AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0389080


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0389080 MtrunA17_Chr8g0339281 99.362 470 3 0 1 470 1 470 0.0 954
Msa0389080 MtrunA17_Chr4g0059081 74.522 471 116 3 1 469 1 469 0.0 726
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0389080 AT5G62790.1 73.830 470 114 4 1 465 2 467 0.0 696
Msa0389080 AT5G62790.2 70.468 491 115 5 1 465 1 487 0.0 684

Find 108 sgRNAs with CRISPR-Local

Find 382 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAGAACAATAGACTCTTTC+TGG 0.113929 3_1:-93692154 None:intergenic
CTGGTTCTGGAGGTGCTTTC+AGG 0.116417 3_1:+93691503 Msa0389080:CDS
ACGATACATCACTTTGATTT+TGG 0.128678 3_1:+93693109 Msa0389080:three_prime_UTR
TGCTCCCCAGGGATGATTTC+AGG 0.155639 3_1:-93690550 None:intergenic
GCAATATATATGTGTTAAAA+AGG 0.179844 3_1:+93692899 Msa0389080:three_prime_UTR
CCCACAACTCTAAATCTTTC+TGG 0.190443 3_1:-93689875 None:intergenic
CACCTCCAGAACCAGTTAAT+TGG 0.231332 3_1:-93691495 None:intergenic
ATGCATTAAAGCATCCTATT+TGG 0.236011 3_1:+93691684 Msa0389080:CDS
TTTCTTCCTAAACTCCAAAT+AGG 0.264648 3_1:-93691698 None:intergenic
AAAATCCAATTAACTGGTTC+TGG 0.278312 3_1:+93691490 Msa0389080:CDS
AAGCATCCTATTTGGAGTTT+AGG 0.286041 3_1:+93691692 Msa0389080:CDS
GTAACTACTGTGGCCGCATC+AGG 0.322322 3_1:-93690706 None:intergenic
CCAAAACCCATTTCTGTCTT+AGG 0.325179 3_1:+93688850 Msa0389080:CDS
TGTTACTCTTCTTGCTGAAC+AGG 0.340001 3_1:+93689916 Msa0389080:CDS
ATTGAAGCACACTACTTGTT+TGG 0.341913 3_1:+93691888 Msa0389080:CDS
CCTAAGACAGAAATGGGTTT+TGG 0.343835 3_1:-93688850 None:intergenic
TGCTATGCTGCCGGACGTGC+TGG 0.364387 3_1:+93692471 Msa0389080:CDS
TGATGAACTCAAAGAGGCTT+TGG 0.369480 3_1:+93690510 Msa0389080:CDS
AATTCATATAAGTTCTTCTC+TGG 0.371576 3_1:-93693022 None:intergenic
ATTTCTGTCTTAGGCTCAAC+TGG 0.373291 3_1:+93688859 Msa0389080:CDS
TTAGGCTCAACTGGTTCAAT+TGG 0.387627 3_1:+93688868 Msa0389080:CDS
AGAGTTGTGGGGCTTGCAGC+TGG 0.407476 3_1:+93689887 Msa0389080:CDS
TCTTCTGTTATTGCACAGTT+GGG 0.407522 3_1:+93692088 Msa0389080:CDS
GATGAAAGACATTAAGCTTA+AGG 0.407814 3_1:+93691661 Msa0389080:CDS
GGCTGAGGAATAGCTGTTCC+TGG 0.408782 3_1:-93688802 None:intergenic
ACAAAGTTACCTTATTGAAA+AGG 0.409791 3_1:-93691742 None:intergenic
CCAGAAAGATTTAGAGTTGT+GGG 0.417586 3_1:+93689875 Msa0389080:CDS
TTCTTCTGTTATTGCACAGT+TGG 0.418400 3_1:+93692087 Msa0389080:CDS
CTGGCCATGACAAAGTATAA+AGG 0.421069 3_1:-93692135 None:intergenic
TTTGTTTGTATAAAATGTAA+AGG 0.425025 3_1:+93692873 Msa0389080:three_prime_UTR
AATGAGGGCTTCACTTGAGC+TGG 0.425141 3_1:-93686850 None:intergenic
AGTTGGTTGTGCAGGATTGA+AGG 0.426456 3_1:+93690735 Msa0389080:CDS
GATGCGGCCACAGTAGTTAC+AGG 0.427903 3_1:+93690709 Msa0389080:CDS
TTTGGCTAATTCGTTGATCA+TGG 0.442514 3_1:+93686810 Msa0389080:exon
TCTATTGTTCTGAAATTACT+TGG 0.443822 3_1:+93692164 Msa0389080:CDS
AAATTCTTCACTATGATCAA+TGG 0.443929 3_1:+93692740 Msa0389080:CDS
TTTGCAGACACTTAATATAG+TGG 0.444020 3_1:+93689844 Msa0389080:intron
AGTTGAGCCTAAGACAGAAA+TGG 0.444065 3_1:-93688857 None:intergenic
ACAGTTGCGGCGATTGAAGC+AGG 0.447063 3_1:+93691228 Msa0389080:CDS
CAAAGTTACCTTATTGAAAA+GGG 0.449932 3_1:-93691741 None:intergenic
CATGGTGCCTCCAGCACGTC+CGG 0.450053 3_1:-93692481 None:intergenic
AGGAGTGGCAACCGCATGTC+AGG 0.450100 3_1:-93692115 None:intergenic
AACAAAGAGACAATGATTGC+TGG 0.450546 3_1:+93691270 Msa0389080:CDS
ATGTCTTTCATCTTCTCAGC+AGG 0.451171 3_1:-93691650 None:intergenic
ACAGGAATAGTTGGTTGTGC+AGG 0.452774 3_1:+93690727 Msa0389080:CDS
TTGTTTGTATAAAATGTAAA+GGG 0.455410 3_1:+93692874 Msa0389080:three_prime_UTR
GATGGAAACTTCTTAGTGTC+TGG 0.458287 3_1:-93692438 None:intergenic
GCTTCAATCGCCGCAACTGT+TGG 0.459796 3_1:-93691225 None:intergenic
AATTCTTCACTATGATCAAT+GGG 0.464591 3_1:+93692741 Msa0389080:CDS
GTTGAGCCTAAGACAGAAAT+GGG 0.465989 3_1:-93688856 None:intergenic
ACAGTAGTTACAGGAATAGT+TGG 0.466428 3_1:+93690718 Msa0389080:CDS
GGGCTTCACTTGAGCTGGGG+AGG 0.469449 3_1:-93686845 None:intergenic
CACAAACCTGAAATCATCCC+TGG 0.472085 3_1:+93690544 Msa0389080:CDS
AACTGGTTCAATTGGAACTC+AGG 0.475794 3_1:+93688876 Msa0389080:CDS
TCAATGACTCCTTGCTCCCC+AGG 0.481009 3_1:-93690562 None:intergenic
GTTCCTGGCCAAGCTGGTGG+TGG 0.483247 3_1:-93688787 None:intergenic
GGCTTCACTTGAGCTGGGGA+GGG 0.484400 3_1:-93686844 None:intergenic
