATTTCATTCTGG+AGG 0.512159 4_1:+46082828 Msa0550540:three_prime_UTR
TGTTGCTTACTTGAAGCAAA+AGG 0.520825 4_1:+46082409 Msa0550540:CDS
CGAAGGGAAAACAGTGCGAT+TGG 0.521301 4_1:+46082762 Msa0550540:CDS
ACAACAGGAAAGCAAGGTCT+AGG 0.522374 4_1:+46082007 Msa0550540:CDS
AGATACAAGAAAAGAGAAAG+AGG 0.522803 4_1:+46077353 Msa0550540:intron
TTTAGCAATTTCAGATGTAG+AGG 0.526470 4_1:-46081705 None:intergenic
CTGATATCCATCCAGAGTGG+TGG 0.533288 4_1:+46081621 Msa0550540:CDS
AAAGCAAGGTCTAGGTATCA+AGG 0.534292 4_1:+46082015 Msa0550540:CDS
TGATGAGGTGGAAATGGTGG+TGG 0.535119 4_1:+46082147 Msa0550540:CDS
AAGGTCTAGGTATCAAGGAC+AGG 0.540732 4_1:+46082020 Msa0550540:CDS
ATCAACAGGAACAGCCGCCT+CGG 0.543358 4_1:-46077206 None:intergenic
TGATATCCATCCAGAGTGGT+GGG 0.544536 4_1:+46081622 Msa0550540:CDS
TCTTTGAAAGTGATGCCACT+TGG 0.546706 4_1:-46076088 None:intergenic
GAACCATTTGCTTCATGAGA+CGG 0.548721 4_1:-46076295 None:intergenic
TATTGCCCCACCACTCTGGA+TGG 0.549715 4_1:-46081628 None:intergenic
CATCTGAAATTGCTAAAAGT+GGG 0.561005 4_1:+46081711 Msa0550540:CDS
TGTCTCTCATTATTCCTCAA+AGG 0.561666 4_1:+46077382 Msa0550540:CDS
TTCTGTCGGCGGAGCCATGG+CGG 0.562520 4_1:+46076220 Msa0550540:exon
TTTCAATATCTTAAAACCAG+TGG 0.567292 4_1:-46083064 None:intergenic
AAAACCAGTGGACACACACT+TGG 0.567593 4_1:-46083052 None:intergenic
GGCTGTTCCTGTTGATCCTG+AGG 0.579039 4_1:+46077213 Msa0550540:CDS
AAGGGATGGGAAGAAGGAGA+AGG 0.581093 4_1:+46076407 Msa0550540:intron
AAAGAGTGACATATGTGAGG+AGG 0.581608 4_1:+46078455 Msa0550540:CDS
AGAGAGTAACACGGTTAAGG+TGG 0.584039 4_1:+46077180 Msa0550540:intron
AGATGATGAGGTGGAAATGG+TGG 0.587185 4_1:+46082144 Msa0550540:CDS
ATACTTGGACTAAATTGTAG+AGG 0.589919 4_1:-46081772 None:intergenic
CTTCATGAGACGGAAAGCGG+CGG 0.593596 4_1:-46076285 None:intergenic
GATACAAGAAAAGAGAAAGA+GGG 0.596354 4_1:+46077354 Msa0550540:intron
AAAGTGATGCCACTTGGTTG+CGG 0.599481 4_1:-46076082 None:intergenic
GCTCTGGATACAGCAACCTC+AGG 0.600918 4_1:-46077229 None:intergenic
AAATCCACAACAGGAAAGCA+AGG 0.604142 4_1:+46082001 Msa0550540:CDS
GACTTCAGCTGACAGGTAGT+CGG 0.607201 4_1:+46082728 Msa0550540:intron
AAGAGTGACATATGTGAGGA+GGG 0.607283 4_1:+46078456 Msa0550540:CDS
AAAATCAGCGTCAATTCTGT+CGG 0.608748 4_1:+46076206 Msa0550540:five_prime_UTR
AAACGAAACAGATGATGAGG+TGG 0.610509 4_1:+46082135 Msa0550540:CDS
AGAAAACGAAACAGATGATG+AGG 0.613423 4_1:+46082132 Msa0550540:CDS
TTGCTTCATGAGACGGAAAG+CGG 0.618335 4_1:-46076288 None:intergenic
TGAAATTGCTAAAAGTGGGA+TGG 0.620584 4_1:+46081715 Msa0550540:CDS
CACGGTTAAGGTGGAAACCG+AGG 0.620613 4_1:+46077189 Msa0550540:CDS
TGCAATCTACACTTCGAACA+GGG 0.627865 4_1:-46082886 None:intergenic
TGAGTTGGGTCGAATCGGGT+CGG 0.634294 4_1:-46076058 None:intergenic
GCGACACCGACGTAATTGAG+AGG 0.647025 4_1:-46076254 None:intergenic
GAGCTACTAGACCACAAGGA+AGG 0.652543 4_1:+46077248 Msa0550540:CDS
CGACACCGACGTAATTGAGA+GGG 0.655049 4_1:-46076253 None:intergenic
GATATCCATCCAGAGTGGTG+GGG 0.660296 4_1:+46081623 Msa0550540:CDS
ATCAGCGTCAATTCTGTCGG+CGG 0.662194 4_1:+46076209 Msa0550540:five_prime_UTR
TCCAGAGCTACTAGACCACA+AGG 0.671642 4_1:+46077244 Msa0550540:CDS
GCGCCAGTATCCAATGACAC+AGG 0.676662 4_1:+46077054 Msa0550540:CDS
CCAACTCAACCGCAACCAAG+TGG 0.680606 4_1:+46076073 Msa0550540:five_prime_UTR
GAAATCCCTCTCAATTACGT+CGG 0.692335 4_1:+46076248 Msa0550540:CDS
AAACGTACAGACCTTCCTTG+TGG 0.713884 4_1:-46077259 None:intergenic
GGTTTAAATAGAGAGTAACA+CGG 0.716553 4_1:+46077171 Msa0550540:intron
GGTTAAGGTGGAAACCGAGG+CGG 0.731442 4_1:+46077192 Msa0550540:CDS
GTCCTGATATCCATCCAGAG+TGG 0.749851 4_1:+46081618 Msa0550540:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAAAATTAAAGTAAAAAAAA+AGG + chr4_1:46079318-46079337 Msa0550540:intron 10.0%
!! AAAATAAGAAAAAAAAATTG+GGG - chr4_1:46079730-46079749 None:intergenic 10.0%
!! CAAAATAAGAAAAAAAAATT+GGG - chr4_1:46079731-46079750 None:intergenic 10.0%
!! ACAAAATAAGAAAAAAAAAT+TGG - chr4_1:46079732-46079751 None:intergenic 10.0%
!!! ACTTTTTCTTATTTTTTCTA+TGG + chr4_1:46076338-46076357 Msa0550540:intron 15.0%
!!! TTGTTTGTTCAATTTTAAAT+AGG + chr4_1:46076847-46076866 Msa0550540:intron 15.0%
!! AAATAAGAAAAAAAAATTGG+GGG - chr4_1:46079729-46079748 None:intergenic 15.0%
!!! ATTTTACATTGAAAAAGAAA+AGG + chr4_1:46081367-46081386 Msa0550540:intron 15.0%
!!! TTTTACATTGAAAAAGAAAA+GGG + chr4_1:46081368-46081387 Msa0550540:intron 15.0%
!!! ATTCAAATTTAAAATAGAAC+AGG - chr4_1:46082502-46082521 None:intergenic 15.0%
!!! TTGAAATTTTGATACATTTT+TGG + chr4_1:46082798-46082817 Msa0550540:exon 15.0%
!! AATTCGATTCATTTGTTTAA+GGG + chr4_1:46076389-46076408 Msa0550540:intron 20.0%
!! ATTAAGCTGTTTATTCAAAT+AGG + chr4_1:46076817-46076836 Msa0550540:intron 20.0%
!!! GTTCAATTTTAAATAGGTAT+TGG + chr4_1:46076853-46076872 Msa0550540:intron 20.0%
!! TGTTAATGAACATATTATGA+TGG + chr4_1:46077128-46077147 Msa0550540:intron 20.0%
!! TATCTTTGTAATCTATTTCA+TGG + chr4_1:46077580-46077599 Msa0550540:intron 20.0%
!! AATGAATAGATCTATAGAAT+CGG - chr4_1:46077683-46077702 None:intergenic 20.0%
!! ATTGTTTACTTCTATAATGT+TGG + chr4_1:46078421-46078440 Msa0550540:intron 20.0%
!!! AGTCTTTATGTTATTTGTAT+TGG + chr4_1:46078569-46078588 Msa0550540:intron 20.0%
!!! GTCTTTATGTTATTTGTATT+GGG + chr4_1:46078570-46078589 Msa0550540:intron 20.0%
!! TTACTTGGTTTAAATATCTT+GGG - chr4_1:46079057-46079076 None:intergenic 20.0%
!!! CACTTAAGTTTTTATTGAAT+TGG - chr4_1:46079508-46079527 None:intergenic 20.0%
!! AATAAGAAAAAAAAATTGGG+GGG - chr4_1:46079728-46079747 None:intergenic 20.0%
!! TTTGAACATGTTTCATTTAT+TGG - chr4_1:46080559-46080578 None:intergenic 20.0%
!! ATGACCTTACAATTATATAA+AGG + chr4_1:46081861-46081880 Msa0550540:intron 20.0%
!! AATTAATTATTACACCATTC+AGG - chr4_1:46081956-46081975 None:intergenic 20.0%
!! ACAATATATTTATCATGCAA+TGG - chr4_1:46082592-46082611 None:intergenic 20.0%
!! ATTGCATGATAAATATATTG+TGG + chr4_1:46082591-46082610 Msa0550540:intron 20.0%
