AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0645030

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0645030 MtrunA17_Chr4g0032411 94.251 487 28 0 1 487 1 487 0.0 953
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0645030 AT1G51310.1 77.986 427 89 3 59 485 70 491 0.0 694

Find 148 sgRNAs with CRISPR-Local

Find 376 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTGGTTCTGGTGTAATTT+TGG 0.192938 4_3:+49404582 Msa0645030:CDS
CACACTTCTTGCAGGTTATC+TGG 0.237723 4_3:-49404709 None:intergenic
GGGGAGGCAAAACCTATTTA+TGG 0.240064 4_3:-49405194 None:intergenic
GAATCCTTTCTATCTTTATT+TGG 0.260617 4_3:-49403329 None:intergenic
TTTATCCGGCATCCGAAAAT+TGG 0.265934 4_3:+49404824 Msa0645030:three_prime_UTR
TTCATTTGACCGATGAATAT+TGG 0.267209 4_3:+49401976 Msa0645030:CDS
GTCAAAGGAAAAGTAATTTC+TGG 0.277431 4_3:-49404229 None:intergenic
ATAAATGTTCCCACGCCTTA+AGG 0.292057 4_3:-49404924 None:intergenic
GAATTTGTTGCAAGACATAT+TGG 0.295559 4_3:+49403659 Msa0645030:CDS
CTGCTTTCTACCTTAAGATA+TGG 0.295813 4_3:+49401216 Msa0645030:CDS
TTGGCAAACATCGGGGCTTC+TGG 0.299286 4_3:+49403726 Msa0645030:CDS
GGCATGGAACAGCGGAGATA+TGG 0.322908 4_3:-49401098 None:intergenic
GACCTGGCTGCAAACGTCTT+TGG 0.336923 4_3:-49401417 None:intergenic
TGCAATACAAGAATAAAGTT+TGG 0.340032 4_3:+49402521 Msa0645030:CDS
CGGAATCACACACTTCTTGC+AGG 0.341928 4_3:-49404717 None:intergenic
CGTTAATGTTCATCCGTTTA+CGG 0.350723 4_3:-49400892 None:intergenic
TCCAGTATGCGCAAAAGCTT+TGG 0.358828 4_3:+49404627 Msa0645030:CDS
AATTGCAATGCAAAGGTTGT+AGG 0.359547 4_3:+49404986 Msa0645030:three_prime_UTR
GAGGTGGTGAAGCGGAGATT+AGG 0.367994 4_3:-49401011 None:intergenic
AGATAGTGTAAAGAGATGTT+AGG 0.368840 4_3:+49405107 Msa0645030:three_prime_UTR
ATTGGCAAGTAAAGCATCAT+AGG 0.370643 4_3:+49404744 Msa0645030:CDS
AACGCGAAAGATGTTGAAAA+TGG 0.371028 4_3:+49400911 Msa0645030:exon
TAAATGTTCCCACGCCTTAA+GGG 0.375525 4_3:-49404923 None:intergenic
CTACGATTGTAGCTTAGAAA+TGG 0.381122 4_3:+49404453 Msa0645030:CDS
AGGTGGTGAAGCGGAGATTA+GGG 0.383910 4_3:-49401010 None:intergenic
GCTTGTGTTCCAACCGTAAA+CGG 0.386713 4_3:+49400879 Msa0645030:five_prime_UTR
TAAAGATAGAAAGGATTCTC+AGG 0.389915 4_3:+49403334 Msa0645030:CDS
AGATTTCCTTGGCAAACATC+GGG 0.393126 4_3:+49403718 Msa0645030:CDS
TTCTTCTCGTTGCGCGATGT+AGG 0.399396 4_3:-49399678 None:intergenic
GATAGTGTAAAGAGATGTTA+GGG 0.400397 4_3:+49405108 Msa0645030:three_prime_UTR
AATTTGTTGCAAGACATATT+GGG 0.401161 4_3:+49403660 Msa0645030:CDS
CCATCCATCTCATCTGCAAA+TGG 0.404286 4_3:-49402732 None:intergenic
TTTGGATGCAATTGGTGGTA+TGG 0.406131 4_3:+49402665 Msa0645030:CDS
ATAGAAGATAAATCAAAGAT+TGG 0.410116 4_3:+49404661 Msa0645030:CDS
AAATGGCAGCGCGGTTGAAC+TGG 0.412868 4_3:+49400928 Msa0645030:CDS
CGCCAGGGTCTACGGCTACC+TGG 0.419218 4_3:+49403767 Msa0645030:CDS
GCTTCAGCTGGGACTGAGAT+AGG 0.421345 4_3:-49403069 None:intergenic
TTGGATGCAATTGGTGGTAT+GGG 0.426807 4_3:+49402666 Msa0645030:CDS
CTCCGGCTTCTTCATGCCGC+TGG 0.429892 4_3:+49401182 Msa0645030:CDS
AGTGTGTGATTCCGCAGAAT+TGG 0.430127 4_3:+49404726 Msa0645030:CDS
GATGATCAAGGCCTAGCAGC+TGG 0.432897 4_3:+49404526 Msa0645030:CDS
CTTGTATTGCAAAGAACATC+CGG 0.435203 4_3:-49402509 None:intergenic
GCATGTTCTTCCCTCATAGA+AGG 0.435501 4_3:-49404560 None:intergenic
GTCAAATGAACAACTTCTAA+TGG 0.437140 4_3:-49401963 None:intergenic
TCCACTTGGTTCTATTCCCA+AGG 0.437553 4_3:+49403102 Msa0645030:CDS
CCTACATCATTGAAGAGTAT+AGG 0.445194 4_3:+49402468 Msa0645030:CDS
GTGTGGTCGAACTCCGAATC+CGG 0.446590 4_3:+49402490 Msa0645030:CDS
GGAAGAACATGCATTGGTTC+TGG 0.448272 4_3:+49404571 Msa0645030:CDS
TGCATCGAAGCTGACTTCTC+TGG 0.455195 4_3:-49404311 None:intergenic
AAATATAAAACGCTAGGTAC+TGG 0.460166 4_3:+49404897 Msa0645030:three_prime_UTR
TTGCAAAGAACATCCGGATT+CGG 0.462280 4_3:-49402503 None:intergenic
CTAGGTACTGGTCTCCCTTA+AGG 0.465826 4_3:+49404909 Msa0645030:three_prime_UTR
GAGATTTCCTTGGCAAACAT+CGG 0.466787 4_3:+49403717 Msa0645030:CDS
TAGAAGATAAATCAAAGATT+GGG 0.467917 4_3:+49404662 Msa0645030:CDS
GGGACTGAGATAGGTGTGAT+AGG 0.470335 4_3:-49403060 None:intergenic
TTGATGCTAAACATGGACTA+AGG 0.472597 4_3:+49400849 Msa0645030:five_prime_UTR
ATACTTGGAACCATATCTTA+AGG 0.474173 4_3:-49401226 None:intergenic
GGGAGGCAAAACCTATTTAT+GGG 0.478679 4_3:-49405193 None:intergenic
CTGTGAACTGCCCAGCTGCT+AGG 0.480633 4_3:-49404537 None:intergenic
AGGTGATGTTTGAAGAGAAT+CGG 0.484439 4_3:-49401048 None:intergenic
GGCATGTGCACACATGTGTT+AGG 0.485453 4_3:+49404849 Msa0645030:three_prime_UTR
TCGACAGCAGCGTTGCCCTC+CGG 0.492339 4_3:+49401165 Msa0645030:CDS
ATTGCAATGCAAAGGTTGTA+GGG 0.492870 4_3:+49404987 Msa0645030:three_prime_UTR
GTAAAATAATTTGAAGAGAG+AGG 0.493406 4_3:+49405070 Msa0645030:three_prime_UTR
GCATGGAACAGCGGAGATAT+GGG 0.493552 4_3:-49401097 None:intergenic
TACTTTAAATTGCAATGCAA+AGG 0.497796 4_3:+49404979 Msa0645030:three_prime_UTR
TGTAGCTTAGAAATGGAACT+TGG 0.500072 4_3:+49404460 Msa0645030:CDS
GATGTTAGGGGAAAGGATCA+AGG 0.500741 4_3:+49405121 Msa0645030:three_prime_UTR
TGCCAAAGACGTTTGCAGCC+AGG 0.501877 4_3:+49401415 Msa0645030:CDS
TCCGGCATCCGAAAATTGGC+AGG 0.503125 4_3:+49404828 Msa0645030:three_prime_UTR
TCTACCAAATAAAGATAGAA+AGG 0.504703 4_3:+49403325 Msa0645030:CDS
GCGGAGATATGGGTCGCGTT+CGG 0.506717 4_3:-49401087 None:intergenic
CATCCATCTCATCTGCAAAT+GGG 0.509454 4_3:-49402731 None:intergenic
CCACCCATTTGCAGATGAGA+TGG 0.509813 4_3:+49402728 Msa0645030:CDS
TTATACTATTGGTCAACGCC+AGG 0.512411 4_3:+49403751 Msa0645030:CDS
GAGTGGCTTCTGCTGCGGCA+TGG 0.512805 4_3:-49401114 None:intergenic
CCTATACTCTTCAATGATGT+AGG 0.515602 4_3:-49402468 None:intergenic
