AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0141830


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0141830 MtrunA17_Chr1g0152151 96.806 501 3 1 6 506 104 591 0.0 954
Msa0141830 MtrunA17_Chr1g0152141 96.806 501 3 1 6 506 104 591 0.0 953
Msa0141830 MtrunA17_Chr5g0421251 66.977 430 129 1 3 432 91 507 0.0 582
Msa0141830 MtrunA17_Chr4g0028601 50.905 497 229 3 3 498 100 582 4.58e-157 459
Msa0141830 MtrunA17_Chr4g0043731 46.926 488 243 5 6 491 95 568 1.81e-147 434
Msa0141830 MtrunA17_Chr1g0196761 45.000 500 255 4 6 500 89 573 8.43e-142 420
Msa0141830 MtrunA17_Chr1g0196751 44.513 483 252 3 6 487 89 556 3.47e-137 408
Msa0141830 MtrunA17_Chr8g0342341 42.116 501 269 4 6 500 90 575 2.73e-129 388
Msa0141830 MtrunA17_Chr5g0421241 54.217 83 21 2 439 505 3 84 2.92e-19 82.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0141830 AT1G55490.5 89.800 500 38 1 6 505 113 599 0.0 887
Msa0141830 AT1G55490.1 89.800 500 38 1 6 505 113 599 0.0 887
Msa0141830 AT1G55490.3 89.800 500 38 1 6 505 113 599 0.0 887
Msa0141830 AT1G55490.4 89.800 500 38 1 6 505 113 599 0.0 887
Msa0141830 AT1G55490.2 89.800 500 38 1 6 505 113 599 0.0 887
Msa0141830 AT3G13470.1 88.800 500 43 1 6 505 109 595 0.0 877
Msa0141830 AT5G56500.2 87.450 502 49 2 6 506 109 597 0.0 865
Msa0141830 AT5G56500.1 87.450 502 49 2 6 506 109 597 0.0 865
Msa0141830 AT1G26230.1 66.599 494 152 1 5 498 96 576 0.0 680
Msa0141830 AT1G26230.3 66.599 494 152 1 5 498 36 516 0.0 679
Msa0141830 AT1G26230.4 66.599 494 152 1 5 498 44 524 0.0 679
Msa0141830 AT1G26230.2 64.884 430 138 1 5 434 96 512 0.0 572
Msa0141830 AT1G26230.5 63.812 362 118 1 3 364 94 442 7.85e-165 475
Msa0141830 AT2G28000.1 50.000 482 226 4 6 486 102 569 2.09e-152 447
Msa0141830 AT2G33210.1 45.603 489 250 3 6 493 89 562 5.04e-141 418
Msa0141830 AT3G23990.1 45.082 488 252 3 6 492 88 560 2.63e-139 414
Msa0141830 AT2G33210.2 45.399 489 246 4 6 493 89 557 1.55e-137 409
Msa0141830 AT3G13860.1 44.246 504 259 6 6 506 88 572 3.50e-132 395
Msa0141830 AT5G18820.1 46.232 491 247 6 6 493 89 565 2.33e-131 393
Msa0141830 AT5G18820.2 46.497 471 235 6 26 493 3 459 6.54e-126 376
Msa0141830 AT5G18820.3 43.323 337 177 3 6 341 89 412 6.36e-79 254

Find 147 sgRNAs with CRISPR-Local

Find 340 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTCTGCAATTATCAAAAT+AGG 0.166829 1_4:+574256 None:intergenic
TATCTTCCCAATTCACTTAT+AGG 0.183803 1_4:-573994 Msa0141830:CDS
AACTACTACCTCTGTTGTTT+TGG 0.233024 1_4:-576116 Msa0141830:CDS
TGAGAATATTGGTGCTAAAT+TGG 0.233906 1_4:-576182 Msa0141830:CDS
CTTGAGCTAATAATCGAAAA+AGG 0.257378 1_4:-571387 Msa0141830:three_prime_UTR
CTCGCTTTGTAACTGCTTCT+TGG 0.266078 1_4:+573851 None:intergenic
GCACTTAAGGCTCCTGGATT+TGG 0.266390 1_4:-574169 Msa0141830:CDS
AACTATTGTGGTTGTATCTT+TGG 0.272759 1_4:+573888 None:intergenic
AATCTATAAATCACCTTTGT+AGG 0.273262 1_4:+572647 None:intergenic
AACAGTACCTATAAGTGAAT+TGG 0.290145 1_4:+573987 None:intergenic
GAAGTGGCGGCTGCTTAAAA+TGG 0.296002 1_4:-571538 Msa0141830:three_prime_UTR
AAGAGAGGGAAACCTCTATT+TGG 0.307722 1_4:+573812 None:intergenic
TGGTGGTGTGGCTGTAATTC+AGG 0.336881 1_4:-573464 Msa0141830:intron
TCGCTTTGTAACTGCTTCTT+GGG 0.358585 1_4:+573852 None:intergenic
GGCCGCCAAGACAAATGATT+TGG 0.362795 1_4:-576149 Msa0141830:CDS
CCTCTGCAATTATCAAAATA+GGG 0.385162 1_4:+574257 None:intergenic
TTCCGATGTGATACACAATC+TGG 0.387303 1_4:-571492 Msa0141830:three_prime_UTR
CTGTGTTGTTGTTGAGATAA+AGG 0.387501 1_4:-571980 Msa0141830:CDS
CATAAATAGAGAAATTGTTA+TGG 0.388875 1_4:+571160 None:intergenic
GAGGGTATTGTAGTTGGTGG+TGG 0.394415 1_4:-573168 Msa0141830:CDS
ACTGAAGATTGCAGCACTTA+AGG 0.394593 1_4:-574182 Msa0141830:CDS
CTTGTTGTGAACAAACTTAG+AGG 0.403832 1_4:-574208 Msa0141830:CDS
GGCAACCCTATGGACAATTC+AGG 0.408645 1_4:-571937 Msa0141830:intron
TCCAACGACGATACGAGATA+TGG 0.410275 1_4:-572725 Msa0141830:CDS
ACAAATTAAGAACCAAATAG+AGG 0.412098 1_4:-573824 Msa0141830:intron
AGAGAAATTGTTATGGGAAC+GGG 0.412312 1_4:+571167 None:intergenic
GGATATTGAACAAGAAGCTT+TGG 0.413311 1_4:-574236 Msa0141830:CDS
AAAGCTGGGAATGAGGTTCT+AGG 0.414128 1_4:-573934 Msa0141830:CDS
AACTATTCTATACATGTTCC+TGG 0.414257 1_4:-571325 Msa0141830:three_prime_UTR
TCTGTTGAGGATCAATTAGT+TGG 0.426950 1_4:+571227 None:intergenic
GAGGATCCGGTTGAGAATAT+TGG 0.429757 1_4:-576193 Msa0141830:CDS
GATGATATTGCCATCTTGAC+AGG 0.432753 1_4:-574124 Msa0141830:CDS
GGCCTTAGCTTAGACAAAGC+TGG 0.436997 1_4:-573949 Msa0141830:CDS
GTTGAGTAAGGTTGGTAGAA+AGG 0.446649 1_4:-574586 Msa0141830:CDS
ATAAATAGAGAAATTGTTAT+GGG 0.447724 1_4:+571161 None:intergenic
TTGCGTTCAAAAGGTGGAGT+TGG 0.448665 1_4:-576215 Msa0141830:CDS
ACAGTACCTATAAGTGAATT+GGG 0.450043 1_4:+573988 None:intergenic
CTCACTGTCTGTAACAAAGT+AGG 0.452915 1_4:+574476 None:intergenic
ATTGCAGCACTTAAGGCTCC+TGG 0.453971 1_4:-574175 Msa0141830:CDS
ACAGGAGTCAGTCCTACATT+TGG 0.454551 1_4:+571443 None:intergenic
CGTTCAAAAGGTGGAGTTGG+AGG 0.454662 1_4:-576212 Msa0141830:CDS
CCAGGTGGTTAGATGTTGCT+TGG 0.456438 1_4:-572043 Msa0141830:intron
AAGTTAAAACTCAAAGGAAT+TGG 0.456754 1_4:-571273 Msa0141830:three_prime_UTR
TGTTTGCATTTGCGTTCAAA+AGG 0.459664 1_4:-576224 Msa0141830:intron
GCCTGCCAAATCATTTGTCT+TGG 0.460705 1_4:+576144 None:intergenic
TCTTATTGCAGAAGGTGTTA+AGG 0.461521 1_4:-576086 Msa0141830:intron
