AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1463860


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1463860 MtrunA17_Chr4g0042111 94.840 562 29 0 1 562 1 562 0.0 1122
Msa1463860 MtrunA17_Chr7g0236991 56.273 542 234 2 22 562 14 553 0.0 652
Msa1463860 MtrunA17_Chr7g0237001 56.273 542 234 2 22 562 14 553 0.0 651
Msa1463860 MtrunA17_Chr7g0237041 56.273 542 234 2 22 562 14 553 0.0 651
Msa1463860 MtrunA17_Chr7g0237081 56.273 542 234 2 22 562 14 553 0.0 651
Msa1463860 MtrunA17_Chr7g0237051 56.273 542 234 2 22 562 14 553 0.0 651
Msa1463860 MtrunA17_Chr3g0105071 55.914 558 242 3 7 562 2 557 0.0 647
Msa1463860 MtrunA17_Chr5g0425371 55.556 549 240 3 16 562 7 553 0.0 647
Msa1463860 MtrunA17_Chr4g0024691 56.727 550 235 2 14 562 14 561 0.0 645
Msa1463860 MtrunA17_Chr6g0451711 54.281 549 249 2 15 562 10 557 0.0 639
Msa1463860 MtrunA17_Chr5g0431571 55.941 547 237 3 18 562 5 549 0.0 639
Msa1463860 MtrunA17_Chr3g0082691 54.595 555 248 3 10 562 1 553 0.0 637
Msa1463860 MtrunA17_Chr6g0465911 54.399 557 248 3 7 562 2 553 0.0 635
Msa1463860 MtrunA17_Chr6g0466051 54.219 557 249 3 7 562 2 553 0.0 634
Msa1463860 MtrunA17_Chr5g0431651 54.098 549 249 3 16 562 5 552 0.0 628
Msa1463860 MtrunA17_Chr6g0465441 52.727 550 256 3 15 562 6 553 0.0 624
Msa1463860 MtrunA17_Chr7g0236961 57.551 490 208 0 73 562 9 498 0.0 611
Msa1463860 MtrunA17_Chr7g0237011 57.551 490 208 0 73 562 9 498 0.0 610
Msa1463860 MtrunA17_Chr6g0465851 54.808 520 232 2 44 562 1 518 0.0 602
Msa1463860 MtrunA17_Chr2g0319041 45.730 562 291 10 8 562 3 557 3.04e-176 509
Msa1463860 MtrunA17_Chr7g0236971 57.357 401 171 0 162 562 1 401 2.35e-174 498
Msa1463860 MtrunA17_Chr8g0336181 46.558 552 284 8 18 562 9 556 1.02e-172 500
Msa1463860 MtrunA17_Chr2g0319051 45.946 518 272 7 49 562 1 514 3.57e-165 479
Msa1463860 MtrunA17_Chr6g0465981 56.878 378 157 3 7 383 2 374 5.45e-154 446
Msa1463860 MtrunA17_Chr6g0465871 56.878 378 157 3 7 383 2 374 5.45e-154 446
Msa1463860 MtrunA17_Chr6g0466081 56.878 378 157 3 7 383 2 374 5.45e-154 446
Msa1463860 MtrunA17_Chr6g0466111 57.771 341 141 2 44 383 1 339 4.07e-141 411
Msa1463860 MtrunA17_Chr7g0236951 60.125 321 126 1 63 383 1 319 7.29e-141 410
Msa1463860 MtrunA17_Chr7g0237031 60.125 321 126 1 63 383 1 319 1.14e-140 409
Msa1463860 MtrunA17_Chr6g0465931 57.478 341 142 2 44 383 1 339 5.71e-140 409
Msa1463860 MtrunA17_Chr4g0008621 46.778 419 211 6 8 416 2 418 8.55e-135 399
Msa1463860 MtrunA17_Chr4g0023911 37.906 554 337 5 7 559 31 578 1.23e-124 378
Msa1463860 MtrunA17_Chr2g0310331 38.321 548 323 9 18 561 49 585 1.11e-116 358
Msa1463860 MtrunA17_Chr2g0319071 38.791 513 262 10 51 559 22 486 1.57e-114 349
Msa1463860 MtrunA17_Chr8g0357411 36.182 550 341 5 15 562 48 589 7.56e-112 345
Msa1463860 MtrunA17_Chr2g0323131 36.454 502 304 6 41 539 55 544 6.25e-109 337
Msa1463860 MtrunA17_Chr2g0323151 37.931 464 275 5 79 539 6 459 6.32e-105 324
Msa1463860 MtrunA17_Chr5g0445511 61.233 227 88 0 158 384 2 228 3.64e-101 305
Msa1463860 MtrunA17_Chr6g0466031 50.000 260 130 0 303 562 1 260 6.06e-91 280
Msa1463860 MtrunA17_Chr4g0048911 34.151 489 308 9 58 539 60 541 1.81e-89 286
Msa1463860 MtrunA17_Chr2g0310401 37.150 428 266 2 136 561 5 431 2.87e-89 281
Msa1463860 MtrunA17_Chr4g0048921 35.579 475 299 4 72 542 82 553 9.41e-89 285
Msa1463860 MtrunA17_Chr7g0237061 48.846 260 110 2 303 562 1 237 3.65e-82 256
Msa1463860 MtrunA17_Chr7g0237071 60.309 194 77 0 73 266 9 202 1.62e-77 244
Msa1463860 MtrunA17_Chr2g0280581 29.480 519 350 9 50 558 6 518 3.98e-77 253
Msa1463860 MtrunA17_Chr2g0319081 38.393 336 187 8 230 562 109 427 2.52e-73 240
Msa1463860 MtrunA17_Chr2g0319081 40.580 138 77 4 1 136 1 135 2.38e-21 97.1
Msa1463860 MtrunA17_Chr3g0108941 29.435 496 333 8 50 535 6 494 8.59e-73 241
Msa1463860 MtrunA17_Chr3g0108981 30.407 467 312 7 79 535 6 469 2.45e-72 239
Msa1463860 MtrunA17_Chr3g0108961 30.407 467 312 7 79 535 6 469 2.45e-72 239
Msa1463860 MtrunA17_Chr3g0109001 30.040 496 330 9 50 535 6 494 6.11e-72 239
Msa1463860 MtrunA17_Chr3g0105691 29.651 516 341 11 50 552 39 545 5.20e-71 237
Msa1463860 MtrunA17_Chr3g0109021 29.659 499 327 11 50 535 6 493 6.18e-70 234
Msa1463860 MtrunA17_Chr3g0109031 29.234 496 333 10 50 535 6 493 2.10e-69 232
Msa1463860 MtrunA17_Chr3g0109011 30.043 466 314 7 79 535 6 468 4.32e-69 231
Msa1463860 MtrunA17_Chr3g0099031 30.382 497 326 11 50 535 6 493 6.64e-69 231
Msa1463860 MtrunA17_Chr3g0108991 29.234 496 333 10 50 535 6 493 3.32e-68 229
Msa1463860 MtrunA17_Chr3g0108951 29.234 496 333 10 50 535 6 493 3.32e-68 229
Msa1463860 MtrunA17_Chr6g0466021 53.171 205 90 3 7 210 2 201 7.95e-68 218
Msa1463860 MtrunA17_Chr3g0108971 30.407 467 311 9 79 535 6 468 2.31e-67 226
Msa1463860 MtrunA17_Chr6g0477111 29.072 485 330 7 79 552 6 487 7.20e-67 225