GGAGAAAGAAGGTATCATAC+TGG 0.516143 4_3:+49403682 Msa0645030:CDS
AGGACAAACCATGGACCTCC+AGG 0.518014 4_3:-49403785 None:intergenic
GCTGAGACGGGAGATTTCCT+TGG 0.524925 4_3:+49403707 Msa0645030:CDS
AATGTTCATCCGTTTACGGT+TGG 0.527451 4_3:-49400888 None:intergenic
TTGGTCAACGCCAGGGTCTA+CGG 0.528709 4_3:+49403759 Msa0645030:CDS
ATCATACTGGAAGCTGAGAC+GGG 0.529666 4_3:+49403695 Msa0645030:CDS
AAAGGCGCATATTCCGTGTC+GGG 0.531134 4_3:+49404256 Msa0645030:CDS
GTAAAGAGATGTTAGGGGAA+AGG 0.531444 4_3:+49405114 Msa0645030:three_prime_UTR
CATTCTCTGACTTGCTGTAG+AGG 0.537952 4_3:-49405045 None:intergenic
CTACAGCAAGTCAGAGAATG+AGG 0.538286 4_3:+49405048 Msa0645030:three_prime_UTR
GAGAAGTCAGCTTCGATGCA+AGG 0.540790 4_3:+49404314 Msa0645030:CDS
GACCAGCGGCATGAAGAAGC+CGG 0.541449 4_3:-49401184 None:intergenic
TATCATACTGGAAGCTGAGA+CGG 0.551422 4_3:+49403694 Msa0645030:CDS
TATGAGGGAAGAACATGCAT+TGG 0.551622 4_3:+49404565 Msa0645030:CDS
GCAGTTCACAGCCTTCTATG+AGG 0.552825 4_3:+49404549 Msa0645030:CDS
CGAAGCTGACTTCTCTGGCT+AGG 0.553259 4_3:-49404306 None:intergenic
TGATGCTAAACATGGACTAA+GGG 0.554568 4_3:+49400850 Msa0645030:five_prime_UTR
TACTGGTCTCCCTTAAGGCG+TGG 0.557287 4_3:+49404914 Msa0645030:three_prime_UTR
ATTTGTTGCAAGACATATTG+GGG 0.559794 4_3:+49403661 Msa0645030:CDS
ATCTGCAGGATGAAGTCCGC+AGG 0.561896 4_3:+49403285 Msa0645030:intron
AGACATATTGGGGAGAAAGA+AGG 0.564121 4_3:+49403671 Msa0645030:CDS
TACGGCTACCTGGAGGTCCA+TGG 0.565169 4_3:+49403777 Msa0645030:CDS
ATGCAGGTATGTTGTTGAGA+AGG 0.566844 4_3:+49404179 Msa0645030:intron
GAGGCAAAACCTATTTATGG+GGG 0.570173 4_3:-49405191 None:intergenic
GGAGGCAAAACCTATTTATG+GGG 0.571450 4_3:-49405192 None:intergenic
TGTGATAGTTCTAGAGCAGA+AGG 0.575470 4_3:-49402756 None:intergenic
CAGTTCACAGCCTTCTATGA+GGG 0.575987 4_3:+49404550 Msa0645030:CDS
CTCCAGGTAGCCGTAGACCC+TGG 0.576527 4_3:-49403769 None:intergenic
TCTGCTGCGGCATGGAACAG+CGG 0.576594 4_3:-49401106 None:intergenic
TGGAAAACTTTGATCATCCC+CGG 0.577452 4_3:-49404608 None:intergenic
CGCATATCTGAAGATGATCA+AGG 0.577500 4_3:+49404514 Msa0645030:CDS
TGCTTTACTTGCCAATTCTG+CGG 0.578853 4_3:-49404737 None:intergenic
TGCCTCTGGGCATTATGCAA+AGG 0.585153 4_3:+49402701 Msa0645030:CDS
TCGCGTTCGGCATTGAGAGA+AGG 0.585831 4_3:-49401074 None:intergenic
TATACTATTGGTCAACGCCA+GGG 0.586094 4_3:+49403752 Msa0645030:CDS
TTGGCAAGTAAAGCATCATA+GGG 0.588703 4_3:+49404745 Msa0645030:CDS
ATGATCAAGGCCTAGCAGCT+GGG 0.590945 4_3:+49404527 Msa0645030:CDS
AGCGGCATGAAGAAGCCGGA+GGG 0.596082 4_3:-49401180 None:intergenic
CCATTTGCAGATGAGATGGA+TGG 0.598580 4_3:+49402732 Msa0645030:CDS
AGGCAAAACCTATTTATGGG+GGG 0.599787 4_3:-49405190 None:intergenic
CACTGATAAGAACAGCGACT+CGG 0.605096 4_3:-49401136 None:intergenic
AGCTGACTTCTCTGGCTAGG+AGG 0.606523 4_3:-49404303 None:intergenic
GCCATTTAAAAGACCCGACA+CGG 0.606660 4_3:-49404269 None:intergenic
AAAAGGCGCATATTCCGTGT+CGG 0.607494 4_3:+49404255 Msa0645030:CDS
ACTGGTCTCCCTTAAGGCGT+GGG 0.609375 4_3:+49404915 Msa0645030:three_prime_UTR
GTCGCTGTTCTTATCAGTGG+CGG 0.611053 4_3:+49401140 Msa0645030:CDS
CGAGTCGCTGTTCTTATCAG+TGG 0.614436 4_3:+49401137 Msa0645030:CDS
AAAGATAGAAAGGATTCTCA+GGG 0.620229 4_3:+49403335 Msa0645030:CDS
ACTCGGAGTGGCTTCTGCTG+CGG 0.622172 4_3:-49401119 None:intergenic
CCATCTCATCTGCAAATGGG+TGG 0.623548 4_3:-49402728 None:intergenic
AGAAGCCCCGATGTTTGCCA+AGG 0.626987 4_3:-49403724 None:intergenic
TACTTCAAATCATCTTCCCA+AGG 0.627784 4_3:-49401392 None:intergenic
AGAAAGTTTGATGCTAAACA+TGG 0.629425 4_3:+49400842 Msa0645030:intron
GATGCTAAACATGGACTAAG+GGG 0.636801 4_3:+49400851 Msa0645030:five_prime_UTR
CAGCGGCATGAAGAAGCCGG+AGG 0.644996 4_3:-49401181 None:intergenic
ATCATTGAAGAGTATAGGTG+TGG 0.645225 4_3:+49402473 Msa0645030:CDS
ATAAGAACAGCGACTCGGAG+TGG 0.651106 4_3:-49401131 None:intergenic
GATTTCCTTGGCAAACATCG+GGG 0.658683 4_3:+49403719 Msa0645030:CDS
CTTGATCATCTTCAGATATG+CGG 0.670803 4_3:-49404513 None:intergenic
TAAGCTACAATCGTAGAACA+CGG 0.685925 4_3:-49404446 None:intergenic
AAGCTACAATCGTAGAACAC+GGG 0.687382 4_3:-49404445 None:intergenic
TCGGCATTGAGAGAAGGTGA+AGG 0.693086 4_3:-49401068 None:intergenic
ATGCTAAACATGGACTAAGG+GGG 0.695425 4_3:+49400852 Msa0645030:five_prime_UTR
TCTAGAACTATCACAAGACA+CGG 0.705464 4_3:+49402764 Msa0645030:CDS
GATAGAGAGAGAGAACAGAG+TGG 0.711778 4_3:-49400954 None:intergenic
CAGGGTCTACGGCTACCTGG+AGG 0.712205 4_3:+49403770 Msa0645030:CDS
AGCAGTGCAAGAATGACCAG+CGG 0.724329 4_3:-49401198 None:intergenic
AACCTTTGCATAATGCCCAG+AGG 0.738468 4_3:-49402703 None:intergenic
ACCTTGGGAATAGAACCAAG+TGG 0.740645 4_3:-49403103 None:intergenic
ATAGTGTAAAGAGATGTTAG+GGG 0.753903 4_3:+49405109 Msa0645030:three_prime_UTR
AGATGTTGAAAATGGCAGCG+CGG 0.795890 4_3:+49400919 Msa0645030:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTATTATTTGAAATTGT+CGG - chr4_3:49400400-49400419 None:intergenic 10.0%
!!! ATTCTTTTTAAGTTTTTTTT+TGG + chr4_3:49400760-49400779 Msa0645030:intron 10.0%
!!! TTCTTTTTAAGTTTTTTTTT+GGG + chr4_3:49400761-49400780 Msa0645030:intron 10.0%
!!! TATTTAGAATAAGTATTTTT+TGG + chr4_3:49404944-49404963 Msa0645030:three_prime_UTR 10.0%
!!! TTATTATTTTTTACAAGATA+GGG - chr4_3:49405217-49405236 None:intergenic 10.0%
!!! TTTATTATTTTTTACAAGAT+AGG - chr4_3:49405218-49405237 None:intergenic 10.0%
!!! TTTCTTTTGTAAAAAATTGT+AGG + chr4_3:49399943-49399962 Msa0645030:intron 15.0%
!! AGGTTGAATAATAAATATTT+AGG + chr4_3:49399963-49399982 Msa0645030:intron 15.0%
!! ATTGCACAATAAAAAAATTT+AGG - chr4_3:49400132-49400151 None:intergenic 15.0%
!! AATAAGTGTTTACATATAAT+TGG - chr4_3:49400194-49400213 None:intergenic 15.0%
