AlfalfaGEDB | Msa1049410

M. sativa cultivar zhongmu-4 / Msa1049410

KEGG: -
GO: GO:0001510 GO:0002128 GO:0002938 GO:0003674 GO:0003824 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008168 GO:0008171 GO:0008173 GO:0008175 GO:0008757 GO:0009020 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016423 GO:0016740 GO:0016741 GO:0030488 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0071704 GO:0090304 GO:0106050 GO:0140098 GO:0140101 GO:1901360
PFAM: PF00588.22

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1049410	sp\|O67577\|TRMH_AQUAE	31.088	193	129	3	108	298	6	196	6.49e-25	102

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1049410	G7L451	97.826	322	6	1	1	321	1	322	0.0	654

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001950	Msa1049410	0.823205	1.569757e-53	-8.615850e-47
Msa0003470	Msa1049410	0.839662	1.385788e-57	-8.615850e-47
Msa0008850	Msa1049410	0.800715	1.265519e-48	-8.615850e-47
Msa0017120	Msa1049410	0.814357	1.605729e-51	-8.615850e-47
Msa0017940	Msa1049410	0.810281	1.246077e-50	-8.615850e-47
Msa0024680	Msa1049410	0.874520	6.332936e-68	-8.615850e-47
Msa0027540	Msa1049410	0.862001	6.903966e-64	-8.615850e-47
Msa0028060	Msa1049410	0.805980	1.027238e-49	-8.615850e-47
Msa0029620	Msa1049410	0.808544	2.939215e-50	-8.615850e-47
Msa0030000	Msa1049410	0.835774	1.379563e-56	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1049410	MtrunA17_Chr7g0218321	97.826	322	6	1	1	321	1	322	0.0	654

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1049410	AT5G15390.1	58.261	345	113	7	1	316	1	343	1.46e-133	384
Msa1049410	AT5G15390.2	54.198	262	89	7	1	233	1	260	5.01e-87	262

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Find 104 sgRNAs with CRISPR-Local

Find 269 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATCCTATCACAAACAGCA+TGG	0.670020	7_2:-12747322	None:intergenic
AACAGAAGCATGTCATTCTA+TGG	0.305770	7_2:-12748085	None:intergenic
AACATCCTCACTTCCAACGA+AGG	0.621948	7_2:+12744372	Msa1049410:CDS
AATAGCGGCGGTTTGTGGTG+TGG	0.634221	7_2:-12744325	None:intergenic
AATGGTTAGATATTGAACTT+TGG	0.437349	7_2:+12746581	Msa1049410:CDS
AATGTTTGTCTTGTTGTTGA+AGG	0.409274	7_2:+12744591	Msa1049410:CDS
ACAGGGTTTACAGATGAGAA+TGG	0.551086	7_2:+12748054	Msa1049410:three_prime_UTR
ACTGCAGTATTCCAATGAAA+GGG	0.590576	7_2:+12747252	Msa1049410:CDS
AGAGAGTGATGAACACAACA+TGG	0.703852	7_2:-12744229	None:intergenic
AGAGGGTTTGAATTTGAAGG+TGG	0.531658	7_2:-12744253	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTTGAGGTGAAATTTGATAA+TGG	+	chr7_2:12744724-12744743	Msa1049410:intron	30.0%
AGCACTTATAGTAGAAAAGA+CGG	+	chr7_2:12744830-12744849	Msa1049410:intron	30.0%
GGATCTAAAGATTAATGAGT+TGG	+	chr7_2:12744896-12744915	Msa1049410:intron	30.0%
TATAGCGTAATTTGATTCAG+TGG	+	chr7_2:12744945-12744964	Msa1049410:intron	30.0%
ATGTAACCATGGAAAATGTT+CGG	+	chr7_2:12745091-12745110	Msa1049410:intron	30.0%
TAACTGGTGCTTGAAATTAT+AGG	+	chr7_2:12745193-12745212	Msa1049410:intron	30.0%
TGAAATTGCAATGTTGTAGA+TGG	+	chr7_2:12745264-12745283	Msa1049410:intron	30.0%
TAGAAAAGATGGTGAAAACT+AGG	+	chr7_2:12745348-12745367	Msa1049410:intron	30.0%
AGATCTAGAGATTAATGAGT+TGG	+	chr7_2:12745503-12745522	Msa1049410:intron	30.0%
TAGAACATTATGGCGTAATT+TGG	+	chr7_2:12745544-12745563	Msa1049410:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_2	gene	12744168	12748339	12744168	ID=Msa1049410;Name=Msa1049410
chr7_2	mRNA	12744168	12748339	12744168	ID=Msa1049410-mRNA-1;Parent=Msa1049410;Name=Msa1049410-mRNA-1;_AED=0.06;_eAED=0.06;_QI=45\|1\|1\|1\|1\|1\|5\|437\|321
chr7_2	exon	12744168	12744709	12744168	ID=Msa1049410-mRNA-1:exon:3179;Parent=Msa1049410-mRNA-1
chr7_2	exon	12746543	12746681	12746543	ID=Msa1049410-mRNA-1:exon:3180;Parent=Msa1049410-mRNA-1
chr7_2	exon	12746841	12746902	12746841	ID=Msa1049410-mRNA-1:exon:3181;Parent=Msa1049410-mRNA-1
chr7_2	exon	12747214	12747352	12747214	ID=Msa1049410-mRNA-1:exon:3182;Parent=Msa1049410-mRNA-1
chr7_2	exon	12747774	12748339	12747774	ID=Msa1049410-mRNA-1:exon:3183;Parent=Msa1049410-mRNA-1
chr7_2	five_prime_UTR	12744168	12744212	12744168	ID=Msa1049410-mRNA-1:five_prime_utr;Parent=Msa1049410-mRNA-1
chr7_2	CDS	12744213	12744709	12744213	ID=Msa1049410-mRNA-1:cds;Parent=Msa1049410-mRNA-1
chr7_2	CDS	12746543	12746681	12746543	ID=Msa1049410-mRNA-1:cds;Parent=Msa1049410-mRNA-1
chr7_2	CDS	12746841	12746902	12746841	ID=Msa1049410-mRNA-1:cds;Parent=Msa1049410-mRNA-1
chr7_2	CDS	12747214	12747352	12747214	ID=Msa1049410-mRNA-1:cds;Parent=Msa1049410-mRNA-1
chr7_2	CDS	12747774	12747902	12747774	ID=Msa1049410-mRNA-1:cds;Parent=Msa1049410-mRNA-1
chr7_2	three_prime_UTR	12747903	12748339	12747903	ID=Msa1049410-mRNA-1:three_prime_utr;Parent=Msa1049410-mRNA-1