CGAGTGGAAGAACTACATAT+TGG 0.486387 3_1:-93692981 None:intergenic
GTGCACCCTTTGGCAAACCT+TGG 0.492039 3_1:-93691462 None:intergenic
TTCTCTTCACAGTGTATCCA+AGG 0.495462 3_1:+93691445 Msa0389080:intron
GATTGTACTTGGTAAGATCA+AGG 0.497374 3_1:-93692192 None:intergenic
CACTCCTTTATACTTTGTCA+TGG 0.504667 3_1:+93692131 Msa0389080:CDS
TCACCACCACCAGCTTGGCC+AGG 0.507652 3_1:+93688784 Msa0389080:CDS
ATGAGGGCTTCACTTGAGCT+GGG 0.509509 3_1:-93686849 None:intergenic
CGTGCTGGAGGCACCATGAC+CGG 0.512996 3_1:+93692486 Msa0389080:CDS
CACACTCACCACCACCAGCT+TGG 0.516652 3_1:+93688779 Msa0389080:CDS
TCCAGAAAGATTTAGAGTTG+TGG 0.529260 3_1:+93689874 Msa0389080:CDS
TGAAGAATTTCTTCAAGTGT+AGG 0.529338 3_1:-93692727 None:intergenic
CTTTGCATTGAAGAGAAAAG+AGG 0.531645 3_1:+93688714 Msa0389080:CDS
GAAATCATCCCTGGGGAGCA+AGG 0.537606 3_1:+93690553 Msa0389080:CDS
GTGAATCTTTGCTATGCTGC+CGG 0.539876 3_1:+93692462 Msa0389080:CDS
ATGTTATTCTTGTGAGCAAG+AGG 0.541192 3_1:-93691309 None:intergenic
GAACTCAAAGAGGCTTTGGC+TGG 0.544181 3_1:+93690514 Msa0389080:CDS
TGTATCCAAGGTTTGCCAAA+GGG 0.545399 3_1:+93691457 Msa0389080:CDS
CGTAATTCAGTGAAATTCAT+CGG 0.546454 3_1:-93693089 None:intergenic
GCAGAATGTTCTGAATCAGC+AGG 0.549134 3_1:-93691342 None:intergenic
GTAGCTGTGTGGTCAATTGT+TGG 0.553090 3_1:+93692815 Msa0389080:three_prime_UTR
TAAAATTGATGAACTCAAAG+AGG 0.559890 3_1:+93690504 Msa0389080:CDS
ATAGCTGTTCCTGGCCAAGC+TGG 0.560525 3_1:-93688793 None:intergenic
TGGGCAAGACAATATGCTGC+TGG 0.564280 3_1:+93692760 Msa0389080:CDS
TGTTGTCAGTGTTCATTGAG+TGG 0.567366 3_1:+93686747 None:intergenic
CAATGACTCCTTGCTCCCCA+GGG 0.582111 3_1:-93690561 None:intergenic
ACAAACCTGAAATCATCCCT+GGG 0.582550 3_1:+93690545 Msa0389080:CDS
TTTGCATTGAAGAGAAAAGA+GGG 0.583030 3_1:+93688715 Msa0389080:CDS
TATGCTGCCGGACGTGCTGG+AGG 0.583393 3_1:+93692474 Msa0389080:CDS
ATCCAATTAACTGGTTCTGG+AGG 0.587262 3_1:+93691493 Msa0389080:CDS
TCTCTAAGAGCTACTAACTC+AGG 0.587556 3_1:-93690475 None:intergenic
AATGAATGTATGATAGATTG+TGG 0.591032 3_1:-93691945 None:intergenic
GCATAGCAAAGATTCACTGA+TGG 0.591366 3_1:-93692456 None:intergenic
AGCACTAAGAACTCCGGTCA+TGG 0.591579 3_1:-93692499 None:intergenic
GCTGTTCCTGGCCAAGCTGG+TGG 0.597035 3_1:-93688790 None:intergenic
CAGAAAGATTTAGAGTTGTG+GGG 0.597402 3_1:+93689876 Msa0389080:CDS
ACATTCATTAGTTGAAACAC+AGG 0.602985 3_1:+93691959 Msa0389080:CDS
TAACTACTGTGGCCGCATCA+GGG 0.604825 3_1:-93690705 None:intergenic
GTGTATCCAAGGTTTGCCAA+AGG 0.606096 3_1:+93691456 Msa0389080:intron
GGTTGCTCGTCACCCTGATG+CGG 0.616790 3_1:+93690693 Msa0389080:intron
CAGTTGCGGCGATTGAAGCA+GGG 0.637242 3_1:+93691229 Msa0389080:CDS
CATGACAAAGTATAAAGGAG+TGG 0.651485 3_1:-93692130 None:intergenic
GTTTGCAGCACTAAGAACTC+CGG 0.652712 3_1:-93692505 None:intergenic
AACTATTCCTGTAACTACTG+TGG 0.654183 3_1:-93690716 None:intergenic
TGAGGGCTTCACTTGAGCTG+GGG 0.662479 3_1:-93686848 None:intergenic
AAATTTATAACATCTTCGAG+TGG 0.674904 3_1:-93692997 None:intergenic
AAAGAGACAATGATTGCTGG+AGG 0.680798 3_1:+93691273 Msa0389080:CDS
TGGGGAGCAAGGAGTCATTG+AGG 0.682191 3_1:+93690564 Msa0389080:CDS
AGTTGGGATTACCTGACATG+CGG 0.683657 3_1:+93692104 Msa0389080:CDS
TTGAATCTCATGTAGCTGTG+TGG 0.713858 3_1:+93692804 Msa0389080:exon
TACTTGGTAAGATCAAGGCG+AGG 0.738378 3_1:-93692187 None:intergenic
CAAACCTGAAATCATCCCTG+GGG 0.777747 3_1:+93690546 Msa0389080:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GATTAATTATTTTTCTTAAA+AGG + chr3_1:93687334-93687353 Msa0389080:intron 10.0%
!!! TAATTTTATAGAGTAAAAAA+AGG + chr3_1:93688490-93688509 Msa0389080:intron 10.0%
!!! TTATTAAAAACTTCTATTTT+TGG - chr3_1:93689051-93689070 None:intergenic 10.0%
!!! TTATTTAATTTGTAGTATTA+AGG + chr3_1:93689623-93689642 Msa0389080:intron 10.0%
!!! TATGGTTGATATTTTTTTTT+TGG + chr3_1:93686960-93686979 Msa0389080:intron 15.0%
!!! AATATTATCATTTTTATGAC+CGG - chr3_1:93687064-93687083 None:intergenic 15.0%
!! ATAATAATAAGTTATAAGCA+AGG - chr3_1:93687134-93687153 None:intergenic 15.0%
!!! AATAAAATAATTTGTAACAC+AGG - chr3_1:93687167-93687186 None:intergenic 15.0%
!! AAAATATTAATAACTAACGA+AGG + chr3_1:93687258-93687277 Msa0389080:intron 15.0%
!! ACATAAATAAAAAATGATAG+TGG - chr3_1:93687381-93687400 None:intergenic 15.0%
!! TAAAAAAAAATTATTCACTG+CGG - chr3_1:93687778-93687797 None:intergenic 15.0%