!!! AAATTTTGATACATTTTTGG+CGG + chr4_1:46082801-46082820 Msa0550540:exon 20.0%
!!! TTTTCTTATTCATTTCATTC+TGG + chr4_1:46082825-46082844 Msa0550540:three_prime_UTR 20.0%
!! AAATGTTGTAATATGTTTGA+TGG + chr4_1:46082962-46082981 Msa0550540:three_prime_UTR 20.0%
!! TTGTACTCTTATACAAATAA+TGG + chr4_1:46083095-46083114 Msa0550540:intron 20.0%
!!! CGGTATTATCCAATTTTAAT+GGG - chr4_1:46076041-46076060 None:intergenic 25.0%
!! TCGGTATTATCCAATTTTAA+TGG - chr4_1:46076042-46076061 None:intergenic 25.0%
! GAATTCGATTCATTTGTTTA+AGG + chr4_1:46076388-46076407 Msa0550540:intron 25.0%
! ATTGGTGAAAAAAAGAAGAA+AGG - chr4_1:46076503-46076522 None:intergenic 25.0%
!! GTTCTGAATAAACAGTAAAT+TGG - chr4_1:46076521-46076540 None:intergenic 25.0%
! TATGATAAGTGCTTATGTAT+AGG - chr4_1:46076774-46076793 None:intergenic 25.0%
! TAATTTACTGAAAATCACAG+AGG - chr4_1:46077092-46077111 None:intergenic 25.0%
!!! GTTTGTGTTTTTATCTATTG+TGG + chr4_1:46077150-46077169 Msa0550540:intron 25.0%
!! AAAAAGAAAAGTCTTTTGAG+AGG - chr4_1:46077326-46077345 None:intergenic 25.0%
! TCATACATAACATCTTTACA+TGG - chr4_1:46077546-46077565 None:intergenic 25.0%
! AGTGTCAATAGAATATAGTA+CGG - chr4_1:46078188-46078207 None:intergenic 25.0%
!!! TTTCAAGATTTTGAAGATGA+AGG + chr4_1:46078525-46078544 Msa0550540:CDS 25.0%
! AAAATCAATGAATACAAGCA+AGG - chr4_1:46078997-46079016 None:intergenic 25.0%
! GTTACTTGGTTTAAATATCT+TGG - chr4_1:46079058-46079077 None:intergenic 25.0%
! TATTTAAACCAAGTAACTTG+TGG + chr4_1:46079061-46079080 Msa0550540:intron 25.0%
!!! TGGAATGTAATTTTAGCAAA+TGG - chr4_1:46079132-46079151 None:intergenic 25.0%
! AAAGTAAAAAAAAAGGGCTT+AGG + chr4_1:46079325-46079344 Msa0550540:intron 25.0%
! AAGTAAAAAAAAAGGGCTTA+GGG + chr4_1:46079326-46079345 Msa0550540:intron 25.0%
! CCATAACAATATGATTGTAA+GGG - chr4_1:46079356-46079375 None:intergenic 25.0%
! CCTTACAATCATATTGTTAT+GGG + chr4_1:46079354-46079373 Msa0550540:intron 25.0%
!! AGTTTTTATTGAATTGGAGA+AGG - chr4_1:46079502-46079521 None:intergenic 25.0%
! ATAAGAAAAAAAAATTGGGG+GGG - chr4_1:46079727-46079746 None:intergenic 25.0%
!!! TTCAAGTTGAAGGAATATAA+TGG - chr4_1:46079957-46079976 None:intergenic 25.0%
! AAAGAATGAAAAAGGATTCA+TGG - chr4_1:46080038-46080057 None:intergenic 25.0%
!!! GAAGGATACAATTTTAGTTT+TGG - chr4_1:46080297-46080316 None:intergenic 25.0%
! AATTGAAACATGTTCAACAT+TGG - chr4_1:46080359-46080378 None:intergenic 25.0%
! TAAAAAAACAAGTCAAGTGA+GGG + chr4_1:46080403-46080422 Msa0550540:intron 25.0%
! AAAAGAAAAAAAACTCTCGT+GGG - chr4_1:46080521-46080540 None:intergenic 25.0%
! AAAAAGAAAAAAAACTCTCG+TGG - chr4_1:46080522-46080541 None:intergenic 25.0%
! ATATACATTGCAAATCTCTT+TGG - chr4_1:46080718-46080737 None:intergenic 25.0%
! ATTTGCAATGTATATCAATG+AGG + chr4_1:46080723-46080742 Msa0550540:intron 25.0%
! TTAGTATCTTCAACTTCAAA+AGG - chr4_1:46080806-46080825 None:intergenic 25.0%
!!! TTCAAGTTGAAGGATTATAA+TGG + chr4_1:46080965-46080984 Msa0550540:intron 25.0%
! ACGTTGCATTAAATCTAAAT+GGG + chr4_1:46081121-46081140 Msa0550540:intron 25.0%
! AATAATCACAGAAATGCAAA+TGG - chr4_1:46081531-46081550 None:intergenic 25.0%
! TCTTGATCTTGTTCAAAAAA+AGG - chr4_1:46081749-46081768 None:intergenic 25.0%
! CCATCCTTTATATAATTGTA+AGG - chr4_1:46081868-46081887 None:intergenic 25.0%
! CCTTACAATTATATAAAGGA+TGG + chr4_1:46081865-46081884 Msa0550540:intron 25.0%
! AGAACTAAATTTCAAGATAC+TGG - chr4_1:46081905-46081924 None:intergenic 25.0%
! AAATATGCAACACGAAAAAT+AGG - chr4_1:46082247-46082266 None:intergenic 25.0%
! AAATAGAACAGGAAGAAATT+TGG - chr4_1:46082491-46082510 None:intergenic 25.0%
!! CCTTTTACATTACTTCAAAA+AGG - chr4_1:46082552-46082571 None:intergenic 25.0%
!!! CCTTTTTGAAGTAATGTAAA+AGG + chr4_1:46082549-46082568 Msa0550540:intron 25.0%
! CATGATAAATATATTGTGGA+CGG + chr4_1:46082595-46082614 Msa0550540:intron 25.0%
! TTTCAATATCTTAAAACCAG+TGG - chr4_1:46083067-46083086 None:intergenic 25.0%
ACTAGATAGCCCATTAAAAT+TGG + chr4_1:46076029-46076048 Msa0550540:five_prime_UTR 30.0%
AGTCTCTAATGTTACTGTTA+GGG - chr4_1:46076140-46076159 None:intergenic 30.0%
TAGTCTCTAATGTTACTGTT+AGG - chr4_1:46076141-46076160 None:intergenic 30.0%
GATTCATTTGTTTAAGGGAT+GGG + chr4_1:46076394-46076413 Msa0550540:intron 30.0%
AAAGAAAAACAAGGGATCAA+AGG + chr4_1:46076437-46076456 Msa0550540:CDS 30.0%
ATCTACTCACATAAGTATGT+CGG + chr4_1:46076655-46076674 Msa0550540:intron 30.0%
TCGGTATTTGTGATACTATT+TGG + chr4_1:46076674-46076693 Msa0550540:intron 30.0%
CGGTATTTGTGATACTATTT+GGG + chr4_1:46076675-46076694 Msa0550540:intron 30.0%
GAGTATGTTATCAAATTGTG+TGG - chr4_1:46076911-46076930 None:intergenic 30.0%
GGTTTAAATAGAGAGTAACA+CGG + chr4_1:46077171-46077190 Msa0550540:intron 30.0%
AGATACAAGAAAAGAGAAAG+AGG + chr4_1:46077353-46077372 Msa0550540:intron 30.0%
GATACAAGAAAAGAGAAAGA+GGG + chr4_1:46077354-46077373 Msa0550540:intron 30.0%
AACTTACAAGAATTCCTTCA+AGG - chr4_1:46077409-46077428 None:intergenic 30.0%
!! AAAAAAAAAATGGTGTTGCG+CGG + chr4_1:46077508-46077527 Msa0550540:intron 30.0%
GTTAGAGACTTATTTGGATT+TGG - chr4_1:46077620-46077639 None:intergenic 30.0%
ATTTCGGTTAGAGACTTATT+TGG - chr4_1:46077626-46077645 None:intergenic 30.0%
TAATGCATCTTCCACAATTT+CGG - chr4_1:46077642-46077661 None:intergenic 30.0%
GTTAGAATGCACATATTAAC+AGG - chr4_1:46077714-46077733 None:intergenic 30.0%
GTTAATATGTGCATTCTAAC+TGG + chr4_1:46077714-46077733 Msa0550540:intron 30.0%
AATGACCATGTATATGTTCT+GGG - chr4_1:46077800-46077819 None:intergenic 30.0%
TAATGACCATGTATATGTTC+TGG - chr4_1:46077801-46077820 None:intergenic 30.0%
AAGCCATATTTACACTTGAT+GGG + chr4_1:46077832-46077851 Msa0550540:intron 30.0%
AAACCCATCAAGTGTAAATA+TGG - chr4_1:46077838-46077857 None:intergenic 30.0%
!! GTTTTTGTTATCATCTGCAA+TGG + chr4_1:46077854-46077873 Msa0550540:intron 30.0%
GTCGTTAAACTTAACTGAAA+TGG + chr4_1:46077953-46077972 Msa0550540:intron 30.0%
GATCTAGTAAATGTATGGTA+AGG - chr4_1:46078137-46078156 None:intergenic 30.0%