Msa1463860 MtrunA17_Chr7g0237021 51.163 172 84 0 391 562 1 172 4.15e-59 194
Msa1463860 MtrunA17_Chr7g0236941 51.163 172 84 0 391 562 1 172 4.15e-59 194
Msa1463860 MtrunA17_Chr6g0477121 29.529 403 277 5 139 535 10 411 4.55e-58 199
Msa1463860 MtrunA17_Chr5g0445501 49.419 172 87 0 391 562 1 172 8.19e-58 191
Msa1463860 MtrunA17_Chr7g0217361 36.000 300 191 1 261 559 8 307 1.54e-56 192
Msa1463860 MtrunA17_Chr6g0465881 48.256 172 89 0 391 562 1 172 1.01e-54 182
Msa1463860 MtrunA17_Chr6g0465941 48.256 172 89 0 391 562 1 172 1.17e-54 182
Msa1463860 MtrunA17_Chr6g0466121 48.256 172 89 0 391 562 1 172 1.17e-54 182
Msa1463860 MtrunA17_Chr6g0465991 48.256 172 89 0 391 562 1 172 1.17e-54 182
Msa1463860 MtrunA17_Chr6g0466091 48.256 172 89 0 391 562 1 172 1.17e-54 182
Msa1463860 MtrunA17_Chr8g0357231 34.363 259 168 2 304 561 1 258 1.28e-46 164
Msa1463860 MtrunA17_Chr7g0236921 48.101 158 78 1 409 562 1 158 5.65e-46 159
Msa1463860 MtrunA17_Chr8g0357221 38.400 250 146 3 15 263 48 290 1.76e-43 156
Msa1463860 MtrunA17_Chr7g0236931 46.104 154 80 1 409 562 1 151 3.66e-42 148
Msa1463860 MtrunA17_Chr7g0233861 52.308 130 53 1 207 336 38 158 1.58e-41 147
Msa1463860 MtrunA17_Chr2g0310121 28.150 508 322 17 79 553 278 775 9.90e-39 151
Msa1463860 MtrunA17_Chr3g0101681 28.544 522 314 20 79 558 279 783 2.56e-37 147
Msa1463860 MtrunA17_Chr7g0236981 48.760 121 59 2 22 141 14 132 2.32e-33 124
Msa1463860 MtrunA17_Chr5g0445401 59.140 93 36 2 173 263 2 94 7.22e-28 107
Msa1463860 MtrunA17_Chr7g0218001 28.617 311 177 8 65 348 335 627 6.78e-23 103
Msa1463860 MtrunA17_Chr5g0445521 48.980 98 47 2 7 103 2 97 1.62e-22 92.4
Msa1463860 MtrunA17_Chr3g0082711 40.517 116 52 1 447 562 1 99 3.27e-22 91.7
Msa1463860 MtrunA17_Chr7g0217351 30.412 194 129 3 74 264 83 273 1.60e-21 95.1
Msa1463860 MtrunA17_Chr7g0259881 26.241 282 180 7 65 319 218 498 1.77e-21 98.6
Msa1463860 MtrunA17_Chr2g0281651 24.825 286 204 7 239 519 43 322 3.74e-17 84.0
Msa1463860 MtrunA17_Chr2g0310411 41.379 116 59 5 21 136 57 163 1.03e-16 78.2
Msa1463860 MtrunA17_Chr7g0218041 30.705 241 142 6 124 340 1 240 4.39e-14 74.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1463860 AT5G23960.2 42.701 548 308 4 17 562 2 545 1.33e-156 459
Msa1463860 AT5G23960.1 42.727 550 307 5 17 562 2 547 2.81e-155 456
Msa1463860 AT3G14490.1 40.143 558 323 6 11 562 49 601 1.04e-140 420
Msa1463860 AT1G70080.1 37.590 556 337 7 11 558 54 607 8.92e-130 392
Msa1463860 AT3G14540.1 36.563 547 338 4 21 562 59 601 4.10e-127 385
Msa1463860 AT3G14520.1 36.197 547 340 4 21 562 62 604 4.34e-127 385
Msa1463860 AT1G31950.1 35.846 544 340 4 24 562 67 606 1.64e-125 381
Msa1463860 AT1G31950.3 35.780 545 340 5 24 562 67 607 2.98e-124 378
Msa1463860 AT3G32030.1 37.011 562 338 8 11 562 49 604 4.49e-123 375
Msa1463860 AT5G44630.1 37.640 534 325 6 32 559 23 554 1.81e-119 364
Msa1463860 AT1G33750.1 34.813 563 360 4 2 562 46 603 8.38e-119 364
Msa1463860 AT3G29410.1 35.531 546 343 6 21 562 63 603 2.20e-118 363
Msa1463860 AT3G29410.2 35.259 502 318 4 63 562 2 498 8.29e-111 340
Msa1463860 AT4G20200.1 36.015 522 328 4 45 562 85 604 4.60e-108 336
Msa1463860 AT4G15870.1 33.993 556 345 8 10 558 54 594 1.45e-107 335
Msa1463860 AT4G16730.1 33.270 529 331 7 48 562 19 539 3.53e-107 332
Msa1463860 AT4G20210.1 31.915 564 374 5 3 562 43 600 2.78e-106 332
Msa1463860 AT4G13300.1 35.382 537 331 6 32 559 22 551 7.64e-105 326
Msa1463860 AT4G16730.2 33.333 495 317 4 79 562 1 493 1.65e-104 323
Msa1463860 AT3G14540.2 36.865 453 278 3 21 469 59 507 1.25e-102 319
Msa1463860 AT4G20230.2 34.023 532 344 6 32 558 84 613 8.77e-102 320
Msa1463860 AT4G20230.1 34.023 532 344 6 32 558 72 601 1.01e-101 320
Msa1463860 AT3G29190.1 33.581 539 344 6 32 562 69 601 1.29e-101 319
Msa1463860 AT4G13280.2 35.460 533 336 6 32 559 22 551 1.50e-101 318
Msa1463860 AT2G23230.2 34.307 548 351 8 6 546 39 584 5.44e-101 318
Msa1463860 AT2G23230.1 34.124 548 347 9 6 546 39 579 7.34e-99 312
Msa1463860 AT1G48800.1 33.092 553 361 6 12 558 53 602 1.05e-98 312
Msa1463860 AT1G31950.2 36.018 447 277 4 24 465 67 509 1.27e-98 309
Msa1463860 AT1G66020.1 33.710 531 346 4 32 558 66 594 5.14e-97 307
Msa1463860 AT4G16740.1 32.671 554 347 11 21 562 25 564 3.01e-96 304
Msa1463860 AT3G25820.1 31.325 581 361 12 5 562 29 594 4.13e-96 305
Msa1463860 AT3G25830.1 31.325 581 361 12 5 562 29 594 4.13e-96 305
Msa1463860 AT3G29110.1 32.772 534 353 5 29 558 62 593 1.31e-95 303
Msa1463860 AT2G24210.1 32.635 573 345 13 13 562 36 590 1.74e-95 303
Msa1463860 AT1G61680.1 33.811 488 309 6 58 539 77 556 2.26e-93 297
Msa1463860 AT1G61680.2 33.607 488 303 7 58 539 77 549 2.24e-91 291
Msa1463860 AT3G25810.1 32.095 592 345 16 5 562 29 597 3.05e-90 290
