AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0126840


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0126840 MtrunA17_Chr1g0190101 99.595 247 1 0 1 247 1 247 0.0 508
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0126840 AT4G12590.1 83.333 246 40 1 1 246 1 245 4.30e-154 428

Find 79 sgRNAs with CRISPR-Local

Find 330 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAGCATGATGCTCGAAATT+TGG 0.208439 1_3:-55976111 None:intergenic
TTCTCCAACCTTCTTTCTTA+TGG 0.217168 1_3:-55976386 None:intergenic
TCTGTTGTTATGGTCCTTAT+TGG 0.248259 1_3:+55972085 Msa0126840:CDS
AATCCCTTTATCTGTTGTTA+TGG 0.271631 1_3:+55972075 Msa0126840:CDS
CTCAATCTGTTTGGCTTAAG+AGG 0.312313 1_3:+55975315 Msa0126840:CDS
TTCTTAAATAACATCAGTTC+TGG 0.312638 1_3:-55976354 None:intergenic
TTCAGGTCCATGTTACAAAA+TGG 0.332192 1_3:+55975165 Msa0126840:CDS
TTCCATTGACACAAAGGTTC+AGG 0.334198 1_3:+55975148 Msa0126840:CDS
ACCTTCTTTCTTATGGCTAC+TGG 0.354373 1_3:-55976379 None:intergenic
ATTCATATTTGTACCTTTGA+AGG 0.358366 1_3:-55975564 None:intergenic
AGGACCATAACAACAGATAA+AGG 0.362674 1_3:-55972079 None:intergenic
TAGAATAATGGCGGAAGATC+TGG 0.378579 1_3:+55972021 Msa0126840:exon
GAAGTTTAATTGCTTACCTT+AGG 0.382278 1_3:+55976182 Msa0126840:three_prime_UTR
TGGATACTGCAATCAGAGAT+TGG 0.384123 1_3:+55972047 Msa0126840:CDS
CGGGCACGAAAAGCCTTAGA+AGG 0.386182 1_3:-55972318 None:intergenic
GGATTCGTGGCTTGGCCCTT+TGG 0.388165 1_3:-55972659 None:intergenic
CTATCGAAAGACGAGGTTGC+CGG 0.390954 1_3:+55971764 Msa0126840:five_prime_UTR
AATGGCGGAAGATCTGGTTT+TGG 0.395876 1_3:+55972027 Msa0126840:exon
AGGATTGTTTAGTCTCATCT+TGG 0.396848 1_3:+55975335 Msa0126840:CDS
GTGCTTGTGGATTCGTGGCT+TGG 0.403806 1_3:-55972667 None:intergenic
AGGTACTTTCTCAATCTGTT+TGG 0.404129 1_3:+55975306 Msa0126840:intron
GGATTGTTTAGTCTCATCTT+GGG 0.407530 1_3:+55975336 Msa0126840:CDS
GGTTGGACCTTTGCCATCCT+TGG 0.413923 1_3:+55976230 Msa0126840:three_prime_UTR
TACACGGTTCAATATTTCAT+AGG 0.414844 1_3:-55976413 None:intergenic
TTGACATAACCCAACATGAC+TGG 0.426408 1_3:+55976082 Msa0126840:CDS
ATGCAAATGGGTGGTGGATT+CGG 0.429326 1_3:+55975534 Msa0126840:CDS
AAGTTTAATTGCTTACCTTA+GGG 0.429817 1_3:+55976183 Msa0126840:three_prime_UTR
TATGACGAAGCACACCAATA+AGG 0.439131 1_3:-55972099 None:intergenic
GGATACTGCAATCAGAGATT+GGG 0.444442 1_3:+55972048 Msa0126840:CDS
AACCTTTGTGTCAATGGAAA+AGG 0.444622 1_3:-55975144 None:intergenic
ATCATATCCATGGCCATGTT+CGG 0.446386 1_3:-55972704 None:intergenic
TTGAGAAGAACGCAGAAGCT+TGG 0.453820 1_3:-55972128 None:intergenic
TCTTTCAATGATTATACCTC+AGG 0.457257 1_3:+55972736 Msa0126840:CDS
TTAAACTTCCAATGTCATAT+AGG 0.460285 1_3:-55976168 None:intergenic
TGGCAAAGCCCAGTCATGTT+GGG 0.461277 1_3:-55976091 None:intergenic
GACCTGAACCTTTGTGTCAA+TGG 0.461327 1_3:-55975150 None:intergenic
GGACCATAACAACAGATAAA+GGG 0.462038 1_3:-55972078 None:intergenic
ATTACAATAATAAAGCTTGC+GGG 0.463442 1_3:-55972337 None:intergenic
TTACATTCTATTGTTGCGGT+TGG 0.473394 1_3:+55976213 Msa0126840:three_prime_UTR
GCTACGTCAGCAGTCGCTCC+TGG 0.476096 1_3:+55975214 Msa0126840:CDS
TCAGAGAACATTTGTGCTTG+TGG 0.484350 1_3:-55972680 None:intergenic
CATTTGTGCTTGTGGATTCG+TGG 0.484951 1_3:-55972672 None:intergenic
CAAGCTTTATTATTGTAATG+AGG 0.490585 1_3:+55972341 Msa0126840:CDS
TGTCAATGGAAAAGGTATCT+TGG 0.490898 1_3:-55975136 None:intergenic
AGAGAAACAAGATCGAGAAC+TGG 0.497129 1_3:-55971807 None:intergenic
TACACAAAGAATGATGCAAA+TGG 0.499016 1_3:+55975521 Msa0126840:CDS
GGAGGGAGATGTGTAGTGTA+GGG 0.506217 1_3:-55976497 None:intergenic
AGGAGGGAGATGTGTAGTGT+AGG 0.513520 1_3:-55976498 None:intergenic
GAATGTAAGTGTTTCCCCTA+AGG 0.519333 1_3:-55976198 None:intergenic
TGGTCTGTTATTCGTTCCAA+AGG 0.520176 1_3:+55972643 Msa0126840:CDS
GCCAGTAGCCATAAGAAAGA+AGG 0.529286 1_3:+55976378 Msa0126840:three_prime_UTR
ACACTTACATTCTATTGTTG+CGG 0.533115 1_3:+55976209 Msa0126840:three_prime_UTR
TGACATAACCCAACATGACT+GGG 0.533631 1_3:+55976083 Msa0126840:CDS
ATGTGTAGTGTAGGGCTTCG+CGG 0.546141 1_3:-55976489 None:intergenic
CTCTGATCCGAACATGGCCA+TGG 0.554603 1_3:+55972697 Msa0126840:CDS
TTGGCAAAGCCCAGTCATGT+TGG 0.556486 1_3:-55976092 None:intergenic
GATATCAAAATTGTCAGAGA+AGG 0.558054 1_3:+55972157 Msa0126840:CDS
ATTCGGATTTGATCCTTCAA+AGG 0.558196 1_3:+55975551 Msa0126840:CDS
GGTCTGTTATTCGTTCCAAA+GGG 0.570620 1_3:+55972644 Msa0126840:CDS