!!! AATTTTTTTGTTTTTGTTGA+GGG - chr3_1:93687976-93687995 None:intergenic 15.0%
!!! TAATTTTTTTGTTTTTGTTG+AGG - chr3_1:93687977-93687996 None:intergenic 15.0%
!! AAAAATTATCTTTCTACATT+CGG + chr3_1:93687989-93688008 Msa0389080:intron 15.0%
!! ACAGACAAAATTATAATAAT+AGG - chr3_1:93688644-93688663 None:intergenic 15.0%
!!! CTATTTTAGTAAAAAAATGT+TGG + chr3_1:93688973-93688992 Msa0389080:intron 15.0%
!! TGTAAAATAACATATAAAGT+GGG - chr3_1:93688999-93689018 None:intergenic 15.0%
!! TTGTAAAATAACATATAAAG+TGG - chr3_1:93689000-93689019 None:intergenic 15.0%
!!! TATTTTTCAAAGGTATTTTA+AGG - chr3_1:93689568-93689587 None:intergenic 15.0%
!! AACACATTATATTGTAAAAA+AGG - chr3_1:93691990-93692009 None:intergenic 15.0%
!! AATAGTAAAAATATGAAACA+AGG - chr3_1:93692224-93692243 None:intergenic 15.0%
!! TTTGTTTGTATAAAATGTAA+AGG + chr3_1:93692873-93692892 Msa0389080:three_prime_UTR 15.0%
!! TTGTTTGTATAAAATGTAAA+GGG + chr3_1:93692874-93692893 Msa0389080:three_prime_UTR 15.0%
!! CAATATATATGTGTTAAAAA+GGG + chr3_1:93692900-93692919 Msa0389080:three_prime_UTR 15.0%
!!! TGATCAAAGTTTTTTTCATT+TGG + chr3_1:93686792-93686811 Msa0389080:five_prime_UTR 20.0%
!!! TTGATATTTTTTTTTTGGAG+AGG + chr3_1:93686965-93686984 Msa0389080:intron 20.0%
!! AAATAATCATTATCATGATC+CGG + chr3_1:93687042-93687061 Msa0389080:intron 20.0%
!! AAATATATGTTACAGAAAAG+AGG - chr3_1:93687101-93687120 None:intergenic 20.0%
!! GATTGGAAAAAGAATAATAT+AGG - chr3_1:93687211-93687230 None:intergenic 20.0%
!!! GTTATGATAATATTGATGAT+TGG - chr3_1:93687228-93687247 None:intergenic 20.0%
!! AAAAAAAAATTATTCACTGC+GGG - chr3_1:93687777-93687796 None:intergenic 20.0%
!!! AAAGTTTTTTTAAGCTTCAA+TGG + chr3_1:93687806-93687825 Msa0389080:intron 20.0%
!!! AAACTTTCATTGATAGTTAA+AGG - chr3_1:93687902-93687921 None:intergenic 20.0%
!!! ATTTTTTTGTTTTTGTTGAG+GGG - chr3_1:93687975-93687994 None:intergenic 20.0%
!! TACAACAATCAAAATAGAAT+TGG + chr3_1:93688213-93688232 Msa0389080:intron 20.0%
!! TAAATCATCTTATTATCAAC+TGG + chr3_1:93688441-93688460 Msa0389080:intron 20.0%
!! AGTTTAATAATTGTTTGATC+AGG + chr3_1:93688688-93688707 Msa0389080:intron 20.0%
!! CAATCATATAAAGTTTATGT+GGG + chr3_1:93689247-93689266 Msa0389080:intron 20.0%
!! AATCATATAAAGTTTATGTG+GGG + chr3_1:93689248-93689267 Msa0389080:intron 20.0%
!!! GTTTCAAAGATATTTTTCAA+AGG - chr3_1:93689578-93689597 None:intergenic 20.0%
!! ATTCTTTCATTTCAAAGATT+TGG - chr3_1:93689788-93689807 None:intergenic 20.0%
!!! AATAAGTTGAAAATAGCTTA+TGG - chr3_1:93690036-93690055 None:intergenic 20.0%
!!! CAGTATTAATTTTTTCTTTC+AGG + chr3_1:93690672-93690691 Msa0389080:intron 20.0%
!! ACATATTTATATGATACAAG+AGG + chr3_1:93691123-93691142 Msa0389080:intron 20.0%
!! TAGAACTAAAAGAAGTTTAT+TGG + chr3_1:93691155-93691174 Msa0389080:intron 20.0%
!! CTGTAGAAAATAATAACAAT+AGG - chr3_1:93691205-93691224 None:intergenic 20.0%
!!! TATTTTTACTATTTCGTAGA+CGG + chr3_1:93692231-93692250 Msa0389080:intron 20.0%
!! TTCATTGAAATATATTCTGA+TGG + chr3_1:93692385-93692404 Msa0389080:intron 20.0%
!! TAATGAACATCAAAAAGAAT+TGG + chr3_1:93692696-93692715 Msa0389080:CDS 20.0%
!! GCAATATATATGTGTTAAAA+AGG + chr3_1:93692899-93692918 Msa0389080:three_prime_UTR 20.0%
! ATGATATCAGAGAAAAATGA+GGG - chr3_1:93686868-93686887 None:intergenic 25.0%
!! ATAATTTGTAACACAGGTTA+TGG - chr3_1:93687161-93687180 None:intergenic 25.0%
! CAATATTATCATAACATCAC+AGG + chr3_1:93687233-93687252 Msa0389080:intron 25.0%
!!! GGCTTTGTCATATATTTTTT+TGG - chr3_1:93687591-93687610 None:intergenic 25.0%
! AAAAATATATGACAAAGCCT+AGG + chr3_1:93687592-93687611 Msa0389080:intron 25.0%
! AAAAAAAATTATTCACTGCG+GGG - chr3_1:93687776-93687795 None:intergenic 25.0%
!!! TTTTTTTGTTTTTGTTGAGG+GGG - chr3_1:93687974-93687993 None:intergenic 25.0%
!! TAGTATTAGGATTTTGTTAG+CGG - chr3_1:93688387-93688406 None:intergenic 25.0%
! ATTACAAACTATGCACAAAT+TGG - chr3_1:93688590-93688609 None:intergenic 25.0%
! GATAGAGAAACTAACATAAA+AGG - chr3_1:93688941-93688960 None:intergenic 25.0%
!! TTAAAGAAAGAAAGTTTTGC+TGG + chr3_1:93689022-93689041 Msa0389080:intron 25.0%
! CCACATAAACTTTATATGAT+TGG - chr3_1:93689249-93689268 None:intergenic 25.0%
! CCAATCATATAAAGTTTATG+TGG + chr3_1:93689246-93689265 Msa0389080:intron 25.0%
! TAAATCCCATCAAATTATGT+GGG - chr3_1:93689274-93689293 None:intergenic 25.0%