Msa1463860 AT4G13280.1 33.959 533 314 7 32 559 22 521 5.98e-90 286
Msa1463860 AT1G48820.1 32.240 549 311 11 21 558 62 560 4.89e-81 265
Msa1463860 AT5G48110.1 38.484 343 206 5 221 562 1 339 1.63e-78 251
Msa1463860 AT3G25820.2 33.741 409 246 7 5 399 29 426 1.12e-71 236
Msa1463860 AT4G16740.2 35.544 377 224 7 21 387 25 392 5.61e-70 231
Msa1463860 AT1G66020.2 36.103 349 217 4 32 376 66 412 1.21e-67 225
Msa1463860 AT3G25820.4 35.838 346 197 7 5 336 29 363 1.43e-61 208
Msa1463860 AT3G25820.3 35.838 346 197 7 5 336 29 363 1.43e-61 208
Msa1463860 AT4G16740.4 37.730 326 184 7 21 336 25 341 4.85e-61 206
Msa1463860 AT4G16740.3 37.730 326 184 7 21 336 25 341 4.85e-61 206
Msa1463860 AT1G79460.1 24.606 508 340 16 78 556 276 769 1.69e-29 124
Msa1463860 AT1G61120.1 22.649 521 365 14 65 559 273 781 8.34e-26 112
Msa1463860 AT4G02780.1 30.824 279 161 8 65 314 320 595 2.68e-24 108

Find 109 sgRNAs with CRISPR-Local

Find 209 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGCAAATTGAAATCTAATT+TGG 0.157846 tig0043697:-3815 Msa1463860:intergenic
AGATGAAGCATTGACAATTT+TGG 0.158357 tig0043697:-4778 Msa1463860:intergenic
GATGATATATATGATGTTTA+TGG 0.206526 tig0043697:+4133 Msa1463860:CDS
CACAATAATCATGTTGAAAA+TGG 0.211729 tig0043697:+2971 Msa1463860:CDS
GAGAAATCGGAGTTGGTATT+AGG 0.224064 tig0043697:-1956 Msa1463860:intergenic
ATTCAATTGCACTTGTCTTT+AGG 0.255161 tig0043697:+3020 Msa1463860:CDS
CAAAGTCCCTTTACTCATAT+TGG 0.261866 tig0043697:-5216 Msa1463860:intergenic
CAAATTACCACCCCAACATT+TGG 0.286981 tig0043697:+1990 Msa1463860:CDS
AAATTACCACCCCAACATTT+GGG 0.288674 tig0043697:+1991 Msa1463860:CDS
CCAAGACATATTGAATAAAA+AGG 0.295172 tig0043697:-2018 Msa1463860:intergenic
GTCATTCTTTGTTGATCCTT+GGG 0.305154 tig0043697:-5166 Msa1463860:intergenic
AGAGGCTTTGGCACTTGAAT+TGG 0.307687 tig0043697:-5072 Msa1463860:intergenic
GATTGATTCAATCCAACGTT+TGG 0.313958 tig0043697:+2898 Msa1463860:CDS
GACAAACTAGCCATTGAAAT+AGG 0.327953 tig0043697:+5321 Msa1463860:three_prime_UTR
AGAAATCGGAGTTGGTATTA+GGG 0.328348 tig0043697:-1955 Msa1463860:intergenic
TGTCATTCTTTGTTGATCCT+TGG 0.335528 tig0043697:-5167 Msa1463860:intergenic
GAATAGTTGAAGCTTACTTT+TGG 0.351708 tig0043697:+4029 Msa1463860:CDS
GCTCTTGGAATAGTAAATTC+TGG 0.365262 tig0043697:+4672 Msa1463860:CDS
TTTGTGCTTGATTACCTCAT+TGG 0.372285 tig0043697:-4832 Msa1463860:intergenic
CACTTGTCTTTAGGTTACTA+AGG 0.384876 tig0043697:+3029 Msa1463860:CDS
TCTTCTTATGCCTATTTCAA+TGG 0.389051 tig0043697:-5331 Msa1463860:intergenic
GCCATGTACTCTTCTATTGT+TGG 0.400220 tig0043697:-4651 Msa1463860:intergenic
TTTGGATGTTTATGAAGAAA+TGG 0.403778 tig0043697:+4352 Msa1463860:CDS
ATTGATTCAATCCAACGTTT+GGG 0.408878 tig0043697:+2899 Msa1463860:CDS
CTCAATACTCTGTTGGTAGA+AGG 0.414840 tig0043697:+4074 Msa1463860:CDS
CAAGAACTTGCCTAGGCTAC+TGG 0.415662 tig0043697:+3729 Msa1463860:CDS
GCATTACATTTCCACTTATG+AGG 0.423418 tig0043697:+3756 Msa1463860:CDS
TCCATGTCCAATATGAGTAA+AGG 0.424065 tig0043697:+5209 Msa1463860:exon
TCAATATGTCTTGGAACCTA+TGG 0.434054 tig0043697:+2027 Msa1463860:CDS
GCCACACATATGAGGATTCA+TGG 0.435188 tig0043697:+3589 Msa1463860:CDS
TCAAATTAGCTTCCCTCAAA+GGG 0.439126 tig0043697:-2877 Msa1463860:intergenic
AACAACATCCTTCGTTGGAA+TGG 0.440069 tig0043697:+4710 Msa1463860:CDS
CTCCGATTTCTCTAGACGTT+CGG 0.441215 tig0043697:+1967 Msa1463860:CDS
CCATGTCCAATATGAGTAAA+GGG 0.444601 tig0043697:+5210 Msa1463860:exon
CCCTTTACTCATATTGGACA+TGG 0.445169 tig0043697:-5210 Msa1463860:intergenic
TTAATTTCTGTAGCAAGAAA+AGG 0.447664 tig0043697:-3682 Msa1463860:intergenic
TGCCGAACGTCTAGAGAAAT+CGG 0.450185 tig0043697:-1969 Msa1463860:intergenic
ATAGAAGAGTACATGGCTCT+TGG 0.456178 tig0043697:+4657 Msa1463860:CDS
ACTATTCTGTTGCGAGCAAA+AGG 0.456530 tig0043697:-4013 Msa1463860:intergenic
ACAACATCCTTCGTTGGAAT+GGG 0.463666 tig0043697:+4711 Msa1463860:CDS
ATTGATGTGCTTTATAAAGA+TGG 0.464933 tig0043697:+5126 Msa1463860:CDS
CATACTTTACTGAGGCTCAA+TGG 0.470064 tig0043697:+4610 Msa1463860:CDS
AAAATGTCACAAACCCTTTG+AGG 0.477504 tig0043697:+2864 Msa1463860:CDS
AAACAACATCAGAAAGAAGT+TGG 0.478105 tig0043697:+3841 Msa1463860:CDS
TGTATGAAGCCACACATATG+AGG 0.482529 tig0043697:+3581 Msa1463860:CDS
ATCAAATTAGCTTCCCTCAA+AGG 0.485801 tig0043697:-2878 Msa1463860:intergenic
ACTCGCATAAGGAGAGGCTT+TGG 0.486941 tig0043697:-5084 Msa1463860:intergenic
ATCTAAAATTGCTAGACTCA+TGG 0.490115 tig0043697:+4797 Msa1463860:CDS
GAGCCTCAGTAAAGTATGCC+TGG 0.491242 tig0043697:-4605 Msa1463860:intergenic
CAAGACAAGTCACAAATGCT+TGG 0.491285 tig0043697:+5022 Msa1463860:CDS
TGCACAATAGATGAAAAGAT+TGG 0.497980 tig0043697:+4581 Msa1463860:intron
CAATGTCATGCTCAAAATGA+TGG 0.500528 tig0043697:-2928 Msa1463860:intergenic
AACTTCAAAGAAACACTTGT+TGG 0.503713 tig0043697:+3535 Msa1463860:CDS
