Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1463860 | XP_013456729.1 | 94.840 | 562 | 29 | 0 | 1 | 562 | 1 | 562 | 0.0 | 1122 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1463860 | sp|Q6Q3H3|TPSGD_VITVI | 56.306 | 563 | 239 | 3 | 1 | 562 | 1 | 557 | 0.0 | 665 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1463860 | Q5UBY0 | 94.840 | 562 | 29 | 0 | 1 | 562 | 1 | 562 | 0.0 | 1122 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0032930 | Msa1463860 | 0.808076 | 3.698365e-50 | -8.615850e-47 |
Msa1421520 | Msa1463860 | 0.809963 | 1.458840e-50 | -8.615850e-47 |
Msa1432730 | Msa1463860 | 0.803100 | 4.094839e-49 | -8.615850e-47 |
Msa0609470 | Msa1463860 | 0.958899 | 7.481728e-117 | -8.615850e-47 |
Msa0650120 | Msa1463860 | 0.938896 | 3.146445e-99 | -8.615850e-47 |
Msa1273620 | Msa1463860 | 0.827671 | 1.375392e-54 | -8.615850e-47 |
Msa1311600 | Msa1463860 | 0.805809 | 1.115535e-49 | -8.615850e-47 |
Msa1311630 | Msa1463860 | 0.832889 | 7.306292e-56 | -8.615850e-47 |
Msa0389080 | Msa1463860 | 0.827546 | 1.473506e-54 | -8.615850e-47 |
Msa0389120 | Msa1463860 | 0.841449 | 4.719088e-58 | -8.615850e-47 |
Msa0414510 | Msa1463860 | 0.802995 | 4.305118e-49 | -8.615850e-47 |
Msa1078280 | Msa1463860 | 0.804106 | 2.533055e-49 | -8.615850e-47 |
Msa1123490 | Msa1463860 | 0.811277 | 7.588910e-51 | -8.615850e-47 |
Msa1171640 | Msa1463860 | 0.801375 | 9.275562e-49 | -8.615850e-47 |
Msa1181370 | Msa1463860 | 0.817328 | 3.490896e-52 | -8.615850e-47 |
Msa0555890 | Msa1463860 | 0.980519 | 2.086989e-150 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1463860 | MtrunA17_Chr4g0042111 | 94.840 | 562 | 29 | 0 | 1 | 562 | 1 | 562 | 0.0 | 1122 |
Msa1463860 | MtrunA17_Chr7g0236991 | 56.273 | 542 | 234 | 2 | 22 | 562 | 14 | 553 | 0.0 | 652 |
Msa1463860 | MtrunA17_Chr7g0237001 | 56.273 | 542 | 234 | 2 | 22 | 562 | 14 | 553 | 0.0 | 651 |
Msa1463860 | MtrunA17_Chr7g0237041 | 56.273 | 542 | 234 | 2 | 22 | 562 | 14 | 553 | 0.0 | 651 |
Msa1463860 | MtrunA17_Chr7g0237081 | 56.273 | 542 | 234 | 2 | 22 | 562 | 14 | 553 | 0.0 | 651 |
Msa1463860 | MtrunA17_Chr7g0237051 | 56.273 | 542 | 234 | 2 | 22 | 562 | 14 | 553 | 0.0 | 651 |
Msa1463860 | MtrunA17_Chr3g0105071 | 55.914 | 558 | 242 | 3 | 7 | 562 | 2 | 557 | 0.0 | 647 |
Msa1463860 | MtrunA17_Chr5g0425371 | 55.556 | 549 | 240 | 3 | 16 | 562 | 7 | 553 | 0.0 | 647 |
Msa1463860 | MtrunA17_Chr4g0024691 | 56.727 | 550 | 235 | 2 | 14 | 562 | 14 | 561 | 0.0 | 645 |
Msa1463860 | MtrunA17_Chr6g0451711 | 54.281 | 549 | 249 | 2 | 15 | 562 | 10 | 557 | 0.0 | 639 |
Msa1463860 | MtrunA17_Chr5g0431571 | 55.941 | 547 | 237 | 3 | 18 | 562 | 5 | 549 | 0.0 | 639 |
Msa1463860 | MtrunA17_Chr3g0082691 | 54.595 | 555 | 248 | 3 | 10 | 562 | 1 | 553 | 0.0 | 637 |
Msa1463860 | MtrunA17_Chr6g0465911 | 54.399 | 557 | 248 | 3 | 7 | 562 | 2 | 553 | 0.0 | 635 |
Msa1463860 | MtrunA17_Chr6g0466051 | 54.219 | 557 | 249 | 3 | 7 | 562 | 2 | 553 | 0.0 | 634 |
Msa1463860 | MtrunA17_Chr5g0431651 | 54.098 | 549 | 249 | 3 | 16 | 562 | 5 | 552 | 0.0 | 628 |
Msa1463860 | MtrunA17_Chr6g0465441 | 52.727 | 550 | 256 | 3 | 15 | 562 | 6 | 553 | 0.0 | 624 |
Msa1463860 | MtrunA17_Chr7g0236961 | 57.551 | 490 | 208 | 0 | 73 | 562 | 9 | 498 | 0.0 | 611 |
Msa1463860 | MtrunA17_Chr7g0237011 | 57.551 | 490 | 208 | 0 | 73 | 562 | 9 | 498 | 0.0 | 610 |
Msa1463860 | MtrunA17_Chr6g0465851 | 54.808 | 520 | 232 | 2 | 44 | 562 | 1 | 518 | 0.0 | 602 |
Msa1463860 | MtrunA17_Chr2g0319041 | 45.730 | 562 | 291 | 10 | 8 | 562 | 3 | 557 | 3.04e-176 | 509 |
Msa1463860 | MtrunA17_Chr7g0236971 | 57.357 | 401 | 171 | 0 | 162 | 562 | 1 | 401 | 2.35e-174 | 498 |
Msa1463860 | MtrunA17_Chr8g0336181 | 46.558 | 552 | 284 | 8 | 18 | 562 | 9 | 556 | 1.02e-172 | 500 |
Msa1463860 | MtrunA17_Chr2g0319051 | 45.946 | 518 | 272 | 7 | 49 | 562 | 1 | 514 | 3.57e-165 | 479 |
Msa1463860 | MtrunA17_Chr6g0465981 | 56.878 | 378 | 157 | 3 | 7 | 383 | 2 | 374 | 5.45e-154 | 446 |
Msa1463860 | MtrunA17_Chr6g0465871 | 56.878 | 378 | 157 | 3 | 7 | 383 | 2 | 374 | 5.45e-154 | 446 |
Msa1463860 | MtrunA17_Chr6g0466081 | 56.878 | 378 | 157 | 3 | 7 | 383 | 2 | 374 | 5.45e-154 | 446 |
Msa1463860 | MtrunA17_Chr6g0466111 | 57.771 | 341 | 141 | 2 | 44 | 383 | 1 | 339 | 4.07e-141 | 411 |
Msa1463860 | MtrunA17_Chr7g0236951 | 60.125 | 321 | 126 | 1 | 63 | 383 | 1 | 319 | 7.29e-141 | 410 |
Msa1463860 | MtrunA17_Chr7g0237031 | 60.125 | 321 | 126 | 1 | 63 | 383 | 1 | 319 | 1.14e-140 | 409 |
Msa1463860 | MtrunA17_Chr6g0465931 | 57.478 | 341 | 142 | 2 | 44 | 383 | 1 | 339 | 5.71e-140 | 409 |
Msa1463860 | MtrunA17_Chr4g0008621 | 46.778 | 419 | 211 | 6 | 8 | 416 | 2 | 418 | 8.55e-135 | 399 |
Msa1463860 | MtrunA17_Chr4g0023911 | 37.906 | 554 | 337 | 5 | 7 | 559 | 31 | 578 | 1.23e-124 | 378 |
Msa1463860 | MtrunA17_Chr2g0310331 | 38.321 | 548 | 323 | 9 | 18 | 561 | 49 | 585 | 1.11e-116 | 358 |
Msa1463860 | MtrunA17_Chr2g0319071 | 38.791 | 513 | 262 | 10 | 51 | 559 | 22 | 486 | 1.57e-114 | 349 |
Msa1463860 | MtrunA17_Chr8g0357411 | 36.182 | 550 | 341 | 5 | 15 | 562 | 48 | 589 | 7.56e-112 | 345 |
Msa1463860 | MtrunA17_Chr2g0323131 | 36.454 | 502 | 304 | 6 | 41 | 539 | 55 | 544 | 6.25e-109 | 337 |
Msa1463860 | MtrunA17_Chr2g0323151 | 37.931 | 464 | 275 | 5 | 79 | 539 | 6 | 459 | 6.32e-105 | 324 |
Msa1463860 | MtrunA17_Chr5g0445511 | 61.233 | 227 | 88 | 0 | 158 | 384 | 2 | 228 | 3.64e-101 | 305 |
Msa1463860 | MtrunA17_Chr6g0466031 | 50.000 | 260 | 130 | 0 | 303 | 562 | 1 | 260 | 6.06e-91 | 280 |