! ATAAATCCCATCAAATTATG+TGG - chr3_1:93689275-93689294 None:intergenic 25.0%
!! TGTTTTATCGTTCTCTTTAA+TGG - chr3_1:93689310-93689329 None:intergenic 25.0%
!!! AATTTTCTTACATTTGAGAC+CGG - chr3_1:93689343-93689362 None:intergenic 25.0%
! CATTCAATAAATGATGTATG+TGG + chr3_1:93689378-93689397 Msa0389080:intron 25.0%
! CATCATTGTATTATGTTATG+AGG + chr3_1:93689497-93689516 Msa0389080:intron 25.0%
!!! AGGTATTTTAAGGTGTTTAT+AGG - chr3_1:93689558-93689577 None:intergenic 25.0%
!!! ATATCTTTGAAACTTGAAAC+TGG + chr3_1:93689585-93689604 Msa0389080:intron 25.0%
! GTGTTACAAATCTATAAACA+AGG - chr3_1:93689653-93689672 None:intergenic 25.0%
!! TTTATTACATGTTTGGAGTA+AGG - chr3_1:93689959-93689978 None:intergenic 25.0%
! GATAAGGTTTATTACATGTT+TGG - chr3_1:93689966-93689985 None:intergenic 25.0%
!! GGAAATGTAATAAAAAGTGT+AGG - chr3_1:93690015-93690034 None:intergenic 25.0%
!!! CTTATTTCTATAAGCTCTTA+AGG + chr3_1:93690050-93690069 Msa0389080:intron 25.0%
! ATAATCTGTGAATCAATACT+AGG + chr3_1:93690139-93690158 Msa0389080:intron 25.0%
! ATCAATACTAGGATATGAAA+AGG + chr3_1:93690150-93690169 Msa0389080:intron 25.0%
! AAAAACCAAAGTTACCTTTA+TGG + chr3_1:93690187-93690206 Msa0389080:intron 25.0%
!! CAAGTATATCTCATTTTCAT+AGG + chr3_1:93690421-93690440 Msa0389080:intron 25.0%
! TAAAATTGATGAACTCAAAG+AGG + chr3_1:93690504-93690523 Msa0389080:CDS 25.0%
!!! ATACGTATATGATTAGCTTA+TGG + chr3_1:93690621-93690640 Msa0389080:intron 25.0%
! AAATTAATACTGCTCAGAAA+AGG - chr3_1:93690664-93690683 None:intergenic 25.0%
! TATTGTAAACTTAGCCATAT+TGG - chr3_1:93690803-93690822 None:intergenic 25.0%
! CTAAGAAAAATCCAATTAAC+TGG + chr3_1:93691484-93691503 Msa0389080:CDS 25.0%
! CAAAGTTACCTTATTGAAAA+GGG - chr3_1:93691744-93691763 None:intergenic 25.0%
! ACAAAGTTACCTTATTGAAA+AGG - chr3_1:93691745-93691764 None:intergenic 25.0%
! AATGAATGTATGATAGATTG+TGG - chr3_1:93691948-93691967 None:intergenic 25.0%
!!! TTTTTGTTGTTGTTATTTGC+AGG + chr3_1:93692063-93692082 Msa0389080:intron 25.0%
!!! TCTATTGTTCTGAAATTACT+TGG + chr3_1:93692164-93692183 Msa0389080:CDS 25.0%
!!! TAAACTATTTTTCTCTCATC+AGG + chr3_1:93692632-93692651 Msa0389080:intron 25.0%
! AAATTCTTCACTATGATCAA+TGG + chr3_1:93692740-93692759 Msa0389080:CDS 25.0%
! AATTCTTCACTATGATCAAT+GGG + chr3_1:93692741-93692760 Msa0389080:CDS 25.0%
! CATAAACAAAAATATGCTAG+TGG - chr3_1:93692844-93692863 None:intergenic 25.0%
! AAATTTATAACATCTTCGAG+TGG - chr3_1:93693000-93693019 None:intergenic 25.0%
! AATTCATATAAGTTCTTCTC+TGG - chr3_1:93693025-93693044 None:intergenic 25.0%
GATGATATCAGAGAAAAATG+AGG - chr3_1:93686869-93686888 None:intergenic 30.0%
CTATTTCCTCCTACTAAAAA+AGG - chr3_1:93687287-93687306 None:intergenic 30.0%
GTGTATGTTAAAGTTATACG+AGG + chr3_1:93687536-93687555 Msa0389080:intron 30.0%
CATTTCCTTACCGAATAATT+CGG + chr3_1:93687871-93687890 Msa0389080:intron 30.0%
TTATCTTTCTACATTCGGTT+AGG + chr3_1:93687994-93688013 Msa0389080:intron 30.0%
TATCTTTCTACATTCGGTTA+GGG + chr3_1:93687995-93688014 Msa0389080:intron 30.0%
! TTTTCCCCGATTTCAAAATA+CGG - chr3_1:93688073-93688092 None:intergenic 30.0%
GAAAAGTAGTTTAGATGAGT+CGG + chr3_1:93688292-93688311 Msa0389080:intron 30.0%
! AGTATTAGGATTTTGTTAGC+GGG - chr3_1:93688386-93688405 None:intergenic 30.0%
! CAACTCTCATTGATAGTATT+AGG - chr3_1:93688400-93688419 None:intergenic 30.0%
TTTGCATTGAAGAGAAAAGA+GGG + chr3_1:93688715-93688734 Msa0389080:CDS 30.0%
!!! AGCCTAGTGATTTTAAAACA+TGG + chr3_1:93688821-93688840 Msa0389080:CDS 30.0%
!!! GCCTAGTGATTTTAAAACAT+GGG + chr3_1:93688822-93688841 Msa0389080:CDS 30.0%
!!! TCCCATGTTTTAAAATCACT+AGG - chr3_1:93688826-93688845 None:intergenic 30.0%
!!! AGTGATTTTAAAACATGGGA+TGG + chr3_1:93688826-93688845 Msa0389080:CDS 30.0%
CATTCAATGTAAATGATGTG+TGG - chr3_1:93689416-93689435 None:intergenic 30.0%
! GAAATTTCTACATTTGAGAC+CGG + chr3_1:93689447-93689466 Msa0389080:intron 30.0%
! TGTTCATTTTCATAGACTTC+AGG - chr3_1:93689748-93689767 None:intergenic 30.0%
AGTCTATGAAAATGAACACT+CGG + chr3_1:93689750-93689769 Msa0389080:intron 30.0%
TGTCTGCAAATTTAAACAAG+AGG - chr3_1:93689834-93689853 None:intergenic 30.0%
TTTGCAGACACTTAATATAG+TGG + chr3_1:93689844-93689863 Msa0389080:intron 30.0%
! ACATTCAGTCTTATGTGATA+AGG - chr3_1:93689982-93690001 None:intergenic 30.0%