TTCTTCATAAACATCCAAAA+CGG 0.505524 tig0043697:-4348 Msa1463860:intergenic
AGAGGGATCTTCCTCATAAG+TGG 0.512911 tig0043697:-3767 Msa1463860:intergenic
TAATGCCTTGCCAGTAGCCT+AGG 0.520942 tig0043697:-3739 Msa1463860:intergenic
AAATGTCACAAACCCTTTGA+GGG 0.523712 tig0043697:+2865 Msa1463860:CDS
ATTGAGTGGTCATCATTTCA+AGG 0.523890 tig0043697:-3654 Msa1463860:intergenic
TCGGAGTTGGTATTAGGGGT+TGG 0.524425 tig0043697:-1950 Msa1463860:intergenic
GAAATCGGAGTTGGTATTAG+GGG 0.527233 tig0043697:-1954 Msa1463860:intergenic
TTTGAGCCTCAATACTCTGT+TGG 0.527980 tig0043697:+4067 Msa1463860:CDS
TAGCAAAATTTCATGTATTG+TGG 0.530446 tig0043697:-4320 Msa1463860:intergenic
ATCATCAATTACTGAGGCCA+AGG 0.530914 tig0043697:-4116 Msa1463860:intergenic
ACAAATTGAGAACTCGCATA+AGG 0.532358 tig0043697:-5095 Msa1463860:intergenic
AAGAAGTTCAAGAATGAGCA+AGG 0.540053 tig0043697:+3511 Msa1463860:CDS
ATCACAACAACATCCTTCGT+TGG 0.542322 tig0043697:+4705 Msa1463860:CDS
ATAGATGAAAAGATTGGTCC+AGG 0.544707 tig0043697:+4587 Msa1463860:intron
ACAAGTCACAAATGCTTGGA+AGG 0.546592 tig0043697:+5026 Msa1463860:CDS
AATGACCAAGGTGATATCCT+TGG 0.547258 tig0043697:+4099 Msa1463860:CDS
TTTGAGCAAGAGAGAGGGCA+TGG 0.551451 tig0043697:+4931 Msa1463860:CDS
AGACAAGTGCAATTGAATGA+AGG 0.552478 tig0043697:-3015 Msa1463860:intergenic
TAGGTGGGATATAAGTTGCA+TGG 0.561499 tig0043697:+4289 Msa1463860:intron
AGCAAAGTTGCATCATGAGA+GGG 0.572891 tig0043697:-3784 Msa1463860:intergenic
AATTAGTTTGAGCAAGAGAG+AGG 0.573171 tig0043697:+4925 Msa1463860:intron
GGATGATATTGTTTCCAATG+AGG 0.573519 tig0043697:+4818 Msa1463860:CDS
AACACTTGTTGGTGATGTTG+AGG 0.576884 tig0043697:+3546 Msa1463860:CDS
ACACTTGTTGGTGATGTTGA+GGG 0.577847 tig0043697:+3547 Msa1463860:CDS
TGAAGAAATGGAGCAAGAGA+TGG 0.580004 tig0043697:+4364 Msa1463860:CDS
CACTCTTCAAGAACTTGCCT+AGG 0.581377 tig0043697:+3722 Msa1463860:CDS
ATTACCACCCCAACATTTGG+GGG 0.583067 tig0043697:+1993 Msa1463860:CDS
AATTACCACCCCAACATTTG+GGG 0.585116 tig0043697:+1992 Msa1463860:CDS
ACCAACAATAGAAGAGTACA+TGG 0.590550 tig0043697:+4650 Msa1463860:CDS
TCCATGAATCCTCATATGTG+TGG 0.591257 tig0043697:-3590 Msa1463860:intergenic
ATTAGTTTGAGCAAGAGAGA+GGG 0.599571 tig0043697:+4926 Msa1463860:intron
CTTCTACCAACAGAGTATTG+AGG 0.601314 tig0043697:-4073 Msa1463860:intergenic
TAGCAAAGTTGCATCATGAG+AGG 0.612571 tig0043697:-3785 Msa1463860:intergenic
GGGATGCATTGCTACAGAAG+AGG 0.614970 tig0043697:+4731 Msa1463860:CDS
GAGCAAGAGATGGTCAAGGA+AGG 0.615004 tig0043697:+4374 Msa1463860:CDS
CTAGGCAAGTTCTTGAAGAG+TGG 0.622912 tig0043697:-3721 Msa1463860:intergenic
ACGTCTAGAGAAATCGGAGT+TGG 0.629425 tig0043697:-1963 Msa1463860:intergenic
AATGCATCCCATTCCAACGA+AGG 0.632549 tig0043697:-4718 Msa1463860:intergenic
GATGGTATAATCCCAAACGT+TGG 0.633632 tig0043697:-2910 Msa1463860:intergenic
ACATATGAGGATTCATGGAG+AGG 0.637251 tig0043697:+3594 Msa1463860:CDS
TTACCACCCCAACATTTGGG+GGG 0.640939 tig0043697:+1994 Msa1463860:CDS
TTTAGGTTACTAAGGCAACA+AGG 0.641189 tig0043697:+3037 Msa1463860:CDS
AAATTAATCATAGCTTAAAG+CGG 0.641455 tig0043697:+3698 Msa1463860:CDS
GGTCATCATTTCAAGGTGTG+AGG 0.643197 tig0043697:-3647 Msa1463860:intergenic
TGAGGCCAAGGATATCACCT+TGG 0.643385 tig0043697:-4104 Msa1463860:intergenic
GATTGCTATACTAACTCCCA+AGG 0.653661 tig0043697:+5150 Msa1463860:CDS
AAGAAAAGGACTCAATTGAG+TGG 0.658799 tig0043697:-3668 Msa1463860:intergenic
AATGGAGCAAGAGATGGTCA+AGG 0.660378 tig0043697:+4370 Msa1463860:CDS
TTGAGAACTCGCATAAGGAG+AGG 0.660485 tig0043697:-5090 Msa1463860:intergenic
ACTTGCCTAGGCTACTGGCA+AGG 0.666735 tig0043697:+3734 Msa1463860:CDS
CATGTAGCACTCAATAGCAG+AGG 0.671786 tig0043697:-4956 Msa1463860:intergenic
ATATATATCATCAATTACTG+AGG 0.671981 tig0043697:-4122 Msa1463860:intergenic
GGTCCAGGCATACTTTACTG+AGG 0.678982 tig0043697:+4602 Msa1463860:CDS
TGCTTGGAAGGATATCAATG+AGG 0.688978 tig0043697:+5038 Msa1463860:CDS
TGGTAGAAGGATAATGACCA+AGG 0.706697 tig0043697:+4087 Msa1463860:CDS
GAGTGCTACATGAATGAACA+TGG 0.715393 tig0043697:+4967 Msa1463860:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTAAAAAATCACATAATT+TGG - tig0043697:3292-3311 Msa1463860:intergenic 10.0%
!!! TGATTTTTTAAAATTATTAG+TGG + tig0043697:3299-3318 Msa1463860:intron 10.0%
!! ACAAAATTAAAATGATTAAA+TGG + tig0043697:3434-3453 Msa1463860:intron 10.0%
!!! AATATTGAACTATTTTTTTA+TGG + tig0043697:4228-4247 Msa1463860:intron 10.0%
!! TTTAATTCAAATTAATTAAG+AGG - tig0043697:4265-4284 Msa1463860:intergenic 10.0%
!!! TTAATTTGAATTAAAATTCT+AGG + tig0043697:4270-4289 Msa1463860:intron 10.0%
!!! AAATTTTACTCTTACTTTAA+TGG + tig0043697:2218-2237 Msa1463860:intron 15.0%
!!! AATTTTACTCTTACTTTAAT+GGG + tig0043697:2219-2238 Msa1463860:intron 15.0%
!! AATGCTATTAAAATTAAGTA+GGG - tig0043697:2705-2724 Msa1463860:intergenic 15.0%
!! AAATGCTATTAAAATTAAGT+AGG - tig0043697:2704-2723 Msa1463860:intergenic 15.0%