TGGTGCTAAATTGGTTAGAC+AGG 0.463771 1_4:-576173 Msa0141830:CDS
TTGCCAACAGGTGCAGCCTC+AGG 0.467059 1_4:+571955 None:intergenic
AAAGGTGGAGTTGGAGGATC+CGG 0.467134 1_4:-576206 Msa0141830:CDS
TTTAGTGAATTAGTTATATG+TGG 0.467491 1_4:-576264 Msa0141830:exon
GAAAGGATTGCAAAACTGTC+TGG 0.467785 1_4:-573484 Msa0141830:CDS
TGCCAAATCATTTGTCTTGG+CGG 0.470595 1_4:+576147 None:intergenic
TTAGCACCAATATTCTCAAC+CGG 0.473308 1_4:+576187 None:intergenic
AGGGTATTGTAGTTGGTGGT+GGG 0.474079 1_4:-573167 Msa0141830:CDS
GCCTTAGCTTAGACAAAGCT+GGG 0.479147 1_4:-573948 Msa0141830:CDS
TATGAAGATTTGATGTCTGC+TGG 0.479231 1_4:-572680 Msa0141830:CDS
GATAGCTGAGGCGTTGAGTA+AGG 0.484566 1_4:-574598 Msa0141830:CDS
AAAGATACAACCACAATAGT+TGG 0.489610 1_4:-573886 Msa0141830:CDS
GCAGGTTGAGGATAGTGAAT+TGG 0.491700 1_4:-574670 Msa0141830:intron
TGCAAAACTGTCTGGTGGTG+TGG 0.492146 1_4:-573476 Msa0141830:CDS
TCGATAAAAGTAAAATATGC+TGG 0.492282 1_4:+571347 None:intergenic
GTTAATAAGATCCCTTGCAT+TGG 0.496312 1_4:+574309 None:intergenic
TTAATTTCAGAGGGTAGCTA+AGG 0.496676 1_4:+572872 None:intergenic
TGGCAATATCATCAAGGTAC+TGG 0.496736 1_4:+574134 None:intergenic
ACTCTAGTTCGTTACACTAC+AGG 0.496929 1_4:+571425 None:intergenic
CTCTTGCGTTCTCCAAATCC+AGG 0.496984 1_4:+574157 None:intergenic
GTCAGTCCTACATTTGGACT+TGG 0.506256 1_4:+571449 None:intergenic
TTTGCTCAGACTTGCATCAA+AGG 0.510939 1_4:-573139 Msa0141830:CDS
TGCAGAACAAGATTATGAAA+AGG 0.511288 1_4:-573518 Msa0141830:CDS
GCCAAGACAAATGATTTGGC+AGG 0.513756 1_4:-576145 Msa0141830:CDS
TTGTCCATAGGGTTGCCAAC+AGG 0.519465 1_4:+571943 None:intergenic
TTGAGTAAGGTTGGTAGAAA+GGG 0.519613 1_4:-574585 Msa0141830:CDS
AAGTGGCGGCTGCTTAAAAT+GGG 0.519821 1_4:-571537 Msa0141830:three_prime_UTR
ACAAATGATTTGGCAGGCGA+TGG 0.521838 1_4:-576139 Msa0141830:CDS
TCCATATCTCGTATCGTCGT+TGG 0.522924 1_4:+572724 None:intergenic
CTTAGACAAAGCTGGGAATG+AGG 0.523660 1_4:-573941 Msa0141830:CDS
TCACTGTCTGTAACAAAGTA+GGG 0.525001 1_4:+574477 None:intergenic
GGTTCTAGGCACTGCGGCCA+AGG 0.525331 1_4:-573920 Msa0141830:CDS
TCCCAGCTTTGTCTAAGCTA+AGG 0.526799 1_4:+573947 None:intergenic
CCTTTAGGCCGCTGTTGAAG+AGG 0.527246 1_4:-573187 Msa0141830:intron
ATCTTTGGTGAGCACCACCT+TGG 0.533468 1_4:+573903 None:intergenic
ATACCACGTGTGATAAGCAC+AGG 0.537355 1_4:+575936 None:intergenic
GTTGAAGAGGGTATTGTAGT+TGG 0.538398 1_4:-573174 Msa0141830:CDS
AAAAGGAGAAGTTGAACGAA+AGG 0.543334 1_4:-573501 Msa0141830:CDS
GATGTGGCAGCAGTTAGTGC+AGG 0.549028 1_4:-574645 Msa0141830:CDS
TGCACCTGTTGGCAACCCTA+TGG 0.550758 1_4:-571947 Msa0141830:CDS
TTATAAACCTCCTGTCAAGA+TGG 0.550939 1_4:+574114 None:intergenic
TAGAGAAATTGTTATGGGAA+CGG 0.553391 1_4:+571166 None:intergenic
CTTTAGGCCGCTGTTGAAGA+GGG 0.553599 1_4:-573186 Msa0141830:intron
GCTCAAGGTCTTATTGCAGA+AGG 0.554354 1_4:-576094 Msa0141830:CDS
TTGCATTTGCGTTCAAAAGG+TGG 0.555133 1_4:-576221 Msa0141830:intron
TTGTTTGTGAATTAGTTATG+TGG 0.556999 1_4:-576343 None:intergenic
ACTTCCATCACCAACTATTG+TGG 0.557957 1_4:+573876 None:intergenic
CTAGAGGACGCAATTAGAAA+CGG 0.558599 1_4:-574283 Msa0141830:CDS
GAACCTGAGGCTGCACCTGT+TGG 0.558717 1_4:-571958 Msa0141830:CDS
AATAGAAAGTTAAAACTCAA+AGG 0.569335 1_4:-571279 Msa0141830:three_prime_UTR
AAACAATCTGTATGTTGTTG+AGG 0.570389 1_4:-574529 Msa0141830:CDS
AACAATCTGTATGTTGTTGA+GGG 0.571719 1_4:-574528 Msa0141830:CDS
AAAGGGTGTCGTTACACTTG+AGG 0.572247 1_4:-574568 Msa0141830:CDS
GAAGAGGGTATTGTAGTTGG+TGG 0.573873 1_4:-573171 Msa0141830:CDS
TATGGATATAATGCTGCCAC+TGG 0.574388 1_4:-572707 Msa0141830:CDS
ACTTAAACTAATGTCAAAAG+AGG 0.575994 1_4:-575883 Msa0141830:intron
GCTGAGGCGTTGAGTAAGGT+TGG 0.581310 1_4:-574594 Msa0141830:CDS
ACATACCTGAATTGTCCATA+GGG 0.583522 1_4:+571932 None:intergenic
TGGCAGTGTTGTTAGTGAGA+AGG 0.588442 1_4:-572827 Msa0141830:intron
AATGTTAGTTCATTCTGTTG+AGG 0.591770 1_4:+571214 None:intergenic
TCTAGGCACTGCGGCCAAGG+TGG 0.592690 1_4:-573917 Msa0141830:CDS
TAGGATTCGGTATGTAGAAG+TGG 0.593025 1_4:-571554 Msa0141830:exon
TGCTAAATTGGTTAGACAGG+CGG 0.595682 1_4:-576170 Msa0141830:CDS
TACATACCTGAATTGTCCAT+AGG 0.599446 1_4:+571931 None:intergenic
ACAACCACAATAGTTGGTGA+TGG 0.599514 1_4:-573880 Msa0141830:CDS
TTGGTAGTTACTGCGATCGG+CGG 0.601111 1_4:-571254 Msa0141830:three_prime_UTR
GGGTGTCGTTACACTTGAGG+AGG 0.602205 1_4:-574565 Msa0141830:CDS
GCAGGGAACAATCATGAGGT+AGG 0.602361 1_4:-574627 Msa0141830:CDS
ATGAAGATTTGATGTCTGCT+GGG 0.605666 1_4:-572679 Msa0141830:CDS
TCAAGATGGCAATATCATCA+AGG 0.606055 1_4:+574128 None:intergenic
GTAGGACCAAGTCCAAATGT+AGG 0.607962 1_4:-571455 Msa0141830:three_prime_UTR
GCTCAGACTTGCATCAAAGG+TGG 0.608186 1_4:-573136 Msa0141830:CDS
GATATTGCCATCTTGACAGG+AGG 0.609386 1_4:-574121 Msa0141830:intron
TAATTTCAGAGGGTAGCTAA+GGG 0.611417 1_4:+572873 None:intergenic
TACAATACCCTCTTCAACAG+CGG 0.611736 1_4:+573179 None:intergenic
TCGTTACACTTGAGGAGGGA+AGG 0.613492 1_4:-574560 Msa0141830:CDS
CTTGCAGTTCTCAAATTCAA+CGG 0.614107 1_4:+574446 None:intergenic
ACAAACTGAGACAGAACTCA+AGG 0.620054 1_4:-573322 Msa0141830:CDS
AGGTACTGTTATCAGAGAGG+AGG 0.632407 1_4:-573974 Msa0141830:CDS
CAAATCTTCATATTTGCCAG+TGG 0.633124 1_4:+572691 None:intergenic
GGATAGTGAATTGGCTGATG+TGG 0.636323 1_4:-574661 Msa0141830:CDS
GAATTGGTAGTTACTGCGAT+CGG 0.641932 1_4:-571257 Msa0141830:three_prime_UTR