GATTGTTTAGTCTCATCTTG+GGG 0.571481 1_3:+55975337 Msa0126840:CDS
AGCTCGGAATTTACGTGCTG+CGG 0.574470 1_3:+55972284 Msa0126840:CDS
ACACAAAGAATGATGCAAAT+GGG 0.575278 1_3:+55975522 Msa0126840:CDS
CATTACAATAATAAAGCTTG+CGG 0.576893 1_3:-55972338 None:intergenic
AGAATGATGCAAATGGGTGG+TGG 0.577037 1_3:+55975528 Msa0126840:CDS
GGCAAGTTATGCTTAGAGCT+CGG 0.581999 1_3:+55972268 Msa0126840:intron
ATATCAAAATTGTCAGAGAA+GGG 0.586701 1_3:+55972158 Msa0126840:CDS
GAACAATACCTATATGACAT+TGG 0.592687 1_3:+55976160 Msa0126840:exon
GTAGCCATAAGAAAGAAGGT+TGG 0.598364 1_3:+55976382 Msa0126840:three_prime_UTR
AATGTTCTCTGATCCGAACA+TGG 0.607119 1_3:+55972691 Msa0126840:CDS
GATCGATTGTGTGACACAGC+CGG 0.617555 1_3:-55971783 None:intergenic
AGTTTAATTGCTTACCTTAG+GGG 0.630701 1_3:+55976184 Msa0126840:three_prime_UTR
CCGCGATGTAGAATCTGATG+AGG 0.637912 1_3:-55971866 None:intergenic
ATTGTTTAGTCTCATCTTGG+GGG 0.651233 1_3:+55975338 Msa0126840:CDS
AGCTAACATCAACTGTGCTG+AGG 0.659434 1_3:-55975194 None:intergenic
GGGCACGAAAAGCCTTAGAA+GGG 0.660230 1_3:-55972317 None:intergenic
AAAGTTTAAACACATATACA+CGG 0.671547 1_3:-55976429 None:intergenic
TGTTAAACTATCGAAAGACG+AGG 0.674238 1_3:+55971757 Msa0126840:five_prime_UTR
CAAAGAATGATGCAAATGGG+TGG 0.748607 1_3:+55975525 Msa0126840:CDS
CCTCATCAGATTCTACATCG+CGG 0.750491 1_3:+55971866 Msa0126840:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAATTTATGTTTCTTATT+TGG + chr1_3:55972402-55972421 Msa0126840:intron 10.0%
!!! TAAATTTATGTTTCTTATTT+GGG + chr1_3:55972403-55972422 Msa0126840:intron 10.0%
!! TATATACAAAAAATTAAAAC+TGG - chr1_3:55973064-55973083 None:intergenic 10.0%
!!! TTGTGTATTATTTTAGATTT+GGG - chr1_3:55971938-55971957 None:intergenic 15.0%
!!! ATTGTGTATTATTTTAGATT+TGG - chr1_3:55971939-55971958 None:intergenic 15.0%
!!! ATATTTTTATGTAGTTTGTT+AGG + chr1_3:55971995-55972014 Msa0126840:intron 15.0%
!!! TTTTTAATTTGATTATGTTG+TGG + chr1_3:55972235-55972254 Msa0126840:intron 15.0%
!!! ATTCTTAGTTTTTTTTCTTA+TGG + chr1_3:55973354-55973373 Msa0126840:intron 15.0%
!!! ATTTTGTAATTCTATATAGT+TGG - chr1_3:55973523-55973542 None:intergenic 15.0%
!!! ATTTTTATTATGATTTGTTC+TGG - chr1_3:55973749-55973768 None:intergenic 15.0%
!! GAACAAATCATAATAAAAAT+AGG + chr1_3:55973749-55973768 Msa0126840:intron 15.0%
!! TAAGATTATAAACTAATTCT+AGG + chr1_3:55973802-55973821 Msa0126840:intron 15.0%
!!! AAGTTTTTTTTTTTTAGCAA+AGG + chr1_3:55975740-55975759 Msa0126840:intron 15.0%
!!! TTTTAAACCTTTTCTTATAA+AGG - chr1_3:55975829-55975848 None:intergenic 15.0%
!!! AAGTTTTTCAGTAAAACAAA+AGG + chr1_3:55971689-55971708 Msa0126840:five_prime_UTR 20.0%
!! TGAAATTGAAATTAGAAACA+AGG - chr1_3:55971906-55971925 None:intergenic 20.0%
!!! TTTGTTAGGTTTTAGAATAA+TGG + chr1_3:55972009-55972028 Msa0126840:exon 20.0%
!! AATTAACAACTTATTGTTTG+AGG + chr1_3:55972457-55972476 Msa0126840:intron 20.0%
!!! TGTTTGTCAATTTTTGTTAA+AGG + chr1_3:55972616-55972635 Msa0126840:intron 20.0%
!!! CAATTTTTGTTAAAGGAAAA+TGG + chr1_3:55972623-55972642 Msa0126840:intron 20.0%
!!! GTTATTATGTCATTAGATTT+TGG + chr1_3:55972784-55972803 Msa0126840:intron 20.0%
!!! ATTTTTTGTATATATACGGT+TGG + chr1_3:55973070-55973089 Msa0126840:intron 20.0%
!! GAAAAATCAGAGAATAAATT+AGG + chr1_3:55973580-55973599 Msa0126840:intron 20.0%
!!! ATAATCTTAAAGTATCTCTT+AGG - chr1_3:55973791-55973810 None:intergenic 20.0%
!!! AGATACTCTTTTCTTTTTTA+TGG + chr1_3:55973835-55973854 Msa0126840:intron 20.0%
!! TAAAACTATAATTTCCAAGT+TGG - chr1_3:55975623-55975642 None:intergenic 20.0%
!!! TTTTCTTAATCTTGTTTTCA+GGG + chr1_3:55976036-55976055 Msa0126840:intron 20.0%
!! AAAGTTTAAACACATATACA+CGG - chr1_3:55976432-55976451 None:intergenic 20.0%
! ATATCAAAATTGTCAGAGAA+GGG + chr1_3:55972158-55972177 Msa0126840:CDS 25.0%
!!! TTATGTTGTGGTTTTAATAC+AGG + chr1_3:55972247-55972266 Msa0126840:intron 25.0%
! ATTACAATAATAAAGCTTGC+GGG - chr1_3:55972340-55972359 None:intergenic 25.0%
! CATTACAATAATAAAGCTTG+CGG - chr1_3:55972341-55972360 None:intergenic 25.0%
!!! CAAGCTTTATTATTGTAATG+AGG + chr1_3:55972341-55972360 Msa0126840:CDS 25.0%
!!! AGAAAACCTTTAAAACTCAT+CGG + chr1_3:55972508-55972527 Msa0126840:intron 25.0%
!! ATTTTTCTTCATCATATCCA+TGG - chr1_3:55972717-55972736 None:intergenic 25.0%
! TTAGTATGGCAATTCATAAT+TGG - chr1_3:55972842-55972861 None:intergenic 25.0%
! GTAAACAATACAAGTTAGTA+TGG - chr1_3:55972856-55972875 None:intergenic 25.0%