Msa1463860 | MtrunA17_Chr4g0048911 | 34.151 | 489 | 308 | 9 | 58 | 539 | 60 | 541 | 1.81e-89 | 286 |
Msa1463860 | MtrunA17_Chr2g0310401 | 37.150 | 428 | 266 | 2 | 136 | 561 | 5 | 431 | 2.87e-89 | 281 |
Msa1463860 | MtrunA17_Chr4g0048921 | 35.579 | 475 | 299 | 4 | 72 | 542 | 82 | 553 | 9.41e-89 | 285 |
Msa1463860 | MtrunA17_Chr7g0237061 | 48.846 | 260 | 110 | 2 | 303 | 562 | 1 | 237 | 3.65e-82 | 256 |
Msa1463860 | MtrunA17_Chr7g0237071 | 60.309 | 194 | 77 | 0 | 73 | 266 | 9 | 202 | 1.62e-77 | 244 |
Msa1463860 | MtrunA17_Chr2g0280581 | 29.480 | 519 | 350 | 9 | 50 | 558 | 6 | 518 | 3.98e-77 | 253 |
Msa1463860 | MtrunA17_Chr2g0319081 | 38.393 | 336 | 187 | 8 | 230 | 562 | 109 | 427 | 2.52e-73 | 240 |
Msa1463860 | MtrunA17_Chr2g0319081 | 40.580 | 138 | 77 | 4 | 1 | 136 | 1 | 135 | 2.38e-21 | 97.1 |
Msa1463860 | MtrunA17_Chr3g0108941 | 29.435 | 496 | 333 | 8 | 50 | 535 | 6 | 494 | 8.59e-73 | 241 |
Msa1463860 | MtrunA17_Chr3g0108981 | 30.407 | 467 | 312 | 7 | 79 | 535 | 6 | 469 | 2.45e-72 | 239 |
Msa1463860 | MtrunA17_Chr3g0108961 | 30.407 | 467 | 312 | 7 | 79 | 535 | 6 | 469 | 2.45e-72 | 239 |
Msa1463860 | MtrunA17_Chr3g0109001 | 30.040 | 496 | 330 | 9 | 50 | 535 | 6 | 494 | 6.11e-72 | 239 |
Msa1463860 | MtrunA17_Chr3g0105691 | 29.651 | 516 | 341 | 11 | 50 | 552 | 39 | 545 | 5.20e-71 | 237 |
Msa1463860 | MtrunA17_Chr3g0109021 | 29.659 | 499 | 327 | 11 | 50 | 535 | 6 | 493 | 6.18e-70 | 234 |
Msa1463860 | MtrunA17_Chr3g0109031 | 29.234 | 496 | 333 | 10 | 50 | 535 | 6 | 493 | 2.10e-69 | 232 |
Msa1463860 | MtrunA17_Chr3g0109011 | 30.043 | 466 | 314 | 7 | 79 | 535 | 6 | 468 | 4.32e-69 | 231 |
Msa1463860 | MtrunA17_Chr3g0099031 | 30.382 | 497 | 326 | 11 | 50 | 535 | 6 | 493 | 6.64e-69 | 231 |
Msa1463860 | MtrunA17_Chr3g0108991 | 29.234 | 496 | 333 | 10 | 50 | 535 | 6 | 493 | 3.32e-68 | 229 |
Msa1463860 | MtrunA17_Chr3g0108951 | 29.234 | 496 | 333 | 10 | 50 | 535 | 6 | 493 | 3.32e-68 | 229 |
Msa1463860 | MtrunA17_Chr6g0466021 | 53.171 | 205 | 90 | 3 | 7 | 210 | 2 | 201 | 7.95e-68 | 218 |
Msa1463860 | MtrunA17_Chr3g0108971 | 30.407 | 467 | 311 | 9 | 79 | 535 | 6 | 468 | 2.31e-67 | 226 |
Msa1463860 | MtrunA17_Chr6g0477111 | 29.072 | 485 | 330 | 7 | 79 | 552 | 6 | 487 | 7.20e-67 | 225 |
Msa1463860 | MtrunA17_Chr7g0237021 | 51.163 | 172 | 84 | 0 | 391 | 562 | 1 | 172 | 4.15e-59 | 194 |
Msa1463860 | MtrunA17_Chr7g0236941 | 51.163 | 172 | 84 | 0 | 391 | 562 | 1 | 172 | 4.15e-59 | 194 |
Msa1463860 | MtrunA17_Chr6g0477121 | 29.529 | 403 | 277 | 5 | 139 | 535 | 10 | 411 | 4.55e-58 | 199 |
Msa1463860 | MtrunA17_Chr5g0445501 | 49.419 | 172 | 87 | 0 | 391 | 562 | 1 | 172 | 8.19e-58 | 191 |
Msa1463860 | MtrunA17_Chr7g0217361 | 36.000 | 300 | 191 | 1 | 261 | 559 | 8 | 307 | 1.54e-56 | 192 |
Msa1463860 | MtrunA17_Chr6g0465881 | 48.256 | 172 | 89 | 0 | 391 | 562 | 1 | 172 | 1.01e-54 | 182 |
Msa1463860 | MtrunA17_Chr6g0465941 | 48.256 | 172 | 89 | 0 | 391 | 562 | 1 | 172 | 1.17e-54 | 182 |
Msa1463860 | MtrunA17_Chr6g0466121 | 48.256 | 172 | 89 | 0 | 391 | 562 | 1 | 172 | 1.17e-54 | 182 |
Msa1463860 | MtrunA17_Chr6g0465991 | 48.256 | 172 | 89 | 0 | 391 | 562 | 1 | 172 | 1.17e-54 | 182 |
Msa1463860 | MtrunA17_Chr6g0466091 | 48.256 | 172 | 89 | 0 | 391 | 562 | 1 | 172 | 1.17e-54 | 182 |
Msa1463860 | MtrunA17_Chr8g0357231 | 34.363 | 259 | 168 | 2 | 304 | 561 | 1 | 258 | 1.28e-46 | 164 |
Msa1463860 | MtrunA17_Chr7g0236921 | 48.101 | 158 | 78 | 1 | 409 | 562 | 1 | 158 | 5.65e-46 | 159 |
Msa1463860 | MtrunA17_Chr8g0357221 | 38.400 | 250 | 146 | 3 | 15 | 263 | 48 | 290 | 1.76e-43 | 156 |
Msa1463860 | MtrunA17_Chr7g0236931 | 46.104 | 154 | 80 | 1 | 409 | 562 | 1 | 151 | 3.66e-42 | 148 |
Msa1463860 | MtrunA17_Chr7g0233861 | 52.308 | 130 | 53 | 1 | 207 | 336 | 38 | 158 | 1.58e-41 | 147 |
Msa1463860 | MtrunA17_Chr2g0310121 | 28.150 | 508 | 322 | 17 | 79 | 553 | 278 | 775 | 9.90e-39 | 151 |
Msa1463860 | MtrunA17_Chr3g0101681 | 28.544 | 522 | 314 | 20 | 79 | 558 | 279 | 783 | 2.56e-37 | 147 |
Msa1463860 | MtrunA17_Chr7g0236981 | 48.760 | 121 | 59 | 2 | 22 | 141 | 14 | 132 | 2.32e-33 | 124 |
Msa1463860 | MtrunA17_Chr5g0445401 | 59.140 | 93 | 36 | 2 | 173 | 263 | 2 | 94 | 7.22e-28 | 107 |
Msa1463860 | MtrunA17_Chr7g0218001 | 28.617 | 311 | 177 | 8 | 65 | 348 | 335 | 627 | 6.78e-23 | 103 |
Msa1463860 | MtrunA17_Chr5g0445521 | 48.980 | 98 | 47 | 2 | 7 | 103 | 2 | 97 | 1.62e-22 | 92.4 |
Msa1463860 | MtrunA17_Chr3g0082711 | 40.517 | 116 | 52 | 1 | 447 | 562 | 1 | 99 | 3.27e-22 | 91.7 |
Msa1463860 | MtrunA17_Chr7g0217351 | 30.412 | 194 | 129 | 3 | 74 | 264 | 83 | 273 | 1.60e-21 | 95.1 |
Msa1463860 | MtrunA17_Chr7g0259881 | 26.241 | 282 | 180 | 7 | 65 | 319 | 218 | 498 | 1.77e-21 | 98.6 |
Msa1463860 | MtrunA17_Chr2g0281651 | 24.825 | 286 | 204 | 7 | 239 | 519 | 43 | 322 | 3.74e-17 | 84.0 |
Msa1463860 | MtrunA17_Chr2g0310411 | 41.379 | 116 | 59 | 5 | 21 | 136 | 57 | 163 | 1.03e-16 | 78.2 |
Msa1463860 | MtrunA17_Chr7g0218041 | 30.705 | 241 | 142 | 6 | 124 | 340 | 1 | 240 | 4.39e-14 | 74.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1463860 | AT5G23960.2 | 42.701 | 548 | 308 | 4 | 17 | 562 | 2 | 545 | 1.33e-156 | 459 |
Msa1463860 | AT5G23960.1 | 42.727 | 550 | 307 | 5 | 17 | 562 | 2 | 547 | 2.81e-155 | 456 |
Msa1463860 | AT3G14490.1 | 40.143 | 558 | 323 | 6 | 11 | 562 | 49 | 601 | 1.04e-140 | 420 |
Msa1463860 | AT1G70080.1 | 37.590 | 556 | 337 | 7 | 11 | 558 | 54 | 607 | 8.92e-130 | 392 |
Msa1463860 | AT3G14540.1 | 36.563 | 547 | 338 | 4 | 21 | 562 | 59 | 601 | 4.10e-127 | 385 |