AACCCTGTGCTTATCACACG+TGG 0.648183 1_4:-575939 Msa0141830:CDS
ACTGTTATCAGAGAGGAGGT+TGG 0.652322 1_4:-573970 Msa0141830:CDS
GAGGGCATGCAATTTGATCG+AGG 0.658220 1_4:-574510 Msa0141830:CDS
ATGTGGCAGCAGTTAGTGCA+GGG 0.658714 1_4:-574644 Msa0141830:CDS
AGACGCTCTTAACGCTACAA+AGG 0.660955 1_4:-573280 Msa0141830:intron
TGGGATCATTGATCCTACAA+AGG 0.667555 1_4:-572660 Msa0141830:intron
GGATCTTATTAACATACTAG+AGG 0.670020 1_4:-574299 Msa0141830:CDS
AACCAGATTGTGTATCACAT+CGG 0.672063 1_4:+571490 None:intergenic
GATTCGGTATGTAGAAGTGG+CGG 0.674919 1_4:-571551 Msa0141830:exon
GGTGTCGTTACACTTGAGGA+GGG 0.689354 1_4:-574564 Msa0141830:CDS
GGTAGGAAATATGATAGCTG+AGG 0.689740 1_4:-574610 Msa0141830:CDS
CGTTGAATTTGAGAACTGCA+AGG 0.697779 1_4:-574445 Msa0141830:intron
TAGTGCAGGGAACAATCATG+AGG 0.700989 1_4:-574631 Msa0141830:CDS
TATAGGTACTGTTATCAGAG+AGG 0.702894 1_4:-573977 Msa0141830:CDS
TGTTGAGATAAAGGAACCTG+AGG 0.713419 1_4:-571971 Msa0141830:CDS
AGGATTGCAAAACTGTCTGG+TGG 0.719435 1_4:-573481 Msa0141830:CDS
ACCTTGAGCCAAAACAACAG+AGG 0.725524 1_4:+576108 None:intergenic
TACCACGTGTGATAAGCACA+GGG 0.740125 1_4:+575937 None:intergenic
GAATGAGGTTCTAGGCACTG+CGG 0.821029 1_4:-573926 Msa0141830:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAGAAAAAATAAATCTTTT+TGG + chr1_4:571932-571951 None:intergenic 10.0%
!! TCATAAAAAAAGAAAAAAAA+AGG + chr1_4:572304-572323 None:intergenic 10.0%
!!! TTAAAAAATGAGAAATATTT+TGG - chr1_4:573807-573826 Msa0141830:intron 10.0%
!!! AGTTTTTTTTATTTTTCATA+TGG - chr1_4:574460-574479 Msa0141830:CDS 10.0%
!! AAAATATGATATTATATACT+AGG - chr1_4:575876-575895 Msa0141830:intron 10.0%
!!! ATTATATCACTTTATCTTTT+TGG - chr1_4:572050-572069 Msa0141830:intron 15.0%
!!! CTTATCAAATTATTTTGTAA+TGG - chr1_4:572109-572128 Msa0141830:intron 15.0%
!!! TCTTTTTTTATGAATTGAAA+TGG - chr1_4:572311-572330 Msa0141830:intron 15.0%
!!! GTTTTTGTAAATAAATAGTT+AGG - chr1_4:572524-572543 Msa0141830:intron 15.0%
!!! GTTTTTTTAGATTGATTAAT+TGG - chr1_4:572546-572565 Msa0141830:intron 15.0%
!! ACTATTAATGTAAAAAACAT+AGG + chr1_4:572720-572739 None:intergenic 15.0%
!! GATAAATTAATGAACATTAT+GGG + chr1_4:574265-574284 None:intergenic 15.0%
!!! TGTTAGTTTTGATTAAATTT+TGG - chr1_4:574969-574988 Msa0141830:intron 15.0%
!!! AATAAATGATGGTATTTTTT+TGG + chr1_4:575797-575816 None:intergenic 15.0%
!! TTTAGTGAATTAGTTATATG+TGG - chr1_4:571242-571261 Msa0141830:three_prime_UTR 20.0%
!! TAACTAATAAATGCTTGATT+TGG - chr1_4:571470-571489 Msa0141830:three_prime_UTR 20.0%
!!! AGAGTGAAATTTCATTTTAT+AGG - chr1_4:571527-571546 Msa0141830:three_prime_UTR 20.0%
!! TACACAAAAAAACAAGAAAA+CGG + chr1_4:571654-571673 None:intergenic 20.0%
!! CAAAATATGCAAAAAAATGT+GGG + chr1_4:571725-571744 None:intergenic 20.0%
!!! CACATTTTTTTGCATATTTT+GGG - chr1_4:571724-571743 Msa0141830:intron 20.0%
!!! ACATTTTTTTGCATATTTTG+GGG - chr1_4:571725-571744 Msa0141830:intron 20.0%
!!! TTTTTTCTCAATTTAGATGT+AGG - chr1_4:572134-572153 Msa0141830:intron 20.0%
!!! TTTTTCTCAATTTAGATGTA+GGG - chr1_4:572135-572154 Msa0141830:intron 20.0%
!!! GTTTACAAAAAAACAGATTT+TGG + chr1_4:572225-572244 None:intergenic 20.0%
!! CAGATTTGTAAATTATGAAA+TGG - chr1_4:572384-572403 Msa0141830:intron 20.0%
!! ATTTGTAAATTATGAAATGG+AGG - chr1_4:572387-572406 Msa0141830:intron 20.0%
!! AGTTTAAATGAAAAAGATGA+GGG + chr1_4:572791-572810 None:intergenic 20.0%
!! AAGTTTAAATGAAAAAGATG+AGG + chr1_4:572792-572811 None:intergenic 20.0%
!! AAAATGTCTACATATTATAC+AGG - chr1_4:573964-573983 Msa0141830:CDS 20.0%
!! GGATAAATTAATGAACATTA+TGG + chr1_4:574266-574285 None:intergenic 20.0%
!!! TCATTAATTTATCCTTTTAC+TGG - chr1_4:574272-574291 Msa0141830:CDS 20.0%
!!! TTTTTGCTATTAATTTCAGA+GGG + chr1_4:574646-574665 None:intergenic 20.0%
!!! TTTTTTGCTATTAATTTCAG+AGG + chr1_4:574647-574666 None:intergenic 20.0%
!! AAATTAATAGCAAAAAATGC+TGG - chr1_4:574650-574669 Msa0141830:CDS 20.0%
!! GTATAAAAATTGGCTAAATT+TGG - chr1_4:574701-574720 Msa0141830:intron 20.0%
!! ACTAGAGAAAAAAAAAATAC+AGG + chr1_4:574889-574908 None:intergenic 20.0%
!!! TAAATTAAACTTAGCTTGTA+GGG - chr1_4:574908-574927 Msa0141830:intron 20.0%
!!! CATTATAAATGGTTTGTATA+TGG - chr1_4:574938-574957 Msa0141830:intron 20.0%
!! TTCCTTAAAAAAATTGTATG+TGG - chr1_4:575052-575071 Msa0141830:intron 20.0%
!! ACTAGAACATAAAATAAATC+AGG + chr1_4:575146-575165 None:intergenic 20.0%
!!! ACGATTTTTAAAACAATTCT+TGG - chr1_4:575205-575224 Msa0141830:intron 20.0%
!! AATAGAAAGTTAAAACTCAA+AGG - chr1_4:576227-576246 Msa0141830:intron 20.0%
!!! TTTGCTTGTTGTTACATAAT+TGG - chr1_4:571494-571513 Msa0141830:three_prime_UTR 25.0%
!!! TTGCTTGTTGTTACATAATT+GGG - chr1_4:571495-571514 Msa0141830:three_prime_UTR 25.0%
! ACTTAAACTAATGTCAAAAG+AGG - chr1_4:571623-571642 Msa0141830:intron 25.0%
!! GTTTAAGCATTTTTATTCCA+CGG - chr1_4:571679-571698 Msa0141830:intron 25.0%
!! TTTAAGCATTTTTATTCCAC+GGG - chr1_4:571680-571699 Msa0141830:intron 25.0%
! CCAAAATATGCAAAAAAATG+TGG + chr1_4:571726-571745 None:intergenic 25.0%
!!! CCACATTTTTTTGCATATTT+TGG - chr1_4:571723-571742 Msa0141830:intron 25.0%
! TGTAGAAATGATAATCAATG+AGG - chr1_4:572006-572025 Msa0141830:CDS 25.0%
! GTAGAAATGATAATCAATGA+GGG - chr1_4:572007-572026 Msa0141830:CDS 25.0%
! TAGAAATGATAATCAATGAG+GGG - chr1_4:572008-572027 Msa0141830:CDS 25.0%