! TTGTATTGTTTACTCTTGTT+GGG + chr1_3:55972863-55972882 Msa0126840:intron 25.0%
! ATATCTTGACTTATTGTCTA+TGG + chr1_3:55973113-55973132 Msa0126840:intron 25.0%
! ATATCAACTAATCAAACAGA+CGG + chr1_3:55973169-55973188 Msa0126840:intron 25.0%
! AGAATGGGTGATAAAATAAA+AGG + chr1_3:55973455-55973474 Msa0126840:intron 25.0%
! GAATGGGTGATAAAATAAAA+GGG + chr1_3:55973456-55973475 Msa0126840:intron 25.0%
! AATGGGTGATAAAATAAAAG+GGG + chr1_3:55973457-55973476 Msa0126840:intron 25.0%
!!! AATAAATTAGGTTGAAGTTG+TGG + chr1_3:55973592-55973611 Msa0126840:intron 25.0%
!!! GTTGTGGTATTTTAGATAAA+AGG + chr1_3:55973608-55973627 Msa0126840:intron 25.0%
!!! TGGTATTTTAGATAAAAGGA+GGG + chr1_3:55973612-55973631 Msa0126840:intron 25.0%
!!! ATAAGGCTCAATTTTTAAGT+AGG + chr1_3:55973936-55973955 Msa0126840:intron 25.0%
! AAAGAGGAAAAATCTAGTAT+GGG - chr1_3:55974057-55974076 None:intergenic 25.0%
! ATGTATAACTTTACCAAACT+TGG + chr1_3:55974507-55974526 Msa0126840:intron 25.0%
!! TTTACATAAGTCTTGTATAC+TGG + chr1_3:55974812-55974831 Msa0126840:intron 25.0%
! AAATTCTATTACTGAGTAAC+AGG + chr1_3:55974870-55974889 Msa0126840:intron 25.0%
! TTTCCATTATAACTGCAATT+TGG + chr1_3:55975443-55975462 Msa0126840:intron 25.0%
! TATCCAAATTGCAGTTATAA+TGG - chr1_3:55975449-55975468 None:intergenic 25.0%
! ATTCATATTTGTACCTTTGA+AGG - chr1_3:55975567-55975586 None:intergenic 25.0%
!!! ATAATTTTGAAGATCCAACT+TGG + chr1_3:55975606-55975625 Msa0126840:intron 25.0%
!! TAAACCTTTTCTTATAAAGG+TGG - chr1_3:55975826-55975845 None:intergenic 25.0%
! GGTTTAAAAAGAATAGTTCT+AGG + chr1_3:55975840-55975859 Msa0126840:intron 25.0%
!!! CTTTTCTTAATCTTGTTTTC+AGG + chr1_3:55976035-55976054 Msa0126840:intron 25.0%
! TTAAACTTCCAATGTCATAT+AGG - chr1_3:55976171-55976190 None:intergenic 25.0%
! AAGTTTAATTGCTTACCTTA+GGG + chr1_3:55976183-55976202 Msa0126840:three_prime_UTR 25.0%
! TTCTTAAATAACATCAGTTC+TGG - chr1_3:55976357-55976376 None:intergenic 25.0%
!!! GTTAGGTTTTAGAATAATGG+CGG + chr1_3:55972012-55972031 Msa0126840:exon 30.0%
AATCCCTTTATCTGTTGTTA+TGG + chr1_3:55972075-55972094 Msa0126840:CDS 30.0%
!! TCTCTGACAATTTTGATATC+AGG - chr1_3:55972157-55972176 None:intergenic 30.0%
GATATCAAAATTGTCAGAGA+AGG + chr1_3:55972157-55972176 Msa0126840:CDS 30.0%
!! GTGTATTCTAGTTTGATAGA+AGG + chr1_3:55972378-55972397 Msa0126840:intron 30.0%
TATTTGGGAGAACAATGTAA+TGG + chr1_3:55972418-55972437 Msa0126840:intron 30.0%
!! AATGTAATGGCTTTTGTTGT+GGG + chr1_3:55972431-55972450 Msa0126840:intron 30.0%
!! TAACTTCCGATGAGTTTTAA+AGG - chr1_3:55972517-55972536 None:intergenic 30.0%
CATTTGTCTAACCAATTCAA+CGG + chr1_3:55972584-55972603 Msa0126840:intron 30.0%
TCTTTCAATGATTATACCTC+AGG + chr1_3:55972736-55972755 Msa0126840:CDS 30.0%
CTTGTATTGTTTACTCTTGT+TGG + chr1_3:55972862-55972881 Msa0126840:intron 30.0%
GTAGTGTCATAATGTTAGAT+TGG + chr1_3:55972966-55972985 Msa0126840:intron 30.0%
AGATATATACGTGCTTATTC+AGG - chr1_3:55973099-55973118 None:intergenic 30.0%
! ATCAAACAGACGGTTTTTAT+TGG + chr1_3:55973179-55973198 Msa0126840:intron 30.0%
!! CGGTTTTTATTGGTATTGAA+AGG + chr1_3:55973189-55973208 Msa0126840:intron 30.0%
ACATATGATAGAATACCTAG+TGG + chr1_3:55973212-55973231 Msa0126840:intron 30.0%
CATATGATAGAATACCTAGT+GGG + chr1_3:55973213-55973232 Msa0126840:intron 30.0%
CTATCAAAGAAATGTACCAA+GGG + chr1_3:55973250-55973269 Msa0126840:intron 30.0%
TATCAAAGAAATGTACCAAG+GGG + chr1_3:55973251-55973270 Msa0126840:intron 30.0%
AGATCATAGACAGTCATAAA+TGG + chr1_3:55973431-55973450 Msa0126840:intron 30.0%
GATCATAGACAGTCATAAAT+GGG + chr1_3:55973432-55973451 Msa0126840:intron 30.0%
!! TTGGAAATTGTTTGCTTTTG+AGG - chr1_3:55973504-55973523 None:intergenic 30.0%
! TCTGATTTTTCCTATGAGTT+GGG - chr1_3:55973571-55973590 None:intergenic 30.0%
!! GTGGTATTTTAGATAAAAGG+AGG + chr1_3:55973611-55973630 Msa0126840:intron 30.0%
TCCAAAACCTAAGTACTATA+AGG + chr1_3:55973919-55973938 Msa0126840:intron 30.0%
! AATTGAGCCTTATAGTACTT+AGG - chr1_3:55973929-55973948 None:intergenic 30.0%
CTATCATAGATTACTGCTAT+AGG + chr1_3:55973963-55973982 Msa0126840:intron 30.0%
AGTGAAACTTCAAAATCCAA+CGG - chr1_3:55974016-55974035 None:intergenic 30.0%
GAAAGAGGAAAAATCTAGTA+TGG - chr1_3:55974058-55974077 None:intergenic 30.0%
AAAAGAGACACAAATATTGC+TGG - chr1_3:55974354-55974373 None:intergenic 30.0%
ATTTCATGGTCGTAAAAATG+GGG - chr1_3:55974473-55974492 None:intergenic 30.0%