GTGTCAATAGAATATAGTAC+GGG - chr4_1:46078187-46078206 None:intergenic 30.0%
AATCACAAAGAAAGAAGTCT+TGG - chr4_1:46078232-46078251 None:intergenic 30.0%
ACTTCTATAATGTTGGTCAT+AGG + chr4_1:46078428-46078447 Msa0550540:intron 30.0%
AAAAAAGAGTGACATATGTG+AGG + chr4_1:46078452-46078471 Msa0550540:CDS 30.0%
TCTTCAAAATCTTGAAAGTC+AGG - chr4_1:46078522-46078541 None:intergenic 30.0%
! TAACACTTGAAGATTAGTTG+GGG - chr4_1:46078787-46078806 None:intergenic 30.0%
! GTAACACTTGAAGATTAGTT+GGG - chr4_1:46078788-46078807 None:intergenic 30.0%
TGTAACACTTGAAGATTAGT+TGG - chr4_1:46078789-46078808 None:intergenic 30.0%
CGAGAATAAAAGAAACATAG+CGG - chr4_1:46078838-46078857 None:intergenic 30.0%
! TGTTTCTTTTATTCTCGTGT+TGG + chr4_1:46078841-46078860 Msa0550540:intron 30.0%
ATATCATACCACAAGTTACT+TGG - chr4_1:46079072-46079091 None:intergenic 30.0%
ATTTCTAACTTAGAGGTGAA+AGG - chr4_1:46079103-46079122 None:intergenic 30.0%
! TTAAATGGGAGTATAAGACT+TGG - chr4_1:46079210-46079229 None:intergenic 30.0%
CCCTTACAATCATATTGTTA+TGG + chr4_1:46079353-46079372 Msa0550540:intron 30.0%
CCCATAACAATATGATTGTA+AGG - chr4_1:46079357-46079376 None:intergenic 30.0%
TTGTTATGGGAAAATCATCA+TGG + chr4_1:46079367-46079386 Msa0550540:intron 30.0%
ATCCTTGACTACTCAAATAT+AGG + chr4_1:46079432-46079451 Msa0550540:intron 30.0%
TTTGCGAAAGAGTGATTAAA+TGG - chr4_1:46079615-46079634 None:intergenic 30.0%
TTTAATCACTCTTTCGCAAA+AGG + chr4_1:46079615-46079634 Msa0550540:intron 30.0%
ACTTCATCAACATGTTCATA+GGG + chr4_1:46079672-46079691 Msa0550540:intron 30.0%
TAAGAAAAAAAAATTGGGGG+GGG - chr4_1:46079726-46079745 None:intergenic 30.0%
TTTAAAGACAACATGTTCGT+AGG + chr4_1:46079756-46079775 Msa0550540:intron 30.0%
TTAAAGACAACATGTTCGTA+GGG + chr4_1:46079757-46079776 Msa0550540:intron 30.0%
AATTATCCACTCTAACCAAT+AGG - chr4_1:46079810-46079829 None:intergenic 30.0%
TCGACAACAAAGAATGAAAA+AGG - chr4_1:46080046-46080065 None:intergenic 30.0%
CGGATAAATATATAGATGAG+GGG - chr4_1:46080154-46080173 None:intergenic 30.0%
CCGGATAAATATATAGATGA+GGG - chr4_1:46080155-46080174 None:intergenic 30.0%
CCCTCATCTATATATTTATC+CGG + chr4_1:46080152-46080171 Msa0550540:intron 30.0%
TCCGGATAAATATATAGATG+AGG - chr4_1:46080156-46080175 None:intergenic 30.0%
AATCTTGAGCTGCTTATTAA+AGG + chr4_1:46080325-46080344 Msa0550540:intron 30.0%
AAACATGTTCAACATTGGAA+AGG - chr4_1:46080354-46080373 None:intergenic 30.0%
GTAAAAAAACAAGTCAAGTG+AGG + chr4_1:46080402-46080421 Msa0550540:intron 30.0%
AAAGAAAAAAAACTCTCGTG+GGG - chr4_1:46080520-46080539 None:intergenic 30.0%
! CAACTTTTTGAATCTTGAGA+TGG - chr4_1:46080607-46080626 None:intergenic 30.0%
CTCAAGATTCAAAAAGTTGA+AGG + chr4_1:46080608-46080627 Msa0550540:intron 30.0%
!! AAATCTCTTTGGAATGGATT+TGG - chr4_1:46080707-46080726 None:intergenic 30.0%
AGAATAACAGATTGCTCATT+CGG + chr4_1:46080751-46080770 Msa0550540:intron 30.0%
! TTCGGAGAAGTATATAAATG+AGG + chr4_1:46080769-46080788 Msa0550540:intron 30.0%
! TCGGAGAAGTATATAAATGA+GGG + chr4_1:46080770-46080789 Msa0550540:intron 30.0%
CAAATACGTCAAAAGAATTC+TGG - chr4_1:46081030-46081049 None:intergenic 30.0%
ATATATCCACTGTAACCAAT+AGG + chr4_1:46081090-46081109 Msa0550540:intron 30.0%
CATTTAGATTTAATGCAACG+TGG - chr4_1:46081122-46081141 None:intergenic 30.0%
CACGTTGCATTAAATCTAAA+TGG + chr4_1:46081120-46081139 Msa0550540:intron 30.0%
CGTTGCATTAAATCTAAATG+GGG + chr4_1:46081122-46081141 Msa0550540:intron 30.0%
GTTGCATTAAATCTAAATGG+GGG + chr4_1:46081123-46081142 Msa0550540:intron 30.0%
GGGCTAAAAAATCAAAAAGT+GGG + chr4_1:46081143-46081162 Msa0550540:intron 30.0%
AATCAAAAAGTGGGTAAATG+TGG + chr4_1:46081152-46081171 Msa0550540:intron 30.0%
ATCAAAAAGTGGGTAAATGT+GGG + chr4_1:46081153-46081172 Msa0550540:intron 30.0%
! GTTTCTCAATTGAGTGATTT+TGG - chr4_1:46081211-46081230 None:intergenic 30.0%
ACTCAATTGAGAAACTATGA+GGG + chr4_1:46081216-46081235 Msa0550540:intron 30.0%
AATCGCTCAATTGAAACTAT+GGG + chr4_1:46081243-46081262 Msa0550540:intron 30.0%
! ATTCGAGAAGTACAAAAAGA+TGG - chr4_1:46081318-46081337 None:intergenic 30.0%
AAAAAGAAAAGGGTCATTTG+AGG + chr4_1:46081378-46081397 Msa0550540:intron 30.0%
GTTCTTTATAACCAGTAACA+TGG + chr4_1:46081407-46081426 Msa0550540:intron 30.0%
AATGCAATATAGACTGATTG+AGG - chr4_1:46081582-46081601 None:intergenic 30.0%
AGTCTATATTGCATTGTTAC+AGG + chr4_1:46081587-46081606 Msa0550540:intron 30.0%
TTTAGCAATTTCAGATGTAG+AGG - chr4_1:46081708-46081727 None:intergenic 30.0%
! ACATCTGAAATTGCTAAAAG+TGG + chr4_1:46081710-46081729 Msa0550540:CDS 30.0%
! CATCTGAAATTGCTAAAAGT+GGG + chr4_1:46081711-46081730 Msa0550540:CDS 30.0%
ATACTTGGACTAAATTGTAG+AGG - chr4_1:46081775-46081794 None:intergenic 30.0%
! GTTTCATTTTCTAACCTGAA+TGG + chr4_1:46081939-46081958 Msa0550540:intron 30.0%
! AACTTCTTCAGCTTCATTTT+GGG - chr4_1:46082196-46082215 None:intergenic 30.0%
CAATCATGATTTCACTATCA+AGG - chr4_1:46082274-46082293 None:intergenic 30.0%
! TGATTAGTCACTTTATGTAC+AGG + chr4_1:46082292-46082311 Msa0550540:intron 30.0%
TCATGCAATGGAAGTTAAAA+AGG - chr4_1:46082580-46082599 None:intergenic 30.0%
TCTTATTCATTTCATTCTGG+AGG + chr4_1:46082828-46082847 Msa0550540:three_prime_UTR 30.0%
! CATTGATTGGAGTTAGTTAT+AGG + chr4_1:46082907-46082926 Msa0550540:three_prime_UTR 30.0%
! AGACATTTCCTTTTCCATAG+AGG + chr4_1:46076110-46076129 Msa0550540:five_prime_UTR 35.0%
AAAATCAGCGTCAATTCTGT+CGG + chr4_1:46076206-46076225 Msa0550540:five_prime_UTR 35.0%
CGATTCATTTGTTTAAGGGA+TGG + chr4_1:46076393-46076412 Msa0550540:intron 35.0%
GTCTTGGCAAAGAAAAACAA+GGG + chr4_1:46076429-46076448 Msa0550540:CDS 35.0%
TGTTATGCTATGCTATGCTT+AGG + chr4_1:46076605-46076624 Msa0550540:intron 35.0%
GTTATGCTATGCTATGCTTA+GGG + chr4_1:46076606-46076625 Msa0550540:intron 35.0%
TGATGTTATACCTGTGTCAT+TGG - chr4_1:46077067-46077086 None:intergenic 35.0%
AATAGAGAGTAACACGGTTA+AGG + chr4_1:46077177-46077196 Msa0550540:intron 35.0%
TGTCTCTCATTATTCCTCAA+AGG + chr4_1:46077382-46077401 Msa0550540:CDS 35.0%