!!! TTTATCTTTTTGGTTGTGTA+CGG - chr1_4:572060-572079 Msa0141830:intron 25.0%
!! TTTTCTCAATTTAGATGTAG+GGG - chr1_4:572136-572155 Msa0141830:intron 25.0%
!!! AATCTGTTTTTTTGTAAACC+CGG - chr1_4:572226-572245 Msa0141830:intron 25.0%
!! TTTATTGTTTCTCAAAACTG+GGG + chr1_4:572467-572486 None:intergenic 25.0%
!! GTTTATTGTTTCTCAAAACT+GGG + chr1_4:572468-572487 None:intergenic 25.0%
! TATACAAGTGCATCTAAATA+GGG + chr1_4:572613-572632 None:intergenic 25.0%
! ATATACAAGTGCATCTAAAT+AGG + chr1_4:572614-572633 None:intergenic 25.0%
! ATTTAAACTTAGAAGAGTTG+TGG - chr1_4:572802-572821 Msa0141830:intron 25.0%
! TGGCAAAGATAATAATAAGT+TGG + chr1_4:573109-573128 None:intergenic 25.0%
!! TAAGTAAAAACACAAGTTGA+TGG + chr1_4:573129-573148 None:intergenic 25.0%
!!! TTCTTCATTTGTTCCTTTTT+TGG - chr1_4:573467-573486 Msa0141830:CDS 25.0%
! ACAAATTAAGAACCAAATAG+AGG - chr1_4:573682-573701 Msa0141830:intron 25.0%
! TTACTTATTCTTCATGTACA+AGG + chr1_4:573779-573798 None:intergenic 25.0%
!!! TTTTGTTTTGTTACGAGTAT+AGG - chr1_4:574154-574173 Msa0141830:CDS 25.0%
!! TTTTTCTTCATCATTTGCAA+GGG + chr1_4:574411-574430 None:intergenic 25.0%
!! ATGGAGATAATTTTCGTTTT+AGG - chr1_4:574479-574498 Msa0141830:CDS 25.0%
!! TAGTGAGAAGGTATAAAAAT+TGG - chr1_4:574691-574710 Msa0141830:intron 25.0%
!! TGCTGATGTAATTTGTATAT+CGG - chr1_4:574749-574768 Msa0141830:intron 25.0%
! AATCTATAAATCACCTTTGT+AGG + chr1_4:574862-574881 None:intergenic 25.0%
!!! GTAAATTAAACTTAGCTTGT+AGG - chr1_4:574907-574926 Msa0141830:intron 25.0%
! ACAAACCATTTATAATGATG+CGG + chr1_4:574935-574954 None:intergenic 25.0%
!!! CTCCACATACAATTTTTTTA+AGG + chr1_4:575057-575076 None:intergenic 25.0%
! CTTAAAAAAATTGTATGTGG+AGG - chr1_4:575055-575074 Msa0141830:intron 25.0%
!!! TATGTTCTAGTTTCTTGATT+AGG - chr1_4:575155-575174 Msa0141830:intron 25.0%
!!! ATGTTCTAGTTTCTTGATTA+GGG - chr1_4:575156-575175 Msa0141830:intron 25.0%
! ATACATTTCCATTATTGACA+CGG + chr1_4:575652-575671 None:intergenic 25.0%
! AGAGTAATAGGAATAAATGA+TGG + chr1_4:575808-575827 None:intergenic 25.0%
! CCTTAAAATTCAAGATTCTT+AGG + chr1_4:575853-575872 None:intergenic 25.0%
!! CCTAAGAATCTTGAATTTTA+AGG - chr1_4:575850-575869 Msa0141830:intron 25.0%
!! CATATTTTGTAAAACGTTGT+TGG - chr1_4:575906-575925 Msa0141830:CDS 25.0%
! TCGATAAAAGTAAAATATGC+TGG + chr1_4:576162-576181 None:intergenic 25.0%
! AAGTTAAAACTCAAAGGAAT+TGG - chr1_4:576233-576252 Msa0141830:intron 25.0%
!! TGAGAATATTGGTGCTAAAT+TGG - chr1_4:571324-571343 Msa0141830:three_prime_UTR 30.0%
!! TGCTTGTTGTTACATAATTG+GGG - chr1_4:571496-571515 Msa0141830:three_prime_UTR 30.0%
AAAAAAATGTGGGAAGTTTG+TGG + chr1_4:571715-571734 None:intergenic 30.0%
TATGAAACACAAACACCTTT+GGG - chr1_4:571828-571847 Msa0141830:intron 30.0%
CATGAACTGAACCAAATTTA+TGG - chr1_4:572170-572189 Msa0141830:intron 30.0%
ACTGAACCAAATTTATGGTT+CGG - chr1_4:572175-572194 Msa0141830:intron 30.0%
! ATTTTGAATCGTATTGAACC+GGG + chr1_4:572247-572266 None:intergenic 30.0%
! GATTTTGAATCGTATTGAAC+CGG + chr1_4:572248-572267 None:intergenic 30.0%
GGTTCAATACGATTCAAAAT+CGG - chr1_4:572247-572266 Msa0141830:intron 30.0%
!! AAAACATTAGCCTTCAATTC+TGG - chr1_4:572343-572362 Msa0141830:intron 30.0%
!! AAACATTAGCCTTCAATTCT+GGG - chr1_4:572344-572363 Msa0141830:intron 30.0%
TAATTTCAACCCAGAATTGA+AGG + chr1_4:572356-572375 None:intergenic 30.0%
AATCATATGAATAGCAGAAG+AGG - chr1_4:572417-572436 Msa0141830:intron 30.0%
ATCATATGAATAGCAGAAGA+GGG - chr1_4:572418-572437 Msa0141830:intron 30.0%
! GGTTTATTGTTTCTCAAAAC+TGG + chr1_4:572469-572488 None:intergenic 30.0%
AAGTTATAGTTCATGTGAAC+CGG - chr1_4:572574-572593 Msa0141830:intron 30.0%
ATACAAGTGCATCTAAATAG+GGG + chr1_4:572612-572631 None:intergenic 30.0%
AAACAATCTGTATGTTGTTG+AGG - chr1_4:572977-572996 Msa0141830:intron 30.0%
AACAATCTGTATGTTGTTGA+GGG - chr1_4:572978-572997 Msa0141830:intron 30.0%
ACAAAAAGATATCCAATGCA+AGG - chr1_4:573185-573204 Msa0141830:intron 30.0%
CAAAAAGATATCCAATGCAA+GGG - chr1_4:573186-573205 Msa0141830:intron 30.0%
GGATCTTATTAACATACTAG+AGG - chr1_4:573207-573226 Msa0141830:intron 30.0%
CCTCTGCAATTATCAAAATA+GGG + chr1_4:573252-573271 None:intergenic 30.0%
TCCTCTGCAATTATCAAAAT+AGG + chr1_4:573253-573272 None:intergenic 30.0%
!!! TTGTTCCTTTTTTGGTTTAG+CGG - chr1_4:573475-573494 Msa0141830:CDS 30.0%
TATCTTCCCAATTCACTTAT+AGG - chr1_4:573512-573531 Msa0141830:CDS 30.0%
ACAGTACCTATAAGTGAATT+GGG + chr1_4:573521-573540 None:intergenic 30.0%
AACAGTACCTATAAGTGAAT+TGG + chr1_4:573522-573541 None:intergenic 30.0%
AACTATTGTGGTTGTATCTT+TGG + chr1_4:573621-573640 None:intergenic 30.0%
AAAGATACAACCACAATAGT+TGG - chr1_4:573620-573639 Msa0141830:intron 30.0%
!! CCATGCAAACAATTTTTAAG+GGG + chr1_4:573738-573757 None:intergenic 30.0%
! GCCATGCAAACAATTTTTAA+GGG + chr1_4:573739-573758 None:intergenic 30.0%
! TGCCATGCAAACAATTTTTA+AGG + chr1_4:573740-573759 None:intergenic 30.0%
TGCAGAACAAGATTATGAAA+AGG - chr1_4:573988-574007 Msa0141830:CDS 30.0%
! TGATTTGCAGAGAAGTTAAA+AGG + chr1_4:574118-574137 None:intergenic 30.0%
! CTCATATTTTCTTCACCTTT+AGG - chr1_4:574304-574323 Msa0141830:CDS 30.0%
! CTTTTTCTTCATCATTTGCA+AGG + chr1_4:574412-574431 None:intergenic 30.0%
! GATGTAATTTGTATATCGGT+AGG - chr1_4:574753-574772 Msa0141830:intron 30.0%