CATTTCATGGTCGTAAAAAT+GGG - chr1_3:55974474-55974493 None:intergenic 30.0%
AGTTATACATATGTATGCTC+TGG - chr1_3:55974497-55974516 None:intergenic 30.0%
! TGTTAAGTTTGTTCCAAGTT+TGG - chr1_3:55974523-55974542 None:intergenic 30.0%
GATTGAATAGGATTCAATCA+TGG - chr1_3:55974700-55974719 None:intergenic 30.0%
CAGATTTCTTCATAGTATCA+GGG - chr1_3:55974722-55974741 None:intergenic 30.0%
TCAGATTTCTTCATAGTATC+AGG - chr1_3:55974723-55974742 None:intergenic 30.0%
!!! AAGTTTTAGTTCAACAACTG+CGG - chr1_3:55974898-55974917 None:intergenic 30.0%
! GTCTATTCCATTTTGTAACA+TGG - chr1_3:55975175-55975194 None:intergenic 30.0%
CTATGAAAAAGAAGATTACC+AGG - chr1_3:55975235-55975254 None:intergenic 30.0%
AATTGTCATGATTGCATTTC+AGG + chr1_3:55975286-55975305 Msa0126840:intron 30.0%
CACTCGTTACAAATTATGAT+TGG + chr1_3:55975471-55975490 Msa0126840:intron 30.0%
TACACAAAGAATGATGCAAA+TGG + chr1_3:55975521-55975540 Msa0126840:CDS 30.0%
ACACAAAGAATGATGCAAAT+GGG + chr1_3:55975522-55975541 Msa0126840:CDS 30.0%
TACAAAGAGAAGCAAAATGT+AGG + chr1_3:55975791-55975810 Msa0126840:intron 30.0%
! TATTTGAAACTGCAAAGCTA+AGG - chr1_3:55975944-55975963 None:intergenic 30.0%
GAACAATACCTATATGACAT+TGG + chr1_3:55976160-55976179 Msa0126840:exon 30.0%
GAAGTTTAATTGCTTACCTT+AGG + chr1_3:55976182-55976201 Msa0126840:three_prime_UTR 30.0%
AGTTTAATTGCTTACCTTAG+GGG + chr1_3:55976184-55976203 Msa0126840:three_prime_UTR 30.0%
ACACTTACATTCTATTGTTG+CGG + chr1_3:55976209-55976228 Msa0126840:three_prime_UTR 30.0%
! ATCTTCAATATCTTTTGCCA+AGG - chr1_3:55976250-55976269 None:intergenic 30.0%
TACACGGTTCAATATTTCAT+AGG - chr1_3:55976416-55976435 None:intergenic 30.0%
TGTTAAACTATCGAAAGACG+AGG + chr1_3:55971757-55971776 Msa0126840:five_prime_UTR 35.0%
GGACCATAACAACAGATAAA+GGG - chr1_3:55972081-55972100 None:intergenic 35.0%
AGGACCATAACAACAGATAA+AGG - chr1_3:55972082-55972101 None:intergenic 35.0%
TCTGTTGTTATGGTCCTTAT+TGG + chr1_3:55972085-55972104 Msa0126840:CDS 35.0%
! GGCTAATTTTATCCCTTCTA+AGG + chr1_3:55972305-55972324 Msa0126840:CDS 35.0%
! CAATGTAATGGCTTTTGTTG+TGG + chr1_3:55972430-55972449 Msa0126840:intron 35.0%
CAATTAGTTCACCGTTGAAT+TGG - chr1_3:55972598-55972617 None:intergenic 35.0%
TAATCTATTCTGAACACCTG+AGG - chr1_3:55972755-55972774 None:intergenic 35.0%
!! TGGGTGAACTTTTTCTTTTC+TGG + chr1_3:55972904-55972923 Msa0126840:CDS 35.0%
! TTCTTTTCTGGATTTGTAGC+AGG + chr1_3:55972916-55972935 Msa0126840:CDS 35.0%
CTAACATTATGACACTACGA+GGG - chr1_3:55972964-55972983 None:intergenic 35.0%
TCTAACATTATGACACTACG+AGG - chr1_3:55972965-55972984 None:intergenic 35.0%
GCTATCAAAGAAATGTACCA+AGG + chr1_3:55973249-55973268 Msa0126840:intron 35.0%
! ACAACTAGTTTGAGCATACA+AGG + chr1_3:55973276-55973295 Msa0126840:intron 35.0%
TAAGAATCAAAGTTGACCCT+TGG - chr1_3:55973341-55973360 None:intergenic 35.0%
! TGTGTCGAGATAACATCTTT+TGG - chr1_3:55973401-55973420 None:intergenic 35.0%
ACAGTCATAAATGGGAGAAT+GGG + chr1_3:55973440-55973459 Msa0126840:intron 35.0%
! CTCTGATTTTTCCTATGAGT+TGG - chr1_3:55973572-55973591 None:intergenic 35.0%
! AGGGATTAGTGTTTAGTCTT+CGG - chr1_3:55973694-55973713 None:intergenic 35.0%
AAACACTAATCCCTGTTTAC+AGG + chr1_3:55973700-55973719 Msa0126840:intron 35.0%
AACACTAATCCCTGTTTACA+GGG + chr1_3:55973701-55973720 Msa0126840:intron 35.0%
! GCCTTATAGTACTTAGGTTT+TGG - chr1_3:55973923-55973942 None:intergenic 35.0%
TCATAGATTACTGCTATAGG+TGG + chr1_3:55973966-55973985 Msa0126840:intron 35.0%
TGTTTGACAACATTGGGATT+GGG - chr1_3:55974083-55974102 None:intergenic 35.0%
AACCTCTGTTTGACAACATT+GGG - chr1_3:55974089-55974108 None:intergenic 35.0%
TAACCTCTGTTTGACAACAT+TGG - chr1_3:55974090-55974109 None:intergenic 35.0%
! TACGAAGTTTTGCCAAATAG+AGG + chr1_3:55974179-55974198 Msa0126840:intron 35.0%
! TTGTGGATTGCAGAAAATAG+CGG - chr1_3:55974251-55974270 None:intergenic 35.0%
GAAAGCAATGTTGTCAATTG+TGG - chr1_3:55974268-55974287 None:intergenic 35.0%
TTTCATGGTCGTAAAAATGG+GGG - chr1_3:55974472-55974491 None:intergenic 35.0%
GCATTTCATGGTCGTAAAAA+TGG - chr1_3:55974475-55974494 None:intergenic 35.0%
ACAAACTTAACACTGTGTTG+TGG + chr1_3:55974531-55974550 Msa0126840:intron 35.0%
! TTGTTATTGGCTATTGCTGA+AGG + chr1_3:55974629-55974648 Msa0126840:intron 35.0%
ATAGGATTCAATCATGGCTT+AGG - chr1_3:55974694-55974713 None:intergenic 35.0%
CATAGTATCAGGGATTGAAT+AGG - chr1_3:55974712-55974731 None:intergenic 35.0%