!! TTAAAGGTTAATTAAGTAAA+TGG - chr4_3:49400719-49400738 None:intergenic 15.0%
!! TTTCTTAATTAAGATGAAAT+TGG + chr4_3:49401311-49401330 Msa0645030:intron 15.0%
!! TTCTTAATTAAGATGAAATT+GGG + chr4_3:49401312-49401331 Msa0645030:intron 15.0%
!! AACTTAAAATTCTAGTAAAA+TGG - chr4_3:49402053-49402072 None:intergenic 15.0%
!! TTATAGAAATAATCTGAAAA+CGG - chr4_3:49402208-49402227 None:intergenic 15.0%
!!! TTTGACTTTATTTTATGTTT+TGG + chr4_3:49402277-49402296 Msa0645030:intron 15.0%
!! TTAGTTTAAACAATTAACTT+AGG - chr4_3:49402900-49402919 None:intergenic 15.0%
!! TAAAAATAAAATGACACTTA+TGG + chr4_3:49403484-49403503 Msa0645030:intron 15.0%
!! TATAACTTTGAACAAAATAA+TGG - chr4_3:49403567-49403586 None:intergenic 15.0%
!! AAAAATAAATATAAAACGCT+AGG + chr4_3:49404891-49404910 Msa0645030:three_prime_UTR 15.0%
!!! TATTATTTTTTACAAGATAG+GGG - chr4_3:49405216-49405235 None:intergenic 15.0%
!!! ACTAAAAGTCATTTAAGTTA+GGG + chr4_3:49400432-49400451 Msa0645030:intron 20.0%
!! CAAAACTGTGAATATTTATA+GGG - chr4_3:49400475-49400494 None:intergenic 20.0%
!! ACAAAACTGTGAATATTTAT+AGG - chr4_3:49400476-49400495 None:intergenic 20.0%
!!! AAGTGTGATTTTATTTTGTA+GGG - chr4_3:49400661-49400680 None:intergenic 20.0%
!!! AAAGTGTGATTTTATTTTGT+AGG - chr4_3:49400660-49400679 None:intergenic 20.0%
!!! ACATTTTTCTTAAGCATTTA+AGG + chr4_3:49400539-49400558 Msa0645030:intron 20.0%
!!! CATTTTTCTTAAGCATTTAA+GGG + chr4_3:49400540-49400559 Msa0645030:intron 20.0%
!!! AAAGTGTGATTTTATTTTGT+AGG + chr4_3:49400660-49400679 Msa0645030:intron 20.0%
!!! AAGTGTGATTTTATTTTGTA+GGG + chr4_3:49400661-49400680 Msa0645030:intron 20.0%
!!! ATTTTTACACTCAAAATTTC+CGG - chr4_3:49401526-49401545 None:intergenic 20.0%
!!! TGATTTTGTAAGATTGATTA+TGG - chr4_3:49401836-49401855 None:intergenic 20.0%
!!! ACAAAATCAATTTTTGTCAT+TGG + chr4_3:49401847-49401866 Msa0645030:intron 20.0%
!!! GTATTTATTTCATTGTTTTC+AGG + chr4_3:49401932-49401951 Msa0645030:intron 20.0%
!! TTAAACTATTTATCCAAACA+TGG + chr4_3:49402346-49402365 Msa0645030:intron 20.0%
!!! AATAAAATGTTTTTCCTGTT+AGG + chr4_3:49402636-49402655 Msa0645030:intron 20.0%
!!! TATAAATATGTTTTCTTTGG+AGG - chr4_3:49402941-49402960 None:intergenic 20.0%
!!! GCATATAAATATGTTTTCTT+TGG - chr4_3:49402944-49402963 None:intergenic 20.0%
!! ATTAGTAGAAAATCATTGTT+AGG + chr4_3:49402974-49402993 Msa0645030:intron 20.0%
!! ATCAAACATTGAAATAGATA+TGG - chr4_3:49403406-49403425 None:intergenic 20.0%
!! ATGCTTATCATCTATAAATA+AGG + chr4_3:49403974-49403993 Msa0645030:intron 20.0%
!! ATAGAAGATAAATCAAAGAT+TGG + chr4_3:49404661-49404680 Msa0645030:CDS 20.0%
!! TAGAAGATAAATCAAAGATT+GGG + chr4_3:49404662-49404681 Msa0645030:CDS 20.0%
!!! TTTAAATTTTCCCTTTTATC+CGG + chr4_3:49404810-49404829 Msa0645030:three_prime_UTR 20.0%
!!! TTAGAATAAGTATTTTTTGG+AGG + chr4_3:49404947-49404966 Msa0645030:three_prime_UTR 20.0%
!!! TAGAATAAGTATTTTTTGGA+GGG + chr4_3:49404948-49404967 Msa0645030:three_prime_UTR 20.0%
! TATAATTGGTCAAGACTAAT+CGG - chr4_3:49400180-49400199 None:intergenic 25.0%
! AATAATTGGTCAAGACTAAT+CGG - chr4_3:49400221-49400240 None:intergenic 25.0%
!! CACTAAAAGTCATTTAAGTT+AGG + chr4_3:49400431-49400450 Msa0645030:intron 25.0%
!! TGCTGATGGAAAATTTTTAT+AGG + chr4_3:49400571-49400590 Msa0645030:intron 25.0%
!! GCTGATGGAAAATTTTTATA+GGG + chr4_3:49400572-49400591 Msa0645030:intron 25.0%
! GCAACAACTAAATAACTTAA+AGG - chr4_3:49400735-49400754 None:intergenic 25.0%
!! TTTTTACACTCAAAATTTCC+GGG - chr4_3:49401525-49401544 None:intergenic 25.0%
!!! ATTGATTTTAACTAGAAGGT+AGG - chr4_3:49401567-49401586 None:intergenic 25.0%
!!! GAGAATTGATTTTAACTAGA+AGG - chr4_3:49401571-49401590 None:intergenic 25.0%
! TAGCTTCAATAAATAAGTTC+TGG - chr4_3:49401697-49401716 None:intergenic 25.0%
! TTGACAGAACTAAACTTTAT+AGG + chr4_3:49402074-49402093 Msa0645030:intron 25.0%
! GTTAATTCGAAATTCCAAAT+AGG - chr4_3:49402100-49402119 None:intergenic 25.0%
! AGAATGTTTGAGAGAATTTA+TGG + chr4_3:49402155-49402174 Msa0645030:intron 25.0%
! TAGAACATGTTCATTAACTT+AGG - chr4_3:49402372-49402391 None:intergenic 25.0%
! TGCAATACAAGAATAAAGTT+TGG + chr4_3:49402521-49402540 Msa0645030:CDS 25.0%
! AAACACAACAAACAACAATT+TGG - chr4_3:49402572-49402591 None:intergenic 25.0%
!! CACAAAAGTATATCTCATAT+TGG - chr4_3:49402792-49402811 None:intergenic 25.0%
!! CAATATGAGATATACTTTTG+TGG + chr4_3:49402790-49402809 Msa0645030:intron 25.0%
!! ATGATTTTCTACTAATGTAC+AGG - chr4_3:49402970-49402989 None:intergenic 25.0%
!!! ATTTCGTTTAACTTTTTCAG+AGG + chr4_3:49403159-49403178 Msa0645030:intron 25.0%
! TATATCACTACATGATGTTA+TGG + chr4_3:49403226-49403245 Msa0645030:intron 25.0%
! TCTACCAAATAAAGATAGAA+AGG + chr4_3:49403325-49403344 Msa0645030:CDS 25.0%
! GAATCCTTTCTATCTTTATT+TGG - chr4_3:49403332-49403351 None:intergenic 25.0%
!!! AATTTGTTGCAAGACATATT+GGG + chr4_3:49403660-49403679 Msa0645030:CDS 25.0%
!!! TACTTTTTGTCATTTTATGC+AGG + chr4_3:49404163-49404182 Msa0645030:intron 25.0%
!! ACTTTTCCTTTGACAAAAAA+AGG + chr4_3:49404238-49404257 Msa0645030:CDS 25.0%
!!! GGTTTAACTTTTATCTTAAC+TGG - chr4_3:49404691-49404710 None:intergenic 25.0%
! TACTTTAAATTGCAATGCAA+AGG + chr4_3:49404979-49404998 Msa0645030:three_prime_UTR 25.0%
! GTAAAATAATTTGAAGAGAG+AGG + chr4_3:49405070-49405089 Msa0645030:three_prime_UTR 25.0%
CCTTGTAAAAATTGCAATTG+CGG + chr4_3:49399863-49399882 Msa0645030:intron 30.0%
CTTGTAAAAATTGCAATTGC+GGG + chr4_3:49399864-49399883 Msa0645030:intron 30.0%
TCTAGAAAAACTTTACGAGA+GGG + chr4_3:49399912-49399931 Msa0645030:intron 30.0%
GAAGTAAAAATGAACCCTTA+CGG + chr4_3:49400031-49400050 Msa0645030:intron 30.0%