CAAACCATTTATAATGATGC+GGG + chr1_4:574934-574953 None:intergenic 30.0%
TGATTTAAGAACCTCGTATT+TGG + chr1_4:575002-575021 None:intergenic 30.0%
TCATGCATATTGTTGCAAAA+TGG - chr1_4:575019-575038 Msa0141830:intron 30.0%
!! TAAATTTGTTGAAGTCTCAC+TGG - chr1_4:575098-575117 Msa0141830:intron 30.0%
AGTTTCTTGATTAGGGAAAT+TGG - chr1_4:575163-575182 Msa0141830:intron 30.0%
GTTTCTTGATTAGGGAAATT+GGG - chr1_4:575164-575183 Msa0141830:intron 30.0%
TTTCTTGATTAGGGAAATTG+GGG - chr1_4:575165-575184 Msa0141830:intron 30.0%
TGTATCACATCGGAAAAAAT+AGG + chr1_4:576009-576028 None:intergenic 30.0%
!!! CTGGTTGCTATTTTATTTGT+AGG - chr1_4:576033-576052 Msa0141830:intron 30.0%
CTTGAGCTAATAATCGAAAA+AGG - chr1_4:576119-576138 Msa0141830:CDS 30.0%
AACTATTCTATACATGTTCC+TGG - chr1_4:576181-576200 Msa0141830:CDS 30.0%
AATGTTAGTTCATTCTGTTG+AGG + chr1_4:576295-576314 None:intergenic 30.0%
!!! TGGAGTGTTTGTTTTGATGT+GGG - chr1_4:571183-571202 Msa0141830:three_prime_UTR 35.0%
TGTTTGCATTTGCGTTCAAA+AGG - chr1_4:571282-571301 Msa0141830:three_prime_UTR 35.0%
TTAGCACCAATATTCTCAAC+CGG + chr1_4:571322-571341 None:intergenic 35.0%
!! AACTACTACCTCTGTTGTTT+TGG - chr1_4:571390-571409 Msa0141830:three_prime_UTR 35.0%
!! TCTTATTGCAGAAGGTGTTA+AGG - chr1_4:571420-571439 Msa0141830:three_prime_UTR 35.0%
! ATTTTATAGGTTGTTGCAGC+AGG - chr1_4:571540-571559 Msa0141830:three_prime_UTR 35.0%
GTTCATTGCGTAGCAATTAT+TGG - chr1_4:571749-571768 Msa0141830:intron 35.0%
!! CAAAGGTGTTTGTGTTTCAT+AGG + chr1_4:571829-571848 None:intergenic 35.0%
CTATGAAACACAAACACCTT+TGG - chr1_4:571827-571846 Msa0141830:intron 35.0%
ACTGAACCGAACCATAAATT+TGG + chr1_4:572184-572203 None:intergenic 35.0%
TCATATGAATAGCAGAAGAG+GGG - chr1_4:572419-572438 Msa0141830:intron 35.0%
!! TTGAGTAAGGTTGGTAGAAA+GGG - chr1_4:572921-572940 Msa0141830:intron 35.0%
TCACTGTCTGTAACAAAGTA+GGG + chr1_4:573032-573051 None:intergenic 35.0%
CTTGCAGTTCTCAAATTCAA+CGG + chr1_4:573063-573082 None:intergenic 35.0%
GTTAATAAGATCCCTTGCAT+TGG + chr1_4:573200-573219 None:intergenic 35.0%
!!! CCCTATTTTGATAATTGCAG+AGG - chr1_4:573249-573268 Msa0141830:intron 35.0%
GGATATTGAACAAGAAGCTT+TGG - chr1_4:573270-573289 Msa0141830:intron 35.0%
! CTTGTTGTGAACAAACTTAG+AGG - chr1_4:573298-573317 Msa0141830:CDS 35.0%
TCAAGATGGCAATATCATCA+AGG + chr1_4:573381-573400 None:intergenic 35.0%
TTATAAACCTCCTGTCAAGA+TGG + chr1_4:573395-573414 None:intergenic 35.0%
! TATAGGTACTGTTATCAGAG+AGG - chr1_4:573529-573548 Msa0141830:intron 35.0%
!! TGCAAACAATTTTTAAGGGG+TGG + chr1_4:573735-573754 None:intergenic 35.0%
CCCCTTAAAAATTGTTTGCA+TGG - chr1_4:573735-573754 Msa0141830:intron 35.0%
TTGGAGTTATGCATAACGTT+AGG - chr1_4:573826-573845 Msa0141830:CDS 35.0%
GTATGCTGCATACATACATT+TGG + chr1_4:573873-573892 None:intergenic 35.0%
CATACGAGTGGTCATATATA+AGG - chr1_4:573888-573907 Msa0141830:CDS 35.0%
AAAAGGAGAAGTTGAACGAA+AGG - chr1_4:574005-574024 Msa0141830:CDS 35.0%
!! GTTTTGTTACGAGTATAGGT+TGG - chr1_4:574158-574177 Msa0141830:CDS 35.0%
TTATAATTAAAACGCGACGC+AGG - chr1_4:574586-574605 Msa0141830:CDS 35.0%
TAATTTCAGAGGGTAGCTAA+GGG + chr1_4:574636-574655 None:intergenic 35.0%
TTAATTTCAGAGGGTAGCTA+AGG + chr1_4:574637-574656 None:intergenic 35.0%
GCAAAAAATGCTGGTGTAAA+TGG - chr1_4:574659-574678 Msa0141830:CDS 35.0%
CAAATCTTCATATTTGCCAG+TGG + chr1_4:574818-574837 None:intergenic 35.0%
TATGAAGATTTGATGTCTGC+TGG - chr1_4:574826-574845 Msa0141830:intron 35.0%
ATGAAGATTTGATGTCTGCT+GGG - chr1_4:574827-574846 Msa0141830:intron 35.0%
AATTGTATGTGGAGGATGTT+AGG - chr1_4:575063-575082 Msa0141830:intron 35.0%
! TCTCACTGGACTTTTAATGT+GGG - chr1_4:575112-575131 Msa0141830:intron 35.0%
CTTGATACGAAACTTTGACT+TGG - chr1_4:575313-575332 Msa0141830:intron 35.0%
TAAGCATTCACACACATAGA+AGG + chr1_4:575365-575384 None:intergenic 35.0%
! CTGTGTTGTTGTTGAGATAA+AGG - chr1_4:575526-575545 Msa0141830:intron 35.0%
ACATACCTGAATTGTCCATA+GGG + chr1_4:575577-575596 None:intergenic 35.0%
TACATACCTGAATTGTCCAT+AGG + chr1_4:575578-575597 None:intergenic 35.0%
TTCTATTGCCGTGTCAATAA+TGG - chr1_4:575641-575660 Msa0141830:intron 35.0%
ACAGTTACACACAGAGTAAT+AGG + chr1_4:575820-575839 None:intergenic 35.0%
! CTTTCTTTTCTCCTAGGATT+CGG - chr1_4:575939-575958 Msa0141830:CDS 35.0%
CGGAAAAAATAGGAGGAAAA+TGG + chr1_4:575999-576018 None:intergenic 35.0%
ATCACATCGGAAAAAATAGG+AGG + chr1_4:576006-576025 None:intergenic 35.0%
AACCAGATTGTGTATCACAT+CGG + chr1_4:576019-576038 None:intergenic 35.0%
TCTGTTGAGGATCAATTAGT+TGG + chr1_4:576282-576301 None:intergenic 35.0%
!!! GTGGAGTGTTTGTTTTGATG+TGG - chr1_4:571182-571201 Msa0141830:three_prime_UTR 40.0%
!!! GGAGTGTTTGTTTTGATGTG+GGG - chr1_4:571184-571203 Msa0141830:three_prime_UTR 40.0%
!!! TGTTTTGATGTGGGGTGTTT+AGG - chr1_4:571192-571211 Msa0141830:three_prime_UTR 40.0%
!! GTTTTGATGTGGGGTGTTTA+GGG - chr1_4:571193-571212 Msa0141830:three_prime_UTR 40.0%
TTGCATTTGCGTTCAAAAGG+TGG - chr1_4:571285-571304 Msa0141830:three_prime_UTR 40.0%
! TGGTGCTAAATTGGTTAGAC+AGG - chr1_4:571333-571352 Msa0141830:three_prime_UTR 40.0%
TGCTAAATTGGTTAGACAGG+CGG - chr1_4:571336-571355 Msa0141830:three_prime_UTR 40.0%
TGCCAAATCATTTGTCTTGG+CGG + chr1_4:571362-571381 None:intergenic 40.0%
! ATTTTTATTCCACGGGCTTC+TGG - chr1_4:571687-571706 Msa0141830:intron 40.0%