ATTTGAGAAGCAGATAACAG+AGG - chr1_3:55975096-55975115 None:intergenic 35.0%
!! TGTCAATGGAAAAGGTATCT+TGG - chr1_3:55975139-55975158 None:intergenic 35.0%
! TACCTTTTCCATTGACACAA+AGG + chr1_3:55975142-55975161 Msa0126840:CDS 35.0%
AACCTTTGTGTCAATGGAAA+AGG - chr1_3:55975147-55975166 None:intergenic 35.0%
TTCAGGTCCATGTTACAAAA+TGG + chr1_3:55975165-55975184 Msa0126840:CDS 35.0%
TTACCTGTTTCACTCTTACT+TGG + chr1_3:55975259-55975278 Msa0126840:intron 35.0%
TACCTGTTTCACTCTTACTT+GGG + chr1_3:55975260-55975279 Msa0126840:intron 35.0%
AGGTACTTTCTCAATCTGTT+TGG + chr1_3:55975306-55975325 Msa0126840:intron 35.0%
AGGATTGTTTAGTCTCATCT+TGG + chr1_3:55975335-55975354 Msa0126840:CDS 35.0%
GGATTGTTTAGTCTCATCTT+GGG + chr1_3:55975336-55975355 Msa0126840:CDS 35.0%
GATTGTTTAGTCTCATCTTG+GGG + chr1_3:55975337-55975356 Msa0126840:CDS 35.0%
ATTGTTTAGTCTCATCTTGG+GGG + chr1_3:55975338-55975357 Msa0126840:CDS 35.0%
ATTCGGATTTGATCCTTCAA+AGG + chr1_3:55975551-55975570 Msa0126840:CDS 35.0%
GGATATTTCCTCTTGAGATA+TGG - chr1_3:55975675-55975694 None:intergenic 35.0%
CTCAAGAGGAAATATCCATA+TGG + chr1_3:55975678-55975697 Msa0126840:intron 35.0%
AAGAGGAAATATCCATATGG+AGG + chr1_3:55975681-55975700 Msa0126840:intron 35.0%
TGTTAGAAACTACAGTAGGT+AGG - chr1_3:55975996-55976015 None:intergenic 35.0%
! GCTTTGTTAGAAACTACAGT+AGG - chr1_3:55976000-55976019 None:intergenic 35.0%
TTACATTCTATTGTTGCGGT+TGG + chr1_3:55976213-55976232 Msa0126840:three_prime_UTR 35.0%
! TCAATATCTTTTGCCAAGGA+TGG - chr1_3:55976246-55976265 None:intergenic 35.0%
TTCTCCAACCTTCTTTCTTA+TGG - chr1_3:55976389-55976408 None:intergenic 35.0%
AGAGAAACAAGATCGAGAAC+TGG - chr1_3:55971810-55971829 None:intergenic 40.0%
! TAGAATAATGGCGGAAGATC+TGG + chr1_3:55972021-55972040 Msa0126840:exon 40.0%
TGGATACTGCAATCAGAGAT+TGG + chr1_3:55972047-55972066 Msa0126840:CDS 40.0%
GGATACTGCAATCAGAGATT+GGG + chr1_3:55972048-55972067 Msa0126840:CDS 40.0%
TATGACGAAGCACACCAATA+AGG - chr1_3:55972102-55972121 None:intergenic 40.0%
TAACTCTCTGACTCTATCAC+AGG + chr1_3:55972538-55972557 Msa0126840:intron 40.0%
TGGTCTGTTATTCGTTCCAA+AGG + chr1_3:55972643-55972662 Msa0126840:CDS 40.0%
GGTCTGTTATTCGTTCCAAA+GGG + chr1_3:55972644-55972663 Msa0126840:CDS 40.0%
TCAGAGAACATTTGTGCTTG+TGG - chr1_3:55972683-55972702 None:intergenic 40.0%
AATGTTCTCTGATCCGAACA+TGG + chr1_3:55972691-55972710 Msa0126840:CDS 40.0%
ATCATATCCATGGCCATGTT+CGG - chr1_3:55972707-55972726 None:intergenic 40.0%
!! GCAGACTCTTACTTTTGCTT+GGG + chr1_3:55972885-55972904 Msa0126840:intron 40.0%
CAATCTTTGTAGCAAGCAGA+TGG - chr1_3:55973142-55973161 None:intergenic 40.0%
! TCTGCTTGCTACAAAGATTG+AGG + chr1_3:55973142-55973161 Msa0126840:intron 40.0%
! CTGCTTGCTACAAAGATTGA+GGG + chr1_3:55973143-55973162 Msa0126840:intron 40.0%
CTAAATGTGAGTAACCCACT+AGG - chr1_3:55973230-55973249 None:intergenic 40.0%
GGTACACACTTATAGCTGTT+GGG - chr1_3:55973320-55973339 None:intergenic 40.0%
TGGTACACACTTATAGCTGT+TGG - chr1_3:55973321-55973340 None:intergenic 40.0%
ACAGCTATAAGTGTGTACCA+AGG + chr1_3:55973321-55973340 Msa0126840:intron 40.0%
CAGCTATAAGTGTGTACCAA+GGG + chr1_3:55973322-55973341 Msa0126840:intron 40.0%
GACTGTCTATGATCTGCAAA+AGG - chr1_3:55973426-55973445 None:intergenic 40.0%
GACAGTCATAAATGGGAGAA+TGG + chr1_3:55973439-55973458 Msa0126840:intron 40.0%
CATTCACAATCCCAACTCAT+AGG + chr1_3:55973558-55973577 Msa0126840:intron 40.0%
TCTGTGTATCCCTGTAAACA+GGG - chr1_3:55973713-55973732 None:intergenic 40.0%
!! GGTTCATGATGGATCATGTT+TGG + chr1_3:55973987-55974006 Msa0126840:intron 40.0%
GAGGAAAAATCTAGTATGGG+AGG - chr1_3:55974054-55974073 None:intergenic 40.0%
GTTTGACAACATTGGGATTG+GGG - chr1_3:55974082-55974101 None:intergenic 40.0%
CTGTTTGACAACATTGGGAT+TGG - chr1_3:55974084-55974103 None:intergenic 40.0%
ATCCCAATGTTGTCAAACAG+AGG + chr1_3:55974084-55974103 Msa0126840:intron 40.0%
TCAAACAGAGGTTATAGCAG+TGG + chr1_3:55974096-55974115 Msa0126840:intron 40.0%
TGAATTTCGCTATGCTAGAG+AGG - chr1_3:55974222-55974241 None:intergenic 40.0%
GAGACACAAATATTGCTGGA+AGG - chr1_3:55974350-55974369 None:intergenic 40.0%
TTCATGGTCGTAAAAATGGG+GGG - chr1_3:55974471-55974490 None:intergenic 40.0%
ATGTATGCTCTGGCATTTCA+TGG - chr1_3:55974487-55974506 None:intergenic 40.0%
CTTAATTCTGGTAGCTATCG+TGG - chr1_3:55974597-55974616 None:intergenic 40.0%