Msa1463860 | AT3G14520.1 | 36.197 | 547 | 340 | 4 | 21 | 562 | 62 | 604 | 4.34e-127 | 385 |
Msa1463860 | AT1G31950.1 | 35.846 | 544 | 340 | 4 | 24 | 562 | 67 | 606 | 1.64e-125 | 381 |
Msa1463860 | AT1G31950.3 | 35.780 | 545 | 340 | 5 | 24 | 562 | 67 | 607 | 2.98e-124 | 378 |
Msa1463860 | AT3G32030.1 | 37.011 | 562 | 338 | 8 | 11 | 562 | 49 | 604 | 4.49e-123 | 375 |
Msa1463860 | AT5G44630.1 | 37.640 | 534 | 325 | 6 | 32 | 559 | 23 | 554 | 1.81e-119 | 364 |
Msa1463860 | AT1G33750.1 | 34.813 | 563 | 360 | 4 | 2 | 562 | 46 | 603 | 8.38e-119 | 364 |
Msa1463860 | AT3G29410.1 | 35.531 | 546 | 343 | 6 | 21 | 562 | 63 | 603 | 2.20e-118 | 363 |
Msa1463860 | AT3G29410.2 | 35.259 | 502 | 318 | 4 | 63 | 562 | 2 | 498 | 8.29e-111 | 340 |
Msa1463860 | AT4G20200.1 | 36.015 | 522 | 328 | 4 | 45 | 562 | 85 | 604 | 4.60e-108 | 336 |
Msa1463860 | AT4G15870.1 | 33.993 | 556 | 345 | 8 | 10 | 558 | 54 | 594 | 1.45e-107 | 335 |
Msa1463860 | AT4G16730.1 | 33.270 | 529 | 331 | 7 | 48 | 562 | 19 | 539 | 3.53e-107 | 332 |
Msa1463860 | AT4G20210.1 | 31.915 | 564 | 374 | 5 | 3 | 562 | 43 | 600 | 2.78e-106 | 332 |
Msa1463860 | AT4G13300.1 | 35.382 | 537 | 331 | 6 | 32 | 559 | 22 | 551 | 7.64e-105 | 326 |
Msa1463860 | AT4G16730.2 | 33.333 | 495 | 317 | 4 | 79 | 562 | 1 | 493 | 1.65e-104 | 323 |
Msa1463860 | AT3G14540.2 | 36.865 | 453 | 278 | 3 | 21 | 469 | 59 | 507 | 1.25e-102 | 319 |
Msa1463860 | AT4G20230.2 | 34.023 | 532 | 344 | 6 | 32 | 558 | 84 | 613 | 8.77e-102 | 320 |
Msa1463860 | AT4G20230.1 | 34.023 | 532 | 344 | 6 | 32 | 558 | 72 | 601 | 1.01e-101 | 320 |
Msa1463860 | AT3G29190.1 | 33.581 | 539 | 344 | 6 | 32 | 562 | 69 | 601 | 1.29e-101 | 319 |
Msa1463860 | AT4G13280.2 | 35.460 | 533 | 336 | 6 | 32 | 559 | 22 | 551 | 1.50e-101 | 318 |
Msa1463860 | AT2G23230.2 | 34.307 | 548 | 351 | 8 | 6 | 546 | 39 | 584 | 5.44e-101 | 318 |
Msa1463860 | AT2G23230.1 | 34.124 | 548 | 347 | 9 | 6 | 546 | 39 | 579 | 7.34e-99 | 312 |
Msa1463860 | AT1G48800.1 | 33.092 | 553 | 361 | 6 | 12 | 558 | 53 | 602 | 1.05e-98 | 312 |
Msa1463860 | AT1G31950.2 | 36.018 | 447 | 277 | 4 | 24 | 465 | 67 | 509 | 1.27e-98 | 309 |
Msa1463860 | AT1G66020.1 | 33.710 | 531 | 346 | 4 | 32 | 558 | 66 | 594 | 5.14e-97 | 307 |
Msa1463860 | AT4G16740.1 | 32.671 | 554 | 347 | 11 | 21 | 562 | 25 | 564 | 3.01e-96 | 304 |
Msa1463860 | AT3G25820.1 | 31.325 | 581 | 361 | 12 | 5 | 562 | 29 | 594 | 4.13e-96 | 305 |
Msa1463860 | AT3G25830.1 | 31.325 | 581 | 361 | 12 | 5 | 562 | 29 | 594 | 4.13e-96 | 305 |
Msa1463860 | AT3G29110.1 | 32.772 | 534 | 353 | 5 | 29 | 558 | 62 | 593 | 1.31e-95 | 303 |
Msa1463860 | AT2G24210.1 | 32.635 | 573 | 345 | 13 | 13 | 562 | 36 | 590 | 1.74e-95 | 303 |
Msa1463860 | AT1G61680.1 | 33.811 | 488 | 309 | 6 | 58 | 539 | 77 | 556 | 2.26e-93 | 297 |
Msa1463860 | AT1G61680.2 | 33.607 | 488 | 303 | 7 | 58 | 539 | 77 | 549 | 2.24e-91 | 291 |
Msa1463860 | AT3G25810.1 | 32.095 | 592 | 345 | 16 | 5 | 562 | 29 | 597 | 3.05e-90 | 290 |
Msa1463860 | AT4G13280.1 | 33.959 | 533 | 314 | 7 | 32 | 559 | 22 | 521 | 5.98e-90 | 286 |
Msa1463860 | AT1G48820.1 | 32.240 | 549 | 311 | 11 | 21 | 558 | 62 | 560 | 4.89e-81 | 265 |
Msa1463860 | AT5G48110.1 | 38.484 | 343 | 206 | 5 | 221 | 562 | 1 | 339 | 1.63e-78 | 251 |
Msa1463860 | AT3G25820.2 | 33.741 | 409 | 246 | 7 | 5 | 399 | 29 | 426 | 1.12e-71 | 236 |
Msa1463860 | AT4G16740.2 | 35.544 | 377 | 224 | 7 | 21 | 387 | 25 | 392 | 5.61e-70 | 231 |
Msa1463860 | AT1G66020.2 | 36.103 | 349 | 217 | 4 | 32 | 376 | 66 | 412 | 1.21e-67 | 225 |
Msa1463860 | AT3G25820.4 | 35.838 | 346 | 197 | 7 | 5 | 336 | 29 | 363 | 1.43e-61 | 208 |
Msa1463860 | AT3G25820.3 | 35.838 | 346 | 197 | 7 | 5 | 336 | 29 | 363 | 1.43e-61 | 208 |
Msa1463860 | AT4G16740.4 | 37.730 | 326 | 184 | 7 | 21 | 336 | 25 | 341 | 4.85e-61 | 206 |
Msa1463860 | AT4G16740.3 | 37.730 | 326 | 184 | 7 | 21 | 336 | 25 | 341 | 4.85e-61 | 206 |
Msa1463860 | AT1G79460.1 | 24.606 | 508 | 340 | 16 | 78 | 556 | 276 | 769 | 1.69e-29 | 124 |
Msa1463860 | AT1G61120.1 | 22.649 | 521 | 365 | 14 | 65 | 559 | 273 | 781 | 8.34e-26 | 112 |
Msa1463860 | AT4G02780.1 | 30.824 | 279 | 161 | 8 | 65 | 314 | 320 | 595 | 2.68e-24 | 108 |
Find 109 sgRNAs with CRISPR-Local
Find 209 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAGCAAATTGAAATCTAATT+TGG | 0.157846 | tig0043697:-3815 | Msa1463860:intergenic |
AGATGAAGCATTGACAATTT+TGG | 0.158357 | tig0043697:-4778 | Msa1463860:intergenic |
GATGATATATATGATGTTTA+TGG | 0.206526 | tig0043697:+4133 | Msa1463860:CDS |
CACAATAATCATGTTGAAAA+TGG | 0.211729 | tig0043697:+2971 | Msa1463860:CDS |
GAGAAATCGGAGTTGGTATT+AGG | 0.224064 | tig0043697:-1956 | Msa1463860:intergenic |
ATTCAATTGCACTTGTCTTT+AGG | 0.255161 | tig0043697:+3020 | Msa1463860:CDS |
CAAAGTCCCTTTACTCATAT+TGG | 0.261866 | tig0043697:-5216 | Msa1463860:intergenic |
CAAATTACCACCCCAACATT+TGG | 0.286981 | tig0043697:+1990 | Msa1463860:CDS |
AAATTACCACCCCAACATTT+GGG | 0.288674 | tig0043697:+1991 | Msa1463860:CDS |
CCAAGACATATTGAATAAAA+AGG | 0.295172 | tig0043697:-2018 | Msa1463860:intergenic |
GTCATTCTTTGTTGATCCTT+GGG | 0.305154 | tig0043697:-5166 | Msa1463860:intergenic |
AGAGGCTTTGGCACTTGAAT+TGG | 0.307687 | tig0043697:-5072 | Msa1463860:intergenic |
GATTGATTCAATCCAACGTT+TGG | 0.313958 | tig0043697:+2898 | Msa1463860:CDS |
GACAAACTAGCCATTGAAAT+AGG | 0.327953 | tig0043697:+5321 | Msa1463860:three_prime_UTR |
AGAAATCGGAGTTGGTATTA+GGG | 0.328348 | tig0043697:-1955 | Msa1463860:intergenic |