Gene Sequence

>Msa1049410

ATGAGCAGTTGTAAAACCATGTTGTGTTCATCACTCTCTTCCACCTTCAAATTCAAACCCTCTCTCTCCTCTTCTCTCCGCCGCCACAAATCCACCTCACGATGCTGCTACACCACACCACAAACCGCCGCTATTCCTCAACCAAACGACACCATCCACAACATCCTCACTTCCAACGAAGGTGTCACAACCCTCATGAAAATGCAACGAAAACCACTTCATCACCAATCTCAAACTCGGTGGTTCCCTTACCTTGACAGTTTTCGATGCGAAAATGGTTGCGAGGTTACTAGTTCTGAAGTTATTGAAGCTGTTGGGCCATGTATTTCTGAAACGAGGAAGGAGAGATTTGGAAAAGCGGTTTTGAATCGAAGCTATAATGTTTGTCTTGTTGTTGAAGGGTTGTGTGATTTTGGAAATGTTTCGGCGGCTTTTCGGTCTGCTGATGCTCTTGGTGTTCAGTCTGTTCATGTTGTTTCGTCTGATGCTAACAAAAGGTATAAGGACAATCGCCATGTAAGCATGGGTGCGGAGAAATGGTTAGATATTGAACTTTGGGACTCTACAAAGGAGTGCTTTGAAATGTTGAAATCACGTGGTTATCGAATTGCAACGACTCATGTGGGAATCGATGCGGTTTCTATCTATGACATGGACTGGTCCTGTCCAACTGCAATAGTAGTCGGGAACGAAAATAGGGGTATTAGTGACGAGGCTTTGGCAATGTCAGATTTGCACTGCAGTATTCCAATGAAAGGGATGGTGGACTCTTTCAATGTTTCAGTTGCTGCAGGAATCCTCATGCACCATGCTGTTTGTGATAGGATTTCTCGCACGGGCCGTCATGGGGATTTGACAGTTGAAGAAAGACAAATTCTACTGGCAGAGTTTTCGCTGCGTCATAGCAATAGTGTGATCAGTGTTGTCGAAGATTATGCAAATCGCAAGGCATCATTATTGACCTAG

Protein sequence

>Msa1049410

MSSCKTMLCSSLSSTFKFKPSLSSSLRRHKSTSRCCYTTPQTAAIPQPNDTIHNILTSNEGVTTLMKMQRKPLHHQSQTRWFPYLDSFRCENGCEVTSSEVIEAVGPCISETRKERFGKAVLNRSYNVCLVVEGLCDFGNVSAAFRSADALGVQSVHVVSSDANKRYKDNRHVSMGAEKWLDIELWDSTKECFEMLKSRGYRIATTHVGIDAVSIYDMDWSCPTAIVVGNENRGISDEALAMSDLHCSIPMKGMVDSFNVSVAAGILMHHAVCDRISRTGRHGDLTVEERQILLAEFSLRHSNSVISVVEDYANRKASLLT*