AAAACTGCAAGTTAAATGTG+GGG - chr4_3:49400290-49400309 None:intergenic 30.0%
GAAAACTGCAAGTTAAATGT+GGG - chr4_3:49400291-49400310 None:intergenic 30.0%
TGAAAACTGCAAGTTAAATG+TGG - chr4_3:49400292-49400311 None:intergenic 30.0%
AATTGTCGGATAAACGATTT+GGG - chr4_3:49400386-49400405 None:intergenic 30.0%
AAATTGTCGGATAAACGATT+TGG - chr4_3:49400387-49400406 None:intergenic 30.0%
AGCATCAAACTTTCTGATAA+AGG - chr4_3:49400837-49400856 None:intergenic 30.0%
AGAAAGTTTGATGCTAAACA+TGG + chr4_3:49400842-49400861 Msa0645030:intron 30.0%
ATACTTGGAACCATATCTTA+AGG - chr4_3:49401229-49401248 None:intergenic 30.0%
AAAAAGGAAGAAGACATACT+TGG - chr4_3:49401244-49401263 None:intergenic 30.0%
CATTGAACGAATGCAAAAAA+AGG - chr4_3:49401260-49401279 None:intergenic 30.0%
!! TTGCTTTTGTGATTTTGTGT+AGG + chr4_3:49401340-49401359 Msa0645030:intron 30.0%
!! AGGAAGATTTTGACAACTTT+TGG + chr4_3:49401360-49401379 Msa0645030:intron 30.0%
!! AGATTTTGACAACTTTTGGA+CGG + chr4_3:49401364-49401383 Msa0645030:CDS 30.0%
ATAAGGATATGAAAAAGACC+TGG - chr4_3:49401436-49401455 None:intergenic 30.0%
AACGAAACACACACTAAATA+AGG - chr4_3:49401453-49401472 None:intergenic 30.0%
CTAGTTAAAATCAATTCTCG+AGG + chr4_3:49401572-49401591 Msa0645030:intron 30.0%
! CTTCAATAAATAAGTTCTGG+AGG - chr4_3:49401694-49401713 None:intergenic 30.0%
!!! TGCCTCTAGAATTGATTTTT+AGG + chr4_3:49401731-49401750 Msa0645030:intron 30.0%
GACCTAAAAATCAATTCTAG+AGG - chr4_3:49401736-49401755 None:intergenic 30.0%
GATACAGTTTGTGTTTACAT+TGG - chr4_3:49401911-49401930 None:intergenic 30.0%
GTCAAATGAACAACTTCTAA+TGG - chr4_3:49401966-49401985 None:intergenic 30.0%
TTCATTTGACCGATGAATAT+TGG + chr4_3:49401976-49401995 Msa0645030:CDS 30.0%
! CACGTTTTTCCAATATTCAT+CGG - chr4_3:49401988-49402007 None:intergenic 30.0%
CTAAACTTTATAGGCCTATT+TGG + chr4_3:49402083-49402102 Msa0645030:intron 30.0%
! GTTTTCACAAAAGCTATAAG+TGG - chr4_3:49402255-49402274 None:intergenic 30.0%
GACTTATTGAACTGTTTATC+AGG + chr4_3:49402442-49402461 Msa0645030:intron 30.0%
!!! CAAGATCTTGTTTTCATTTG+CGG + chr4_3:49402816-49402835 Msa0645030:intron 30.0%
GTGAAAACTCTTCAAAGATA+TGG - chr4_3:49402866-49402885 None:intergenic 30.0%
ACATGCTATAGTTTCTAATG+TGG + chr4_3:49403004-49403023 Msa0645030:intron 30.0%
! CTAATGTGGTTTGAAATTTC+AGG + chr4_3:49403018-49403037 Msa0645030:intron 30.0%
! TGGTTTGAAATTTCAGGTAA+AGG + chr4_3:49403024-49403043 Msa0645030:intron 30.0%
! ATTTGGTAGATCGAATTTTG+CGG - chr4_3:49403315-49403334 None:intergenic 30.0%
TAAAGATAGAAAGGATTCTC+AGG + chr4_3:49403334-49403353 Msa0645030:CDS 30.0%
AAAGATAGAAAGGATTCTCA+GGG + chr4_3:49403335-49403354 Msa0645030:CDS 30.0%
!!! TGATTAGTTTTGAAAGAGAC+TGG + chr4_3:49403461-49403480 Msa0645030:intron 30.0%
!! GAATTTGTTGCAAGACATAT+TGG + chr4_3:49403659-49403678 Msa0645030:CDS 30.0%
! ATTTGTTGCAAGACATATTG+GGG + chr4_3:49403661-49403680 Msa0645030:CDS 30.0%
CAATTAATGCAGGAAAGAAA+AGG - chr4_3:49403815-49403834 None:intergenic 30.0%
AAATGTGACAGGAAATTCAT+CGG - chr4_3:49403845-49403864 None:intergenic 30.0%
TGGAATGTATAAAATGTGAC+AGG - chr4_3:49403856-49403875 None:intergenic 30.0%
GATCTGTCTTCAACATAAAA+TGG - chr4_3:49403876-49403895 None:intergenic 30.0%
!! ATCTGTTACTGTTACTTTAG+AGG + chr4_3:49403912-49403931 Msa0645030:intron 30.0%
! ACTTTAGAGGTTAGTTAGTT+AGG + chr4_3:49403925-49403944 Msa0645030:intron 30.0%
AATAAGGATAGTTTAGAGAG+TGG + chr4_3:49403990-49404009 Msa0645030:intron 30.0%
TGCCATTATTCTGTAATCAA+GGG + chr4_3:49404045-49404064 Msa0645030:intron 30.0%
TTCCCTTGATTACAGAATAA+TGG - chr4_3:49404050-49404069 None:intergenic 30.0%
TTGTCTTGAATAATACCTGT+TGG + chr4_3:49404081-49404100 Msa0645030:intron 30.0%
GTCAAAGGAAAAGTAATTTC+TGG - chr4_3:49404232-49404251 None:intergenic 30.0%
GAAAAACATTTGTGATAGCA+GGG - chr4_3:49404371-49404390 None:intergenic 30.0%
TGAAAAACATTTGTGATAGC+AGG - chr4_3:49404372-49404391 None:intergenic 30.0%
AAATATAAAACGCTAGGTAC+TGG + chr4_3:49404897-49404916 Msa0645030:three_prime_UTR 30.0%
!!! AATAAGTATTTTTTGGAGGG+AGG + chr4_3:49404951-49404970 Msa0645030:three_prime_UTR 30.0%
!!! ATAAGTATTTTTTGGAGGGA+GGG + chr4_3:49404952-49404971 Msa0645030:three_prime_UTR 30.0%
AGATAGTGTAAAGAGATGTT+AGG + chr4_3:49405107-49405126 Msa0645030:three_prime_UTR 30.0%
GATAGTGTAAAGAGATGTTA+GGG + chr4_3:49405108-49405127 Msa0645030:three_prime_UTR 30.0%
ATAGTGTAAAGAGATGTTAG+GGG + chr4_3:49405109-49405128 Msa0645030:three_prime_UTR 30.0%
!!! TATTTTTTACAAGATAGGGG+AGG - chr4_3:49405213-49405232 None:intergenic 30.0%
! CCGCAATTGCAATTTTTACA+AGG - chr4_3:49399866-49399885 None:intergenic 35.0%
GTCTAGAAAAACTTTACGAG+AGG + chr4_3:49399911-49399930 Msa0645030:intron 35.0%
TTTAAGCCACAAAACCGTAA+GGG - chr4_3:49400048-49400067 None:intergenic 35.0%
! TTTTAAGCCACAAAACCGTA+AGG - chr4_3:49400049-49400068 None:intergenic 35.0%
TCTTGACCAATTATTTACGC+CGG + chr4_3:49400226-49400245 Msa0645030:intron 35.0%
ACATTACCGGCGTAAATAAT+TGG - chr4_3:49400235-49400254 None:intergenic 35.0%
AACGTTAACACATCCAAGTA+GGG - chr4_3:49400325-49400344 None:intergenic 35.0%
ATTGTCGGATAAACGATTTG+GGG - chr4_3:49400385-49400404 None:intergenic 35.0%
TAAGGGACTAAAAATGCTGA+TGG + chr4_3:49400557-49400576 Msa0645030:intron 35.0%
! TTGATGCTAAACATGGACTA+AGG + chr4_3:49400849-49400868 Msa0645030:five_prime_UTR 35.0%
! TGATGCTAAACATGGACTAA+GGG + chr4_3:49400850-49400869 Msa0645030:five_prime_UTR 35.0%
CGTTAATGTTCATCCGTTTA+CGG - chr4_3:49400895-49400914 None:intergenic 35.0%
AACGCGAAAGATGTTGAAAA+TGG + chr4_3:49400911-49400930 Msa0645030:exon 35.0%
!!! GGAGATTAGGGTTTATTTTG+CGG - chr4_3:49401001-49401020 None:intergenic 35.0%