!!! AATTTTGCAATAATTTTTTG+CGG - tig0043697:2450-2469 Msa1463860:intergenic 15.0%
!! AGATAAAAAGTAATAAAATC+TGG - tig0043697:2485-2504 Msa1463860:intergenic 15.0%
!! TTCAAAAATTTAAGAGTTTA+AGG + tig0043697:2615-2634 Msa1463860:intron 15.0%
!! AAATGCTATTAAAATTAAGT+AGG + tig0043697:2704-2723 Msa1463860:intron 15.0%
!! AATGCTATTAAAATTAAGTA+GGG + tig0043697:2705-2724 Msa1463860:intron 15.0%
!!! TTTGTTTTCTTTAATGAATT+AGG + tig0043697:3957-3976 Msa1463860:intron 15.0%
!!! AAGAATTTTTACTTCATTTT+TGG - tig0043697:4423-4442 Msa1463860:intergenic 15.0%
!! TAGGTTATATATATTACCAT+AGG - tig0043697:2046-2065 Msa1463860:intergenic 20.0%
!!! AGTAAAATTTTGTGACAATT+GGG - tig0043697:2208-2227 Msa1463860:intergenic 20.0%
!! AAACAAATTTGAATTGAGTA+GGG - tig0043697:2355-2374 Msa1463860:intergenic 20.0%
!! TAAACAAATTTGAATTGAGT+AGG - tig0043697:2356-2375 Msa1463860:intergenic 20.0%
!! AAATTAATCATAGCTTAAAG+CGG + tig0043697:3698-3717 Msa1463860:CDS 20.0%
!! AAGCAAATTGAAATCTAATT+TGG - tig0043697:3818-3837 Msa1463860:intergenic 20.0%
!! ATATATATCATCAATTACTG+AGG - tig0043697:4125-4144 Msa1463860:intergenic 20.0%
!! GATGATATATATGATGTTTA+TGG + tig0043697:4133-4152 Msa1463860:CDS 20.0%
!! AATATTGAGATGTGAAAATT+TGG - tig0043697:4214-4233 Msa1463860:intergenic 20.0%
!! ATTTGAATTAAAATTCTAGG+TGG + tig0043697:4273-4292 Msa1463860:intron 20.0%
!! TTTGAATTAAAATTCTAGGT+GGG + tig0043697:4274-4293 Msa1463860:intron 20.0%
!!! CATATTCTTGTAAATTGTTT+TGG + tig0043697:4552-4571 Msa1463860:intron 20.0%
!!! CTATGAAGTTTTCAATTATT+GGG + tig0043697:5273-5292 Msa1463860:three_prime_UTR 20.0%
! CCAAGACATATTGAATAAAA+AGG - tig0043697:2021-2040 Msa1463860:intergenic 25.0%
!! CCTTTTTATTCAATATGTCT+TGG + tig0043697:2018-2037 Msa1463860:CDS 25.0%
!! GTAAAATTTTGTGACAATTG+GGG - tig0043697:2207-2226 Msa1463860:intergenic 25.0%
!! GAGTAAAATTTTGTGACAAT+TGG - tig0043697:2209-2228 Msa1463860:intergenic 25.0%
! AGTGCAGAAAAACAAAATTA+GGG - tig0043697:2322-2341 Msa1463860:intergenic 25.0%
!!! TAATTTTGTTTTTCTGCACT+GGG + tig0043697:2322-2341 Msa1463860:intron 25.0%
!!! TAATCAAACTTTGTTTTAGC+AGG + tig0043697:2643-2662 Msa1463860:intron 25.0%
!!! AATCAAACTTTGTTTTAGCA+GGG + tig0043697:2644-2663 Msa1463860:intron 25.0%
! CACAATAATCATGTTGAAAA+TGG + tig0043697:2971-2990 Msa1463860:CDS 25.0%
! AAATCTAATACAAGTAGACA+AGG - tig0043697:3090-3109 Msa1463860:intergenic 25.0%
! CTTAACCATATATTATCATG+TGG + tig0043697:3473-3492 Msa1463860:intron 25.0%
! TTAATTTCTGTAGCAAGAAA+AGG - tig0043697:3685-3704 Msa1463860:intergenic 25.0%
!! GTTTTCTTTAATGAATTAGG+TGG + tig0043697:3960-3979 Msa1463860:intron 25.0%
! TAGCAAAATTTCATGTATTG+TGG - tig0043697:4323-4342 Msa1463860:intergenic 25.0%
! TTCTTCATAAACATCCAAAA+CGG - tig0043697:4351-4370 Msa1463860:intergenic 25.0%
! TTTGGATGTTTATGAAGAAA+TGG + tig0043697:4352-4371 Msa1463860:CDS 25.0%
! ATTGATGTGCTTTATAAAGA+TGG + tig0043697:5126-5145 Msa1463860:CDS 25.0%
!! GCTATGAAGTTTTCAATTAT+TGG + tig0043697:5272-5291 Msa1463860:three_prime_UTR 25.0%
TTCAGTGTAATTACAAGTGT+CGG - tig0043697:2142-2161 Msa1463860:intergenic 30.0%
!! TACAAGGTCGCTATTTTATA+GGG - tig0043697:2736-2755 Msa1463860:intergenic 30.0%
!! TTACAAGGTCGCTATTTTAT+AGG - tig0043697:2735-2754 Msa1463860:intergenic 30.0%
CAGTGCAGAAAAACAAAATT+AGG - tig0043697:2323-2342 Msa1463860:intergenic 30.0%
!!! CTAATTTTGTTTTTCTGCAC+TGG + tig0043697:2321-2340 Msa1463860:intron 30.0%
CAAGATTAGAACACTATGAA+AGG - tig0043697:2581-2600 Msa1463860:intergenic 30.0%
!! TTACAAGGTCGCTATTTTAT+AGG + tig0043697:2735-2754 Msa1463860:intron 30.0%
!! TACAAGGTCGCTATTTTATA+GGG + tig0043697:2736-2755 Msa1463860:intron 30.0%
AATTCCTGCACATTAAAGTA+GGG - tig0043697:2779-2798 Msa1463860:intergenic 30.0%
AAATTCCTGCACATTAAAGT+AGG - tig0043697:2780-2799 Msa1463860:intergenic 30.0%
TAGTGCTAAAAGAAAAAGTG+AGG + tig0043697:2822-2841 Msa1463860:CDS 30.0%
! GGTTTGTGACATTTTTGTTA+GGG - tig0043697:2859-2878 Msa1463860:intergenic 30.0%
! ATTGATTCAATCCAACGTTT+GGG + tig0043697:2899-2918 Msa1463860:CDS 30.0%
ATTCAATTGCACTTGTCTTT+AGG + tig0043697:3020-3039 Msa1463860:CDS 30.0%
GTTAGTGTCTGTATCATATT+CGG + tig0043697:3331-3350 Msa1463860:intron 30.0%
TCAATATATGCTATGAAGCA+CGG - tig0043697:3372-3391 Msa1463860:intergenic 30.0%
TAGCATATATTGATCTCCAT+CGG + tig0043697:3379-3398 Msa1463860:intron 30.0%
GAGAACCACATGATAATATA+TGG - tig0043697:3481-3500 Msa1463860:intergenic 30.0%
AACTTCAAAGAAACACTTGT+TGG + tig0043697:3535-3554 Msa1463860:CDS 30.0%
AAACAACATCAGAAAGAAGT+TGG + tig0043697:3841-3860 Msa1463860:CDS 30.0%
TTCTTTAATGAATTAGGTGG+TGG + tig0043697:3963-3982 Msa1463860:intron 30.0%
! GAATAGTTGAAGCTTACTTT+TGG + tig0043697:4029-4048 Msa1463860:CDS 30.0%
!! TGAAGCTTACTTTTGGATAT+TGG + tig0043697:4036-4055 Msa1463860:CDS 30.0%
!! GAAGCTTACTTTTGGATATT+GGG + tig0043697:4037-4056 Msa1463860:CDS 30.0%