TGTCATTCTTTGTTGATCCT+TGG | 0.335528 | tig0043697:-5167 | Msa1463860:intergenic |
GAATAGTTGAAGCTTACTTT+TGG | 0.351708 | tig0043697:+4029 | Msa1463860:CDS |
GCTCTTGGAATAGTAAATTC+TGG | 0.365262 | tig0043697:+4672 | Msa1463860:CDS |
TTTGTGCTTGATTACCTCAT+TGG | 0.372285 | tig0043697:-4832 | Msa1463860:intergenic |
CACTTGTCTTTAGGTTACTA+AGG | 0.384876 | tig0043697:+3029 | Msa1463860:CDS |
TCTTCTTATGCCTATTTCAA+TGG | 0.389051 | tig0043697:-5331 | Msa1463860:intergenic |
GCCATGTACTCTTCTATTGT+TGG | 0.400220 | tig0043697:-4651 | Msa1463860:intergenic |
TTTGGATGTTTATGAAGAAA+TGG | 0.403778 | tig0043697:+4352 | Msa1463860:CDS |
ATTGATTCAATCCAACGTTT+GGG | 0.408878 | tig0043697:+2899 | Msa1463860:CDS |
CTCAATACTCTGTTGGTAGA+AGG | 0.414840 | tig0043697:+4074 | Msa1463860:CDS |
CAAGAACTTGCCTAGGCTAC+TGG | 0.415662 | tig0043697:+3729 | Msa1463860:CDS |
GCATTACATTTCCACTTATG+AGG | 0.423418 | tig0043697:+3756 | Msa1463860:CDS |
TCCATGTCCAATATGAGTAA+AGG | 0.424065 | tig0043697:+5209 | Msa1463860:exon |
TCAATATGTCTTGGAACCTA+TGG | 0.434054 | tig0043697:+2027 | Msa1463860:CDS |
GCCACACATATGAGGATTCA+TGG | 0.435188 | tig0043697:+3589 | Msa1463860:CDS |
TCAAATTAGCTTCCCTCAAA+GGG | 0.439126 | tig0043697:-2877 | Msa1463860:intergenic |
AACAACATCCTTCGTTGGAA+TGG | 0.440069 | tig0043697:+4710 | Msa1463860:CDS |
CTCCGATTTCTCTAGACGTT+CGG | 0.441215 | tig0043697:+1967 | Msa1463860:CDS |
CCATGTCCAATATGAGTAAA+GGG | 0.444601 | tig0043697:+5210 | Msa1463860:exon |
CCCTTTACTCATATTGGACA+TGG | 0.445169 | tig0043697:-5210 | Msa1463860:intergenic |
TTAATTTCTGTAGCAAGAAA+AGG | 0.447664 | tig0043697:-3682 | Msa1463860:intergenic |
TGCCGAACGTCTAGAGAAAT+CGG | 0.450185 | tig0043697:-1969 | Msa1463860:intergenic |
ATAGAAGAGTACATGGCTCT+TGG | 0.456178 | tig0043697:+4657 | Msa1463860:CDS |
ACTATTCTGTTGCGAGCAAA+AGG | 0.456530 | tig0043697:-4013 | Msa1463860:intergenic |
ACAACATCCTTCGTTGGAAT+GGG | 0.463666 | tig0043697:+4711 | Msa1463860:CDS |
ATTGATGTGCTTTATAAAGA+TGG | 0.464933 | tig0043697:+5126 | Msa1463860:CDS |
CATACTTTACTGAGGCTCAA+TGG | 0.470064 | tig0043697:+4610 | Msa1463860:CDS |
AAAATGTCACAAACCCTTTG+AGG | 0.477504 | tig0043697:+2864 | Msa1463860:CDS |
AAACAACATCAGAAAGAAGT+TGG | 0.478105 | tig0043697:+3841 | Msa1463860:CDS |
TGTATGAAGCCACACATATG+AGG | 0.482529 | tig0043697:+3581 | Msa1463860:CDS |
ATCAAATTAGCTTCCCTCAA+AGG | 0.485801 | tig0043697:-2878 | Msa1463860:intergenic |
ACTCGCATAAGGAGAGGCTT+TGG | 0.486941 | tig0043697:-5084 | Msa1463860:intergenic |
ATCTAAAATTGCTAGACTCA+TGG | 0.490115 | tig0043697:+4797 | Msa1463860:CDS |
GAGCCTCAGTAAAGTATGCC+TGG | 0.491242 | tig0043697:-4605 | Msa1463860:intergenic |
CAAGACAAGTCACAAATGCT+TGG | 0.491285 | tig0043697:+5022 | Msa1463860:CDS |
TGCACAATAGATGAAAAGAT+TGG | 0.497980 | tig0043697:+4581 | Msa1463860:intron |
CAATGTCATGCTCAAAATGA+TGG | 0.500528 | tig0043697:-2928 | Msa1463860:intergenic |
AACTTCAAAGAAACACTTGT+TGG | 0.503713 | tig0043697:+3535 | Msa1463860:CDS |
TTCTTCATAAACATCCAAAA+CGG | 0.505524 | tig0043697:-4348 | Msa1463860:intergenic |
AGAGGGATCTTCCTCATAAG+TGG | 0.512911 | tig0043697:-3767 | Msa1463860:intergenic |
TAATGCCTTGCCAGTAGCCT+AGG | 0.520942 | tig0043697:-3739 | Msa1463860:intergenic |
AAATGTCACAAACCCTTTGA+GGG | 0.523712 | tig0043697:+2865 | Msa1463860:CDS |
ATTGAGTGGTCATCATTTCA+AGG | 0.523890 | tig0043697:-3654 | Msa1463860:intergenic |
TCGGAGTTGGTATTAGGGGT+TGG | 0.524425 | tig0043697:-1950 | Msa1463860:intergenic |
GAAATCGGAGTTGGTATTAG+GGG | 0.527233 | tig0043697:-1954 | Msa1463860:intergenic |
TTTGAGCCTCAATACTCTGT+TGG | 0.527980 | tig0043697:+4067 | Msa1463860:CDS |
TAGCAAAATTTCATGTATTG+TGG | 0.530446 | tig0043697:-4320 | Msa1463860:intergenic |
ATCATCAATTACTGAGGCCA+AGG | 0.530914 | tig0043697:-4116 | Msa1463860:intergenic |
ACAAATTGAGAACTCGCATA+AGG | 0.532358 | tig0043697:-5095 | Msa1463860:intergenic |
AAGAAGTTCAAGAATGAGCA+AGG | 0.540053 | tig0043697:+3511 | Msa1463860:CDS |
ATCACAACAACATCCTTCGT+TGG | 0.542322 | tig0043697:+4705 | Msa1463860:CDS |
ATAGATGAAAAGATTGGTCC+AGG | 0.544707 | tig0043697:+4587 | Msa1463860:intron |
ACAAGTCACAAATGCTTGGA+AGG | 0.546592 | tig0043697:+5026 | Msa1463860:CDS |
AATGACCAAGGTGATATCCT+TGG | 0.547258 | tig0043697:+4099 | Msa1463860:CDS |
TTTGAGCAAGAGAGAGGGCA+TGG | 0.551451 | tig0043697:+4931 | Msa1463860:CDS |
AGACAAGTGCAATTGAATGA+AGG | 0.552478 | tig0043697:-3015 | Msa1463860:intergenic |
TAGGTGGGATATAAGTTGCA+TGG | 0.561499 | tig0043697:+4289 | Msa1463860:intron |
AGCAAAGTTGCATCATGAGA+GGG | 0.572891 | tig0043697:-3784 | Msa1463860:intergenic |
AATTAGTTTGAGCAAGAGAG+AGG | 0.573171 | tig0043697:+4925 | Msa1463860:intron |
GGATGATATTGTTTCCAATG+AGG | 0.573519 | tig0043697:+4818 | Msa1463860:CDS |
AACACTTGTTGGTGATGTTG+AGG | 0.576884 | tig0043697:+3546 | Msa1463860:CDS |
ACACTTGTTGGTGATGTTGA+GGG | 0.577847 | tig0043697:+3547 | Msa1463860:CDS |
TGAAGAAATGGAGCAAGAGA+TGG | 0.580004 | tig0043697:+4364 | Msa1463860:CDS |
CACTCTTCAAGAACTTGCCT+AGG | 0.581377 | tig0043697:+3722 | Msa1463860:CDS |
ATTACCACCCCAACATTTGG+GGG | 0.583067 | tig0043697:+1993 | Msa1463860:CDS |
AATTACCACCCCAACATTTG+GGG | 0.585116 | tig0043697:+1992 | Msa1463860:CDS |
ACCAACAATAGAAGAGTACA+TGG | 0.590550 | tig0043697:+4650 | Msa1463860:CDS |
TCCATGAATCCTCATATGTG+TGG | 0.591257 | tig0043697:-3590 | Msa1463860:intergenic |
ATTAGTTTGAGCAAGAGAGA+GGG | 0.599571 | tig0043697:+4926 | Msa1463860:intron |
CTTCTACCAACAGAGTATTG+AGG | 0.601314 | tig0043697:-4073 | Msa1463860:intergenic |
TAGCAAAGTTGCATCATGAG+AGG | 0.612571 | tig0043697:-3785 | Msa1463860:intergenic |