TAAGCTCTTAAGGATAACTT+AGG + chr3_1:93690060-93690079 Msa0389080:intron 30.0%
GATTATGAAGAAATGCAAAG+TGG - chr3_1:93690125-93690144 None:intergenic 30.0%
ATCAACCATAAAGGTAACTT+TGG - chr3_1:93690195-93690214 None:intergenic 30.0%
TAGAGAGAAATCAACCATAA+AGG - chr3_1:93690204-93690223 None:intergenic 30.0%
! CCTCAGATTTAAGATATGTA+TGG - chr3_1:93690381-93690400 None:intergenic 30.0%
CCATACATATCTTAAATCTG+AGG + chr3_1:93690378-93690397 Msa0389080:intron 30.0%
! ATATCTTAAATCTGAGGTGT+TGG + chr3_1:93690384-93690403 Msa0389080:intron 30.0%
!! CATAGGTTTTAATATTGTGC+AGG + chr3_1:93690438-93690457 Msa0389080:intron 30.0%
!! GTTTTAATATTGTGCAGGTA+AGG + chr3_1:93690443-93690462 Msa0389080:intron 30.0%
ATCCTCATATGTAACCAATA+TGG + chr3_1:93690786-93690805 Msa0389080:intron 30.0%
CATGTGATATGTACTAATCA+AGG + chr3_1:93691060-93691079 Msa0389080:intron 30.0%
! AGAACATTCTGCAATTTTTC+AGG + chr3_1:93691353-93691372 Msa0389080:CDS 30.0%
AGAGTTTATGCATATGATGA+TGG - chr3_1:93691389-93691408 None:intergenic 30.0%
TAATTGATCACTGATGCTTA+TGG + chr3_1:93691418-93691437 Msa0389080:intron 30.0%
! AAAATCCAATTAACTGGTTC+TGG + chr3_1:93691490-93691509 Msa0389080:CDS 30.0%
GATGAAAGACATTAAGCTTA+AGG + chr3_1:93691661-93691680 Msa0389080:CDS 30.0%
! ATGCATTAAAGCATCCTATT+TGG + chr3_1:93691684-93691703 Msa0389080:CDS 30.0%
TTTCTTCCTAAACTCCAAAT+AGG - chr3_1:93691701-93691720 None:intergenic 30.0%
!!! CTCTTTTTGTTTTTCCTTCT+TGG + chr3_1:93691850-93691869 Msa0389080:intron 30.0%
ACATTCATTAGTTGAAACAC+AGG + chr3_1:93691959-93691978 Msa0389080:CDS 30.0%
! GAAATATATTCTGATGGATC+AGG + chr3_1:93692391-93692410 Msa0389080:intron 30.0%
TGAAGAATTTCTTCAAGTGT+AGG - chr3_1:93692730-93692749 None:intergenic 30.0%
CGTAATTCAGTGAAATTCAT+CGG - chr3_1:93693092-93693111 None:intergenic 30.0%
!! ACGATACATCACTTTGATTT+TGG + chr3_1:93693109-93693128 Msa0389080:three_prime_UTR 30.0%
TTTGGCTAATTCGTTGATCA+TGG + chr3_1:93686810-93686829 Msa0389080:exon 35.0%
!! AAAAACCTGGAAGTTTTGTG+GGG - chr3_1:93686906-93686925 None:intergenic 35.0%
!! GAAAAACCTGGAAGTTTTGT+GGG - chr3_1:93686907-93686926 None:intergenic 35.0%
! AGAAAAACCTGGAAGTTTTG+TGG - chr3_1:93686908-93686927 None:intergenic 35.0%
TCATCATGCACGTACATATA+TGG + chr3_1:93686942-93686961 Msa0389080:intron 35.0%
!!! CGAAGGTATCCTTTTTTAGT+AGG + chr3_1:93687275-93687294 Msa0389080:intron 35.0%
!!! AGGTATCCTTTTTTAGTAGG+AGG + chr3_1:93687278-93687297 Msa0389080:intron 35.0%
GTAGGAGGAAATAGAGAAAA+AGG + chr3_1:93687293-93687312 Msa0389080:intron 35.0%
AGGGTAACAGGTAAGTATAT+GGG - chr3_1:93687675-93687694 None:intergenic 35.0%
TAGGGTAACAGGTAAGTATA+TGG - chr3_1:93687676-93687695 None:intergenic 35.0%
! ATTTAATTTCTCATCCCCGT+TGG - chr3_1:93687706-93687725 None:intergenic 35.0%
CTAAAATGAGCGCAAATTGT+TGG - chr3_1:93687851-93687870 None:intergenic 35.0%
AAAGGAGCAACCGAATTATT+CGG - chr3_1:93687884-93687903 None:intergenic 35.0%
TTTCCCCGATTTCAAAATAC+GGG - chr3_1:93688072-93688091 None:intergenic 35.0%
TTTAGATGAGTCGGATTTCA+TGG + chr3_1:93688301-93688320 Msa0389080:intron 35.0%
ATCCCTATTCTGTCTTTAGT+GGG - chr3_1:93688327-93688346 None:intergenic 35.0%
AATCCCTATTCTGTCTTTAG+TGG - chr3_1:93688328-93688347 None:intergenic 35.0%
CTTTGCATTGAAGAGAAAAG+AGG + chr3_1:93688714-93688733 Msa0389080:CDS 35.0%
!!! GTTTTAAAATCACTAGGCTG+AGG - chr3_1:93688820-93688839 None:intergenic 35.0%
!! GTGTTGTTAGTCTTGTTTCT+TGG - chr3_1:93689187-93689206 None:intergenic 35.0%
! GACTAACAACACATTTTTCG+AGG + chr3_1:93689195-93689214 Msa0389080:intron 35.0%
TAGCAACACACTTTGTAATC+CGG - chr3_1:93689469-93689488 None:intergenic 35.0%
! TCCAGAAAGATTTAGAGTTG+TGG + chr3_1:93689874-93689893 Msa0389080:CDS 35.0%
! CCAGAAAGATTTAGAGTTGT+GGG + chr3_1:93689875-93689894 Msa0389080:CDS 35.0%
! CAGAAAGATTTAGAGTTGTG+GGG + chr3_1:93689876-93689895 Msa0389080:CDS 35.0%
AAGAAATGCAAAGTGGAAGA+TGG - chr3_1:93690118-93690137 None:intergenic 35.0%
AGTAACATGTTCGATATTCG+TGG - chr3_1:93690269-93690288 None:intergenic 35.0%
GTAATGTGTTAGTGTCATGT+CGG + chr3_1:93690335-93690354 Msa0389080:intron 35.0%
!! CGTATATGATTAGCTTATGG+AGG + chr3_1:93690624-93690643 Msa0389080:intron 35.0%
AACTATTCCTGTAACTACTG+TGG - chr3_1:93690719-93690738 None:intergenic 35.0%
ACAGTAGTTACAGGAATAGT+TGG + chr3_1:93690718-93690737 Msa0389080:CDS 35.0%