! TTTTCACTCAAGCAATTGAA+AGG + tig0043697:4176-4195 Msa1463860:CDS 30.0%
!! ATTTTGCTATAAAGCCGTTT+TGG + tig0043697:4334-4353 Msa1463860:CDS 30.0%
TGCACAATAGATGAAAAGAT+TGG + tig0043697:4581-4600 Msa1463860:intron 30.0%
!!! ATTGACAATTTTGGGGTTAT+TGG - tig0043697:4772-4791 Msa1463860:intergenic 30.0%
!!! ATGAAGCATTGACAATTTTG+GGG - tig0043697:4779-4798 Msa1463860:intergenic 30.0%
!!! GATGAAGCATTGACAATTTT+GGG - tig0043697:4780-4799 Msa1463860:intergenic 30.0%
!!! AGATGAAGCATTGACAATTT+TGG - tig0043697:4781-4800 Msa1463860:intergenic 30.0%
! ATCTAAAATTGCTAGACTCA+TGG + tig0043697:4797-4816 Msa1463860:CDS 30.0%
TCTTCTTATGCCTATTTCAA+TGG - tig0043697:5334-5353 Msa1463860:intergenic 30.0%
!! AGAAATCGGAGTTGGTATTA+GGG - tig0043697:1958-1977 Msa1285160:intergenic 35.0%
AAATTACCACCCCAACATTT+GGG + tig0043697:1991-2010 Msa1463860:CDS 35.0%
TCAATATGTCTTGGAACCTA+TGG + tig0043697:2027-2046 Msa1463860:CDS 35.0%
AAGTAGGGACTAAACTTACA+AGG - tig0043697:2720-2739 Msa1463860:intergenic 35.0%
AAGTAGGGACTAAACTTACA+AGG + tig0043697:2720-2739 Msa1463860:intron 35.0%
TTAACCCTACTTTAATGTGC+AGG + tig0043697:2772-2791 Msa1463860:intron 35.0%
! GGGTTTGTGACATTTTTGTT+AGG - tig0043697:2860-2879 Msa1463860:intergenic 35.0%
AAAATGTCACAAACCCTTTG+AGG + tig0043697:2864-2883 Msa1463860:CDS 35.0%
AAATGTCACAAACCCTTTGA+GGG + tig0043697:2865-2884 Msa1463860:CDS 35.0%
! TCAAATTAGCTTCCCTCAAA+GGG - tig0043697:2880-2899 Msa1463860:intergenic 35.0%
! ATCAAATTAGCTTCCCTCAA+AGG - tig0043697:2881-2900 Msa1463860:intergenic 35.0%
! GATTGATTCAATCCAACGTT+TGG + tig0043697:2898-2917 Msa1463860:CDS 35.0%
CAATGTCATGCTCAAAATGA+TGG - tig0043697:2931-2950 Msa1463860:intergenic 35.0%
! CATCATTTTGAGCATGACAT+TGG + tig0043697:2929-2948 Msa1463860:CDS 35.0%
AGACAAGTGCAATTGAATGA+AGG - tig0043697:3018-3037 Msa1463860:intergenic 35.0%
! CACTTGTCTTTAGGTTACTA+AGG + tig0043697:3029-3048 Msa1463860:CDS 35.0%
! TTTAGGTTACTAAGGCAACA+AGG + tig0043697:3037-3056 Msa1463860:CDS 35.0%
! ACAAGGATATCACATTTTGC+CGG + tig0043697:3054-3073 Msa1463860:CDS 35.0%
TAATACAAGTAGACAAGGTG+GGG - tig0043697:3085-3104 Msa1463860:intergenic 35.0%
CTAATACAAGTAGACAAGGT+GGG - tig0043697:3086-3105 Msa1463860:intergenic 35.0%
TCTAATACAAGTAGACAAGG+TGG - tig0043697:3087-3106 Msa1463860:intergenic 35.0%
! TACTCTTTTTAGATGTGTCC+TGG + tig0043697:3214-3233 Msa1463860:intron 35.0%
!! ATCTCCATCGGTTTAATAAG+AGG + tig0043697:3391-3410 Msa1463860:intron 35.0%
GAAACCTCTTATTAAACCGA+TGG - tig0043697:3398-3417 Msa1463860:intergenic 35.0%
AAGAAGTTCAAGAATGAGCA+AGG + tig0043697:3511-3530 Msa1463860:CDS 35.0%
ATTGAGTGGTCATCATTTCA+AGG - tig0043697:3657-3676 Msa1463860:intergenic 35.0%
AAGAAAAGGACTCAATTGAG+TGG - tig0043697:3671-3690 Msa1463860:intergenic 35.0%
GCATTACATTTCCACTTATG+AGG + tig0043697:3756-3775 Msa1463860:CDS 35.0%
! ATAGATGAAAAGATTGGTCC+AGG + tig0043697:4587-4606 Msa1463860:intron 35.0%
! ACCAACAATAGAAGAGTACA+TGG + tig0043697:4650-4669 Msa1463860:CDS 35.0%
GCTCTTGGAATAGTAAATTC+TGG + tig0043697:4672-4691 Msa1463860:CDS 35.0%
!! CTACAGAAGAGGTTTTTCAA+TGG + tig0043697:4742-4761 Msa1463860:CDS 35.0%
GGATGATATTGTTTCCAATG+AGG + tig0043697:4818-4837 Msa1463860:CDS 35.0%
TTTGTGCTTGATTACCTCAT+TGG - tig0043697:4835-4854 Msa1463860:intergenic 35.0%
! AATTAGTTTGAGCAAGAGAG+AGG + tig0043697:4925-4944 Msa1463860:intron 35.0%
! ATTAGTTTGAGCAAGAGAGA+GGG + tig0043697:4926-4945 Msa1463860:intron 35.0%
ACAAATTGAGAACTCGCATA+AGG - tig0043697:5098-5117 Msa1463860:intergenic 35.0%
GTCATTCTTTGTTGATCCTT+GGG - tig0043697:5169-5188 Msa1463860:intergenic 35.0%
TGTCATTCTTTGTTGATCCT+TGG - tig0043697:5170-5189 Msa1463860:intergenic 35.0%
TCCATGTCCAATATGAGTAA+AGG + tig0043697:5209-5228 Msa1463860:exon 35.0%
CCATGTCCAATATGAGTAAA+GGG + tig0043697:5210-5229 Msa1463860:exon 35.0%
CAAAGTCCCTTTACTCATAT+TGG - tig0043697:5219-5238 Msa1463860:intergenic 35.0%
GACAAACTAGCCATTGAAAT+AGG + tig0043697:5321-5340 Msa1463860:three_prime_UTR 35.0%
!! GAAATCGGAGTTGGTATTAG+GGG - tig0043697:1957-1976 Msa1285160:intergenic 40.0%
!! GAGAAATCGGAGTTGGTATT+AGG - tig0043697:1959-1978 Msa1285160:intergenic 40.0%
CAAATTACCACCCCAACATT+TGG + tig0043697:1990-2009 Msa1463860:CDS 40.0%
AATTACCACCCCAACATTTG+GGG + tig0043697:1992-2011 Msa1463860:CDS 40.0%
GATGGTATAATCCCAAACGT+TGG - tig0043697:2913-2932 Msa1463860:intergenic 40.0%
! CAAGGATATCACATTTTGCC+GGG + tig0043697:3055-3074 Msa1463860:CDS 40.0%
GAGTAGTGTTCGTGTTTCAT+AGG - tig0043697:3199-3218 Msa1463860:intergenic 40.0%
ATGAAGCACGGATACAAACA+TGG - tig0043697:3360-3379 Msa1463860:intergenic 40.0%
!! AACACTTGTTGGTGATGTTG+AGG + tig0043697:3546-3565 Msa1463860:CDS 40.0%
!! ACACTTGTTGGTGATGTTGA+GGG + tig0043697:3547-3566 Msa1463860:CDS 40.0%
TGTATGAAGCCACACATATG+AGG + tig0043697:3581-3600 Msa1463860:CDS 40.0%