!! TCTTTAAGATGTCCAGTGAA+TGG - chr4_1:46077447-46077466 None:intergenic 35.0%
TAAGTCTCTAACCGAAATTG+TGG + chr4_1:46077628-46077647 Msa0550540:intron 35.0%
GATGCATTATGCTCTGATAT+TGG + chr4_1:46077653-46077672 Msa0550540:intron 35.0%
TAACACCCAGAACATATACA+TGG + chr4_1:46077792-46077811 Msa0550540:intron 35.0%
GAAGCCATATTTACACTTGA+TGG + chr4_1:46077831-46077850 Msa0550540:intron 35.0%
CATGTGTGTTGCAATTCATA+AGG + chr4_1:46077884-46077903 Msa0550540:intron 35.0%
TCAGTTAAGTTTAACGACGA+AGG - chr4_1:46077951-46077970 None:intergenic 35.0%
!! TACTTTGAGATTGCAATCTC+TGG - chr4_1:46077986-46078005 None:intergenic 35.0%
ATCGGGATCTAGTAAATGTA+TGG - chr4_1:46078142-46078161 None:intergenic 35.0%
AGAGGTTTGAGTCATTGAAT+CGG - chr4_1:46078160-46078179 None:intergenic 35.0%
TAACATGCAGTTAAGAAGCT+TGG - chr4_1:46078366-46078385 None:intergenic 35.0%
! TGACAATGCTGATGATGAAT+TGG + chr4_1:46078482-46078501 Msa0550540:CDS 35.0%
! GGATTTTGTAGTTAAGAGAG+TGG - chr4_1:46078700-46078719 None:intergenic 35.0%
!! TAGAAAAGATGGTGGAAACT+AGG - chr4_1:46078752-46078771 None:intergenic 35.0%
! TCCACCATCTTTTCTACTAT+AGG + chr4_1:46078756-46078775 Msa0550540:intron 35.0%
ACCTATAGTAGAAAAGATGG+TGG - chr4_1:46078760-46078779 None:intergenic 35.0%
AGCACCTATAGTAGAAAAGA+TGG - chr4_1:46078763-46078782 None:intergenic 35.0%
TAAGACCGACAATGTTGTAT+GGG - chr4_1:46078889-46078908 None:intergenic 35.0%
TTAAGACCGACAATGTTGTA+TGG - chr4_1:46078890-46078909 None:intergenic 35.0%
AGTTGAAGGGAACACTTTAT+CGG - chr4_1:46078919-46078938 None:intergenic 35.0%
TAAGTACCACACTAGTTGAA+GGG - chr4_1:46078932-46078951 None:intergenic 35.0%
TACAAGCAAGGTTGTTGAAA+TGG - chr4_1:46078985-46079004 None:intergenic 35.0%
GGGTTCATAGTACAAAATGA+TGG - chr4_1:46079037-46079056 None:intergenic 35.0%
TAGAGGCAAGACAAAGTATA+TGG - chr4_1:46079152-46079171 None:intergenic 35.0%
GTAGATGATATAGTCCTACT+CGG - chr4_1:46079249-46079268 None:intergenic 35.0%
CATCTACAGAAAACACATCT+CGG + chr4_1:46079262-46079281 Msa0550540:intron 35.0%
TAGTCAAGGATATGTATGAG+GGG - chr4_1:46079423-46079442 None:intergenic 35.0%
GTAGTCAAGGATATGTATGA+GGG - chr4_1:46079424-46079443 None:intergenic 35.0%
AGTAGTCAAGGATATGTATG+AGG - chr4_1:46079425-46079444 None:intergenic 35.0%
TGCCTATATTTGAGTAGTCA+AGG - chr4_1:46079437-46079456 None:intergenic 35.0%
AGATGTTGTGGAAAGGATTT+AGG - chr4_1:46079462-46079481 None:intergenic 35.0%
AAATCCTTTCCACAACATCT+AGG + chr4_1:46079462-46079481 Msa0550540:intron 35.0%
TTATGCCTAGGAATCAACAT+TGG - chr4_1:46079549-46079568 None:intergenic 35.0%
TCCTAGGCATAAAACCAAAT+TGG + chr4_1:46079557-46079576 Msa0550540:intron 35.0%
!!! ACCAATTTGGTTTTATGCCT+AGG - chr4_1:46079561-46079580 None:intergenic 35.0%
AAGAAAAGACACTCGAGTTA+CGG - chr4_1:46079587-46079606 None:intergenic 35.0%
GACTTCATCAACATGTTCAT+AGG + chr4_1:46079671-46079690 Msa0550540:intron 35.0%
AAGAAAAAAAAATTGGGGGG+GGG - chr4_1:46079725-46079744 None:intergenic 35.0%
TGCAACAGTTTCATTCCTAT+TGG + chr4_1:46079792-46079811 Msa0550540:intron 35.0%
! TTCATTCCTATTGGTTAGAG+TGG + chr4_1:46079801-46079820 Msa0550540:intron 35.0%
ATACGCATGCATAAGAATTC+AGG + chr4_1:46079892-46079911 Msa0550540:intron 35.0%
CATTGAGGTTAAGGCAATTA+AGG - chr4_1:46079928-46079947 None:intergenic 35.0%
!! CAAAGTGATGTTCAAGTTGA+AGG - chr4_1:46080955-46080974 None:intergenic 35.0%
AACGCATTGTGGTATAGATT+AGG + chr4_1:46080101-46080120 Msa0550540:intron 35.0%
TTGTCTATCAATGAGACTGA+TGG - chr4_1:46080195-46080214 None:intergenic 35.0%
TTAACGAAGGCAAAGAAGTA+TGG - chr4_1:46080266-46080285 None:intergenic 35.0%
TTTGGATGAACTGTTAACGA+AGG - chr4_1:46080279-46080298 None:intergenic 35.0%
AAGAAAAAAAACTCTCGTGG+GGG - chr4_1:46080519-46080538 None:intergenic 35.0%
! CATTGCAAATCTCTTTGGAA+TGG - chr4_1:46080713-46080732 None:intergenic 35.0%
! CGGAGAAGTATATAAATGAG+GGG + chr4_1:46080771-46080790 Msa0550540:intron 35.0%
TCTTCAACTTCAAAAGGAGT+AGG - chr4_1:46080800-46080819 None:intergenic 35.0%
AAAGAATGCAAAGGAACTGT+GGG + chr4_1:46080887-46080906 Msa0550540:intron 35.0%
!! CAAAGTGATGTTCAAGTTGA+AGG + chr4_1:46080955-46080974 Msa0550540:intron 35.0%
ATTATAATGGTGCACACGTT+GGG + chr4_1:46080978-46080997 Msa0550540:intron 35.0%
! CAGAACATTTTACCATGTGA+AGG - chr4_1:46081053-46081072 None:intergenic 35.0%
! TTCATTCCTATTGGTTACAG+TGG - chr4_1:46081099-46081118 None:intergenic 35.0%
GGGGCTAAAAAATCAAAAAG+TGG + chr4_1:46081142-46081161 Msa0550540:intron 35.0%
TCAAAAAGTGGGTAAATGTG+GGG + chr4_1:46081154-46081173 Msa0550540:intron 35.0%
AATTGCTCAACTGAAACTAG+AGG + chr4_1:46081183-46081202 Msa0550540:intron 35.0%
ATTGCTCAACTGAAACTAGA+GGG + chr4_1:46081184-46081203 Msa0550540:intron 35.0%
CACTCAATTGAGAAACTATG+AGG + chr4_1:46081215-46081234 Msa0550540:intron 35.0%
GAATCGCTCAATTGAAACTA+TGG + chr4_1:46081242-46081261 Msa0550540:intron 35.0%
ATCGCTCAATTGAAACTATG+GGG + chr4_1:46081244-46081263 Msa0550540:intron 35.0%
! GATCAGTTTTTCCATGTTAC+TGG - chr4_1:46081421-46081440 None:intergenic 35.0%
AAAAATGTCTCCACAAATGG+TGG - chr4_1:46081462-46081481 None:intergenic 35.0%
AGGAAAAATGTCTCCACAAA+TGG - chr4_1:46081465-46081484 None:intergenic 35.0%
! TTTTTCTTACAAAACCCTGC+AGG - chr4_1:46081485-46081504 None:intergenic 35.0%
! AATAAGTTTGGGTTTGTCTC+TGG + chr4_1:46081647-46081666 Msa0550540:CDS 35.0%
TGAAATTGCTAAAAGTGGGA+TGG + chr4_1:46081715-46081734 Msa0550540:CDS 35.0%
! AAGTTTGAAAGGCACATACT+TGG - chr4_1:46081790-46081809 None:intergenic 35.0%
AAGTATGTGCCTTTCAAACT+TGG + chr4_1:46081789-46081808 Msa0550540:intron 35.0%
CAGCATATACCAAGTTTGAA+AGG - chr4_1:46081801-46081820 None:intergenic 35.0%
TCAAGATACTGGTAGAACAT+CGG - chr4_1:46081894-46081913 None:intergenic 35.0%
TATCCTGGAATAGCAATCAA+CGG - chr4_1:46081982-46082001 None:intergenic 35.0%
AGAAAACGAAACAGATGATG+AGG + chr4_1:46082132-46082151 Msa0550540:CDS 35.0%
! CAACTTCTTCAGCTTCATTT+TGG - chr4_1:46082197-46082216 None:intergenic 35.0%