GGGATGCATTGCTACAGAAG+AGG | 0.614970 | tig0043697:+4731 | Msa1463860:CDS |
GAGCAAGAGATGGTCAAGGA+AGG | 0.615004 | tig0043697:+4374 | Msa1463860:CDS |
CTAGGCAAGTTCTTGAAGAG+TGG | 0.622912 | tig0043697:-3721 | Msa1463860:intergenic |
ACGTCTAGAGAAATCGGAGT+TGG | 0.629425 | tig0043697:-1963 | Msa1463860:intergenic |
AATGCATCCCATTCCAACGA+AGG | 0.632549 | tig0043697:-4718 | Msa1463860:intergenic |
GATGGTATAATCCCAAACGT+TGG | 0.633632 | tig0043697:-2910 | Msa1463860:intergenic |
ACATATGAGGATTCATGGAG+AGG | 0.637251 | tig0043697:+3594 | Msa1463860:CDS |
TTACCACCCCAACATTTGGG+GGG | 0.640939 | tig0043697:+1994 | Msa1463860:CDS |
TTTAGGTTACTAAGGCAACA+AGG | 0.641189 | tig0043697:+3037 | Msa1463860:CDS |
AAATTAATCATAGCTTAAAG+CGG | 0.641455 | tig0043697:+3698 | Msa1463860:CDS |
GGTCATCATTTCAAGGTGTG+AGG | 0.643197 | tig0043697:-3647 | Msa1463860:intergenic |
TGAGGCCAAGGATATCACCT+TGG | 0.643385 | tig0043697:-4104 | Msa1463860:intergenic |
GATTGCTATACTAACTCCCA+AGG | 0.653661 | tig0043697:+5150 | Msa1463860:CDS |
AAGAAAAGGACTCAATTGAG+TGG | 0.658799 | tig0043697:-3668 | Msa1463860:intergenic |
AATGGAGCAAGAGATGGTCA+AGG | 0.660378 | tig0043697:+4370 | Msa1463860:CDS |
TTGAGAACTCGCATAAGGAG+AGG | 0.660485 | tig0043697:-5090 | Msa1463860:intergenic |
ACTTGCCTAGGCTACTGGCA+AGG | 0.666735 | tig0043697:+3734 | Msa1463860:CDS |
CATGTAGCACTCAATAGCAG+AGG | 0.671786 | tig0043697:-4956 | Msa1463860:intergenic |
ATATATATCATCAATTACTG+AGG | 0.671981 | tig0043697:-4122 | Msa1463860:intergenic |
GGTCCAGGCATACTTTACTG+AGG | 0.678982 | tig0043697:+4602 | Msa1463860:CDS |
TGCTTGGAAGGATATCAATG+AGG | 0.688978 | tig0043697:+5038 | Msa1463860:CDS |
TGGTAGAAGGATAATGACCA+AGG | 0.706697 | tig0043697:+4087 | Msa1463860:CDS |
GAGTGCTACATGAATGAACA+TGG | 0.715393 | tig0043697:+4967 | Msa1463860:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTTAAAAAATCACATAATT+TGG | - | tig0043697:3292-3311 | Msa1463860:intergenic | 10.0% |
!!! | TGATTTTTTAAAATTATTAG+TGG | + | tig0043697:3299-3318 | Msa1463860:intron | 10.0% |
!! | ACAAAATTAAAATGATTAAA+TGG | + | tig0043697:3434-3453 | Msa1463860:intron | 10.0% |
!!! | AATATTGAACTATTTTTTTA+TGG | + | tig0043697:4228-4247 | Msa1463860:intron | 10.0% |
!! | TTTAATTCAAATTAATTAAG+AGG | - | tig0043697:4265-4284 | Msa1463860:intergenic | 10.0% |
!!! | TTAATTTGAATTAAAATTCT+AGG | + | tig0043697:4270-4289 | Msa1463860:intron | 10.0% |
!!! | AAATTTTACTCTTACTTTAA+TGG | + | tig0043697:2218-2237 | Msa1463860:intron | 15.0% |
!!! | AATTTTACTCTTACTTTAAT+GGG | + | tig0043697:2219-2238 | Msa1463860:intron | 15.0% |
!! | AATGCTATTAAAATTAAGTA+GGG | - | tig0043697:2705-2724 | Msa1463860:intergenic | 15.0% |
!! | AAATGCTATTAAAATTAAGT+AGG | - | tig0043697:2704-2723 | Msa1463860:intergenic | 15.0% |
!!! | AATTTTGCAATAATTTTTTG+CGG | - | tig0043697:2450-2469 | Msa1463860:intergenic | 15.0% |
!! | AGATAAAAAGTAATAAAATC+TGG | - | tig0043697:2485-2504 | Msa1463860:intergenic | 15.0% |
!! | TTCAAAAATTTAAGAGTTTA+AGG | + | tig0043697:2615-2634 | Msa1463860:intron | 15.0% |
!! | AAATGCTATTAAAATTAAGT+AGG | + | tig0043697:2704-2723 | Msa1463860:intron | 15.0% |
!! | AATGCTATTAAAATTAAGTA+GGG | + | tig0043697:2705-2724 | Msa1463860:intron | 15.0% |
!!! | TTTGTTTTCTTTAATGAATT+AGG | + | tig0043697:3957-3976 | Msa1463860:intron | 15.0% |
!!! | AAGAATTTTTACTTCATTTT+TGG | - | tig0043697:4423-4442 | Msa1463860:intergenic | 15.0% |
!! | TAGGTTATATATATTACCAT+AGG | - | tig0043697:2046-2065 | Msa1463860:intergenic | 20.0% |
!!! | AGTAAAATTTTGTGACAATT+GGG | - | tig0043697:2208-2227 | Msa1463860:intergenic | 20.0% |
!! | AAACAAATTTGAATTGAGTA+GGG | - | tig0043697:2355-2374 | Msa1463860:intergenic | 20.0% |
!! | TAAACAAATTTGAATTGAGT+AGG | - | tig0043697:2356-2375 | Msa1463860:intergenic | 20.0% |
!! | AAATTAATCATAGCTTAAAG+CGG | + | tig0043697:3698-3717 | Msa1463860:CDS | 20.0% |
!! | AAGCAAATTGAAATCTAATT+TGG | - | tig0043697:3818-3837 | Msa1463860:intergenic | 20.0% |
!! | ATATATATCATCAATTACTG+AGG | - | tig0043697:4125-4144 | Msa1463860:intergenic | 20.0% |
!! | GATGATATATATGATGTTTA+TGG | + | tig0043697:4133-4152 | Msa1463860:CDS | 20.0% |
!! | AATATTGAGATGTGAAAATT+TGG | - | tig0043697:4214-4233 | Msa1463860:intergenic | 20.0% |
!! | ATTTGAATTAAAATTCTAGG+TGG | + | tig0043697:4273-4292 | Msa1463860:intron | 20.0% |
!! | TTTGAATTAAAATTCTAGGT+GGG | + | tig0043697:4274-4293 | Msa1463860:intron | 20.0% |
!!! | CATATTCTTGTAAATTGTTT+TGG | + | tig0043697:4552-4571 | Msa1463860:intron | 20.0% |
!!! | CTATGAAGTTTTCAATTATT+GGG | + | tig0043697:5273-5292 | Msa1463860:three_prime_UTR | 20.0% |
! | CCAAGACATATTGAATAAAA+AGG | - | tig0043697:2021-2040 | Msa1463860:intergenic | 25.0% |
!! | CCTTTTTATTCAATATGTCT+TGG | + | tig0043697:2018-2037 | Msa1463860:CDS | 25.0% |
!! | GTAAAATTTTGTGACAATTG+GGG | - | tig0043697:2207-2226 | Msa1463860:intergenic | 25.0% |
!! | GAGTAAAATTTTGTGACAAT+TGG | - | tig0043697:2209-2228 | Msa1463860:intergenic | 25.0% |
! | AGTGCAGAAAAACAAAATTA+GGG | - | tig0043697:2322-2341 | Msa1463860:intergenic | 25.0% |
!!! | TAATTTTGTTTTTCTGCACT+GGG | + | tig0043697:2322-2341 | Msa1463860:intron | 25.0% |
!!! | TAATCAAACTTTGTTTTAGC+AGG | + | tig0043697:2643-2662 | Msa1463860:intron | 25.0% |
!!! | AATCAAACTTTGTTTTAGCA+GGG | + | tig0043697:2644-2663 | Msa1463860:intron | 25.0% |
! | CACAATAATCATGTTGAAAA+TGG | + | tig0043697:2971-2990 | Msa1463860:CDS | 25.0% |
! | AAATCTAATACAAGTAGACA+AGG | - | tig0043697:3090-3109 | Msa1463860:intergenic | 25.0% |