TCCATGAATCCTCATATGTG+TGG - tig0043697:3593-3612 Msa1463860:intergenic 40.0%
ACATATGAGGATTCATGGAG+AGG + tig0043697:3594-3613 Msa1463860:CDS 40.0%
AGCAAAGTTGCATCATGAGA+GGG - tig0043697:3787-3806 Msa1463860:intergenic 40.0%
TAGCAAAGTTGCATCATGAG+AGG - tig0043697:3788-3807 Msa1463860:intergenic 40.0%
ACTATTCTGTTGCGAGCAAA+AGG - tig0043697:4016-4035 Msa1463860:intergenic 40.0%
TTTGAGCCTCAATACTCTGT+TGG + tig0043697:4067-4086 Msa1463860:CDS 40.0%
!! CTTCTACCAACAGAGTATTG+AGG - tig0043697:4076-4095 Msa1463860:intergenic 40.0%
! CTCAATACTCTGTTGGTAGA+AGG + tig0043697:4074-4093 Msa1463860:CDS 40.0%
TGGTAGAAGGATAATGACCA+AGG + tig0043697:4087-4106 Msa1463860:CDS 40.0%
AATGACCAAGGTGATATCCT+TGG + tig0043697:4099-4118 Msa1463860:CDS 40.0%
ATCATCAATTACTGAGGCCA+AGG - tig0043697:4119-4138 Msa1463860:intergenic 40.0%
TAGGTGGGATATAAGTTGCA+TGG + tig0043697:4289-4308 Msa1463860:intron 40.0%
TGAAGAAATGGAGCAAGAGA+TGG + tig0043697:4364-4383 Msa1463860:CDS 40.0%
CATACTTTACTGAGGCTCAA+TGG + tig0043697:4610-4629 Msa1463860:CDS 40.0%
GCCATGTACTCTTCTATTGT+TGG - tig0043697:4654-4673 Msa1463860:intergenic 40.0%
! ATAGAAGAGTACATGGCTCT+TGG + tig0043697:4657-4676 Msa1463860:CDS 40.0%
ATCACAACAACATCCTTCGT+TGG + tig0043697:4705-4724 Msa1463860:CDS 40.0%
AACAACATCCTTCGTTGGAA+TGG + tig0043697:4710-4729 Msa1463860:CDS 40.0%
ACAACATCCTTCGTTGGAAT+GGG + tig0043697:4711-4730 Msa1463860:CDS 40.0%
GAGTGCTACATGAATGAACA+TGG + tig0043697:4967-4986 Msa1463860:CDS 40.0%
CAAGACAAGTCACAAATGCT+TGG + tig0043697:5022-5041 Msa1463860:CDS 40.0%
ACAAGTCACAAATGCTTGGA+AGG + tig0043697:5026-5045 Msa1463860:CDS 40.0%
TGCTTGGAAGGATATCAATG+AGG + tig0043697:5038-5057 Msa1463860:CDS 40.0%
GATTGCTATACTAACTCCCA+AGG + tig0043697:5150-5169 Msa1463860:CDS 40.0%
CCCTTTACTCATATTGGACA+TGG - tig0043697:5213-5232 Msa1463860:intergenic 40.0%
ACGTCTAGAGAAATCGGAGT+TGG - tig0043697:1966-1985 Msa1285160:intergenic 45.0%
CTCCGATTTCTCTAGACGTT+CGG + tig0043697:1967-1986 Msa1463860:CDS 45.0%
TGCCGAACGTCTAGAGAAAT+CGG - tig0043697:1972-1991 Msa1463860:intergenic 45.0%
ATTACCACCCCAACATTTGG+GGG + tig0043697:1993-2012 Msa1463860:CDS 45.0%
AAAAGGTCCCCCCAAATGTT+GGG - tig0043697:2004-2023 Msa1463860:intergenic 45.0%
AAAAAGGTCCCCCCAAATGT+TGG - tig0043697:2005-2024 Msa1463860:intergenic 45.0%
TATGAAGCACAGACACTCCT+CGG + tig0043697:2064-2083 Msa1463860:intron 45.0%
GCCACACATATGAGGATTCA+TGG + tig0043697:3589-3608 Msa1463860:CDS 45.0%
GGTCATCATTTCAAGGTGTG+AGG - tig0043697:3650-3669 Msa1463860:intergenic 45.0%
CTAGGCAAGTTCTTGAAGAG+TGG - tig0043697:3724-3743 Msa1463860:intergenic 45.0%
CACTCTTCAAGAACTTGCCT+AGG + tig0043697:3722-3741 Msa1463860:CDS 45.0%
AGAGGGATCTTCCTCATAAG+TGG - tig0043697:3770-3789 Msa1463860:intergenic 45.0%
! GTGTCTGAAACGTCTCGAAT+AGG - tig0043697:3915-3934 Msa1463860:intergenic 45.0%
AATGGAGCAAGAGATGGTCA+AGG + tig0043697:4370-4389 Msa1463860:CDS 45.0%
AATGCATCCCATTCCAACGA+AGG - tig0043697:4721-4740 Msa1463860:intergenic 45.0%
CATGTAGCACTCAATAGCAG+AGG - tig0043697:4959-4978 Msa1463860:intergenic 45.0%
! AGAGGCTTTGGCACTTGAAT+TGG - tig0043697:5075-5094 Msa1463860:intergenic 45.0%
TTGAGAACTCGCATAAGGAG+AGG - tig0043697:5093-5112 Msa1463860:intergenic 45.0%
!!! TATAAGTAAATTTTTTTTAT+AGG + tig0043697:2675-2694 Msa1463860:intron 5.0%
!!! ATAAGTAAATTTTTTTTATA+GGG + tig0043697:2676-2695 Msa1463860:intron 5.0%
!! AATAAAAAAATAAAAAAACA+AGG - tig0043697:4459-4478 Msa1463860:intergenic 5.0%
!! AAAATATAAATTTAAAAGAT+AGG - tig0043697:4875-4894 Msa1463860:intergenic 5.0%
!! TCGGAGTTGGTATTAGGGGT+TGG - tig0043697:1953-1972 Msa1285160:intergenic 50.0%
TTACCACCCCAACATTTGGG+GGG + tig0043697:1994-2013 Msa1463860:CDS 50.0%
AAAGGTCCCCCCAAATGTTG+GGG - tig0043697:2003-2022 Msa1463860:intergenic 50.0%
!! GAGGAGTGTCTGTGCTTCAT+AGG - tig0043697:2065-2084 Msa1463860:intergenic 50.0%
!! TACAAGTGTCGGTGTCGTGT+TGG - tig0043697:2131-2150 Msa1463860:intergenic 50.0%
TAGACAAGGTGGGGTTTACC+CGG - tig0043697:3076-3095 Msa1463860:intergenic 50.0%
ATCATGTGTCAGAGTCGCGT+CGG - tig0043697:3265-3284 Msa1463860:intergenic 50.0%
CAAGAACTTGCCTAGGCTAC+TGG + tig0043697:3729-3748 Msa1463860:CDS 50.0%
TAATGCCTTGCCAGTAGCCT+AGG - tig0043697:3742-3761 Msa1463860:intergenic 50.0%
TGAGGCCAAGGATATCACCT+TGG - tig0043697:4107-4126 Msa1463860:intergenic 50.0%
GAGCAAGAGATGGTCAAGGA+AGG + tig0043697:4374-4393 Msa1463860:CDS 50.0%
GGTCCAGGCATACTTTACTG+AGG + tig0043697:4602-4621 Msa1463860:CDS 50.0%
GAGCCTCAGTAAAGTATGCC+TGG - tig0043697:4608-4627 Msa1463860:intergenic 50.0%
GGGATGCATTGCTACAGAAG+AGG + tig0043697:4731-4750 Msa1463860:CDS 50.0%
TTTGAGCAAGAGAGAGGGCA+TGG + tig0043697:4931-4950 Msa1463860:CDS 50.0%
ACTCGCATAAGGAGAGGCTT+TGG - tig0043697:5087-5106 Msa1463860:intergenic 50.0%