! AGCCATATTGGTTACATATG+AGG - chr3_1:93690791-93690810 None:intergenic 35.0%
GTTAATGCAGTTCAAAGAGA+AGG + chr3_1:93690844-93690863 Msa0389080:intron 35.0%
TACGTTCAGCAGATGATTAA+TGG + chr3_1:93690881-93690900 Msa0389080:intron 35.0%
!! AGTTAATGAGTTTTGACGTC+TGG - chr3_1:93690912-93690931 None:intergenic 35.0%
AACAAAGAGACAATGATTGC+TGG + chr3_1:93691270-93691289 Msa0389080:CDS 35.0%
ATGTTATTCTTGTGAGCAAG+AGG - chr3_1:93691312-93691331 None:intergenic 35.0%
! ATTTTTCTTAGTGCACCCTT+TGG - chr3_1:93691475-93691494 None:intergenic 35.0%
! CGTTTGTCGATTGATAATTC+AGG - chr3_1:93691598-93691617 None:intergenic 35.0%
TCAATCGACAAACGCTAATA+TGG + chr3_1:93691604-93691623 Msa0389080:intron 35.0%
CCATTCTCTGTCAATAATAC+CGG - chr3_1:93691630-93691649 None:intergenic 35.0%
! AAGCATCCTATTTGGAGTTT+AGG + chr3_1:93691692-93691711 Msa0389080:CDS 35.0%
! TTCTGCTACCCTTTTCAATA+AGG + chr3_1:93691733-93691752 Msa0389080:CDS 35.0%
!!! TTTTGTTTTTCCTTCTTGGC+AGG + chr3_1:93691854-93691873 Msa0389080:intron 35.0%
!! TTTGTTTTTCCTTCTTGGCA+GGG + chr3_1:93691855-93691874 Msa0389080:intron 35.0%
ATTGAAGCACACTACTTGTT+TGG + chr3_1:93691888-93691907 Msa0389080:CDS 35.0%
TTCTTCTGTTATTGCACAGT+TGG + chr3_1:93692087-93692106 Msa0389080:CDS 35.0%
TCTTCTGTTATTGCACAGTT+GGG + chr3_1:93692088-93692107 Msa0389080:CDS 35.0%
CATGACAAAGTATAAAGGAG+TGG - chr3_1:93692133-93692152 None:intergenic 35.0%
CACTCCTTTATACTTTGTCA+TGG + chr3_1:93692131-93692150 Msa0389080:CDS 35.0%
TCAGAACAATAGACTCTTTC+TGG - chr3_1:93692157-93692176 None:intergenic 35.0%
GATTGTACTTGGTAAGATCA+AGG - chr3_1:93692195-93692214 None:intergenic 35.0%
CAAGGAGAATTGATTGTACT+TGG - chr3_1:93692206-93692225 None:intergenic 35.0%
ACTTGTAAGACTGTTTGAGA+GGG + chr3_1:93692327-93692346 Msa0389080:intron 35.0%
! ATATTCTGATGGATCAGGTA+TGG + chr3_1:93692396-93692415 Msa0389080:intron 35.0%
TTCTCAATGCAGAATTGCTA+AGG - chr3_1:93692586-93692605 None:intergenic 35.0%
!! AAAACCTGGAAGTTTTGTGG+GGG - chr3_1:93686905-93686924 None:intergenic 40.0%
AAAGACAGGAGAGAAAAACC+TGG - chr3_1:93686919-93686938 None:intergenic 40.0%
ACTTCTTCCTATAAGCTGCA+TGG + chr3_1:93687453-93687472 Msa0389080:intron 40.0%
TCTCTATCCATGCAGCTTAT+AGG - chr3_1:93687463-93687482 None:intergenic 40.0%
AGAGATATGCTACCTGAGTA+CGG + chr3_1:93687478-93687497 Msa0389080:intron 40.0%
TATATGACAAAGCCTAGGCA+TGG + chr3_1:93687597-93687616 Msa0389080:intron 40.0%
AGTATATGGGAGTAGGAGAT+GGG - chr3_1:93687662-93687681 None:intergenic 40.0%
AAGTATATGGGAGTAGGAGA+TGG - chr3_1:93687663-93687682 None:intergenic 40.0%
ACAGGTAAGTATATGGGAGT+AGG - chr3_1:93687669-93687688 None:intergenic 40.0%
AAAATTATTCACTGCGGGGA+CGG - chr3_1:93687772-93687791 None:intergenic 40.0%
AGCAACCGAATTATTCGGTA+AGG - chr3_1:93687879-93687898 None:intergenic 40.0%
TTCTACATTCGGTTAGGGTT+TGG + chr3_1:93688000-93688019 Msa0389080:intron 40.0%
TCTACATTCGGTTAGGGTTT+GGG + chr3_1:93688001-93688020 Msa0389080:intron 40.0%
CGATTTCAAAATACGGGTAC+GGG - chr3_1:93688066-93688085 None:intergenic 40.0%
CCGATTTCAAAATACGGGTA+CGG - chr3_1:93688067-93688086 None:intergenic 40.0%
!!! CCGTACCCGTATTTTGAAAT+CGG + chr3_1:93688064-93688083 Msa0389080:intron 40.0%
!!! CGTACCCGTATTTTGAAATC+GGG + chr3_1:93688065-93688084 Msa0389080:intron 40.0%
!!! GTACCCGTATTTTGAAATCG+GGG + chr3_1:93688066-93688085 Msa0389080:intron 40.0%
ATACCCAAACCCAGTCAAAT+CGG + chr3_1:93688102-93688121 Msa0389080:intron 40.0%
GAACGACACTTTGTTAGACA+AGG - chr3_1:93688187-93688206 None:intergenic 40.0%
!! GTCTAACAAAGTGTCGTTCA+TGG + chr3_1:93688188-93688207 Msa0389080:intron 40.0%
!! CCTAAGACAGAAATGGGTTT+TGG - chr3_1:93688853-93688872 None:intergenic 40.0%
CCAAAACCCATTTCTGTCTT+AGG + chr3_1:93688850-93688869 Msa0389080:CDS 40.0%
GTTGAGCCTAAGACAGAAAT+GGG - chr3_1:93688859-93688878 None:intergenic 40.0%
AGTTGAGCCTAAGACAGAAA+TGG - chr3_1:93688860-93688879 None:intergenic 40.0%
ATTTCTGTCTTAGGCTCAAC+TGG + chr3_1:93688859-93688878 Msa0389080:CDS 40.0%
! TTAGGCTCAACTGGTTCAAT+TGG + chr3_1:93688868-93688887 Msa0389080:CDS 40.0%
! AACTGGTTCAATTGGAACTC+AGG + chr3_1:93688876-93688895 Msa0389080:CDS 40.0%
GATAAAACATGTACTCCCTC+CGG + chr3_1:93689321-93689340 Msa0389080:intron 40.0%
! TTCTTACATTTGAGACCGGA+GGG - chr3_1:93689339-93689358 None:intergenic 40.0%
! TTTCTTACATTTGAGACCGG+AGG - chr3_1:93689340-93689359 None:intergenic 40.0%