! AGCAGATTTTAAACCAAGTG+AGG + chr4_1:46082221-46082240 Msa0550540:intron 35.0%
TTCAGTTTCAATGATTCTCC+AGG - chr4_1:46082320-46082339 None:intergenic 35.0%
! TGACTTGTCTTCGAAAAAAG+AGG + chr4_1:46082385-46082404 Msa0550540:CDS 35.0%
! TGTTGCTTACTTGAAGCAAA+AGG + chr4_1:46082409-46082428 Msa0550540:CDS 35.0%
CTTACTTGAAGCAAAAGGTA+TGG + chr4_1:46082414-46082433 Msa0550540:intron 35.0%
! TATTCATTTCATTCTGGAGG+AGG + chr4_1:46082831-46082850 Msa0550540:three_prime_UTR 35.0%
! AAAAAAGGGTTGAGGTGTTT+GGG + chr4_1:46082854-46082873 Msa0550540:three_prime_UTR 35.0%
! GAAGTGTAGATTGCATTGAT+TGG + chr4_1:46082894-46082913 Msa0550540:three_prime_UTR 35.0%
! TCTTTGAAAGTGATGCCACT+TGG - chr4_1:46076091-46076110 None:intergenic 40.0%
! AGGGTTTTCCTCTATGGAAA+AGG - chr4_1:46076121-46076140 None:intergenic 40.0%
! ACTGTTAGGGTTTTCCTCTA+TGG - chr4_1:46076127-46076146 None:intergenic 40.0%
ACGTAATTGAGAGGGATTTC+AGG - chr4_1:46076248-46076267 None:intergenic 40.0%
GAAATCCCTCTCAATTACGT+CGG + chr4_1:46076248-46076267 Msa0550540:CDS 40.0%
TTTCCGTCTCATGAAGCAAA+TGG + chr4_1:46076292-46076311 Msa0550540:CDS 40.0%
GAACCATTTGCTTCATGAGA+CGG - chr4_1:46076298-46076317 None:intergenic 40.0%
TTGTTTAAGGGATGGGAAGA+AGG + chr4_1:46076401-46076420 Msa0550540:intron 40.0%
GGTCTTGGCAAAGAAAAACA+AGG + chr4_1:46076428-46076447 Msa0550540:CDS 40.0%
ACCAACAAACAAGACACTAC+TGG + chr4_1:46076473-46076492 Msa0550540:intron 40.0%
!! ACCAGTAGTGTCTTGTTTGT+TGG - chr4_1:46076477-46076496 None:intergenic 40.0%
ATTAGAGAAGCCGAACCAAT+GGG + chr4_1:46076876-46076895 Msa0550540:intron 40.0%
! ATACCTGTGTCATTGGATAC+TGG - chr4_1:46077060-46077079 None:intergenic 40.0%
TATTCCTCAAAGGACCTTGA+AGG + chr4_1:46077392-46077411 Msa0550540:CDS 40.0%
AATTCCTTCAAGGTCCTTTG+AGG - chr4_1:46077399-46077418 None:intergenic 40.0%
TCTTTACATGGCAATGTAGC+AGG - chr4_1:46077534-46077553 None:intergenic 40.0%
TGTAATCTATTTCATGGCCC+TGG + chr4_1:46077586-46077605 Msa0550540:intron 40.0%
TGGATTTGGCAAATTGTCCA+GGG - chr4_1:46077606-46077625 None:intergenic 40.0%
TTGGATTTGGCAAATTGTCC+AGG - chr4_1:46077607-46077626 None:intergenic 40.0%
!! TCTGGGTGTTATTCCAGATT+CGG - chr4_1:46077783-46077802 None:intergenic 40.0%
!! CTTTAAAATCAGCTGCTCCA+TGG + chr4_1:46078016-46078035 Msa0550540:intron 40.0%
! GATAGGTCCAACCTTTTCAA+GGG - chr4_1:46078095-46078114 None:intergenic 40.0%
GAGGTTTGAGTCATTGAATC+GGG - chr4_1:46078159-46078178 None:intergenic 40.0%
GAATATAGTACGGGTTTGAG+AGG - chr4_1:46078178-46078197 None:intergenic 40.0%
AAAGAGTGACATATGTGAGG+AGG + chr4_1:46078455-46078474 Msa0550540:CDS 40.0%
AAGAGTGACATATGTGAGGA+GGG + chr4_1:46078456-46078475 Msa0550540:CDS 40.0%
! CAAGCCTTATCCCATTAAGT+GGG + chr4_1:46078624-46078643 Msa0550540:intron 40.0%
TGTAGTTAAGAGAGTGGATG+TGG - chr4_1:46078694-46078713 None:intergenic 40.0%
GTTTGGACATGAAGAATCTG+TGG - chr4_1:46078721-46078740 None:intergenic 40.0%
GAAACTAGGTTTAGGTGGTT+TGG - chr4_1:46078738-46078757 None:intergenic 40.0%
!! AGATGGTGGAAACTAGGTTT+AGG - chr4_1:46078746-46078765 None:intergenic 40.0%
! AAAGAAACATAGCGGAGATG+AGG - chr4_1:46078830-46078849 None:intergenic 40.0%
GTAAGTACCACACTAGTTGA+AGG - chr4_1:46078933-46078952 None:intergenic 40.0%
AAGCAAGGTTGTTGAAATGG+AGG - chr4_1:46078982-46079001 None:intergenic 40.0%
! GCGAAGCATTTCTAACTTAG+AGG - chr4_1:46079110-46079129 None:intergenic 40.0%
AGTCGAGGGAGGAATTAAAT+GGG - chr4_1:46079224-46079243 None:intergenic 40.0%
CTTGTTTGAACATGCAGAGT+GGG - chr4_1:46079393-46079412 None:intergenic 40.0%
! TCTTGTTTGAACATGCAGAG+TGG - chr4_1:46079394-46079413 None:intergenic 40.0%
AGTCAAGGATATGTATGAGG+GGG - chr4_1:46079422-46079441 None:intergenic 40.0%
!! TCCATCCAATGTTGATTCCT+AGG + chr4_1:46079541-46079560 Msa0550540:intron 40.0%
AGAAAAAAAAATTGGGGGGG+GGG - chr4_1:46079724-46079743 None:intergenic 40.0%
AACAGAACATTTGACCAAGC+CGG + chr4_1:46079866-46079885 Msa0550540:intron 40.0%
ATATAATGGCGCACACATTG+AGG - chr4_1:46079943-46079962 None:intergenic 40.0%
TGCTCCAAGATTCATCTTGT+CGG + chr4_1:46079990-46080009 Msa0550540:intron 40.0%
AACAGATGCAACTACTTGTC+TGG + chr4_1:46080074-46080093 Msa0550540:intron 40.0%
TTAGGATCTTCAGCTTCAGA+AGG + chr4_1:46080119-46080138 Msa0550540:intron 40.0%
GATAGACAATGCAAGCTCTT+TGG + chr4_1:46080206-46080225 Msa0550540:intron 40.0%
! ACAATGCAAGCTCTTTGGAA+TGG + chr4_1:46080211-46080230 Msa0550540:intron 40.0%
GCTCAAGATTCAGAAGTTGA+AGG - chr4_1:46080315-46080334 None:intergenic 40.0%
CCTGCATTAACAGTTCTTCA+CGG - chr4_1:46080648-46080667 None:intergenic 40.0%
TTAATGCAGGCAAAGAAGCA+GGG + chr4_1:46080658-46080677 Msa0550540:intron 40.0%
! ATTTGGTGGCAATTGAACTG+GGG - chr4_1:46080690-46080709 None:intergenic 40.0%
!! GATTTGGTGGCAATTGAACT+GGG - chr4_1:46080691-46080710 None:intergenic 40.0%
!! TCTCTTTGGAATGGATTTGG+TGG - chr4_1:46080704-46080723 None:intergenic 40.0%
CTGCATCTGTTGTGTTAACT+CGG + chr4_1:46080860-46080879 Msa0550540:intron 40.0%
CAAAGAATGCAAAGGAACTG+TGG + chr4_1:46080886-46080905 Msa0550540:intron 40.0%
CACATGTTTCATGTTGTGAC+CGG + chr4_1:46080910-46080929 Msa0550540:intron 40.0%
CATCACTTTGCATTGCTCAA+AGG - chr4_1:46080945-46080964 None:intergenic 40.0%
GATTATAATGGTGCACACGT+TGG + chr4_1:46080977-46080996 Msa0550540:intron 40.0%
TTATAATGGTGCACACGTTG+GGG + chr4_1:46080979-46080998 Msa0550540:intron 40.0%
TTGACGTATTTGCCTTCACA+TGG + chr4_1:46081038-46081057 Msa0550540:intron 40.0%
CAAAAAGTGGGTAAATGTGG+GGG + chr4_1:46081155-46081174 Msa0550540:intron 40.0%
AAAAAGTGGGTAAATGTGGG+GGG + chr4_1:46081156-46081175 Msa0550540:intron 40.0%
TTGCTCAACTGAAACTAGAG+GGG + chr4_1:46081185-46081204 Msa0550540:intron 40.0%
GGCCAACAATGGAGAATTTA+GGG + chr4_1:46081265-46081284 Msa0550540:intron 40.0%
GCCAACAATGGAGAATTTAG+GGG + chr4_1:46081266-46081285 Msa0550540:intron 40.0%
CCAACAATGGAGAATTTAGG+GGG + chr4_1:46081267-46081286 Msa0550540:intron 40.0%
CAACAATGGAGAATTTAGGG+GGG + chr4_1:46081268-46081287 Msa0550540:intron 40.0%