! | CTTAACCATATATTATCATG+TGG | + | tig0043697:3473-3492 | Msa1463860:intron | 25.0% |
! | TTAATTTCTGTAGCAAGAAA+AGG | - | tig0043697:3685-3704 | Msa1463860:intergenic | 25.0% |
!! | GTTTTCTTTAATGAATTAGG+TGG | + | tig0043697:3960-3979 | Msa1463860:intron | 25.0% |
! | TAGCAAAATTTCATGTATTG+TGG | - | tig0043697:4323-4342 | Msa1463860:intergenic | 25.0% |
! | TTCTTCATAAACATCCAAAA+CGG | - | tig0043697:4351-4370 | Msa1463860:intergenic | 25.0% |
! | TTTGGATGTTTATGAAGAAA+TGG | + | tig0043697:4352-4371 | Msa1463860:CDS | 25.0% |
! | ATTGATGTGCTTTATAAAGA+TGG | + | tig0043697:5126-5145 | Msa1463860:CDS | 25.0% |
!! | GCTATGAAGTTTTCAATTAT+TGG | + | tig0043697:5272-5291 | Msa1463860:three_prime_UTR | 25.0% |
TTCAGTGTAATTACAAGTGT+CGG | - | tig0043697:2142-2161 | Msa1463860:intergenic | 30.0% | |
!! | TACAAGGTCGCTATTTTATA+GGG | - | tig0043697:2736-2755 | Msa1463860:intergenic | 30.0% |
!! | TTACAAGGTCGCTATTTTAT+AGG | - | tig0043697:2735-2754 | Msa1463860:intergenic | 30.0% |
CAGTGCAGAAAAACAAAATT+AGG | - | tig0043697:2323-2342 | Msa1463860:intergenic | 30.0% | |
!!! | CTAATTTTGTTTTTCTGCAC+TGG | + | tig0043697:2321-2340 | Msa1463860:intron | 30.0% |
CAAGATTAGAACACTATGAA+AGG | - | tig0043697:2581-2600 | Msa1463860:intergenic | 30.0% | |
!! | TTACAAGGTCGCTATTTTAT+AGG | + | tig0043697:2735-2754 | Msa1463860:intron | 30.0% |
!! | TACAAGGTCGCTATTTTATA+GGG | + | tig0043697:2736-2755 | Msa1463860:intron | 30.0% |
AATTCCTGCACATTAAAGTA+GGG | - | tig0043697:2779-2798 | Msa1463860:intergenic | 30.0% | |
AAATTCCTGCACATTAAAGT+AGG | - | tig0043697:2780-2799 | Msa1463860:intergenic | 30.0% | |
TAGTGCTAAAAGAAAAAGTG+AGG | + | tig0043697:2822-2841 | Msa1463860:CDS | 30.0% | |
! | GGTTTGTGACATTTTTGTTA+GGG | - | tig0043697:2859-2878 | Msa1463860:intergenic | 30.0% |
! | ATTGATTCAATCCAACGTTT+GGG | + | tig0043697:2899-2918 | Msa1463860:CDS | 30.0% |
ATTCAATTGCACTTGTCTTT+AGG | + | tig0043697:3020-3039 | Msa1463860:CDS | 30.0% | |
GTTAGTGTCTGTATCATATT+CGG | + | tig0043697:3331-3350 | Msa1463860:intron | 30.0% | |
TCAATATATGCTATGAAGCA+CGG | - | tig0043697:3372-3391 | Msa1463860:intergenic | 30.0% | |
TAGCATATATTGATCTCCAT+CGG | + | tig0043697:3379-3398 | Msa1463860:intron | 30.0% | |
GAGAACCACATGATAATATA+TGG | - | tig0043697:3481-3500 | Msa1463860:intergenic | 30.0% | |
AACTTCAAAGAAACACTTGT+TGG | + | tig0043697:3535-3554 | Msa1463860:CDS | 30.0% | |
AAACAACATCAGAAAGAAGT+TGG | + | tig0043697:3841-3860 | Msa1463860:CDS | 30.0% | |
TTCTTTAATGAATTAGGTGG+TGG | + | tig0043697:3963-3982 | Msa1463860:intron | 30.0% | |
! | GAATAGTTGAAGCTTACTTT+TGG | + | tig0043697:4029-4048 | Msa1463860:CDS | 30.0% |
!! | TGAAGCTTACTTTTGGATAT+TGG | + | tig0043697:4036-4055 | Msa1463860:CDS | 30.0% |
!! | GAAGCTTACTTTTGGATATT+GGG | + | tig0043697:4037-4056 | Msa1463860:CDS | 30.0% |
! | TTTTCACTCAAGCAATTGAA+AGG | + | tig0043697:4176-4195 | Msa1463860:CDS | 30.0% |
!! | ATTTTGCTATAAAGCCGTTT+TGG | + | tig0043697:4334-4353 | Msa1463860:CDS | 30.0% |
TGCACAATAGATGAAAAGAT+TGG | + | tig0043697:4581-4600 | Msa1463860:intron | 30.0% | |
!!! | ATTGACAATTTTGGGGTTAT+TGG | - | tig0043697:4772-4791 | Msa1463860:intergenic | 30.0% |
!!! | ATGAAGCATTGACAATTTTG+GGG | - | tig0043697:4779-4798 | Msa1463860:intergenic | 30.0% |
!!! | GATGAAGCATTGACAATTTT+GGG | - | tig0043697:4780-4799 | Msa1463860:intergenic | 30.0% |
!!! | AGATGAAGCATTGACAATTT+TGG | - | tig0043697:4781-4800 | Msa1463860:intergenic | 30.0% |
! | ATCTAAAATTGCTAGACTCA+TGG | + | tig0043697:4797-4816 | Msa1463860:CDS | 30.0% |
TCTTCTTATGCCTATTTCAA+TGG | - | tig0043697:5334-5353 | Msa1463860:intergenic | 30.0% | |
!! | AGAAATCGGAGTTGGTATTA+GGG | - | tig0043697:1958-1977 | Msa1285160:intergenic | 35.0% |
AAATTACCACCCCAACATTT+GGG | + | tig0043697:1991-2010 | Msa1463860:CDS | 35.0% | |
TCAATATGTCTTGGAACCTA+TGG | + | tig0043697:2027-2046 | Msa1463860:CDS | 35.0% | |
AAGTAGGGACTAAACTTACA+AGG | - | tig0043697:2720-2739 | Msa1463860:intergenic | 35.0% | |
AAGTAGGGACTAAACTTACA+AGG | + | tig0043697:2720-2739 | Msa1463860:intron | 35.0% | |
TTAACCCTACTTTAATGTGC+AGG | + | tig0043697:2772-2791 | Msa1463860:intron | 35.0% | |
! | GGGTTTGTGACATTTTTGTT+AGG | - | tig0043697:2860-2879 | Msa1463860:intergenic | 35.0% |
AAAATGTCACAAACCCTTTG+AGG | + | tig0043697:2864-2883 | Msa1463860:CDS | 35.0% | |
AAATGTCACAAACCCTTTGA+GGG | + | tig0043697:2865-2884 | Msa1463860:CDS | 35.0% | |
! | TCAAATTAGCTTCCCTCAAA+GGG | - | tig0043697:2880-2899 | Msa1463860:intergenic | 35.0% |
! | ATCAAATTAGCTTCCCTCAA+AGG | - | tig0043697:2881-2900 | Msa1463860:intergenic | 35.0% |
! | GATTGATTCAATCCAACGTT+TGG | + | tig0043697:2898-2917 | Msa1463860:CDS | 35.0% |
CAATGTCATGCTCAAAATGA+TGG | - | tig0043697:2931-2950 | Msa1463860:intergenic | 35.0% | |
! | CATCATTTTGAGCATGACAT+TGG | + | tig0043697:2929-2948 | Msa1463860:CDS | 35.0% |
AGACAAGTGCAATTGAATGA+AGG | - | tig0043697:3018-3037 | Msa1463860:intergenic | 35.0% | |
! | CACTTGTCTTTAGGTTACTA+AGG | + | tig0043697:3029-3048 | Msa1463860:CDS | 35.0% |
! | TTTAGGTTACTAAGGCAACA+AGG | + | tig0043697:3037-3056 | Msa1463860:CDS | 35.0% |
! | ACAAGGATATCACATTTTGC+CGG | + | tig0043697:3054-3073 | Msa1463860:CDS | 35.0% |
TAATACAAGTAGACAAGGTG+GGG | - | tig0043697:3085-3104 | Msa1463860:intergenic | 35.0% | |
CTAATACAAGTAGACAAGGT+GGG | - | tig0043697:3086-3105 | Msa1463860:intergenic | 35.0% | |
TCTAATACAAGTAGACAAGG+TGG | - | tig0043697:3087-3106 | Msa1463860:intergenic | 35.0% | |
! | TACTCTTTTTAGATGTGTCC+TGG | + | tig0043697:3214-3233 | Msa1463860:intron | 35.0% |