!! ATCGGAACAGAATAGTTTTG+AGG - chr4_3:49401033-49401052 None:intergenic 35.0%
AGGTGATGTTTGAAGAGAAT+CGG - chr4_3:49401051-49401070 None:intergenic 35.0%
CTGCTTTCTACCTTAAGATA+TGG + chr4_3:49401216-49401235 Msa0645030:CDS 35.0%
TACTTCAAATCATCTTCCCA+AGG - chr4_3:49401395-49401414 None:intergenic 35.0%
! ATGAGTTGAATGTGAAATCC+CGG + chr4_3:49401504-49401523 Msa0645030:intron 35.0%
! TAGAATCAATTTTGCCTCCA+CGG - chr4_3:49401661-49401680 None:intergenic 35.0%
CGATGAATATTGGAAAAACG+TGG + chr4_3:49401986-49402005 Msa0645030:CDS 35.0%
TGAGTTTAGAAGGACATGAA+GGG - chr4_3:49402023-49402042 None:intergenic 35.0%
ATTCTCTCAAACATTCTCAC+AGG - chr4_3:49402152-49402171 None:intergenic 35.0%
TCATTAACTTAGGCCATGTT+TGG - chr4_3:49402362-49402381 None:intergenic 35.0%
GCAATTTCACTGTTGAGTAT+TGG + chr4_3:49402395-49402414 Msa0645030:intron 35.0%
CCTATACTCTTCAATGATGT+AGG - chr4_3:49402471-49402490 None:intergenic 35.0%
! CCTACATCATTGAAGAGTAT+AGG + chr4_3:49402468-49402487 Msa0645030:CDS 35.0%
! ATCATTGAAGAGTATAGGTG+TGG + chr4_3:49402473-49402492 Msa0645030:CDS 35.0%
CTTGTATTGCAAAGAACATC+CGG - chr4_3:49402512-49402531 None:intergenic 35.0%
! TTTCCTGTTAGGTGCATTTT+TGG + chr4_3:49402647-49402666 Msa0645030:intron 35.0%
! TCTAGAACTATCACAAGACA+CGG + chr4_3:49402764-49402783 Msa0645030:CDS 35.0%
! TGTTTTCATTTGCGGTTTGT+AGG + chr4_3:49402824-49402843 Msa0645030:intron 35.0%
AACTTGTCACAACAAACCTT+GGG - chr4_3:49403121-49403140 None:intergenic 35.0%
AAACTTGTCACAACAAACCT+TGG - chr4_3:49403122-49403141 None:intergenic 35.0%
TTATGTCAGAGTGAGAATTC+TGG + chr4_3:49403194-49403213 Msa0645030:intron 35.0%
! TTCTCAGGGAATATGCTTTT+TGG + chr4_3:49403349-49403368 Msa0645030:CDS 35.0%
!! TCTCAGGGAATATGCTTTTT+GGG + chr4_3:49403350-49403369 Msa0645030:CDS 35.0%
!!! GGCTTCTGGTTTTATACTAT+TGG + chr4_3:49403740-49403759 Msa0645030:CDS 35.0%
CGGATCAATACAATTAATGC+AGG - chr4_3:49403825-49403844 None:intergenic 35.0%
ACAGATCTATCACTACAATG+TGG - chr4_3:49403898-49403917 None:intergenic 35.0%
GAATAATGGCAGATCATTGA+GGG - chr4_3:49404036-49404055 None:intergenic 35.0%
AGAATAATGGCAGATCATTG+AGG - chr4_3:49404037-49404056 None:intergenic 35.0%
CTGCCATTATTCTGTAATCA+AGG + chr4_3:49404044-49404063 Msa0645030:intron 35.0%
AGGTATTATTCAAGACAACG+AGG - chr4_3:49404079-49404098 None:intergenic 35.0%
! TGTTTCTACACGTACATGAT+AGG - chr4_3:49404109-49404128 None:intergenic 35.0%
ATCATGTACGTGTAGAAACA+TGG + chr4_3:49404109-49404128 Msa0645030:intron 35.0%
!!! TATGCGCCTTTTTTTGTCAA+AGG - chr4_3:49404247-49404266 None:intergenic 35.0%
! GGTCTTTTAAATGGCTTAGT+GGG + chr4_3:49404277-49404296 Msa0645030:CDS 35.0%
! TCCAGTATCTTAACCTTTTC+AGG + chr4_3:49404411-49404430 Msa0645030:intron 35.0%
ACCTGAAAAGGTTAAGATAC+TGG - chr4_3:49404415-49404434 None:intergenic 35.0%
TAAGCTACAATCGTAGAACA+CGG - chr4_3:49404449-49404468 None:intergenic 35.0%
CTACGATTGTAGCTTAGAAA+TGG + chr4_3:49404453-49404472 Msa0645030:CDS 35.0%
TGTAGCTTAGAAATGGAACT+TGG + chr4_3:49404460-49404479 Msa0645030:CDS 35.0%
CTTGATCATCTTCAGATATG+CGG - chr4_3:49404516-49404535 None:intergenic 35.0%
!!! CATTGGTTCTGGTGTAATTT+TGG + chr4_3:49404582-49404601 Msa0645030:CDS 35.0%
! ATTGGCAAGTAAAGCATCAT+AGG + chr4_3:49404744-49404763 Msa0645030:CDS 35.0%
! TTGGCAAGTAAAGCATCATA+GGG + chr4_3:49404745-49404764 Msa0645030:CDS 35.0%
AATTGCAATGCAAAGGTTGT+AGG + chr4_3:49404986-49405005 Msa0645030:three_prime_UTR 35.0%
ATTGCAATGCAAAGGTTGTA+GGG + chr4_3:49404987-49405006 Msa0645030:three_prime_UTR 35.0%
!!! CTCTGCACATGTTTTTAGAA+GGG + chr4_3:49405013-49405032 Msa0645030:three_prime_UTR 35.0%
!!! TCTGCACATGTTTTTAGAAG+GGG + chr4_3:49405014-49405033 Msa0645030:three_prime_UTR 35.0%
!!! CATGTTTTTAGAAGGGGAAA+TGG + chr4_3:49405020-49405039 Msa0645030:three_prime_UTR 35.0%
!! GTTATTTTCCCCCCATAAAT+AGG + chr4_3:49405182-49405201 Msa0645030:three_prime_UTR 35.0%
AGCAATACCTCTAATCTCGT+GGG + chr4_3:49399753-49399772 Msa0645030:intron 40.0%
TCCACTTAAGACCAATGTAG+TGG + chr4_3:49399776-49399795 Msa0645030:intron 40.0%
!! ACCACTACATTGGTCTTAAG+TGG - chr4_3:49399780-49399799 None:intergenic 40.0%
CTTATGACACACCACTACAT+TGG - chr4_3:49399790-49399809 None:intergenic 40.0%
ATGTAGTGGTGTGTCATAAG+AGG + chr4_3:49399790-49399809 Msa0645030:intron 40.0%
! AATGAACCCTTACGGTTTTG+TGG + chr4_3:49400039-49400058 Msa0645030:intron 40.0%
CGAAAAGACTTGCACATTAC+CGG - chr4_3:49400248-49400267 None:intergenic 40.0%
! CGGTAATGTGCAAGTCTTTT+CGG + chr4_3:49400246-49400265 Msa0645030:intron 40.0%
! AAGTTAAATGTGGGGTGTCA+TGG - chr4_3:49400282-49400301 None:intergenic 40.0%
ACGTTAACACATCCAAGTAG+GGG - chr4_3:49400324-49400343 None:intergenic 40.0%
GAACGTTAACACATCCAAGT+AGG - chr4_3:49400326-49400345 None:intergenic 40.0%
!! AATTTCCCTCGGTTGATAGT+AGG - chr4_3:49400355-49400374 None:intergenic 40.0%
! GATGCTAAACATGGACTAAG+GGG + chr4_3:49400851-49400870 Msa0645030:five_prime_UTR 40.0%
! ATGCTAAACATGGACTAAGG+GGG + chr4_3:49400852-49400871 Msa0645030:five_prime_UTR 40.0%
AATGTTCATCCGTTTACGGT+TGG - chr4_3:49400891-49400910 None:intergenic 40.0%
!!! GGTTTATTTTGCGGAGGTTT+TGG - chr4_3:49400992-49401011 None:intergenic 40.0%
!!! GATTAGGGTTTATTTTGCGG+AGG - chr4_3:49400998-49401017 None:intergenic 40.0%
!!! ATAGTTTTGAGGTGGTGAAG+CGG - chr4_3:49401022-49401041 None:intergenic 40.0%
!!! GGAACAGAATAGTTTTGAGG+TGG - chr4_3:49401030-49401049 None:intergenic 40.0%
CTGAGTTTAGAAGGACATGA+AGG - chr4_3:49402024-49402043 None:intergenic 40.0%
TGGTACTAGCTGAGTTTAGA+AGG - chr4_3:49402033-49402052 None:intergenic 40.0%