TTCTCGAATTTCCCTTGTTG+TGG + chr4_1:46081329-46081348 Msa0550540:intron 40.0%
! TCTCGAATTTCCCTTGTTGT+GGG + chr4_1:46081330-46081349 Msa0550540:intron 40.0%
!! CTCTAAAATGCCACCATTTG+TGG + chr4_1:46081449-46081468 Msa0550540:intron 40.0%
GAAATGCAAATGGCAGAACA+CGG - chr4_1:46081521-46081540 None:intergenic 40.0%
TTCCAGGATAAATCCACAAC+AGG + chr4_1:46081992-46082011 Msa0550540:intron 40.0%
TTCCTGTTGTGGATTTATCC+TGG - chr4_1:46081997-46082016 None:intergenic 40.0%
AAATCCACAACAGGAAAGCA+AGG + chr4_1:46082001-46082020 Msa0550540:CDS 40.0%
AAAGCAAGGTCTAGGTATCA+AGG + chr4_1:46082015-46082034 Msa0550540:CDS 40.0%
! ATAGCATCCAGCTACTTTCT+TGG - chr4_1:46082047-46082066 None:intergenic 40.0%
!!! AGTAGCTGGATGCTATTTTC+AGG + chr4_1:46082051-46082070 Msa0550540:CDS 40.0%
!!! GTAGCTGGATGCTATTTTCA+GGG + chr4_1:46082052-46082071 Msa0550540:CDS 40.0%
CAGGGTACAAAGACATCATT+TGG + chr4_1:46082070-46082089 Msa0550540:CDS 40.0%
AAACGAAACAGATGATGAGG+TGG + chr4_1:46082135-46082154 Msa0550540:CDS 40.0%
AACAGATGATGAGGTGGAAA+TGG + chr4_1:46082141-46082160 Msa0550540:CDS 40.0%
AGACATGTCAGTGTAGAAGA+TGG - chr4_1:46082700-46082719 None:intergenic 40.0%
TCTTCTACACTGACATGTCT+TGG + chr4_1:46082700-46082719 Msa0550540:intron 40.0%
!! AGTCGGAAGTTTTGTATCGA+AGG + chr4_1:46082745-46082764 Msa0550540:CDS 40.0%
!! GTCGGAAGTTTTGTATCGAA+GGG + chr4_1:46082746-46082765 Msa0550540:CDS 40.0%
! TCATTCTGGAGGAGGAAAAA+AGG + chr4_1:46082839-46082858 Msa0550540:three_prime_UTR 40.0%
! CATTCTGGAGGAGGAAAAAA+GGG + chr4_1:46082840-46082859 Msa0550540:three_prime_UTR 40.0%
! GAAAAAAGGGTTGAGGTGTT+TGG + chr4_1:46082853-46082872 Msa0550540:three_prime_UTR 40.0%
TGCAATCTACACTTCGAACA+GGG - chr4_1:46082889-46082908 None:intergenic 40.0%
ATGCAATCTACACTTCGAAC+AGG - chr4_1:46082890-46082909 None:intergenic 40.0%
! AAAGTGATGCCACTTGGTTG+CGG - chr4_1:46076085-46076104 None:intergenic 45.0%
TTGCTTCATGAGACGGAAAG+CGG - chr4_1:46076291-46076310 None:intergenic 45.0%
GATTAGAGAAGCCGAACCAA+TGG + chr4_1:46076875-46076894 Msa0550540:intron 45.0%
! GTGTCAAATGCCCATTGGTT+CGG - chr4_1:46076889-46076908 None:intergenic 45.0%
AGAGAGTAACACGGTTAAGG+TGG + chr4_1:46077180-46077199 Msa0550540:intron 45.0%
AAACGTACAGACCTTCCTTG+TGG - chr4_1:46077262-46077281 None:intergenic 45.0%
ACTTCAGACACACCATTCAC+TGG + chr4_1:46077432-46077451 Msa0550540:intron 45.0%
! CCAGATTCGGTAATCAAACG+TGG - chr4_1:46077770-46077789 None:intergenic 45.0%
CCACGTTTGATTACCGAATC+TGG + chr4_1:46077767-46077786 Msa0550540:intron 45.0%
! CGATAGGTCCAACCTTTTCA+AGG - chr4_1:46078096-46078115 None:intergenic 45.0%
TGAAAAGGTTGGACCTATCG+TGG + chr4_1:46078096-46078115 Msa0550540:intron 45.0%
GAAAAGGTTGGACCTATCGT+GGG + chr4_1:46078097-46078116 Msa0550540:intron 45.0%
GACTACAATAGACCCACGAT+AGG - chr4_1:46078112-46078131 None:intergenic 45.0%
CCACTTAATGGGATAAGGCT+TGG - chr4_1:46078626-46078645 None:intergenic 45.0%
! CCAAGCCTTATCCCATTAAG+TGG + chr4_1:46078623-46078642 Msa0550540:intron 45.0%
CAGACCCACTTAATGGGATA+AGG - chr4_1:46078631-46078650 None:intergenic 45.0%
CTTATCCCATTAAGTGGGTC+TGG + chr4_1:46078629-46078648 Msa0550540:intron 45.0%
TGTAGCCAGACCCACTTAAT+GGG - chr4_1:46078637-46078656 None:intergenic 45.0%
ATGTAGCCAGACCCACTTAA+TGG - chr4_1:46078638-46078657 None:intergenic 45.0%
ATTAAGTGGGTCTGGCTACA+TGG + chr4_1:46078637-46078656 Msa0550540:intron 45.0%
TGGTGGAAACTAGGTTTAGG+TGG - chr4_1:46078743-46078762 None:intergenic 45.0%
TCCGTCCCATACAACATTGT+CGG + chr4_1:46078881-46078900 Msa0550540:intron 45.0%
ACCGACAATGTTGTATGGGA+CGG - chr4_1:46078885-46078904 None:intergenic 45.0%
AGTGTTCCCTTCAACTAGTG+TGG + chr4_1:46078923-46078942 Msa0550540:intron 45.0%
CGTATCACATAGAACACACG+AGG + chr4_1:46078952-46078971 Msa0550540:intron 45.0%
CAAGGTTGTTGAAATGGAGG+AGG - chr4_1:46078979-46078998 None:intergenic 45.0%
TTGTCTTGCCTCTACTCATG+CGG + chr4_1:46079158-46079177 Msa0550540:intron 45.0%
TATTGCTTCCGCATGAGTAG+AGG - chr4_1:46079169-46079188 None:intergenic 45.0%
GCGGAAGCAATATGCTTATG+AGG + chr4_1:46079177-46079196 Msa0550540:intron 45.0%
! GGGAGTATAAGACTTGGAGA+CGG - chr4_1:46079204-46079223 None:intergenic 45.0%
GAGTCGAGGGAGGAATTAAA+TGG - chr4_1:46079225-46079244 None:intergenic 45.0%
AGTGCCTAGATGTTGTGGAA+AGG - chr4_1:46079469-46079488 None:intergenic 45.0%
! GATAGAGTGCCTAGATGTTG+TGG - chr4_1:46079474-46079493 None:intergenic 45.0%
GCCTAGGAATCAACATTGGA+TGG - chr4_1:46079545-46079564 None:intergenic 45.0%
CGAGTTACGGCTAACCAATT+TGG - chr4_1:46079574-46079593 None:intergenic 45.0%
GAAAAAAAAATTGGGGGGGG+GGG - chr4_1:46079723-46079742 None:intergenic 45.0%
TCTTATGCATGCGTATTCGC+CGG - chr4_1:46079888-46079907 None:intergenic 45.0%
GTGACCGACAAGATGAATCT+TGG - chr4_1:46079997-46080016 None:intergenic 45.0%
CAATGAGACTGATGGAAGAG+CGG - chr4_1:46080187-46080206 None:intergenic 45.0%
!! CAAGCTCTTTGGAATGGACT+TGG + chr4_1:46080217-46080236 Msa0550540:intron 45.0%
CCGTGAAGAACTGTTAATGC+AGG + chr4_1:46080645-46080664 Msa0550540:intron 45.0%
GTTAATGCAGGCAAAGAAGC+AGG + chr4_1:46080657-46080676 Msa0550540:intron 45.0%
!! GGATTTGGTGGCAATTGAAC+TGG - chr4_1:46080692-46080711 None:intergenic 45.0%
CTCGGCAACAAAGAATGCAA+AGG + chr4_1:46080878-46080897 Msa0550540:intron 45.0%
TGCTCAAAGGTTCATCTTGC+CGG - chr4_1:46080932-46080951 None:intergenic 45.0%
CGTTGGGGCTAAAACAGTTA+AGG + chr4_1:46080994-46081013 Msa0550540:intron 45.0%
GCAACGTGGTTCATTCCTAT+TGG - chr4_1:46081108-46081127 None:intergenic 45.0%
TGAAACTATGGGGCCAACAA+TGG + chr4_1:46081254-46081273 Msa0550540:intron 45.0%
GGGCCAACAATGGAGAATTT+AGG + chr4_1:46081264-46081283 Msa0550540:intron 45.0%
CCCCCTAAATTCTCCATTGT+TGG - chr4_1:46081270-46081289 None:intergenic 45.0%
AATGGAGAATTTAGGGGGGT+GGG + chr4_1:46081272-46081291 Msa0550540:intron 45.0%
! TGTGGAGACATTTTTCCTGC+AGG + chr4_1:46081467-46081486 Msa0550540:intron 45.0%
! GTGGAGACATTTTTCCTGCA+GGG + chr4_1:46081468-46081487 Msa0550540:intron 45.0%