!! | ATCTCCATCGGTTTAATAAG+AGG | + | tig0043697:3391-3410 | Msa1463860:intron | 35.0% |
GAAACCTCTTATTAAACCGA+TGG | - | tig0043697:3398-3417 | Msa1463860:intergenic | 35.0% | |
AAGAAGTTCAAGAATGAGCA+AGG | + | tig0043697:3511-3530 | Msa1463860:CDS | 35.0% | |
ATTGAGTGGTCATCATTTCA+AGG | - | tig0043697:3657-3676 | Msa1463860:intergenic | 35.0% | |
AAGAAAAGGACTCAATTGAG+TGG | - | tig0043697:3671-3690 | Msa1463860:intergenic | 35.0% | |
GCATTACATTTCCACTTATG+AGG | + | tig0043697:3756-3775 | Msa1463860:CDS | 35.0% | |
! | ATAGATGAAAAGATTGGTCC+AGG | + | tig0043697:4587-4606 | Msa1463860:intron | 35.0% |
! | ACCAACAATAGAAGAGTACA+TGG | + | tig0043697:4650-4669 | Msa1463860:CDS | 35.0% |
GCTCTTGGAATAGTAAATTC+TGG | + | tig0043697:4672-4691 | Msa1463860:CDS | 35.0% | |
!! | CTACAGAAGAGGTTTTTCAA+TGG | + | tig0043697:4742-4761 | Msa1463860:CDS | 35.0% |
GGATGATATTGTTTCCAATG+AGG | + | tig0043697:4818-4837 | Msa1463860:CDS | 35.0% | |
TTTGTGCTTGATTACCTCAT+TGG | - | tig0043697:4835-4854 | Msa1463860:intergenic | 35.0% | |
! | AATTAGTTTGAGCAAGAGAG+AGG | + | tig0043697:4925-4944 | Msa1463860:intron | 35.0% |
! | ATTAGTTTGAGCAAGAGAGA+GGG | + | tig0043697:4926-4945 | Msa1463860:intron | 35.0% |
ACAAATTGAGAACTCGCATA+AGG | - | tig0043697:5098-5117 | Msa1463860:intergenic | 35.0% | |
GTCATTCTTTGTTGATCCTT+GGG | - | tig0043697:5169-5188 | Msa1463860:intergenic | 35.0% | |
TGTCATTCTTTGTTGATCCT+TGG | - | tig0043697:5170-5189 | Msa1463860:intergenic | 35.0% | |
TCCATGTCCAATATGAGTAA+AGG | + | tig0043697:5209-5228 | Msa1463860:exon | 35.0% | |
CCATGTCCAATATGAGTAAA+GGG | + | tig0043697:5210-5229 | Msa1463860:exon | 35.0% | |
CAAAGTCCCTTTACTCATAT+TGG | - | tig0043697:5219-5238 | Msa1463860:intergenic | 35.0% | |
GACAAACTAGCCATTGAAAT+AGG | + | tig0043697:5321-5340 | Msa1463860:three_prime_UTR | 35.0% | |
!! | GAAATCGGAGTTGGTATTAG+GGG | - | tig0043697:1957-1976 | Msa1285160:intergenic | 40.0% |
!! | GAGAAATCGGAGTTGGTATT+AGG | - | tig0043697:1959-1978 | Msa1285160:intergenic | 40.0% |
CAAATTACCACCCCAACATT+TGG | + | tig0043697:1990-2009 | Msa1463860:CDS | 40.0% | |
AATTACCACCCCAACATTTG+GGG | + | tig0043697:1992-2011 | Msa1463860:CDS | 40.0% | |
GATGGTATAATCCCAAACGT+TGG | - | tig0043697:2913-2932 | Msa1463860:intergenic | 40.0% | |
! | CAAGGATATCACATTTTGCC+GGG | + | tig0043697:3055-3074 | Msa1463860:CDS | 40.0% |
GAGTAGTGTTCGTGTTTCAT+AGG | - | tig0043697:3199-3218 | Msa1463860:intergenic | 40.0% | |
ATGAAGCACGGATACAAACA+TGG | - | tig0043697:3360-3379 | Msa1463860:intergenic | 40.0% | |
!! | AACACTTGTTGGTGATGTTG+AGG | + | tig0043697:3546-3565 | Msa1463860:CDS | 40.0% |
!! | ACACTTGTTGGTGATGTTGA+GGG | + | tig0043697:3547-3566 | Msa1463860:CDS | 40.0% |
TGTATGAAGCCACACATATG+AGG | + | tig0043697:3581-3600 | Msa1463860:CDS | 40.0% | |
TCCATGAATCCTCATATGTG+TGG | - | tig0043697:3593-3612 | Msa1463860:intergenic | 40.0% | |
ACATATGAGGATTCATGGAG+AGG | + | tig0043697:3594-3613 | Msa1463860:CDS | 40.0% | |
AGCAAAGTTGCATCATGAGA+GGG | - | tig0043697:3787-3806 | Msa1463860:intergenic | 40.0% | |
TAGCAAAGTTGCATCATGAG+AGG | - | tig0043697:3788-3807 | Msa1463860:intergenic | 40.0% | |
ACTATTCTGTTGCGAGCAAA+AGG | - | tig0043697:4016-4035 | Msa1463860:intergenic | 40.0% | |
TTTGAGCCTCAATACTCTGT+TGG | + | tig0043697:4067-4086 | Msa1463860:CDS | 40.0% | |
!! | CTTCTACCAACAGAGTATTG+AGG | - | tig0043697:4076-4095 | Msa1463860:intergenic | 40.0% |
! | CTCAATACTCTGTTGGTAGA+AGG | + | tig0043697:4074-4093 | Msa1463860:CDS | 40.0% |
TGGTAGAAGGATAATGACCA+AGG | + | tig0043697:4087-4106 | Msa1463860:CDS | 40.0% | |
AATGACCAAGGTGATATCCT+TGG | + | tig0043697:4099-4118 | Msa1463860:CDS | 40.0% | |
ATCATCAATTACTGAGGCCA+AGG | - | tig0043697:4119-4138 | Msa1463860:intergenic | 40.0% | |
TAGGTGGGATATAAGTTGCA+TGG | + | tig0043697:4289-4308 | Msa1463860:intron | 40.0% | |
TGAAGAAATGGAGCAAGAGA+TGG | + | tig0043697:4364-4383 | Msa1463860:CDS | 40.0% | |
CATACTTTACTGAGGCTCAA+TGG | + | tig0043697:4610-4629 | Msa1463860:CDS | 40.0% | |
GCCATGTACTCTTCTATTGT+TGG | - | tig0043697:4654-4673 | Msa1463860:intergenic | 40.0% | |
! | ATAGAAGAGTACATGGCTCT+TGG | + | tig0043697:4657-4676 | Msa1463860:CDS | 40.0% |
ATCACAACAACATCCTTCGT+TGG | + | tig0043697:4705-4724 | Msa1463860:CDS | 40.0% | |
AACAACATCCTTCGTTGGAA+TGG | + | tig0043697:4710-4729 | Msa1463860:CDS | 40.0% | |
ACAACATCCTTCGTTGGAAT+GGG | + | tig0043697:4711-4730 | Msa1463860:CDS | 40.0% | |
GAGTGCTACATGAATGAACA+TGG | + | tig0043697:4967-4986 | Msa1463860:CDS | 40.0% | |
CAAGACAAGTCACAAATGCT+TGG | + | tig0043697:5022-5041 | Msa1463860:CDS | 40.0% | |
ACAAGTCACAAATGCTTGGA+AGG | + | tig0043697:5026-5045 | Msa1463860:CDS | 40.0% | |
TGCTTGGAAGGATATCAATG+AGG | + | tig0043697:5038-5057 | Msa1463860:CDS | 40.0% | |
GATTGCTATACTAACTCCCA+AGG | + | tig0043697:5150-5169 | Msa1463860:CDS | 40.0% | |
CCCTTTACTCATATTGGACA+TGG | - | tig0043697:5213-5232 | Msa1463860:intergenic | 40.0% | |
ACGTCTAGAGAAATCGGAGT+TGG | - | tig0043697:1966-1985 | Msa1285160:intergenic | 45.0% | |
CTCCGATTTCTCTAGACGTT+CGG | + | tig0043697:1967-1986 | Msa1463860:CDS | 45.0% | |
TGCCGAACGTCTAGAGAAAT+CGG | - | tig0043697:1972-1991 | Msa1463860:intergenic | 45.0% | |
ATTACCACCCCAACATTTGG+GGG | + | tig0043697:1993-2012 | Msa1463860:CDS | 45.0% | |
AAAAGGTCCCCCCAAATGTT+GGG | - | tig0043697:2004-2023 | Msa1463860:intergenic | 45.0% | |
AAAAAGGTCCCCCCAAATGT+TGG | - | tig0043697:2005-2024 | Msa1463860:intergenic | 45.0% | |
TATGAAGCACAGACACTCCT+CGG | + | tig0043697:2064-2083 | Msa1463860:intron | 45.0% | |