GAGGTCTGTAACACTCAATA+AGG + chr3_1:93689516-93689535 Msa0389080:intron 40.0%
CCCACAACTCTAAATCTTTC+TGG - chr3_1:93689878-93689897 None:intergenic 40.0%
TGTTACTCTTCTTGCTGAAC+AGG + chr3_1:93689916-93689935 Msa0389080:CDS 40.0%
ATCAGTGCTTCATAGCTCAA+AGG - chr3_1:93690242-93690261 None:intergenic 40.0%
! TCTCTAAGAGCTACTAACTC+AGG - chr3_1:93690478-93690497 None:intergenic 40.0%
TGATGAACTCAAAGAGGCTT+TGG + chr3_1:93690510-93690529 Msa0389080:CDS 40.0%
ACAAACCTGAAATCATCCCT+GGG + chr3_1:93690545-93690564 Msa0389080:CDS 40.0%
! TTTTCTACAGCCAACAGTTG+CGG + chr3_1:93691215-93691234 Msa0389080:intron 40.0%
AAAGAGACAATGATTGCTGG+AGG + chr3_1:93691273-93691292 Msa0389080:CDS 40.0%
TTCTCTTCACAGTGTATCCA+AGG + chr3_1:93691445-93691464 Msa0389080:intron 40.0%
TGTATCCAAGGTTTGCCAAA+GGG + chr3_1:93691457-93691476 Msa0389080:CDS 40.0%
!! ATCCAATTAACTGGTTCTGG+AGG + chr3_1:93691493-93691512 Msa0389080:CDS 40.0%
CCGGTATTATTGACAGAGAA+TGG + chr3_1:93691627-93691646 Msa0389080:intron 40.0%
ATGTCTTTCATCTTCTCAGC+AGG - chr3_1:93691653-93691672 None:intergenic 40.0%
CTGGCCATGACAAAGTATAA+AGG - chr3_1:93692138-93692157 None:intergenic 40.0%
CACTTGTAAGACTGTTTGAG+AGG + chr3_1:93692326-93692345 Msa0389080:intron 40.0%
CTTGTAAGACTGTTTGAGAG+GGG + chr3_1:93692328-93692347 Msa0389080:intron 40.0%
GATGGAAACTTCTTAGTGTC+TGG - chr3_1:93692441-93692460 None:intergenic 40.0%
GCATAGCAAAGATTCACTGA+TGG - chr3_1:93692459-93692478 None:intergenic 40.0%
TTGAATCTCATGTAGCTGTG+TGG + chr3_1:93692804-93692823 Msa0389080:exon 40.0%
CGAGTGGAAGAACTACATAT+TGG - chr3_1:93692984-93693003 None:intergenic 40.0%
! GTTTTGTGGGGGTGATAACT+GGG - chr3_1:93686894-93686913 None:intergenic 45.0%
!! AGTTTTGTGGGGGTGATAAC+TGG - chr3_1:93686895-93686914 None:intergenic 45.0%
GTGCATGATGAGACAAAGAC+AGG - chr3_1:93686933-93686952 None:intergenic 45.0%
TGCATCTTGTATCCGTACTC+AGG - chr3_1:93687493-93687512 None:intergenic 45.0%
GTATATGGGAGTAGGAGATG+GGG - chr3_1:93687661-93687680 None:intergenic 45.0%
TTGGATATGGGTAGGGTAAC+AGG - chr3_1:93687687-93687706 None:intergenic 45.0%
GTTACCCTACCCATATCCAA+CGG + chr3_1:93687687-93687706 Msa0389080:intron 45.0%
TTACCCTACCCATATCCAAC+GGG + chr3_1:93687688-93687707 Msa0389080:intron 45.0%
TTCTCATCCCCGTTGGATAT+GGG - chr3_1:93687699-93687718 None:intergenic 45.0%
TTTCTCATCCCCGTTGGATA+TGG - chr3_1:93687700-93687719 None:intergenic 45.0%
AAATTATTCACTGCGGGGAC+GGG - chr3_1:93687771-93687790 None:intergenic 45.0%
ATTCGGTTAGGGTTTGGGTA+TGG + chr3_1:93688006-93688025 Msa0389080:intron 45.0%
TTCGGTTAGGGTTTGGGTAT+GGG + chr3_1:93688007-93688026 Msa0389080:intron 45.0%
TTAGGGTTTGGGTATGGGTT+CGG + chr3_1:93688012-93688031 Msa0389080:intron 45.0%
TTCAAAATACGGGTACGGGA+CGG - chr3_1:93688062-93688081 None:intergenic 45.0%
TACCCAAACCCAGTCAAATC+GGG + chr3_1:93688103-93688122 Msa0389080:intron 45.0%
TGGCCCACTAAAGACAGAAT+AGG + chr3_1:93688321-93688340 Msa0389080:intron 45.0%
GGCCCACTAAAGACAGAATA+GGG + chr3_1:93688322-93688341 Msa0389080:intron 45.0%
TGGGGCCCACATAATTTGAT+GGG + chr3_1:93689266-93689285 Msa0389080:intron 45.0%
CACAAACCTGAAATCATCCC+TGG + chr3_1:93690544-93690563 Msa0389080:CDS 45.0%
CAAACCTGAAATCATCCCTG+GGG + chr3_1:93690546-93690565 Msa0389080:CDS 45.0%
ACAGGAATAGTTGGTTGTGC+AGG + chr3_1:93690727-93690746 Msa0389080:CDS 45.0%
AGTGACTACGTACACGTTCT+TGG - chr3_1:93690947-93690966 None:intergenic 45.0%
! GCAGAATGTTCTGAATCAGC+AGG - chr3_1:93691345-93691364 None:intergenic 45.0%
GTGTATCCAAGGTTTGCCAA+AGG + chr3_1:93691456-93691475 Msa0389080:intron 45.0%
CACCTCCAGAACCAGTTAAT+TGG - chr3_1:93691498-93691517 None:intergenic 45.0%
TCGACAAACGCTAATATGGC+CGG + chr3_1:93691608-93691627 Msa0389080:intron 45.0%
ACTTCTAAACCCTGCCAAGA+AGG - chr3_1:93691867-93691886 None:intergenic 45.0%
AGTTGGGATTACCTGACATG+CGG + chr3_1:93692104-93692123 Msa0389080:CDS 45.0%
TACTTGGTAAGATCAAGGCG+AGG - chr3_1:93692190-93692209 None:intergenic 45.0%
! GTGAATCTTTGCTATGCTGC+CGG + chr3_1:93692462-93692481 Msa0389080:CDS 45.0%
GTTTGCAGCACTAAGAACTC+CGG - chr3_1:93692508-93692527 None:intergenic 45.0%
GTAGCTGTGTGGTCAATTGT+TGG + chr3_1:93692815-93692834 Msa0389080:three_prime_UTR 45.0%
!!! AATTATTTTATTGAATTAAA+TGG + chr3_1:93687175-93687194 Msa0389080:intron 5.0%