AATATGAGACAGAGCTGCAA+TGG - chr4_3:49402421-49402440 None:intergenic 40.0%
TTGCAAAGAACATCCGGATT+CGG - chr4_3:49402506-49402525 None:intergenic 40.0%
CATCCAAAAATGCACCTAAC+AGG - chr4_3:49402653-49402672 None:intergenic 40.0%
!! GGTGCATTTTTGGATGCAAT+TGG + chr4_3:49402657-49402676 Msa0645030:intron 40.0%
!! GCATTTTTGGATGCAATTGG+TGG + chr4_3:49402660-49402679 Msa0645030:CDS 40.0%
! TTTGGATGCAATTGGTGGTA+TGG + chr4_3:49402665-49402684 Msa0645030:CDS 40.0%
! TTGGATGCAATTGGTGGTAT+GGG + chr4_3:49402666-49402685 Msa0645030:CDS 40.0%
!!! GTTTTGACTATGTTGCCTCT+GGG + chr4_3:49402688-49402707 Msa0645030:CDS 40.0%
CATCCATCTCATCTGCAAAT+GGG - chr4_3:49402734-49402753 None:intergenic 40.0%
!! TGTGATAGTTCTAGAGCAGA+AGG - chr4_3:49402759-49402778 None:intergenic 40.0%
AAAAAGAAGTCGCTTCAGCT+GGG - chr4_3:49403083-49403102 None:intergenic 40.0%
! AAGCGACTTCTTTTTCCACT+TGG + chr4_3:49403088-49403107 Msa0645030:CDS 40.0%
!!! CAAGTTTTGTTGAGTGTTGC+TGG + chr4_3:49403135-49403154 Msa0645030:intron 40.0%
AGACATATTGGGGAGAAAGA+AGG + chr4_3:49403671-49403690 Msa0645030:CDS 40.0%
!! GGAGAAAGAAGGTATCATAC+TGG + chr4_3:49403682-49403701 Msa0645030:CDS 40.0%
TATCATACTGGAAGCTGAGA+CGG + chr4_3:49403694-49403713 Msa0645030:CDS 40.0%
GAGATTTCCTTGGCAAACAT+CGG + chr4_3:49403717-49403736 Msa0645030:CDS 40.0%
AGATTTCCTTGGCAAACATC+GGG + chr4_3:49403718-49403737 Msa0645030:CDS 40.0%
TTATACTATTGGTCAACGCC+AGG + chr4_3:49403751-49403770 Msa0645030:CDS 40.0%
TATACTATTGGTCAACGCCA+GGG + chr4_3:49403752-49403771 Msa0645030:CDS 40.0%
AAAGGAGATAGGACAAACCA+TGG - chr4_3:49403797-49403816 None:intergenic 40.0%
TGCAGGAAAGAAAAGGAGAT+AGG - chr4_3:49403808-49403827 None:intergenic 40.0%
ATGCAGGTATGTTGTTGAGA+AGG + chr4_3:49404179-49404198 Msa0645030:intron 40.0%
! GGGTCTTTTAAATGGCTTAG+TGG + chr4_3:49404276-49404295 Msa0645030:CDS 40.0%
!!! TAACCTTTTCAGGTGAGACA+TGG + chr4_3:49404421-49404440 Msa0645030:intron 40.0%
AAGCTACAATCGTAGAACAC+GGG - chr4_3:49404448-49404467 None:intergenic 40.0%
CGCATATCTGAAGATGATCA+AGG + chr4_3:49404514-49404533 Msa0645030:CDS 40.0%
TATGAGGGAAGAACATGCAT+TGG + chr4_3:49404565-49404584 Msa0645030:CDS 40.0%
!!! TCTGGTGTAATTTTGGAGTC+CGG + chr4_3:49404589-49404608 Msa0645030:CDS 40.0%
TGGAAAACTTTGATCATCCC+CGG - chr4_3:49404611-49404630 None:intergenic 40.0%
TGCTTTACTTGCCAATTCTG+CGG - chr4_3:49404740-49404759 None:intergenic 40.0%
! TTTTCGGATGCCGGATAAAA+GGG - chr4_3:49404823-49404842 None:intergenic 40.0%
! ATTTTCGGATGCCGGATAAA+AGG - chr4_3:49404824-49404843 None:intergenic 40.0%
TTTATCCGGCATCCGAAAAT+TGG + chr4_3:49404824-49404843 Msa0645030:three_prime_UTR 40.0%
TAAATGTTCCCACGCCTTAA+GGG - chr4_3:49404926-49404945 None:intergenic 40.0%
ATAAATGTTCCCACGCCTTA+AGG - chr4_3:49404927-49404946 None:intergenic 40.0%
! CCTTCTAAAAACATGTGCAG+AGG - chr4_3:49405015-49405034 None:intergenic 40.0%
!!! CCTCTGCACATGTTTTTAGA+AGG + chr4_3:49405012-49405031 Msa0645030:three_prime_UTR 40.0%
GTAAAGAGATGTTAGGGGAA+AGG + chr4_3:49405114-49405133 Msa0645030:three_prime_UTR 40.0%
AGGCAAAACCTATTTATGGG+GGG - chr4_3:49405193-49405212 None:intergenic 40.0%
GAGGCAAAACCTATTTATGG+GGG - chr4_3:49405194-49405213 None:intergenic 40.0%
GGAGGCAAAACCTATTTATG+GGG - chr4_3:49405195-49405214 None:intergenic 40.0%
GGGAGGCAAAACCTATTTAT+GGG - chr4_3:49405196-49405215 None:intergenic 40.0%
GCGCAACGAGAAGAAAAAAG+AGG + chr4_3:49399686-49399705 Msa0645030:five_prime_UTR 45.0%
CAGCAATACCTCTAATCTCG+TGG + chr4_3:49399752-49399771 Msa0645030:intron 45.0%
!! TGCAAGTCTTTTCGGTGTGA+GGG + chr4_3:49400254-49400273 Msa0645030:intron 45.0%
TCACTTAGCTAACCCCTACT+TGG + chr4_3:49400309-49400328 Msa0645030:intron 45.0%
ACCTAACCTACTATCAACCG+AGG + chr4_3:49400346-49400365 Msa0645030:intron 45.0%
CCTAACCTACTATCAACCGA+GGG + chr4_3:49400347-49400366 Msa0645030:intron 45.0%
GGGGATAGATGAATTTCCCT+CGG - chr4_3:49400366-49400385 None:intergenic 45.0%
GCTTGTGTTCCAACCGTAAA+CGG + chr4_3:49400879-49400898 Msa0645030:five_prime_UTR 45.0%
AGATGTTGAAAATGGCAGCG+CGG + chr4_3:49400919-49400938 Msa0645030:exon 45.0%
GATAGAGAGAGAGAACAGAG+TGG - chr4_3:49400957-49400976 None:intergenic 45.0%
CACTGATAAGAACAGCGACT+CGG - chr4_3:49401139-49401158 None:intergenic 45.0%
! ACTTTTGGACGGAATGTCCT+TGG + chr4_3:49401375-49401394 Msa0645030:CDS 45.0%
! CTTTTGGACGGAATGTCCTT+GGG + chr4_3:49401376-49401395 Msa0645030:CDS 45.0%
GGTGTTTCGCTCTGTAGAAT+TGG - chr4_3:49401640-49401659 None:intergenic 45.0%
!!! GGTTTTGACTATGTTGCCTC+TGG + chr4_3:49402687-49402706 Msa0645030:CDS 45.0%
AACCTTTGCATAATGCCCAG+AGG - chr4_3:49402706-49402725 None:intergenic 45.0%
CCATCCATCTCATCTGCAAA+TGG - chr4_3:49402735-49402754 None:intergenic 45.0%
CCATTTGCAGATGAGATGGA+TGG + chr4_3:49402732-49402751 Msa0645030:CDS 45.0%
GAAAAAGAAGTCGCTTCAGC+TGG - chr4_3:49403084-49403103 None:intergenic 45.0%
!! TCCACTTGGTTCTATTCCCA+AGG + chr4_3:49403102-49403121 Msa0645030:CDS 45.0%
ACCTTGGGAATAGAACCAAG+TGG - chr4_3:49403106-49403125 None:intergenic 45.0%
ACTTCATCCTGCAGATGATG+TGG - chr4_3:49403281-49403300 None:intergenic 45.0%
!! GGGAATATGCTTTTTGGGCA+AGG + chr4_3:49403355-49403374 Msa0645030:CDS 45.0%
ATCATACTGGAAGCTGAGAC+GGG + chr4_3:49403695-49403714 Msa0645030:CDS 45.0%
GATTTCCTTGGCAAACATCG+GGG + chr4_3:49403719-49403738 Msa0645030:CDS 45.0%
CGTACATGATAGGAACCAAC+AGG - chr4_3:49404099-49404118 None:intergenic 45.0%
! AAAAGGCGCATATTCCGTGT+CGG + chr4_3:49404255-49404274 Msa0645030:CDS 45.0%
! TCCGTGTCGGGTCTTTTAAA+TGG + chr4_3:49404268-49404287 Msa0645030:CDS 45.0%
GCCATTTAAAAGACCCGACA+CGG - chr4_3:49404272-49404291 None:intergenic 45.0%