! TATGAAGCACTAACGCCTTT+GGG - chr1_4:571780-571799 Msa0141830:intron 40.0%
GCTAAGCAATGTAATCCCAA+AGG + chr1_4:571798-571817 None:intergenic 40.0%
!! ACACAAACACCTTTGGGATT+AGG - chr1_4:571834-571853 Msa0141830:intron 40.0%
TCTTTGCTTCAACATGCCTT+AGG - chr1_4:571947-571966 Msa0141830:CDS 40.0%
!! ATGTGTTCAAGGAGTACCTA+AGG + chr1_4:571966-571985 None:intergenic 40.0%
TACTCCTTGAACACATCTGT+GGG - chr1_4:571970-571989 Msa0141830:CDS 40.0%
GGTTGTGTACGGATAAATGA+AGG - chr1_4:572071-572090 Msa0141830:intron 40.0%
ACGATTCAAAATCGGTGAAC+TGG - chr1_4:572255-572274 Msa0141830:intron 40.0%
! ATAGGGGTGTGCATAAAAAC+CGG + chr1_4:572596-572615 None:intergenic 40.0%
TATAACACACACACACACAC+AGG - chr1_4:572685-572704 Msa0141830:CDS 40.0%
CAACATGTCTGCATCATGTT+AGG - chr1_4:572742-572761 Msa0141830:intron 40.0%
GGTAGGAAATATGATAGCTG+AGG - chr1_4:572896-572915 Msa0141830:CDS 40.0%
!! GTTGAGTAAGGTTGGTAGAA+AGG - chr1_4:572920-572939 Msa0141830:intron 40.0%
CTCACTGTCTGTAACAAAGT+AGG + chr1_4:573033-573052 None:intergenic 40.0%
CGTTGAATTTGAGAACTGCA+AGG - chr1_4:573061-573080 Msa0141830:intron 40.0%
CTAGAGGACGCAATTAGAAA+CGG - chr1_4:573223-573242 Msa0141830:intron 40.0%
ACTGAAGATTGCAGCACTTA+AGG - chr1_4:573324-573343 Msa0141830:CDS 40.0%
TGGCAATATCATCAAGGTAC+TGG + chr1_4:573375-573394 None:intergenic 40.0%
GATGATATTGCCATCTTGAC+AGG - chr1_4:573382-573401 Msa0141830:intron 40.0%
!!! TCCTTTTTTGGTTTAGCGGT+TGG - chr1_4:573479-573498 Msa0141830:CDS 40.0%
ACCAACCGCTAAACCAAAAA+AGG + chr1_4:573483-573502 None:intergenic 40.0%
!! ACAACCACAATAGTTGGTGA+TGG - chr1_4:573626-573645 Msa0141830:intron 40.0%
ACTTCCATCACCAACTATTG+TGG + chr1_4:573633-573652 None:intergenic 40.0%
TCGCTTTGTAACTGCTTCTT+GGG + chr1_4:573657-573676 None:intergenic 40.0%
AAGAGAGGGAAACCTCTATT+TGG + chr1_4:573697-573716 None:intergenic 40.0%
!! ATTTTTAAGGGGTGGAGAGA+CGG + chr1_4:573727-573746 None:intergenic 40.0%
GAAAGGATTGCAAAACTGTC+TGG - chr1_4:574022-574041 Msa0141830:intron 40.0%
ACAAACTGAGACAGAACTCA+AGG - chr1_4:574184-574203 Msa0141830:CDS 40.0%
GAGCTTATCGAACCAGTAAA+AGG + chr1_4:574287-574306 None:intergenic 40.0%
TACAATACCCTCTTCAACAG+CGG + chr1_4:574330-574349 None:intergenic 40.0%
!! GTTGAAGAGGGTATTGTAGT+TGG - chr1_4:574332-574351 Msa0141830:CDS 40.0%
TTTGCTCAGACTTGCATCAA+AGG - chr1_4:574367-574386 Msa0141830:intron 40.0%
TATGGATATAATGCTGCCAC+TGG - chr1_4:574799-574818 Msa0141830:intron 40.0%
TGGGATCATTGATCCTACAA+AGG - chr1_4:574846-574865 Msa0141830:intron 40.0%
TTGGTTTCGTACCAAATACG+AGG - chr1_4:574988-575007 Msa0141830:intron 40.0%
! GTCTCACTGGACTTTTAATG+TGG - chr1_4:575111-575130 Msa0141830:intron 40.0%
AGGCAGAAACATGCACAATA+AGG + chr1_4:575237-575256 None:intergenic 40.0%
TAAGCATTCACACGCATAGA+AGG + chr1_4:575257-575276 None:intergenic 40.0%
AGGCAGAAACATGCACAATA+AGG + chr1_4:575237-575256 None:intergenic 40.0%
TGTTGAGATAAAGGAACCTG+AGG - chr1_4:575535-575554 Msa0141830:intron 40.0%
CGAATCCTAGGAGAAAAGAA+AGG + chr1_4:575941-575960 None:intergenic 40.0%
ACTTCTACATACCGAATCCT+AGG + chr1_4:575953-575972 None:intergenic 40.0%
! TAGGATTCGGTATGTAGAAG+TGG - chr1_4:575952-575971 Msa0141830:CDS 40.0%
TTCCGATGTGATACACAATC+TGG - chr1_4:576014-576033 Msa0141830:intron 40.0%
! ACTCTAGTTCGTTACACTAC+AGG + chr1_4:576084-576103 None:intergenic 40.0%
CATGTTCCTGGAAAAAAGCT+TGG - chr1_4:576193-576212 Msa0141830:CDS 40.0%
! GAATTGGTAGTTACTGCGAT+CGG - chr1_4:576249-576268 Msa0141830:intron 40.0%
TTGCGTTCAAAAGGTGGAGT+TGG - chr1_4:571291-571310 Msa0141830:three_prime_UTR 45.0%
GAGGATCCGGTTGAGAATAT+TGG - chr1_4:571313-571332 Msa0141830:three_prime_UTR 45.0%
! GCCAAGACAAATGATTTGGC+AGG - chr1_4:571361-571380 Msa0141830:three_prime_UTR 45.0%
GCCTGCCAAATCATTTGTCT+TGG + chr1_4:571365-571384 None:intergenic 45.0%
! ACAAATGATTTGGCAGGCGA+TGG - chr1_4:571367-571386 Msa0141830:three_prime_UTR 45.0%
!!! ACCTCTGTTGTTTTGGCTCA+AGG - chr1_4:571397-571416 Msa0141830:three_prime_UTR 45.0%
ACCTTGAGCCAAAACAACAG+AGG + chr1_4:571401-571420 None:intergenic 45.0%
!! GCTCAAGGTCTTATTGCAGA+AGG - chr1_4:571412-571431 Msa0141830:three_prime_UTR 45.0%
TACCACGTGTGATAAGCACA+GGG + chr1_4:571572-571591 None:intergenic 45.0%
ATACCACGTGTGATAAGCAC+AGG + chr1_4:571573-571592 None:intergenic 45.0%
! CTATGAAGCACTAACGCCTT+TGG - chr1_4:571779-571798 Msa0141830:intron 45.0%
GAGACAAAGCCTAATCCCAA+AGG + chr1_4:571846-571865 None:intergenic 45.0%
GTACTCCTTGAACACATCTG+TGG - chr1_4:571969-571988 Msa0141830:CDS 45.0%
ACTCCTTGAACACATCTGTG+GGG - chr1_4:571971-571990 Msa0141830:CDS 45.0%
TAACCCCACAGATGTGTTCA+AGG + chr1_4:571977-571996 None:intergenic 45.0%
! TTTAGATGTAGGGGTGTGCA+TGG - chr1_4:572145-572164 Msa0141830:intron 45.0%
CAGAAGAGGGGTTGTGAAAT+GGG - chr1_4:572431-572450 Msa0141830:intron 45.0%
GTTGTGGTTGTGTGAATTGC+AGG - chr1_4:572818-572837 Msa0141830:intron 45.0%
GTTGTGTGAATTGCAGGTTG+AGG - chr1_4:572824-572843 Msa0141830:intron 45.0%
! GCAGGTTGAGGATAGTGAAT+TGG - chr1_4:572836-572855 Msa0141830:CDS 45.0%
GGATAGTGAATTGGCTGATG+TGG - chr1_4:572845-572864 Msa0141830:CDS 45.0%
TAGTGCAGGGAACAATCATG+AGG - chr1_4:572875-572894 Msa0141830:CDS 45.0%
!! AAAGGGTGTCGTTACACTTG+AGG - chr1_4:572938-572957 Msa0141830:intron 45.0%
GATATTGCCATCTTGACAGG+AGG - chr1_4:573385-573404 Msa0141830:intron 45.0%
! AGGTACTGTTATCAGAGAGG+AGG - chr1_4:573532-573551 Msa0141830:intron 45.0%