GCACAGACACTCCTCGGATT+AGG + tig0043697:2070-2089 Msa1463860:intron 55.0%
!! TGTCGGTGTCGTGTTGGTGT+CGG - tig0043697:2125-2144 Msa1463860:intergenic 55.0%
AACGACACGTGTTCGACACC+AGG - tig0043697:3235-3254 Msa1463860:intergenic 55.0%
ACTTGCCTAGGCTACTGGCA+AGG + tig0043697:3734-3753 Msa1463860:CDS 55.0%
! TCCTCGGATTAGGCGTGTCC+CGG + tig0043697:2080-2099 Msa1463860:intron 60.0%
GATTAGGCGTGTCCCGGTGT+CGG + tig0043697:2086-2105 Msa1463860:intron 60.0%
ACACGACACGTGTCCGACAC+CGG - tig0043697:2102-2121 Msa1463860:intergenic 60.0%
! TGTCAGAGTCGCGTCGGTGT+TGG - tig0043697:3259-3278 Msa1463860:intergenic 60.0%
GGTCCCCCCAAATGTTGGGG+TGG - tig0043697:2000-2019 Msa1463860:intergenic 65.0%
ACCGGGACACGCCTAATCCG+AGG - tig0043697:2084-2103 Msa1463860:intergenic 65.0%
CACGACACGTGTCCGACACC+GGG - tig0043697:2101-2120 Msa1463860:intergenic 65.0%
Chromosome Type Strat End Strand Name
tig0043697 gene 1917 5366 1917 ID=Msa1463860;Name=Msa1463860
tig0043697 mRNA 1917 5366 1917 ID=Msa1463860-mRNA-1;Parent=Msa1463860;Name=Msa1463860-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0.66|0.57|1|1|1|7|142|562
tig0043697 exon 1917 2048 1917 ID=Msa1463860-mRNA-1:exon:24215;Parent=Msa1463860-mRNA-1
tig0043697 exon 2794 3076 2794 ID=Msa1463860-mRNA-1:exon:24216;Parent=Msa1463860-mRNA-1
tig0043697 exon 3503 3875 3503 ID=Msa1463860-mRNA-1:exon:24217;Parent=Msa1463860-mRNA-1
tig0043697 exon 3979 4197 3979 ID=Msa1463860-mRNA-1:exon:24218;Parent=Msa1463860-mRNA-1
tig0043697 exon 4292 4430 4292 ID=Msa1463860-mRNA-1:exon:24219;Parent=Msa1463860-mRNA-1
tig0043697 exon 4591 4839 4591 ID=Msa1463860-mRNA-1:exon:24220;Parent=Msa1463860-mRNA-1
tig0043697 exon 4931 5366 4931 ID=Msa1463860-mRNA-1:exon:24221;Parent=Msa1463860-mRNA-1
tig0043697 CDS 1917 2048 1917 ID=Msa1463860-mRNA-1:cds;Parent=Msa1463860-mRNA-1
tig0043697 CDS 2794 3076 2794 ID=Msa1463860-mRNA-1:cds;Parent=Msa1463860-mRNA-1
tig0043697 CDS 3503 3875 3503 ID=Msa1463860-mRNA-1:cds;Parent=Msa1463860-mRNA-1
tig0043697 CDS 3979 4197 3979 ID=Msa1463860-mRNA-1:cds;Parent=Msa1463860-mRNA-1
tig0043697 CDS 4292 4430 4292 ID=Msa1463860-mRNA-1:cds;Parent=Msa1463860-mRNA-1
tig0043697 CDS 4591 4839 4591 ID=Msa1463860-mRNA-1:cds;Parent=Msa1463860-mRNA-1
tig0043697 CDS 4931 5224 4931 ID=Msa1463860-mRNA-1:cds;Parent=Msa1463860-mRNA-1
tig0043697 three_prime_UTR 5225 5366 5225 ID=Msa1463860-mRNA-1:three_prime_utr;Parent=Msa1463860-mRNA-1
Gene Sequence

>Msa1463860

ATGTCGGTTTCAGTAACATCATCACTAGTTGCTCCAACCCCTAATACCAACTCCGATTTCTCTAGACGTTCGGCAAATTACCACCCCAACATTTGGGGGGACCTTTTTATTCAATATGTCTTGGAACCTATGGAATTTGATGAAATAATGAAGCAGATTATAGTGCTAAAAGAAAAAGTGAGGCAGATGCTAGTCCCTAACAAAAATGTCACAAACCCTTTGAGGGAAGCTAATTTGATTGATTCAATCCAACGTTTGGGATTATACCATCATTTTGAGCATGACATTGGAGAATTATTGCGACATATTCACAATAATCATGTTGAAAATGGAACAATAACTCTTAACGAAGACCTTCATTCAATTGCACTTGTCTTTAGGTTACTAAGGCAACAAGGATATCACATTTTGCCGGATGCTTTTAAGAAGTTCAAGAATGAGCAAGGAAACTTCAAAGAAACACTTGTTGGTGATGTTGAGGGAATGCTAAGTTTGTATGAAGCCACACATATGAGGATTCATGGAGAGGATATATTAGATGAAGCACTTTCTTTCACTTCCTCACACCTTGAAATGATGACCACTCAATTGAGTCCTTTTCTTGCTACAGAAATTAATCATAGCTTAAAGCGGCCACTCTTCAAGAACTTGCCTAGGCTACTGGCAAGGCATTACATTTCCACTTATGAGGAAGATCCCTCTCATGATGCAACTTTGCTATTACTTGCCAAATTAGATTTCAATTTGCTTCAAAAACAACATCAGAAAGAAGTTGGCGATATTTCAAAGTGGTGGAAAGATTTAGATTTTGCAACAAAACTACCTTTTGCTCGCAACAGAATAGTTGAAGCTTACTTTTGGATATTGGGAGTGTATTTTGAGCCTCAATACTCTGTTGGTAGAAGGATAATGACCAAGGTGATATCCTTGGCCTCAGTAATTGATGATATATATGATGTTTATGGTACAATAGAAGAGCTACAACTTTTCACTCAAGCAATTGAAAGGTGGGATATAAGTTGCATGGATTTTCTACCACAATACATGAAATTTTGCTATAAAGCCGTTTTGGATGTTTATGAAGAAATGGAGCAAGAGATGGTCAAGGAAGGCAGAGCATTTTGTGTAACATATGCCAAAAATGAAATGAAAAGATTGGTCCAGGCATACTTTACTGAGGCTCAATGGTTCAGTAGAAAATATATACCAACAATAGAAGAGTACATGGCTCTTGGAATAGTAAATTCTGGTTACTATCTAATCACAACAACATCCTTCGTTGGAATGGGATGCATTGCTACAGAAGAGGTTTTTCAATGGTTAACCAATAACCCCAAAATTGTCAATGCTTCATCTAAAATTGCTAGACTCATGGATGATATTGTTTCCAATGAGTTTGAGCAAGAGAGAGGGCATGGTGCCTCTGCTATTGAGTGCTACATGAATGAACATGGTGTGTCTAGAGAAGATGCAGTTAATGAACTTTCAAGACAAGTCACAAATGCTTGGAAGGATATCAATGAGGAACTTCTTGATCCAATTCAAGTGCCAAAGCCTCTCCTTATGCGAGTTCTCAATTTGTCACGTGTCATTGATGTGCTTTATAAAGATGGAGATTGCTATACTAACTCCCAAGGATCAACAAAGAATGACATAATATCTATCTTGTTGAATCCATGTCCAATATGA

Protein sequence

>Msa1463860

MSVSVTSSLVAPTPNTNSDFSRRSANYHPNIWGDLFIQYVLEPMEFDEIMKQIIVLKEKVRQMLVPNKNVTNPLREANLIDSIQRLGLYHHFEHDIGELLRHIHNNHVENGTITLNEDLHSIALVFRLLRQQGYHILPDAFKKFKNEQGNFKETLVGDVEGMLSLYEATHMRIHGEDILDEALSFTSSHLEMMTTQLSPFLATEINHSLKRPLFKNLPRLLARHYISTYEEDPSHDATLLLLAKLDFNLLQKQHQKEVGDISKWWKDLDFATKLPFARNRIVEAYFWILGVYFEPQYSVGRRIMTKVISLASVIDDIYDVYGTIEELQLFTQAIERWDISCMDFLPQYMKFCYKAVLDVYEEMEQEMVKEGRAFCVTYAKNEMKRLVQAYFTEAQWFSRKYIPTIEEYMALGIVNSGYYLITTTSFVGMGCIATEEVFQWLTNNPKIVNASSKIARLMDDIVSNEFEQERGHGASAIECYMNEHGVSREDAVNELSRQVTNAWKDINEELLDPIQVPKPLLMRVLNLSRVIDVLYKDGDCYTNSQGSTKNDIISILLNPCPI*