!! CCTCTGTTCTAGCTTAATTC+TGG - chr1_3:55974609-55974628 None:intergenic 40.0%
CCAGAATTAAGCTAGAACAG+AGG + chr1_3:55974606-55974625 Msa0126840:intron 40.0%
GCTAGAACAGAGGTTGTTAT+TGG + chr1_3:55974616-55974635 Msa0126840:intron 40.0%
TGAGATGAAGTAGCAGATTG+AGG + chr1_3:55974666-55974685 Msa0126840:intron 40.0%
TTTGTCAGAGAACGAGTTCA+AGG + chr1_3:55974755-55974774 Msa0126840:intron 40.0%
TTGTCAGAGAACGAGTTCAA+GGG + chr1_3:55974756-55974775 Msa0126840:intron 40.0%
! AACTAAAGCCTTTTCCTGCA+AGG - chr1_3:55975025-55975044 None:intergenic 40.0%
AACAGAGGCAAGGAATACAA+GGG - chr1_3:55975081-55975100 None:intergenic 40.0%
TAACAGAGGCAAGGAATACA+AGG - chr1_3:55975082-55975101 None:intergenic 40.0%
TTCCATTGACACAAAGGTTC+AGG + chr1_3:55975148-55975167 Msa0126840:CDS 40.0%
AACCCAAGTAAGAGTGAAAC+AGG - chr1_3:55975265-55975284 None:intergenic 40.0%
! CTCAATCTGTTTGGCTTAAG+AGG + chr1_3:55975315-55975334 Msa0126840:CDS 40.0%
CAAAGAATGATGCAAATGGG+TGG + chr1_3:55975525-55975544 Msa0126840:CDS 40.0%
CCTCTTGAGATATGGAGAAA+GGG - chr1_3:55975667-55975686 None:intergenic 40.0%
TCCTCTTGAGATATGGAGAA+AGG - chr1_3:55975668-55975687 None:intergenic 40.0%
TAAGCTACAGAACCTCCATA+TGG - chr1_3:55975696-55975715 None:intergenic 40.0%
GCTGCCACCTTTATAAGAAA+AGG + chr1_3:55975819-55975838 Msa0126840:intron 40.0%
AATTAGCCAATTTCCCAGGA+AGG - chr1_3:55975868-55975887 None:intergenic 40.0%
GGAAATTGGCTAATTGCCTT+GGG + chr1_3:55975873-55975892 Msa0126840:intron 40.0%
TTGGGATGCTATACAAGCAA+GGG + chr1_3:55975891-55975910 Msa0126840:intron 40.0%
AAATGTCGAACTGTGACAAG+TGG + chr1_3:55975968-55975987 Msa0126840:intron 40.0%
TTGACATAACCCAACATGAC+TGG + chr1_3:55976082-55976101 Msa0126840:CDS 40.0%
TGACATAACCCAACATGACT+GGG + chr1_3:55976083-55976102 Msa0126840:CDS 40.0%
TCAGCATGATGCTCGAAATT+TGG - chr1_3:55976114-55976133 None:intergenic 40.0%
GAATGTAAGTGTTTCCCCTA+AGG - chr1_3:55976201-55976220 None:intergenic 40.0%
ACCTTCTTTCTTATGGCTAC+TGG - chr1_3:55976382-55976401 None:intergenic 40.0%
GTAGCCATAAGAAAGAAGGT+TGG + chr1_3:55976382-55976401 Msa0126840:three_prime_UTR 40.0%
CCTCATCAGATTCTACATCG+CGG + chr1_3:55971866-55971885 Msa0126840:five_prime_UTR 45.0%
!! AATGGCGGAAGATCTGGTTT+TGG + chr1_3:55972027-55972046 Msa0126840:exon 45.0%
TTGAGAAGAACGCAGAAGCT+TGG - chr1_3:55972131-55972150 None:intergenic 45.0%
GGCAAGTTATGCTTAGAGCT+CGG + chr1_3:55972268-55972287 Msa0126840:intron 45.0%
CATTTGTGCTTGTGGATTCG+TGG - chr1_3:55972675-55972694 None:intergenic 45.0%
!! GGCAGACTCTTACTTTTGCT+TGG + chr1_3:55972884-55972903 Msa0126840:intron 45.0%
TCAAACTAGTTGTGACCCCT+TGG - chr1_3:55973269-55973288 None:intergenic 45.0%
GTCTGTGTATCCCTGTAAAC+AGG - chr1_3:55973714-55973733 None:intergenic 45.0%
CTGCTATAGGTGGTTCATGA+TGG + chr1_3:55973976-55973995 Msa0126840:intron 45.0%
TATAGCAGTGGTATCTGCTC+TGG + chr1_3:55974108-55974127 Msa0126840:intron 45.0%
! GTGCTGCTATAGCCTCTATT+TGG - chr1_3:55974194-55974213 None:intergenic 45.0%
! TCTTTTGTGTGTCCAGACGT+TGG + chr1_3:55974368-55974387 Msa0126840:intron 45.0%
! TATCGTGGCCAATCCTTTTG+TGG - chr1_3:55974582-55974601 None:intergenic 45.0%
TATCGTTGCCTTGCAGGAAA+AGG + chr1_3:55975014-55975033 Msa0126840:intron 45.0%
AGAAGCAGATAACAGAGGCA+AGG - chr1_3:55975091-55975110 None:intergenic 45.0%
GACCTGAACCTTTGTGTCAA+TGG - chr1_3:55975153-55975172 None:intergenic 45.0%
AGCTAACATCAACTGTGCTG+AGG - chr1_3:55975197-55975216 None:intergenic 45.0%
CTCATCTTGGGGGAAGAAAA+TGG + chr1_3:55975348-55975367 Msa0126840:CDS 45.0%
AGAATGATGCAAATGGGTGG+TGG + chr1_3:55975528-55975547 Msa0126840:CDS 45.0%
!! ATGCAAATGGGTGGTGGATT+CGG + chr1_3:55975534-55975553 Msa0126840:CDS 45.0%
AGATATGGAGAAAGGGAGGA+GGG - chr1_3:55975660-55975679 None:intergenic 45.0%
CTTGAGATATGGAGAAAGGG+AGG - chr1_3:55975664-55975683 None:intergenic 45.0%
CCCTTTCTCCATATCTCAAG+AGG + chr1_3:55975664-55975683 Msa0126840:intron 45.0%
GTAGCTTAACTACTTCGCTG+AGG + chr1_3:55975708-55975727 Msa0126840:intron 45.0%
!! AATAGTTCTAGGCTCCTTCC+TGG + chr1_3:55975851-55975870 Msa0126840:intron 45.0%
!! ATAGTTCTAGGCTCCTTCCT+GGG + chr1_3:55975852-55975871 Msa0126840:intron 45.0%
AGGCAATTAGCCAATTTCCC+AGG - chr1_3:55975872-55975891 None:intergenic 45.0%
GGGAAATTGGCTAATTGCCT+TGG + chr1_3:55975872-55975891 Msa0126840:intron 45.0%
CTTGCTTGTATAGCATCCCA+AGG - chr1_3:55975892-55975911 None:intergenic 45.0%