ACTGTTATCAGAGAGGAGGT+TGG - chr1_4:573536-573555 Msa0141830:intron 45.0%
GCCTTAGCTTAGACAAAGCT+GGG - chr1_4:573558-573577 Msa0141830:intron 45.0%
! TCCCAGCTTTGTCTAAGCTA+AGG + chr1_4:573562-573581 None:intergenic 45.0%
CTTAGACAAAGCTGGGAATG+AGG - chr1_4:573565-573584 Msa0141830:intron 45.0%
AAAGCTGGGAATGAGGTTCT+AGG - chr1_4:573572-573591 Msa0141830:intron 45.0%
CTCGCTTTGTAACTGCTTCT+TGG + chr1_4:573658-573677 None:intergenic 45.0%
!! TTTTTAAGGGGTGGAGAGAC+GGG + chr1_4:573726-573745 None:intergenic 45.0%
GTATGTATGCAGCATACGAG+TGG - chr1_4:573876-573895 Msa0141830:CDS 45.0%
AGGATTGCAAAACTGTCTGG+TGG - chr1_4:574025-574044 Msa0141830:intron 45.0%
AGACGCTCTTAACGCTACAA+AGG - chr1_4:574226-574245 Msa0141830:CDS 45.0%
!! GAAGAGGGTATTGTAGTTGG+TGG - chr1_4:574335-574354 Msa0141830:CDS 45.0%
!! AGGGTATTGTAGTTGGTGGT+GGG - chr1_4:574339-574358 Msa0141830:intron 45.0%
AATTAAAACGCGACGCAGGT+TGG - chr1_4:574590-574609 Msa0141830:CDS 45.0%
! TGGCAGTGTTGTTAGTGAGA+AGG - chr1_4:574679-574698 Msa0141830:intron 45.0%
TCCAACGACGATACGAGATA+TGG - chr1_4:574781-574800 Msa0141830:intron 45.0%
TCCATATCTCGTATCGTCGT+TGG + chr1_4:574785-574804 None:intergenic 45.0%
AGGGCCCGCATCATTATAAA+TGG - chr1_4:574927-574946 Msa0141830:intron 45.0%
! GAAGCATCCTAATCTTGTCC+AGG - chr1_4:575445-575464 Msa0141830:intron 45.0%
CTAACCACCTGGACAAGATT+AGG + chr1_4:575455-575474 None:intergenic 45.0%
CATTCGAATCGTCGAGTTTG+CGG - chr1_4:575609-575628 Msa0141830:intron 45.0%
! CTCTGCCTTTCTTTTCTCCT+AGG - chr1_4:575933-575952 Msa0141830:CDS 45.0%
! GATTCGGTATGTAGAAGTGG+CGG - chr1_4:575955-575974 Msa0141830:CDS 45.0%
AAGTGGCGGCTGCTTAAAAT+GGG - chr1_4:575969-575988 Msa0141830:intron 45.0%
GTAGGACCAAGTCCAAATGT+AGG - chr1_4:576051-576070 Msa0141830:intron 45.0%
GTCAGTCCTACATTTGGACT+TGG + chr1_4:576060-576079 None:intergenic 45.0%
ACAGGAGTCAGTCCTACATT+TGG + chr1_4:576066-576085 None:intergenic 45.0%
!!! AGCTCTCCAAGCTTTTTTCC+AGG + chr1_4:576202-576221 None:intergenic 45.0%
!!! TTAAAATTTTAAAAACAATT+TGG + chr1_4:572490-572509 None:intergenic 5.0%
!!! TTGTTTTTAAAATTTTAAAT+TGG - chr1_4:572492-572511 Msa0141830:intron 5.0%
CGTTCAAAAGGTGGAGTTGG+AGG - chr1_4:571294-571313 Msa0141830:three_prime_UTR 50.0%
AAAGGTGGAGTTGGAGGATC+CGG - chr1_4:571300-571319 Msa0141830:three_prime_UTR 50.0%
GGCCGCCAAGACAAATGATT+TGG - chr1_4:571357-571376 Msa0141830:three_prime_UTR 50.0%
AACCCTGTGCTTATCACACG+TGG - chr1_4:571567-571586 Msa0141830:intron 50.0%
GCAGAAGAGGGGTTGTGAAA+TGG - chr1_4:572430-572449 Msa0141830:intron 50.0%
GAGGGGTTGTGAAATGGGTA+CGG - chr1_4:572436-572455 Msa0141830:intron 50.0%
ATGTGGCAGCAGTTAGTGCA+GGG - chr1_4:572862-572881 Msa0141830:CDS 50.0%
GCAGGGAACAATCATGAGGT+AGG - chr1_4:572879-572898 Msa0141830:CDS 50.0%
!! GATAGCTGAGGCGTTGAGTA+AGG - chr1_4:572908-572927 Msa0141830:intron 50.0%
!! GGTGTCGTTACACTTGAGGA+GGG - chr1_4:572942-572961 Msa0141830:intron 50.0%
TCGTTACACTTGAGGAGGGA+AGG - chr1_4:572946-572965 Msa0141830:intron 50.0%
! GAGGGCATGCAATTTGATCG+AGG - chr1_4:572996-573015 Msa0141830:intron 50.0%
ATTGCAGCACTTAAGGCTCC+TGG - chr1_4:573331-573350 Msa0141830:CDS 50.0%
GCACTTAAGGCTCCTGGATT+TGG - chr1_4:573337-573356 Msa0141830:intron 50.0%
CTCTTGCGTTCTCCAAATCC+AGG + chr1_4:573352-573371 None:intergenic 50.0%
GGCCTTAGCTTAGACAAAGC+TGG - chr1_4:573557-573576 Msa0141830:intron 50.0%
!! GAATGAGGTTCTAGGCACTG+CGG - chr1_4:573580-573599 Msa0141830:intron 50.0%
ATCTTTGGTGAGCACCACCT+TGG + chr1_4:573606-573625 None:intergenic 50.0%
GAGACGGGGAAAGAAAGAGA+GGG + chr1_4:573711-573730 None:intergenic 50.0%
AGAGACGGGGAAAGAAAGAG+AGG + chr1_4:573712-573731 None:intergenic 50.0%
!! TTTTAAGGGGTGGAGAGACG+GGG + chr1_4:573725-573744 None:intergenic 50.0%
! TGCAAAACTGTCTGGTGGTG+TGG - chr1_4:574030-574049 Msa0141830:intron 50.0%
! TGGTGGTGTGGCTGTAATTC+AGG - chr1_4:574042-574061 Msa0141830:intron 50.0%
CTTTAGGCCGCTGTTGAAGA+GGG - chr1_4:574320-574339 Msa0141830:CDS 50.0%
!! GAGGGTATTGTAGTTGGTGG+TGG - chr1_4:574338-574357 Msa0141830:intron 50.0%
GCTCAGACTTGCATCAAAGG+TGG - chr1_4:574370-574389 Msa0141830:intron 50.0%
GCATCCTAATCTTGTCCAGG+TGG - chr1_4:575448-575467 Msa0141830:intron 50.0%
CCAAGCAACATCTAACCACC+TGG + chr1_4:575466-575485 None:intergenic 50.0%
CCAGGTGGTTAGATGTTGCT+TGG - chr1_4:575463-575482 Msa0141830:intron 50.0%
TTGTCCATAGGGTTGCCAAC+AGG + chr1_4:575566-575585 None:intergenic 50.0%
GGCAACCCTATGGACAATTC+AGG - chr1_4:575569-575588 Msa0141830:intron 50.0%
GAAGTGGCGGCTGCTTAAAA+TGG - chr1_4:575968-575987 Msa0141830:intron 50.0%
! TTGGTAGTTACTGCGATCGG+CGG - chr1_4:576252-576271 Msa0141830:intron 50.0%
TTTGTGGTACCAGAAGCCCG+TGG + chr1_4:571699-571718 None:intergenic 55.0%
GATGTGGCAGCAGTTAGTGC+AGG - chr1_4:572861-572880 Msa0141830:CDS 55.0%
!! GCTGAGGCGTTGAGTAAGGT+TGG - chr1_4:572912-572931 Msa0141830:intron 55.0%
!! GGGTGTCGTTACACTTGAGG+AGG - chr1_4:572941-572960 Msa0141830:intron 55.0%
CCTCTTCAACAGCGGCCTAA+AGG + chr1_4:574322-574341 None:intergenic 55.0%
CCTTTAGGCCGCTGTTGAAG+AGG - chr1_4:574319-574338 Msa0141830:CDS 55.0%
TGCACCTGTTGGCAACCCTA+TGG - chr1_4:575559-575578 Msa0141830:intron 55.0%
GCAACGACGCATGTCGGACA+TGG + chr1_4:571868-571887 None:intergenic 60.0%
GTCCGACATGCGTCGTTGCA+CGG - chr1_4:571869-571888 Msa0141830:intron 60.0%