TGATATCCATCCAGAGTGGT+GGG + chr4_1:46081622-46081641 Msa0550540:CDS 45.0%
! AGTGGTGGGGCAATAAGTTT+GGG + chr4_1:46081636-46081655 Msa0550540:CDS 45.0%
! AAGTTTGGGTTTGTCTCTGG+TGG + chr4_1:46081650-46081669 Msa0550540:CDS 45.0%
!! TTTGTCTCTGGTGGATTGCT+CGG + chr4_1:46081659-46081678 Msa0550540:CDS 45.0%
! GTACCGTTGATTGCTATTCC+AGG + chr4_1:46081976-46081995 Msa0550540:intron 45.0%
TAGACCTTGCTTTCCTGTTG+TGG - chr4_1:46082008-46082027 None:intergenic 45.0%
ACAACAGGAAAGCAAGGTCT+AGG + chr4_1:46082007-46082026 Msa0550540:CDS 45.0%
AAGGTCTAGGTATCAAGGAC+AGG + chr4_1:46082020-46082039 Msa0550540:CDS 45.0%
AGATGATGAGGTGGAAATGG+TGG + chr4_1:46082144-46082163 Msa0550540:CDS 45.0%
CACGAAAAATAGGCCTCACT+TGG - chr4_1:46082237-46082256 None:intergenic 45.0%
AAAACCAGTGGACACACACT+TGG - chr4_1:46083055-46083074 None:intergenic 45.0%
!!! TTTTCAAAAAAAAAAAAAAA+TGG + chr4_1:46077498-46077517 Msa0550540:intron 5.0%
!! AAAATTAAAGTAAAAAAAAA+GGG + chr4_1:46079319-46079338 Msa0550540:intron 5.0%
CACTTGGTTGCGGTTGAGTT+GGG - chr4_1:46076075-46076094 None:intergenic 50.0%
ATCAGCGTCAATTCTGTCGG+CGG + chr4_1:46076209-46076228 Msa0550540:five_prime_UTR 50.0%
CGACACCGACGTAATTGAGA+GGG - chr4_1:46076256-46076275 None:intergenic 50.0%
GTAACGAGAGAGAGAGAGAG+AGG - chr4_1:46076320-46076339 None:intergenic 50.0%
AAGGGATGGGAAGAAGGAGA+AGG + chr4_1:46076407-46076426 Msa0550540:intron 50.0%
TGGGAAGAAGGAGAAGGTCT+TGG + chr4_1:46076413-46076432 Msa0550540:CDS 50.0%
! GTGTGGTGTCAAATGCCCAT+TGG - chr4_1:46076894-46076913 None:intergenic 50.0%
ACAGCAACCTCAGGATCAAC+AGG - chr4_1:46077223-46077242 None:intergenic 50.0%
TCCAGAGCTACTAGACCACA+AGG + chr4_1:46077244-46077263 Msa0550540:CDS 50.0%
TCCTTGTGGTCTAGTAGCTC+TGG - chr4_1:46077248-46077267 None:intergenic 50.0%
GAGCTACTAGACCACAAGGA+AGG + chr4_1:46077248-46077267 Msa0550540:CDS 50.0%
CATGGCGTGATCCTCGAAAA+GGG + chr4_1:46078034-46078053 Msa0550540:intron 50.0%
GATCCTCGAAAAGGGAAACC+TGG + chr4_1:46078042-46078061 Msa0550540:intron 50.0%
! ACACCAGGTTTCCCTTTTCG+AGG - chr4_1:46078048-46078067 None:intergenic 50.0%
GGAGGGAACTTTATGACACC+AGG - chr4_1:46078063-46078082 None:intergenic 50.0%
TTCAAGGGACACGTCATGGA+GGG - chr4_1:46078080-46078099 None:intergenic 50.0%
TTTCAAGGGACACGTCATGG+AGG - chr4_1:46078081-46078100 None:intergenic 50.0%
!! CCTTTTCAAGGGACACGTCA+TGG - chr4_1:46078084-46078103 None:intergenic 50.0%
CCATGACGTGTCCCTTGAAA+AGG + chr4_1:46078081-46078100 Msa0550540:intron 50.0%
GACGTGTCCCTTGAAAAGGT+TGG + chr4_1:46078085-46078104 Msa0550540:intron 50.0%
CTTGGCGCAACAACTAGACT+TGG - chr4_1:46078214-46078233 None:intergenic 50.0%
! GTTGTATGGGACGGAGTGTT+GGG - chr4_1:46078876-46078895 None:intergenic 50.0%
TGTTGTATGGGACGGAGTGT+TGG - chr4_1:46078877-46078896 None:intergenic 50.0%
!!! CACATCTCGGTGCTAGCTTT+TGG + chr4_1:46079275-46079294 Msa0550540:intron 50.0%
CATGTTCGTAGGGACTGTCA+AGG + chr4_1:46079767-46079786 Msa0550540:intron 50.0%
TGGCGCACACATTGAGGTTA+AGG - chr4_1:46079937-46079956 None:intergenic 50.0%
TGTCTGGCAACAACGCATTG+TGG + chr4_1:46080090-46080109 Msa0550540:intron 50.0%
!! GCTCTTTGGAATGGACTTGG+TGG + chr4_1:46080220-46080239 Msa0550540:intron 50.0%
AGTCGGACAACAACGCATAG+TGG - chr4_1:46080835-46080854 None:intergenic 50.0%
ACTATGCGTTGTTGTCCGAC+TGG + chr4_1:46080834-46080853 Msa0550540:intron 50.0%
CAACAGATGCAGCTACCAGT+CGG - chr4_1:46080852-46080871 None:intergenic 50.0%
CAATGGAGAATTTAGGGGGG+TGG + chr4_1:46081271-46081290 Msa0550540:intron 50.0%
ATGGAGAATTTAGGGGGGTG+GGG + chr4_1:46081273-46081292 Msa0550540:intron 50.0%
! CGAATTTCCCTTGTTGTGGG+TGG + chr4_1:46081333-46081352 Msa0550540:intron 50.0%
GATAGAGCCACCCACAACAA+GGG - chr4_1:46081343-46081362 None:intergenic 50.0%
ATGGCAGAACACGGAAGTAG+AGG - chr4_1:46081512-46081531 None:intergenic 50.0%
GTCCTGATATCCATCCAGAG+TGG + chr4_1:46081618-46081637 Msa0550540:CDS 50.0%
CACCACTCTGGATGGATATC+AGG - chr4_1:46081623-46081642 None:intergenic 50.0%
CTGATATCCATCCAGAGTGG+TGG + chr4_1:46081621-46081640 Msa0550540:CDS 50.0%
GATATCCATCCAGAGTGGTG+GGG + chr4_1:46081623-46081642 Msa0550540:CDS 50.0%
AACTTATTGCCCCACCACTC+TGG - chr4_1:46081635-46081654 None:intergenic 50.0%
! GAGTGGTGGGGCAATAAGTT+TGG + chr4_1:46081635-46081654 Msa0550540:CDS 50.0%
GACAGGACCAAGAAAGTAGC+TGG + chr4_1:46082037-46082056 Msa0550540:CDS 50.0%
TGATGAGGTGGAAATGGTGG+TGG + chr4_1:46082147-46082166 Msa0550540:CDS 50.0%
!! GGTGGAAATGGTGGTGGAAA+AGG + chr4_1:46082153-46082172 Msa0550540:CDS 50.0%
!! GGAAATGGTGGTGGAAAAGG+TGG + chr4_1:46082156-46082175 Msa0550540:CDS 50.0%
TCACTTTATGTACAGGCGCC+TGG + chr4_1:46082299-46082318 Msa0550540:intron 50.0%
CTACCTGTCAGCTGAAGTCA+AGG - chr4_1:46082727-46082746 None:intergenic 50.0%
GACTTCAGCTGACAGGTAGT+CGG + chr4_1:46082728-46082747 Msa0550540:intron 50.0%
CGAAGGGAAAACAGTGCGAT+TGG + chr4_1:46082762-46082781 Msa0550540:CDS 50.0%
GGAGGAGGAAAAAAGGGTTG+AGG + chr4_1:46082846-46082865 Msa0550540:three_prime_UTR 50.0%
ACTTCCAAGTGTGTGTCCAC+TGG + chr4_1:46083048-46083067 Msa0550540:three_prime_UTR 50.0%
! TGAGTTGGGTCGAATCGGGT+CGG - chr4_1:46076061-46076080 None:intergenic 55.0%
!! CGGTTGAGTTGGGTCGAATC+GGG - chr4_1:46076065-46076084 None:intergenic 55.0%
!! GCGGTTGAGTTGGGTCGAAT+CGG - chr4_1:46076066-46076085 None:intergenic 55.0%
CCACTTGGTTGCGGTTGAGT+TGG - chr4_1:46076076-46076095 None:intergenic 55.0%
CCAACTCAACCGCAACCAAG+TGG + chr4_1:46076073-46076092 Msa0550540:five_prime_UTR 55.0%
GCGACACCGACGTAATTGAG+AGG - chr4_1:46076257-46076276 None:intergenic 55.0%
!! TCAATTACGTCGGTGTCGCC+AGG + chr4_1:46076258-46076277 Msa0550540:CDS 55.0%
CTTCATGAGACGGAAAGCGG+CGG - chr4_1:46076288-46076307 None:intergenic 55.0%
GCGCCAGTATCCAATGACAC+AGG + chr4_1:46077054-46077073 Msa0550540:CDS 55.0%
CACGGTTAAGGTGGAAACCG+AGG + chr4_1:46077189-46077208 Msa0550540:CDS 55.0%
GGTTAAGGTGGAAACCGAGG+CGG + chr4_1:46077192-46077211 Msa0550540:CDS 55.0%