CAGTTCACAGCCTTCTATGA+GGG + chr4_3:49404550-49404569 Msa0645030:CDS 45.0%
GCATGTTCTTCCCTCATAGA+AGG - chr4_3:49404563-49404582 None:intergenic 45.0%
!! GGAAGAACATGCATTGGTTC+TGG + chr4_3:49404571-49404590 Msa0645030:CDS 45.0%
!!! CTGGTGTAATTTTGGAGTCC+GGG + chr4_3:49404590-49404609 Msa0645030:CDS 45.0%
!!! TGGTGTAATTTTGGAGTCCG+GGG + chr4_3:49404591-49404610 Msa0645030:CDS 45.0%
TCCAGTATGCGCAAAAGCTT+TGG + chr4_3:49404627-49404646 Msa0645030:CDS 45.0%
! TCCAAAGCTTTTGCGCATAC+TGG - chr4_3:49404631-49404650 None:intergenic 45.0%
CACACTTCTTGCAGGTTATC+TGG - chr4_3:49404712-49404731 None:intergenic 45.0%
AGTGTGTGATTCCGCAGAAT+TGG + chr4_3:49404726-49404745 Msa0645030:CDS 45.0%
! TGCACATGCCTGCCAATTTT+CGG - chr4_3:49404839-49404858 None:intergenic 45.0%
!! CATTCTCTGACTTGCTGTAG+AGG - chr4_3:49405048-49405067 None:intergenic 45.0%
CTACAGCAAGTCAGAGAATG+AGG + chr4_3:49405048-49405067 Msa0645030:three_prime_UTR 45.0%
GATGTTAGGGGAAAGGATCA+AGG + chr4_3:49405121-49405140 Msa0645030:three_prime_UTR 45.0%
GGGGAGGCAAAACCTATTTA+TGG - chr4_3:49405197-49405216 None:intergenic 45.0%
!! AATTAAGAAAATAATATTTA+TGG - chr4_3:49401301-49401320 None:intergenic 5.0%
!!! AAATAACATTTTAATAAATA+TGG - chr4_3:49405169-49405188 None:intergenic 5.0%
TTCTTCTCGTTGCGCGATGT+AGG - chr4_3:49399681-49399700 None:intergenic 50.0%
AAGTGGACCCACGAGATTAG+AGG - chr4_3:49399763-49399782 None:intergenic 50.0%
!! GTGCAAGTCTTTTCGGTGTG+AGG + chr4_3:49400253-49400272 Msa0645030:intron 50.0%
!! CCCTCGGTTGATAGTAGGTT+AGG - chr4_3:49400350-49400369 None:intergenic 50.0%
AGGTGGTGAAGCGGAGATTA+GGG - chr4_3:49401013-49401032 None:intergenic 50.0%
! TCGGCATTGAGAGAAGGTGA+AGG - chr4_3:49401071-49401090 None:intergenic 50.0%
GCATGGAACAGCGGAGATAT+GGG - chr4_3:49401100-49401119 None:intergenic 50.0%
! ATAAGAACAGCGACTCGGAG+TGG - chr4_3:49401134-49401153 None:intergenic 50.0%
CGAGTCGCTGTTCTTATCAG+TGG + chr4_3:49401137-49401156 Msa0645030:CDS 50.0%
GTCGCTGTTCTTATCAGTGG+CGG + chr4_3:49401140-49401159 Msa0645030:CDS 50.0%
AGCAGTGCAAGAATGACCAG+CGG - chr4_3:49401201-49401220 None:intergenic 50.0%
TTCTACAGAGCGAAACACCG+TGG + chr4_3:49401641-49401660 Msa0645030:intron 50.0%
TGCCTCTGGGCATTATGCAA+AGG + chr4_3:49402701-49402720 Msa0645030:CDS 50.0%
CCATCTCATCTGCAAATGGG+TGG - chr4_3:49402731-49402750 None:intergenic 50.0%
CCACCCATTTGCAGATGAGA+TGG + chr4_3:49402728-49402747 Msa0645030:CDS 50.0%
GGGACTGAGATAGGTGTGAT+AGG - chr4_3:49403063-49403082 None:intergenic 50.0%
AGATGATGTGGCAGGAGACA+GGG - chr4_3:49403269-49403288 None:intergenic 50.0%
! AAAGGCGCATATTCCGTGTC+GGG + chr4_3:49404256-49404275 Msa0645030:CDS 50.0%
! TGCATCGAAGCTGACTTCTC+TGG - chr4_3:49404314-49404333 None:intergenic 50.0%
GAGAAGTCAGCTTCGATGCA+AGG + chr4_3:49404314-49404333 Msa0645030:CDS 50.0%
AAGTCAGCTTCGATGCAAGG+TGG + chr4_3:49404317-49404336 Msa0645030:intron 50.0%
GGACCATGTCTCACCTGAAA+AGG - chr4_3:49404427-49404446 None:intergenic 50.0%
ATGATCAAGGCCTAGCAGCT+GGG + chr4_3:49404527-49404546 Msa0645030:CDS 50.0%
GCAGTTCACAGCCTTCTATG+AGG + chr4_3:49404549-49404568 Msa0645030:CDS 50.0%
CGGAATCACACACTTCTTGC+AGG - chr4_3:49404720-49404739 None:intergenic 50.0%
GGCATGTGCACACATGTGTT+AGG + chr4_3:49404849-49404868 Msa0645030:three_prime_UTR 50.0%
!! CTAGGTACTGGTCTCCCTTA+AGG + chr4_3:49404909-49404928 Msa0645030:three_prime_UTR 50.0%
AAATGGCAGCGCGGTTGAAC+TGG + chr4_3:49400928-49400947 Msa0645030:CDS 55.0%
GAGGTGGTGAAGCGGAGATT+AGG - chr4_3:49401014-49401033 None:intergenic 55.0%
! TCGCGTTCGGCATTGAGAGA+AGG - chr4_3:49401077-49401096 None:intergenic 55.0%
GGCATGGAACAGCGGAGATA+TGG - chr4_3:49401101-49401120 None:intergenic 55.0%
TGCCAAAGACGTTTGCAGCC+AGG + chr4_3:49401415-49401434 Msa0645030:CDS 55.0%
GACCTGGCTGCAAACGTCTT+TGG - chr4_3:49401420-49401439 None:intergenic 55.0%
TACAGAGCGAAACACCGTGG+AGG + chr4_3:49401644-49401663 Msa0645030:intron 55.0%
GTGTGGTCGAACTCCGAATC+CGG + chr4_3:49402490-49402509 Msa0645030:CDS 55.0%
GCTTCAGCTGGGACTGAGAT+AGG - chr4_3:49403072-49403091 None:intergenic 55.0%
CAGATGATGTGGCAGGAGAC+AGG - chr4_3:49403270-49403289 None:intergenic 55.0%
TCTCCTGCCACATCATCTGC+AGG + chr4_3:49403271-49403290 Msa0645030:intron 55.0%
CATCCTGCAGATGATGTGGC+AGG - chr4_3:49403277-49403296 None:intergenic 55.0%
ATCTGCAGGATGAAGTCCGC+AGG + chr4_3:49403285-49403304 Msa0645030:intron 55.0%
! CGAATTTTGCGGCAAGCCTG+CGG - chr4_3:49403304-49403323 None:intergenic 55.0%
GCTGAGACGGGAGATTTCCT+TGG + chr4_3:49403707-49403726 Msa0645030:CDS 55.0%
AGAAGCCCCGATGTTTGCCA+AGG - chr4_3:49403727-49403746 None:intergenic 55.0%
TTGGCAAACATCGGGGCTTC+TGG + chr4_3:49403726-49403745 Msa0645030:CDS 55.0%
TTGGTCAACGCCAGGGTCTA+CGG + chr4_3:49403759-49403778 Msa0645030:CDS 55.0%
AGGACAAACCATGGACCTCC+AGG - chr4_3:49403788-49403807 None:intergenic 55.0%
! AGCTGACTTCTCTGGCTAGG+AGG - chr4_3:49404306-49404325 None:intergenic 55.0%
! CGAAGCTGACTTCTCTGGCT+AGG - chr4_3:49404309-49404328 None:intergenic 55.0%
CAGCTTCGATGCAAGGTGGA+TGG + chr4_3:49404321-49404340 Msa0645030:intron 55.0%
GATGATCAAGGCCTAGCAGC+TGG + chr4_3:49404526-49404545 Msa0645030:CDS 55.0%
TCCGGCATCCGAAAATTGGC+AGG + chr4_3:49404828-49404847 Msa0645030:three_prime_UTR 55.0%
! GCCTGCCAATTTTCGGATGC+CGG - chr4_3:49404832-49404851 None:intergenic 55.0%
! TACTGGTCTCCCTTAAGGCG+TGG + chr4_3:49404914-49404933 Msa0645030:three_prime_UTR 55.0%
! ACTGGTCTCCCTTAAGGCGT+GGG + chr4_3:49404915-49404934 Msa0645030:three_prime_UTR 55.0%
GCGGAGATATGGGTCGCGTT+CGG - chr4_3:49401090-49401109 None:intergenic 60.0%
TCTGCTGCGGCATGGAACAG+CGG - chr4_3:49401109-49401128 None:intergenic 60.0%