GCCACACATATGAGGATTCA+TGG | + | tig0043697:3589-3608 | Msa1463860:CDS | 45.0% | |
GGTCATCATTTCAAGGTGTG+AGG | - | tig0043697:3650-3669 | Msa1463860:intergenic | 45.0% | |
CTAGGCAAGTTCTTGAAGAG+TGG | - | tig0043697:3724-3743 | Msa1463860:intergenic | 45.0% | |
CACTCTTCAAGAACTTGCCT+AGG | + | tig0043697:3722-3741 | Msa1463860:CDS | 45.0% | |
AGAGGGATCTTCCTCATAAG+TGG | - | tig0043697:3770-3789 | Msa1463860:intergenic | 45.0% | |
! | GTGTCTGAAACGTCTCGAAT+AGG | - | tig0043697:3915-3934 | Msa1463860:intergenic | 45.0% |
AATGGAGCAAGAGATGGTCA+AGG | + | tig0043697:4370-4389 | Msa1463860:CDS | 45.0% | |
AATGCATCCCATTCCAACGA+AGG | - | tig0043697:4721-4740 | Msa1463860:intergenic | 45.0% | |
CATGTAGCACTCAATAGCAG+AGG | - | tig0043697:4959-4978 | Msa1463860:intergenic | 45.0% | |
! | AGAGGCTTTGGCACTTGAAT+TGG | - | tig0043697:5075-5094 | Msa1463860:intergenic | 45.0% |
TTGAGAACTCGCATAAGGAG+AGG | - | tig0043697:5093-5112 | Msa1463860:intergenic | 45.0% | |
!!! | TATAAGTAAATTTTTTTTAT+AGG | + | tig0043697:2675-2694 | Msa1463860:intron | 5.0% |
!!! | ATAAGTAAATTTTTTTTATA+GGG | + | tig0043697:2676-2695 | Msa1463860:intron | 5.0% |
!! | AATAAAAAAATAAAAAAACA+AGG | - | tig0043697:4459-4478 | Msa1463860:intergenic | 5.0% |
!! | AAAATATAAATTTAAAAGAT+AGG | - | tig0043697:4875-4894 | Msa1463860:intergenic | 5.0% |
!! | TCGGAGTTGGTATTAGGGGT+TGG | - | tig0043697:1953-1972 | Msa1285160:intergenic | 50.0% |
TTACCACCCCAACATTTGGG+GGG | + | tig0043697:1994-2013 | Msa1463860:CDS | 50.0% | |
AAAGGTCCCCCCAAATGTTG+GGG | - | tig0043697:2003-2022 | Msa1463860:intergenic | 50.0% | |
!! | GAGGAGTGTCTGTGCTTCAT+AGG | - | tig0043697:2065-2084 | Msa1463860:intergenic | 50.0% |
!! | TACAAGTGTCGGTGTCGTGT+TGG | - | tig0043697:2131-2150 | Msa1463860:intergenic | 50.0% |
TAGACAAGGTGGGGTTTACC+CGG | - | tig0043697:3076-3095 | Msa1463860:intergenic | 50.0% | |
ATCATGTGTCAGAGTCGCGT+CGG | - | tig0043697:3265-3284 | Msa1463860:intergenic | 50.0% | |
CAAGAACTTGCCTAGGCTAC+TGG | + | tig0043697:3729-3748 | Msa1463860:CDS | 50.0% | |
TAATGCCTTGCCAGTAGCCT+AGG | - | tig0043697:3742-3761 | Msa1463860:intergenic | 50.0% | |
TGAGGCCAAGGATATCACCT+TGG | - | tig0043697:4107-4126 | Msa1463860:intergenic | 50.0% | |
GAGCAAGAGATGGTCAAGGA+AGG | + | tig0043697:4374-4393 | Msa1463860:CDS | 50.0% | |
GGTCCAGGCATACTTTACTG+AGG | + | tig0043697:4602-4621 | Msa1463860:CDS | 50.0% | |
GAGCCTCAGTAAAGTATGCC+TGG | - | tig0043697:4608-4627 | Msa1463860:intergenic | 50.0% | |
GGGATGCATTGCTACAGAAG+AGG | + | tig0043697:4731-4750 | Msa1463860:CDS | 50.0% | |
TTTGAGCAAGAGAGAGGGCA+TGG | + | tig0043697:4931-4950 | Msa1463860:CDS | 50.0% | |
ACTCGCATAAGGAGAGGCTT+TGG | - | tig0043697:5087-5106 | Msa1463860:intergenic | 50.0% | |
GCACAGACACTCCTCGGATT+AGG | + | tig0043697:2070-2089 | Msa1463860:intron | 55.0% | |
!! | TGTCGGTGTCGTGTTGGTGT+CGG | - | tig0043697:2125-2144 | Msa1463860:intergenic | 55.0% |
AACGACACGTGTTCGACACC+AGG | - | tig0043697:3235-3254 | Msa1463860:intergenic | 55.0% | |
ACTTGCCTAGGCTACTGGCA+AGG | + | tig0043697:3734-3753 | Msa1463860:CDS | 55.0% | |
! | TCCTCGGATTAGGCGTGTCC+CGG | + | tig0043697:2080-2099 | Msa1463860:intron | 60.0% |
GATTAGGCGTGTCCCGGTGT+CGG | + | tig0043697:2086-2105 | Msa1463860:intron | 60.0% | |
ACACGACACGTGTCCGACAC+CGG | - | tig0043697:2102-2121 | Msa1463860:intergenic | 60.0% | |
! | TGTCAGAGTCGCGTCGGTGT+TGG | - | tig0043697:3259-3278 | Msa1463860:intergenic | 60.0% |
GGTCCCCCCAAATGTTGGGG+TGG | - | tig0043697:2000-2019 | Msa1463860:intergenic | 65.0% | |
ACCGGGACACGCCTAATCCG+AGG | - | tig0043697:2084-2103 | Msa1463860:intergenic | 65.0% | |
CACGACACGTGTCCGACACC+GGG | - | tig0043697:2101-2120 | Msa1463860:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
tig0043697 | gene | 1917 | 5366 | 1917 | ID=Msa1463860;Name=Msa1463860 |
tig0043697 | mRNA | 1917 | 5366 | 1917 | ID=Msa1463860-mRNA-1;Parent=Msa1463860;Name=Msa1463860-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0.66|0.57|1|1|1|7|142|562 |
tig0043697 | exon | 1917 | 2048 | 1917 | ID=Msa1463860-mRNA-1:exon:24215;Parent=Msa1463860-mRNA-1 |
tig0043697 | exon | 2794 | 3076 | 2794 | ID=Msa1463860-mRNA-1:exon:24216;Parent=Msa1463860-mRNA-1 |
tig0043697 | exon | 3503 | 3875 | 3503 | ID=Msa1463860-mRNA-1:exon:24217;Parent=Msa1463860-mRNA-1 |
tig0043697 | exon | 3979 | 4197 | 3979 | ID=Msa1463860-mRNA-1:exon:24218;Parent=Msa1463860-mRNA-1 |
tig0043697 | exon | 4292 | 4430 | 4292 | ID=Msa1463860-mRNA-1:exon:24219;Parent=Msa1463860-mRNA-1 |
tig0043697 | exon | 4591 | 4839 | 4591 | ID=Msa1463860-mRNA-1:exon:24220;Parent=Msa1463860-mRNA-1 |
tig0043697 | exon | 4931 | 5366 | 4931 | ID=Msa1463860-mRNA-1:exon:24221;Parent=Msa1463860-mRNA-1 |
tig0043697 | CDS | 1917 | 2048 | 1917 | ID=Msa1463860-mRNA-1:cds;Parent=Msa1463860-mRNA-1 |
tig0043697 | CDS | 2794 | 3076 | 2794 | ID=Msa1463860-mRNA-1:cds;Parent=Msa1463860-mRNA-1 |
tig0043697 | CDS | 3503 | 3875 | 3503 | ID=Msa1463860-mRNA-1:cds;Parent=Msa1463860-mRNA-1 |
tig0043697 | CDS | 3979 | 4197 | 3979 | ID=Msa1463860-mRNA-1:cds;Parent=Msa1463860-mRNA-1 |
tig0043697 | CDS | 4292 | 4430 | 4292 | ID=Msa1463860-mRNA-1:cds;Parent=Msa1463860-mRNA-1 |
tig0043697 | CDS | 4591 | 4839 | 4591 | ID=Msa1463860-mRNA-1:cds;Parent=Msa1463860-mRNA-1 |
tig0043697 | CDS | 4931 | 5224 | 4931 | ID=Msa1463860-mRNA-1:cds;Parent=Msa1463860-mRNA-1 |
tig0043697 | three_prime_UTR | 5225 | 5366 | 5225 | ID=Msa1463860-mRNA-1:three_prime_utr;Parent=Msa1463860-mRNA-1 |
Gene Sequence |
Protein sequence |