ATCAACAGGAACAGCCGCCT+CGG - chr4_1:46077209-46077228 None:intergenic 55.0%
GGCTGTTCCTGTTGATCCTG+AGG + chr4_1:46077213-46077232 Msa0550540:CDS 55.0%
! GCTCTGGATACAGCAACCTC+AGG - chr4_1:46077232-46077251 None:intergenic 55.0%
!! CCTTTTCGAGGATCACGCCA+TGG - chr4_1:46078036-46078055 None:intergenic 55.0%
CCATGGCGTGATCCTCGAAA+AGG + chr4_1:46078033-46078052 Msa0550540:intron 55.0%
CGGAGATGAGGATGTTGCGT+TGG - chr4_1:46078818-46078837 None:intergenic 55.0%
AGTCCTACTCGGAGAGTCGA+GGG - chr4_1:46079238-46079257 None:intergenic 55.0%
TAGTCCTACTCGGAGAGTCG+AGG - chr4_1:46079239-46079258 None:intergenic 55.0%
!! GGAAGAGCGGATTGCTCATC+CGG - chr4_1:46080174-46080193 None:intergenic 55.0%
TGGAGAATTTAGGGGGGTGG+GGG + chr4_1:46081274-46081293 Msa0550540:intron 55.0%
CGATAGAGCCACCCACAACA+AGG - chr4_1:46081344-46081363 None:intergenic 55.0%
TATTGCCCCACCACTCTGGA+TGG - chr4_1:46081631-46081650 None:intergenic 55.0%
GGTCCTTGACTTCAGCTGAC+AGG + chr4_1:46082721-46082740 Msa0550540:intron 55.0%
CAATTCTGTCGGCGGAGCCA+TGG + chr4_1:46076217-46076236 Msa0550540:exon 60.0%
! ACGGAAAGCGGCGGATTTCC+TGG - chr4_1:46076279-46076298 None:intergenic 60.0%
! TGCATGCGTATTCGCCGGCT+TGG - chr4_1:46079883-46079902 None:intergenic 60.0%
GGAGAATTTAGGGGGGTGGG+GGG + chr4_1:46081275-46081294 Msa0550540:intron 60.0%
TTCTGTCGGCGGAGCCATGG+CGG + chr4_1:46076220-46076239 Msa0550540:exon 65.0%
! AGGGATTTCAGGCGCCGCCA+TGG - chr4_1:46076237-46076256 None:intergenic 65.0%
CCTACTCGGAGAGTCGAGGG+AGG - chr4_1:46079235-46079254 None:intergenic 65.0%
CCTCCCTCGACTCTCCGAGT+AGG + chr4_1:46079232-46079251 Msa0550540:intron 65.0%
! GGGGGGGGCGTAGTAGGCTT+GGG - chr4_1:46079708-46079727 None:intergenic 70.0%
! ATTGGGGGGGGGGGCGTAGT+AGG - chr4_1:46079714-46079733 None:intergenic 70.0%
! GGGGGGGGGCGTAGTAGGCT+TGG - chr4_1:46079709-46079728 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 46076024 46083132 46076024 ID=Msa0550540;Name=Msa0550540
chr4_1 mRNA 46076024 46083132 46076024 ID=Msa0550540-mRNA-1;Parent=Msa0550540;Name=Msa0550540-mRNA-1;_AED=0.11;_eAED=0.11;_QI=212|0.9|0.90|1|0.7|0.81|11|303|337
chr4_1 exon 46076024 46076313 46076024 ID=Msa0550540-mRNA-1:exon:12210;Parent=Msa0550540-mRNA-1
chr4_1 exon 46076410 46076463 46076410 ID=Msa0550540-mRNA-1:exon:12211;Parent=Msa0550540-mRNA-1
chr4_1 exon 46077051 46077075 46077051 ID=Msa0550540-mRNA-1:exon:12212;Parent=Msa0550540-mRNA-1
chr4_1 exon 46077182 46077269 46077182 ID=Msa0550540-mRNA-1:exon:12213;Parent=Msa0550540-mRNA-1
chr4_1 exon 46077355 46077421 46077355 ID=Msa0550540-mRNA-1:exon:12214;Parent=Msa0550540-mRNA-1
chr4_1 exon 46078450 46078546 46078450 ID=Msa0550540-mRNA-1:exon:12215;Parent=Msa0550540-mRNA-1
chr4_1 exon 46081609 46081790 46081609 ID=Msa0550540-mRNA-1:exon:12216;Parent=Msa0550540-mRNA-1
chr4_1 exon 46081998 46082237 46081998 ID=Msa0550540-mRNA-1:exon:12217;Parent=Msa0550540-mRNA-1
chr4_1 exon 46082314 46082430 46082314 ID=Msa0550540-mRNA-1:exon:12218;Parent=Msa0550540-mRNA-1
chr4_1 exon 46082736 46083086 46082736 ID=Msa0550540-mRNA-1:exon:12219;Parent=Msa0550540-mRNA-1
chr4_1 exon 46083115 46083132 46083115 ID=Msa0550540-mRNA-1:exon:12220;Parent=Msa0550540-mRNA-1
chr4_1 five_prime_UTR 46076024 46076235 46076024 ID=Msa0550540-mRNA-1:five_prime_utr;Parent=Msa0550540-mRNA-1
chr4_1 CDS 46076236 46076313 46076236 ID=Msa0550540-mRNA-1:cds;Parent=Msa0550540-mRNA-1
chr4_1 CDS 46076410 46076463 46076410 ID=Msa0550540-mRNA-1:cds;Parent=Msa0550540-mRNA-1
chr4_1 CDS 46077051 46077075 46077051 ID=Msa0550540-mRNA-1:cds;Parent=Msa0550540-mRNA-1
chr4_1 CDS 46077182 46077269 46077182 ID=Msa0550540-mRNA-1:cds;Parent=Msa0550540-mRNA-1
chr4_1 CDS 46077355 46077421 46077355 ID=Msa0550540-mRNA-1:cds;Parent=Msa0550540-mRNA-1
chr4_1 CDS 46078450 46078546 46078450 ID=Msa0550540-mRNA-1:cds;Parent=Msa0550540-mRNA-1
chr4_1 CDS 46081609 46081790 46081609 ID=Msa0550540-mRNA-1:cds;Parent=Msa0550540-mRNA-1
chr4_1 CDS 46081998 46082237 46081998 ID=Msa0550540-mRNA-1:cds;Parent=Msa0550540-mRNA-1
chr4_1 CDS 46082314 46082430 46082314 ID=Msa0550540-mRNA-1:cds;Parent=Msa0550540-mRNA-1
chr4_1 CDS 46082736 46082801 46082736 ID=Msa0550540-mRNA-1:cds;Parent=Msa0550540-mRNA-1
chr4_1 three_prime_UTR 46082802 46083086 46082802 ID=Msa0550540-mRNA-1:three_prime_utr;Parent=Msa0550540-mRNA-1
chr4_1 three_prime_UTR 46083115 46083132 46083115 ID=Msa0550540-mRNA-1:three_prime_utr;Parent=Msa0550540-mRNA-1
Gene Sequence

>Msa0550540

ATGGCGGCGCCTGAAATCCCTCTCAATTACGTCGGTGTCGCCAGGAAATCCGCCGCTTTCCGTCTCATGAAGCAAATGGGATGGGAAGAAGGAGAAGGTCTTGGCAAAGAAAAACAAGGGATCAAAGGACACCAAGCGCCAGTATCCAATGACACAGAGAGTAACACGGTTAAGGTGGAAACCGAGGCGGCTGTTCCTGTTGATCCTGAGGTTGCTGTATCCAGAGCTACTAGACCACAAGGAAGATACAAGAAAAGAGAAAGAGGGAAGCTTGTCTCTCATTATTCCTCAAAGGACCTTGAAGGAATTCTTGTAAAAAAGAGTGACATATGTGAGGAGGGTACTGACAATGCTGATGATGAATTGGATTTATCAAAGACACCTGACTTTCAAGATTTTGAAGATGAAGGAAGCAAATGTCCTGATATCCATCCAGAGTGGTGGGGCAATAAGTTTGGGTTTGTCTCTGGTGGATTGCTCGGTGCAGCATCAAAGAAGAAAAAGTCCTCTACATCTGAAATTGCTAAAAGTGGGATGGCGAGAACTCCTTTTTTTGAACAAGATCAAGAAAACCTCTACAATTTAGTCCAAGATAAATCCACAACAGGAAAGCAAGGTCTAGGTATCAAGGACAGGACCAAGAAAGTAGCTGGATGCTATTTTCAGGGTACAAAGACATCATTTGGTAATAGTGACGATGAAGATTCTGCTGACATAGATTCTCTAGAAAACGAAACAGATGATGAGGTGGAAATGGTGGTGGAAAAGGTGGAAAAGATTGTTGAACCCAAAATGAAGCTGAAGAAGTTGTGCAAGCAGATTTTAAACCAAGCGCCTGGAGAATCATTGAAACTGAAACAGCTCAAAGTTCTTATTGAACAACATTCATCTTCAATTTTGTCTGACTTGTCTTCGAAAAAAGAGGCTGTTGCTTACTTGAAGCAAAAGCTGACAGGTAGTCGGAAGTTTTGTATCGAAGGGAAAACAGTGCGATTGGCATCTAAAAGAAGTTGA

Protein sequence

>Msa0550540

MAAPEIPLNYVGVARKSAAFRLMKQMGWEEGEGLGKEKQGIKGHQAPVSNDTESNTVKVETEAAVPVDPEVAVSRATRPQGRYKKRERGKLVSHYSSKDLEGILVKKSDICEEGTDNADDELDLSKTPDFQDFEDEGSKCPDIHPEWWGNKFGFVSGGLLGAASKKKKSSTSEIAKSGMARTPFFEQDQENLYNLVQDKSTTGKQGLGIKDRTKKVAGCYFQGTKTSFGNSDDEDSADIDSLENETDDEVEMVVEKVEKIVEPKMKLKKLCKQILNQAPGESLKLKQLKVLIEQHSSSILSDLSSKKEAVAYLKQKLTGSRKFCIEGKTVRLASKRS*