ACTCGGAGTGGCTTCTGCTG+CGG - chr4_3:49401122-49401141 None:intergenic 60.0%
AGCGGCATGAAGAAGCCGGA+GGG - chr4_3:49401183-49401202 None:intergenic 60.0%
GACCAGCGGCATGAAGAAGC+CGG - chr4_3:49401187-49401206 None:intergenic 60.0%
TACGGCTACCTGGAGGTCCA+TGG + chr4_3:49403777-49403796 Msa0645030:CDS 60.0%
CTGTGAACTGCCCAGCTGCT+AGG - chr4_3:49404540-49404559 None:intergenic 60.0%
GAGTGGCTTCTGCTGCGGCA+TGG - chr4_3:49401117-49401136 None:intergenic 65.0%
TCGACAGCAGCGTTGCCCTC+CGG + chr4_3:49401165-49401184 Msa0645030:CDS 65.0%
CAGCGGCATGAAGAAGCCGG+AGG - chr4_3:49401184-49401203 None:intergenic 65.0%
CTCCGGCTTCTTCATGCCGC+TGG + chr4_3:49401182-49401201 Msa0645030:CDS 65.0%
CTCCAGGTAGCCGTAGACCC+TGG - chr4_3:49403772-49403791 None:intergenic 65.0%
CAGGGTCTACGGCTACCTGG+AGG + chr4_3:49403770-49403789 Msa0645030:CDS 65.0%
CGCCAGGGTCTACGGCTACC+TGG + chr4_3:49403767-49403786 Msa0645030:CDS 70.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 49399661 49405253 49399661 ID=Msa0645030;Name=Msa0645030
chr4_3 mRNA 49399661 49405253 49399661 ID=Msa0645030-mRNA-1;Parent=Msa0645030;Name=Msa0645030-mRNA-1;_AED=0.08;_eAED=0.08;_QI=124|1|1|1|0.9|0.81|11|488|487
chr4_3 exon 49399661 49399707 49399661 ID=Msa0645030-mRNA-1:exon:11775;Parent=Msa0645030-mRNA-1
chr4_3 exon 49400844 49401244 49400844 ID=Msa0645030-mRNA-1:exon:11776;Parent=Msa0645030-mRNA-1
chr4_3 exon 49401362 49401436 49401362 ID=Msa0645030-mRNA-1:exon:11777;Parent=Msa0645030-mRNA-1
chr4_3 exon 49401954 49402007 49401954 ID=Msa0645030-mRNA-1:exon:11778;Parent=Msa0645030-mRNA-1
chr4_3 exon 49402464 49402542 49402464 ID=Msa0645030-mRNA-1:exon:11779;Parent=Msa0645030-mRNA-1
chr4_3 exon 49402658 49402785 49402658 ID=Msa0645030-mRNA-1:exon:11780;Parent=Msa0645030-mRNA-1
chr4_3 exon 49403040 49403123 49403040 ID=Msa0645030-mRNA-1:exon:11781;Parent=Msa0645030-mRNA-1
chr4_3 exon 49403293 49403376 49403293 ID=Msa0645030-mRNA-1:exon:11782;Parent=Msa0645030-mRNA-1
chr4_3 exon 49403647 49403798 49403647 ID=Msa0645030-mRNA-1:exon:11783;Parent=Msa0645030-mRNA-1
chr4_3 exon 49404185 49404335 49404185 ID=Msa0645030-mRNA-1:exon:11784;Parent=Msa0645030-mRNA-1
chr4_3 exon 49404433 49405253 49404433 ID=Msa0645030-mRNA-1:exon:11785;Parent=Msa0645030-mRNA-1
chr4_3 five_prime_UTR 49399661 49399707 49399661 ID=Msa0645030-mRNA-1:five_prime_utr;Parent=Msa0645030-mRNA-1
chr4_3 five_prime_UTR 49400844 49400920 49400844 ID=Msa0645030-mRNA-1:five_prime_utr;Parent=Msa0645030-mRNA-1
chr4_3 CDS 49400921 49401244 49400921 ID=Msa0645030-mRNA-1:cds;Parent=Msa0645030-mRNA-1
chr4_3 CDS 49401362 49401436 49401362 ID=Msa0645030-mRNA-1:cds;Parent=Msa0645030-mRNA-1
chr4_3 CDS 49401954 49402007 49401954 ID=Msa0645030-mRNA-1:cds;Parent=Msa0645030-mRNA-1
chr4_3 CDS 49402464 49402542 49402464 ID=Msa0645030-mRNA-1:cds;Parent=Msa0645030-mRNA-1
chr4_3 CDS 49402658 49402785 49402658 ID=Msa0645030-mRNA-1:cds;Parent=Msa0645030-mRNA-1
chr4_3 CDS 49403040 49403123 49403040 ID=Msa0645030-mRNA-1:cds;Parent=Msa0645030-mRNA-1
chr4_3 CDS 49403293 49403376 49403293 ID=Msa0645030-mRNA-1:cds;Parent=Msa0645030-mRNA-1
chr4_3 CDS 49403647 49403798 49403647 ID=Msa0645030-mRNA-1:cds;Parent=Msa0645030-mRNA-1
chr4_3 CDS 49404185 49404335 49404185 ID=Msa0645030-mRNA-1:cds;Parent=Msa0645030-mRNA-1
chr4_3 CDS 49404433 49404765 49404433 ID=Msa0645030-mRNA-1:cds;Parent=Msa0645030-mRNA-1
chr4_3 three_prime_UTR 49404766 49405253 49404766 ID=Msa0645030-mRNA-1:three_prime_utr;Parent=Msa0645030-mRNA-1
Gene Sequence

>Msa0645030

ATGTTGAAAATGGCAGCGCGGTTGAACTGGAGACCACTCTGTTCTCTCTCTCTATCTCACTTCACACACCAAAACCTCCGCAAAATAAACCCTAATCTCCGCTTCACCACCTCAAAACTATTCTGTTCCGATTCTCTTCAAACATCACCTTCACCTTCTCTCAATGCCGAACGCGACCCATATCTCCGCTGTTCCATGCCGCAGCAGAAGCCACTCCGAGTCGCTGTTCTTATCAGTGGCGGCGTCGACAGCAGCGTTGCCCTCCGGCTTCTTCATGCCGCTGGTCATTCTTGCACTGCTTTCTACCTTAAGATATGGTTCCAAGAAGATTTTGACAACTTTTGGACGGAATGTCCTTGGGAAGATGATTTGAAGTATGCCAAAGACGTTTGCAGCCAGGTTGAAGTACCATTAGAAGTTGTTCATTTGACCGATGAATATTGGAAAAACGTGGTTTCCTACATCATTGAAGAGTATAGGTGTGGTCGAACTCCGAATCCGGATGTTCTTTGCAATACAAGAATAAAGTTTGGTGCATTTTTGGATGCAATTGGTGGTATGGGTTTTGACTATGTTGCCTCTGGGCATTATGCAAAGGTTATCCACCCATTTGCAGATGAGATGGATGGACCTTCTGCTCTAGAACTATCACAAGACACGGTAAAGGATCAAACTTACTTCCTATCACACCTATCTCAGTCCCAGCTGAAGCGACTTCTTTTTCCACTTGGTTCTATTCCCAAGGATGAAGTCCGCAGGCTTGCCGCAAAATTCGATCTACCAAATAAAGATAGAAAGGATTCTCAGGGAATATGCTTTTTGGGCAAGATAAAATTCAGTGAATTTGTTGCAAGACATATTGGGGAGAAAGAAGGTATCATACTGGAAGCTGAGACGGGAGATTTCCTTGGCAAACATCGGGGCTTCTGGTTTTATACTATTGGTCAACGCCAGGGTCTACGGCTACCTGGAGGTCCATGGTATGTTGTTGAGAAGGATGTTAAAAACAATGTAGTTTTTGTGTCCAGAAATTACTTTTCCTTTGACAAAAAAAGGCGCATATTCCGTGTCGGGTCTTTTAAATGGCTTAGTGGGATGCCTCCTAGCCAGAGAAGTCAGCTTCGATGCAAGGTGAGACATGGTCCCGTGTTCTACGATTGTAGCTTAGAAATGGAACTTGGAGAAGATAACGTAATTGACTCTGCTGTCGTCCGCATATCTGAAGATGATCAAGGCCTAGCAGCTGGGCAGTTCACAGCCTTCTATGAGGGAAGAACATGCATTGGTTCTGGTGTAATTTTGGAGTCCGGGGATGATCAAAGTTTTCCAGTATGCGCAAAAGCTTTGGAAATTGCACGAATAGAAGATAAATCAAAGATTGGGAATCCAGTTAAGATAAAAGTTAAACCAGATAACCTGCAAGAAGTGTGTGATTCCGCAGAATTGGCAAGTAAAGCATCATAG
Protein sequence

>Msa0645030

MLKMAARLNWRPLCSLSLSHFTHQNLRKINPNLRFTTSKLFCSDSLQTSPSPSLNAERDPYLRCSMPQQKPLRVAVLISGGVDSSVALRLLHAAGHSCTAFYLKIWFQEDFDNFWTECPWEDDLKYAKDVCSQVEVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFLDAIGGMGFDYVASGHYAKVIHPFADEMDGPSALELSQDTVKDQTYFLSHLSQSQLKRLLFPLGSIPKDEVRRLAAKFDLPNKDRKDSQGICFLGKIKFSEFVARHIGEKEGIILEAETGDFLGKHRGFWFYTIGQRQGLRLPGGPWYVVEKDVKNNVVFVSRNYFSFDKKRRIFRVGSFKWLSGMPPSQRSQLRCKVRHGPVFYDCSLEMELGEDNVIDSAVVRISEDDQGLAAGQFTAFYEGRTCIGSGVILESGDDQSFPVCAKALEIARIEDKSKIGNPVKIKVKPDNLQEVCDSAELASKAS*