TGCCGTGCAACGACGCATGT+CGG + chr1_4:571874-571893 None:intergenic 60.0%
GAACCTGAGGCTGCACCTGT+TGG - chr1_4:575548-575567 Msa0141830:intron 60.0%
TTGCCAACAGGTGCAGCCTC+AGG + chr1_4:575554-575573 None:intergenic 60.0%
!! GGTTCTAGGCACTGCGGCCA+AGG - chr1_4:573586-573605 Msa0141830:intron 65.0%
! TCTAGGCACTGCGGCCAAGG+TGG - chr1_4:573589-573608 Msa0141830:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 571168 576360 571168 ID=Msa0141830;Name=Msa0141830
chr1_4 mRNA 571168 576360 571168 ID=Msa0141830-mRNA-1;Parent=Msa0141830;Name=Msa0141830-mRNA-1;_AED=0.08;_eAED=0.08;_QI=91|0.91|0.92|1|0.83|0.76|13|392|506
chr1_4 exon 571168 571573 571168 ID=Msa0141830-mRNA-1:exon:92;Parent=Msa0141830-mRNA-1
chr1_4 exon 571938 572061 571938 ID=Msa0141830-mRNA-1:exon:91;Parent=Msa0141830-mRNA-1
chr1_4 exon 572661 572753 572661 ID=Msa0141830-mRNA-1:exon:90;Parent=Msa0141830-mRNA-1
chr1_4 exon 572828 572920 572828 ID=Msa0141830-mRNA-1:exon:89;Parent=Msa0141830-mRNA-1
chr1_4 exon 573098 573202 573098 ID=Msa0141830-mRNA-1:exon:88;Parent=Msa0141830-mRNA-1
chr1_4 exon 573281 573352 573281 ID=Msa0141830-mRNA-1:exon:87;Parent=Msa0141830-mRNA-1
chr1_4 exon 573465 573542 573465 ID=Msa0141830-mRNA-1:exon:86;Parent=Msa0141830-mRNA-1
chr1_4 exon 573825 574033 573825 ID=Msa0141830-mRNA-1:exon:85;Parent=Msa0141830-mRNA-1
chr1_4 exon 574122 574356 574122 ID=Msa0141830-mRNA-1:exon:84;Parent=Msa0141830-mRNA-1
chr1_4 exon 574446 574688 574446 ID=Msa0141830-mRNA-1:exon:83;Parent=Msa0141830-mRNA-1
chr1_4 exon 575884 575979 575884 ID=Msa0141830-mRNA-1:exon:82;Parent=Msa0141830-mRNA-1
chr1_4 exon 576087 576237 576087 ID=Msa0141830-mRNA-1:exon:81;Parent=Msa0141830-mRNA-1
chr1_4 exon 576262 576360 576262 ID=Msa0141830-mRNA-1:exon:80;Parent=Msa0141830-mRNA-1
chr1_4 five_prime_UTR 576270 576360 576270 ID=Msa0141830-mRNA-1:five_prime_utr;Parent=Msa0141830-mRNA-1
chr1_4 CDS 576262 576269 576262 ID=Msa0141830-mRNA-1:cds;Parent=Msa0141830-mRNA-1
chr1_4 CDS 576087 576237 576087 ID=Msa0141830-mRNA-1:cds;Parent=Msa0141830-mRNA-1
chr1_4 CDS 575884 575979 575884 ID=Msa0141830-mRNA-1:cds;Parent=Msa0141830-mRNA-1
chr1_4 CDS 574446 574688 574446 ID=Msa0141830-mRNA-1:cds;Parent=Msa0141830-mRNA-1
chr1_4 CDS 574122 574356 574122 ID=Msa0141830-mRNA-1:cds;Parent=Msa0141830-mRNA-1
chr1_4 CDS 573825 574033 573825 ID=Msa0141830-mRNA-1:cds;Parent=Msa0141830-mRNA-1
chr1_4 CDS 573465 573542 573465 ID=Msa0141830-mRNA-1:cds;Parent=Msa0141830-mRNA-1
chr1_4 CDS 573281 573352 573281 ID=Msa0141830-mRNA-1:cds;Parent=Msa0141830-mRNA-1
chr1_4 CDS 573098 573202 573098 ID=Msa0141830-mRNA-1:cds;Parent=Msa0141830-mRNA-1
chr1_4 CDS 572828 572920 572828 ID=Msa0141830-mRNA-1:cds;Parent=Msa0141830-mRNA-1
chr1_4 CDS 572661 572753 572661 ID=Msa0141830-mRNA-1:cds;Parent=Msa0141830-mRNA-1
chr1_4 CDS 571938 572061 571938 ID=Msa0141830-mRNA-1:cds;Parent=Msa0141830-mRNA-1
chr1_4 CDS 571560 571573 571560 ID=Msa0141830-mRNA-1:cds;Parent=Msa0141830-mRNA-1
chr1_4 three_prime_UTR 571168 571559 571168 ID=Msa0141830-mRNA-1:three_prime_utr;Parent=Msa0141830-mRNA-1
Gene Sequence

>Msa0141830

ATGTGGTGTTGCGTTCAAAAGGTGGAGTTGGAGGATCCGGTTGAGAATATTGGTGCTAAATTGGTTAGACAGGCGGCCGCCAAGACAAATGATTTGGCAGGCGATGGAACTACTACCTCTGTTGTTTTGGCTCAAGGTCTTATTGCAGAAGGTGTTAAGGTTGTTGCAGCAGGTGCAAACCCTGTGCTTATCACACGTGGTATTGAGAAGACAGCGAAAGCTCTTGTCGCTGAACTTAAACTAATGTCAAAAGAGGTTGAGGATAGTGAATTGGCTGATGTGGCAGCAGTTAGTGCAGGGAACAATCATGAGGTAGGAAATATGATAGCTGAGGCGTTGAGTAAGGTTGGTAGAAAGGGTGTCGTTACACTTGAGGAGGGAAGGAGTGCTGAAAACAATCTGTATGTTGTTGAGGGCATGCAATTTGATCGAGGATATATTTCACCCTACTTTGTTACAGACAGTGAGAAAATGACCGTTGAATTTGAGAACTGCAAGTTGCTTTTAGTTGACAAAAAGATATCCAATGCAAGGGATCTTATTAACATACTAGAGGACGCAATTAGAAACGGATTCCCTATTTTGATAATTGCAGAGGATATTGAACAAGAAGCTTTGGCAACTCTTGTTGTGAACAAACTTAGAGGATCACTGAAGATTGCAGCACTTAAGGCTCCTGGATTTGGAGAACGCAAGAGCCAGTACCTTGATGATATTGCCATCTTGACAGGAGCGGTTGGTAACAATATATATCTTCCCAATTCACTTATAGGTACTGTTATCAGAGAGGAGGTTGGCCTTAGCTTAGACAAAGCTGGGAATGAGGTTCTAGGCACTGCGGCCAAGGTGGTGCTCACCAAAGATACAACCACAATAGTTGGTGATGGAAGTACCCAAGAAGCAGTTACAAAGCGAGTTTCACAAATTAAGAACCAAATAGAGGCTGCAGAACAAGATTATGAAAAGGAGAAGTTGAACGAAAGGATTGCAAAACTGTCTGGTGGTGTGGCTGTAATTCAGGTTGGTGCACAAACTGAGACAGAACTCAAGGAAAAGAAATTGAGAGTTGAAGACGCTCTTAACGCTACAAAGGCCGCTGTTGAAGAGGGTATTGTAGTTGGTGGTGGGTGCACTTTGCTCAGACTTGCATCAAAGGTGGATGCAATCAAAGCTACCCTTGCAAATGATGAAGAAAAAGTTGGAGCAGACATTGTTAAAAGAGCCCTTAGCTACCCTCTGAAATTAATAGCAAAAAATGCTGGTGTAAATGGCAGTGTTGTTAGTGAGAAGGTTCTATCCAACGACGATACGAGATATGGATATAATGCTGCCACTGGCAAATATGAAGATTTGATGTCTGCTGGGATCATTGATCCTACAAAGGTGGTTAGATGTTGCTTGGAACATGCAGCGTCTGTTGCGAAAACATTCTTAATGTCAGACTGTGTTGTTGTTGAGATAAAGGAACCTGAGGCTGCACCTGTTGGCAACCCTATGGACAATTCAGGATTCGGTATGTAG

Protein sequence

>Msa0141830

MWCCVQKVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRGIEKTAKALVAELKLMSKEVEDSELADVAAVSAGNNHEVGNMIAEALSKVGRKGVVTLEEGRSAENNLYVVEGMQFDRGYISPYFVTDSEKMTVEFENCKLLLVDKKISNARDLINILEDAIRNGFPILIIAEDIEQEALATLVVNKLRGSLKIAALKAPGFGERKSQYLDDIAILTGAVGNNIYLPNSLIGTVIREEVGLSLDKAGNEVLGTAAKVVLTKDTTTIVGDGSTQEAVTKRVSQIKNQIEAAEQDYEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLASKVDAIKATLANDEEKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSNDDTRYGYNAATGKYEDLMSAGIIDPTKVVRCCLEHAASVAKTFLMSDCVVVEIKEPEAAPVGNPMDNSGFGM*