CTTGGGATGCTATACAAGCA+AGG + chr1_3:55975890-55975909 Msa0126840:intron 45.0%
TGGGATGCTATACAAGCAAG+GGG + chr1_3:55975892-55975911 Msa0126840:intron 45.0%
CTATACAAGCAAGGGGTTCA+GGG + chr1_3:55975899-55975918 Msa0126840:intron 45.0%
! TCTTTTGCCAAGGATGGCAA+AGG - chr1_3:55976240-55976259 None:intergenic 45.0%
GCCAGTAGCCATAAGAAAGA+AGG + chr1_3:55976378-55976397 Msa0126840:three_prime_UTR 45.0%
!!! TTTAATTTTTTGTATATATA+CGG + chr1_3:55973066-55973085 Msa0126840:intron 5.0%
CTATCGAAAGACGAGGTTGC+CGG + chr1_3:55971764-55971783 Msa0126840:five_prime_UTR 50.0%
GATCGATTGTGTGACACAGC+CGG - chr1_3:55971786-55971805 None:intergenic 50.0%
CCGCGATGTAGAATCTGATG+AGG - chr1_3:55971869-55971888 None:intergenic 50.0%
AGCTCGGAATTTACGTGCTG+CGG + chr1_3:55972284-55972303 Msa0126840:CDS 50.0%
GGGCACGAAAAGCCTTAGAA+GGG - chr1_3:55972320-55972339 None:intergenic 50.0%
GGATCATGTTTGGTTGCCGT+TGG + chr1_3:55973997-55974016 Msa0126840:intron 50.0%
CATTGGGATTGGGGAGAAAG+AGG - chr1_3:55974073-55974092 None:intergenic 50.0%
TGGTATCTGCTCTGGCATAG+TGG + chr1_3:55974116-55974135 Msa0126840:intron 50.0%
! AACTGTTGGTTAGGGTGGCT+GGG - chr1_3:55974396-55974415 None:intergenic 50.0%
! AGAGCAACTGTTGGTTAGGG+TGG - chr1_3:55974401-55974420 None:intergenic 50.0%
ACCCTAACCAACAGTTGCTC+TGG + chr1_3:55974400-55974419 Msa0126840:intron 50.0%
! GCCAGAGCAACTGTTGGTTA+GGG - chr1_3:55974404-55974423 None:intergenic 50.0%
! TGCCAGAGCAACTGTTGGTT+AGG - chr1_3:55974405-55974424 None:intergenic 50.0%
TCAACTGCCAGAGCAACTGT+TGG - chr1_3:55974410-55974429 None:intergenic 50.0%
TCGTAAAAATGGGGGGCAGA+GGG - chr1_3:55974464-55974483 None:intergenic 50.0%
TGTTCCTCCACTGCCACAAA+AGG + chr1_3:55974566-55974585 Msa0126840:intron 50.0%
! CAATCCTTTTGTGGCAGTGG+AGG - chr1_3:55974573-55974592 None:intergenic 50.0%
CTCCACTGCCACAAAAGGAT+TGG + chr1_3:55974571-55974590 Msa0126840:intron 50.0%
ACTCGATATCGTTGCCTTGC+AGG + chr1_3:55975008-55975027 Msa0126840:intron 50.0%
GAGATATGGAGAAAGGGAGG+AGG - chr1_3:55975661-55975680 None:intergenic 50.0%
TAGGCTCCTTCCTGGGAAAT+TGG + chr1_3:55975859-55975878 Msa0126840:intron 50.0%
GCTATACAAGCAAGGGGTTC+AGG + chr1_3:55975898-55975917 Msa0126840:intron 50.0%
TGGCAAAGCCCAGTCATGTT+GGG - chr1_3:55976094-55976113 None:intergenic 50.0%
TTGGCAAAGCCCAGTCATGT+TGG - chr1_3:55976095-55976114 None:intergenic 50.0%
ATGTGTAGTGTAGGGCTTCG+CGG - chr1_3:55976492-55976511 None:intergenic 50.0%
CGGGCACGAAAAGCCTTAGA+AGG - chr1_3:55972321-55972340 None:intergenic 55.0%
GTGCTTGTGGATTCGTGGCT+TGG - chr1_3:55972670-55972689 None:intergenic 55.0%
CTCTGATCCGAACATGGCCA+TGG + chr1_3:55972697-55972716 Msa0126840:CDS 55.0%
GGAGGAAGGGAAGAAGGAAG+AGG - chr1_3:55974294-55974313 None:intergenic 55.0%
ACTCGCAACGGCCAGGTAAA+GGG - chr1_3:55974325-55974344 None:intergenic 55.0%
TGCTGGAAGGAGACTCGCAA+CGG - chr1_3:55974337-55974356 None:intergenic 55.0%
! CAACTGTTGGTTAGGGTGGC+TGG - chr1_3:55974397-55974416 None:intergenic 55.0%
AAAAATGGGGGGCAGAGGGA+GGG - chr1_3:55974460-55974479 None:intergenic 55.0%
TAAAAATGGGGGGCAGAGGG+AGG - chr1_3:55974461-55974480 None:intergenic 55.0%
GTCGTAAAAATGGGGGGCAG+AGG - chr1_3:55974465-55974484 None:intergenic 55.0%
! GTGGAGGAACAGAGTTGGTC+AGG - chr1_3:55974557-55974576 None:intergenic 55.0%
TGGCAGTGGAGGAACAGAGT+TGG - chr1_3:55974562-55974581 None:intergenic 55.0%
! GGCCAATCCTTTTGTGGCAG+TGG - chr1_3:55974576-55974595 None:intergenic 55.0%
ACAAGCAAGGGGTTCAGGGT+AGG + chr1_3:55975903-55975922 Msa0126840:intron 55.0%
GGTTGGACCTTTGCCATCCT+TGG + chr1_3:55976230-55976249 Msa0126840:three_prime_UTR 55.0%
! GGATTCGTGGCTTGGCCCTT+TGG - chr1_3:55972662-55972681 None:intergenic 60.0%
AACGGCCAGGTAAAGGGGTG+CGG - chr1_3:55974319-55974338 None:intergenic 60.0%
CTCGCAACGGCCAGGTAAAG+GGG - chr1_3:55974324-55974343 None:intergenic 60.0%
GACTCGCAACGGCCAGGTAA+AGG - chr1_3:55974326-55974345 None:intergenic 60.0%
AAAATGGGGGGCAGAGGGAG+GGG - chr1_3:55974459-55974478 None:intergenic 60.0%
! ACGGCCAGGTAAAGGGGTGC+GGG - chr1_3:55974318-55974337 None:intergenic 65.0%
GAAGGAGACTCGCAACGGCC+AGG - chr1_3:55974332-55974351 None:intergenic 65.0%
GGTGGCTGGGTTCCAACGTC+TGG - chr1_3:55974383-55974402 None:intergenic 65.0%
AAATGGGGGGCAGAGGGAGG+GGG - chr1_3:55974458-55974477 None:intergenic 65.0%
GCTACGTCAGCAGTCGCTCC+TGG + chr1_3:55975214-55975233 Msa0126840:CDS 65.0%
GCGGGCGGAGGAAGGGAAGA+AGG - chr1_3:55974300-55974319 None:intergenic 70.0%
! AAGGGGTGCGGGCGGAGGAA+GGG - chr1_3:55974307-55974326 None:intergenic 70.0%
! AAAGGGGTGCGGGCGGAGGA+AGG - chr1_3:55974308-55974327 None:intergenic 70.0%
! AGGTAAAGGGGTGCGGGCGG+AGG - chr1_3:55974312-55974331 None:intergenic 70.0%
TCCGCCCGCACCCCTTTACC+TGG + chr1_3:55974311-55974330 Msa0126840:intron 70.0%
! GCCAGGTAAAGGGGTGCGGG+CGG - chr1_3:55974315-55974334 None:intergenic 70.0%
TGGGGAGGGCGAAGTGGTGC+AGG - chr1_3:55974433-55974452 None:intergenic 70.0%
AGAGGGAGGGGGGATGGGGA+GGG - chr1_3:55974447-55974466 None:intergenic 70.0%
AATGGGGGGCAGAGGGAGGG+GGG - chr1_3:55974457-55974476 None:intergenic 70.0%
GGGGGATGGGGAGGGCGAAG+TGG - chr1_3:55974439-55974458 None:intergenic 75.0%
CAGAGGGAGGGGGGATGGGG+AGG - chr1_3:55974448-55974467 None:intergenic 75.0%
GGGCAGAGGGAGGGGGGATG+GGG - chr1_3:55974451-55974470 None:intergenic 75.0%
GGGGCAGAGGGAGGGGGGAT+GGG - chr1_3:55974452-55974471 None:intergenic 75.0%
! GGGGGCAGAGGGAGGGGGGA+TGG - chr1_3:55974453-55974472 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 55971668 55976516 55971668 ID=Msa0126840;Name=Msa0126840
chr1_3 mRNA 55971668 55976516 55971668 ID=Msa0126840-mRNA-1;Parent=Msa0126840;Name=Msa0126840-mRNA-1;_AED=0.09;_eAED=0.09;_QI=239|1|1|1|0.87|0.77|9|355|247
chr1_3 exon 55971668 55971887 55971668 ID=Msa0126840-mRNA-1:exon:17502;Parent=Msa0126840-mRNA-1
chr1_3 exon 55972009 55972179 55972009 ID=Msa0126840-mRNA-1:exon:17503;Parent=Msa0126840-mRNA-1
chr1_3 exon 55972269 55972362 55972269 ID=Msa0126840-mRNA-1:exon:17504;Parent=Msa0126840-mRNA-1
chr1_3 exon 55972638 55972757 55972638 ID=Msa0126840-mRNA-1:exon:17505;Parent=Msa0126840-mRNA-1
chr1_3 exon 55972889 55972937 55972889 ID=Msa0126840-mRNA-1:exon:17506;Parent=Msa0126840-mRNA-1
chr1_3 exon 55975136 55975235 55975136 ID=Msa0126840-mRNA-1:exon:17507;Parent=Msa0126840-mRNA-1
chr1_3 exon 55975308 55975369 55975308 ID=Msa0126840-mRNA-1:exon:17508;Parent=Msa0126840-mRNA-1
chr1_3 exon 55975511 55975572 55975511 ID=Msa0126840-mRNA-1:exon:17509;Parent=Msa0126840-mRNA-1
chr1_3 exon 55976057 55976516 55976057 ID=Msa0126840-mRNA-1:exon:17510;Parent=Msa0126840-mRNA-1
chr1_3 five_prime_UTR 55971668 55971887 55971668 ID=Msa0126840-mRNA-1:five_prime_utr;Parent=Msa0126840-mRNA-1
chr1_3 five_prime_UTR 55972009 55972027 55972009 ID=Msa0126840-mRNA-1:five_prime_utr;Parent=Msa0126840-mRNA-1
chr1_3 CDS 55972028 55972179 55972028 ID=Msa0126840-mRNA-1:cds;Parent=Msa0126840-mRNA-1
chr1_3 CDS 55972269 55972362 55972269 ID=Msa0126840-mRNA-1:cds;Parent=Msa0126840-mRNA-1
chr1_3 CDS 55972638 55972757 55972638 ID=Msa0126840-mRNA-1:cds;Parent=Msa0126840-mRNA-1
chr1_3 CDS 55972889 55972937 55972889 ID=Msa0126840-mRNA-1:cds;Parent=Msa0126840-mRNA-1
chr1_3 CDS 55975136 55975235 55975136 ID=Msa0126840-mRNA-1:cds;Parent=Msa0126840-mRNA-1
chr1_3 CDS 55975308 55975369 55975308 ID=Msa0126840-mRNA-1:cds;Parent=Msa0126840-mRNA-1
chr1_3 CDS 55975511 55975572 55975511 ID=Msa0126840-mRNA-1:cds;Parent=Msa0126840-mRNA-1
chr1_3 CDS 55976057 55976161 55976057 ID=Msa0126840-mRNA-1:cds;Parent=Msa0126840-mRNA-1
chr1_3 three_prime_UTR 55976162 55976516 55976162 ID=Msa0126840-mRNA-1:three_prime_utr;Parent=Msa0126840-mRNA-1
Gene Sequence

>Msa0126840

ATGGCGGAAGATCTGGTTTTGGATACTGCAATCAGAGATTGGGTGTTAATCCCTTTATCTGTTGTTATGGTCCTTATTGGTGTGCTTCGTCATATTGTTTCCAAGCTTCTGCGTTCTTCTCAAACTCCTGATATCAAAATTGTCAGAGAAGGGCAAGTTATGCTTAGAGCTCGGAATTTACGTGCTGCGGCTAATTTTATCCCTTCTAAGGCTTTTCGTGCCCGCAAGCTTTATTATTGTAATGAGGAAAATGGTCTGTTATTCGTTCCAAAGGGCCAAGCCACGAATCCACAAGCACAAATGTTCTCTGATCCGAACATGGCCATGGATATGATGAAGAAAAATCTTTCAATGATTATACCTCAGACTCTTACTTTTGCTTGGGTGAACTTTTTCTTTTCTGGATTTGTAGCAGCCAAGATACCTTTTCCATTGACACAAAGGTTCAGGTCCATGTTACAAAATGGAATAGACCTCAGCACAGTTGATGTTAGCTACGTCAGCAGTCGCTCCTGGTACTTTCTCAATCTGTTTGGCTTAAGAGGATTGTTTAGTCTCATCTTGGGGGAAGAAAATGCTGTAGATGATACACAAAGAATGATGCAAATGGGTGGTGGATTCGGATTTGATCCTTCAAAGGGTCTGAGTGTTGAGAAAGACAATCTTGACATAACCCAACATGACTGGGCTTTGCCAAATTTCGAGCATCATGCTGAAGATGTTTTGAAGAAAGTTATTAGCTGA

Protein sequence

>Msa0126840

MAEDLVLDTAIRDWVLIPLSVVMVLIGVLRHIVSKLLRSSQTPDIKIVREGQVMLRARNLRAAANFIPSKAFRARKLYYCNEENGLLFVPKGQATNPQAQMFSDPNMAMDMMKKNLSMIIPQTLTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIDLSTVDVSYVSSRSWYFLNLFGLRGLFSLILGEENAVDDTQRMMQMGGGFGFDPSKGLSVEKDNLDITQHDWALPNFEHHAEDVLKKVIS*