!!! TATATTGTATATATTTTTAA+GGG - chr3_1:93688561-93688580 None:intergenic 5.0%
!!! TTATATTGTATATATTTTTA+AGG - chr3_1:93688562-93688581 None:intergenic 5.0%
ATGAGGGCTTCACTTGAGCT+GGG - chr3_1:93686852-93686871 None:intergenic 50.0%
AATGAGGGCTTCACTTGAGC+TGG - chr3_1:93686853-93686872 None:intergenic 50.0%
ATCACCCCCACAAAACTTCC+AGG + chr3_1:93686898-93686917 Msa0389080:CDS 50.0%
ACAAAGCCTAGGCATGGCAA+TGG + chr3_1:93687603-93687622 Msa0389080:intron 50.0%
CAAAGCCTAGGCATGGCAAT+GGG + chr3_1:93687604-93687623 Msa0389080:intron 50.0%
AAAGCCTAGGCATGGCAATG+GGG + chr3_1:93687605-93687624 Msa0389080:intron 50.0%
TACCCTACCCATATCCAACG+GGG + chr3_1:93687689-93687708 Msa0389080:intron 50.0%
ATCCCCGTTGGATATGGGTA+GGG - chr3_1:93687694-93687713 None:intergenic 50.0%
AATTATTCACTGCGGGGACG+GGG - chr3_1:93687770-93687789 None:intergenic 50.0%
TTTGGGTATGGGTTCGGAGT+GGG + chr3_1:93688018-93688037 Msa0389080:intron 50.0%
TCAAAATACGGGTACGGGAC+GGG - chr3_1:93688061-93688080 None:intergenic 50.0%
ACCCAAACCCAGTCAAATCG+GGG + chr3_1:93688104-93688123 Msa0389080:intron 50.0%
! TCCCCGATTTGACTGGGTTT+GGG - chr3_1:93688108-93688127 None:intergenic 50.0%
! TTCCCCGATTTGACTGGGTT+TGG - chr3_1:93688109-93688128 None:intergenic 50.0%
!! GGGTTTTCCCCGATTTGACT+GGG - chr3_1:93688114-93688133 None:intergenic 50.0%
TCGGGGAAAACCCGTCAAAT+CGG + chr3_1:93688121-93688140 Msa0389080:intron 50.0%
AAAACCCGTCAAATCGGGGT+TGG + chr3_1:93688127-93688146 Msa0389080:intron 50.0%
! CAAACCAACCCCGATTTGAC+GGG - chr3_1:93688134-93688153 None:intergenic 50.0%
! CCAAACCAACCCCGATTTGA+CGG - chr3_1:93688135-93688154 None:intergenic 50.0%
!! CGTCAAATCGGGGTTGGTTT+GGG + chr3_1:93688133-93688152 Msa0389080:intron 50.0%
GTGGGGCCCACATAATTTGA+TGG + chr3_1:93689265-93689284 Msa0389080:intron 50.0%
TGTCGGACACTGACACATGT+TGG + chr3_1:93690352-93690371 Msa0389080:intron 50.0%
!! CTGAGGTGTTGGTACTACGT+CGG + chr3_1:93690395-93690414 Msa0389080:intron 50.0%
! GAACTCAAAGAGGCTTTGGC+TGG + chr3_1:93690514-93690533 Msa0389080:CDS 50.0%
TAACTACTGTGGCCGCATCA+GGG - chr3_1:93690708-93690727 None:intergenic 50.0%
AGCACTAAGAACTCCGGTCA+TGG - chr3_1:93692502-93692521 None:intergenic 50.0%
TGGGCAAGACAATATGCTGC+TGG + chr3_1:93692760-93692779 Msa0389080:CDS 50.0%
TGAGGGCTTCACTTGAGCTG+GGG - chr3_1:93686851-93686870 None:intergenic 55.0%
TGGGAGTAGGAGATGGGGAT+GGG - chr3_1:93687656-93687675 None:intergenic 55.0%
ATGGGAGTAGGAGATGGGGA+TGG - chr3_1:93687657-93687676 None:intergenic 55.0%
CATCCCCGTTGGATATGGGT+AGG - chr3_1:93687695-93687714 None:intergenic 55.0%
AATCTCATCCCCGTCCCCAA+TGG + chr3_1:93687723-93687742 Msa0389080:intron 55.0%
ATCTCATCCCCGTCCCCAAT+GGG + chr3_1:93687724-93687743 Msa0389080:intron 55.0%
ATACCCGAACCCATTGGGGA+CGG - chr3_1:93687736-93687755 None:intergenic 55.0%
GGGAATACCCGAACCCATTG+GGG - chr3_1:93687740-93687759 None:intergenic 55.0%
CGGGAATACCCGAACCCATT+GGG - chr3_1:93687741-93687760 None:intergenic 55.0%
GTTTGGGTATGGGTTCGGAG+TGG + chr3_1:93688017-93688036 Msa0389080:intron 55.0%
!! CGGGTTTTCCCCGATTTGAC+TGG - chr3_1:93688115-93688134 None:intergenic 55.0%
CGGGGAAAACCCGTCAAATC+GGG + chr3_1:93688122-93688141 Msa0389080:intron 55.0%
GGGGAAAACCCGTCAAATCG+GGG + chr3_1:93688123-93688142 Msa0389080:intron 55.0%
!! CCGTCAAATCGGGGTTGGTT+TGG + chr3_1:93688132-93688151 Msa0389080:intron 55.0%
!! CAAATCGGGGTTGGTTTGGG+CGG + chr3_1:93688136-93688155 Msa0389080:intron 55.0%
!! AAATCGGGGTTGGTTTGGGC+GGG + chr3_1:93688137-93688156 Msa0389080:intron 55.0%
GCAACAAAACCCGTGCCCAT+GGG - chr3_1:93688165-93688184 None:intergenic 55.0%
ATAGCTGTTCCTGGCCAAGC+TGG - chr3_1:93688796-93688815 None:intergenic 55.0%
GGCTGAGGAATAGCTGTTCC+TGG - chr3_1:93688805-93688824 None:intergenic 55.0%
TGCTCCCCAGGGATGATTTC+AGG - chr3_1:93690553-93690572 None:intergenic 55.0%
GAAATCATCCCTGGGGAGCA+AGG + chr3_1:93690553-93690572 Msa0389080:CDS 55.0%
CAATGACTCCTTGCTCCCCA+GGG - chr3_1:93690564-93690583 None:intergenic 55.0%
TCAATGACTCCTTGCTCCCC+AGG - chr3_1:93690565-93690584 None:intergenic 55.0%
TGGGGAGCAAGGAGTCATTG+AGG + chr3_1:93690564-93690583 Msa0389080:CDS 55.0%
GTAACTACTGTGGCCGCATC+AGG - chr3_1:93690709-93690728 None:intergenic 55.0%
GATGCGGCCACAGTAGTTAC+AGG + chr3_1:93690709-93690728 Msa0389080:CDS 55.0%
GCTTCAATCGCCGCAACTGT+TGG - chr3_1:93691228-93691247 None:intergenic 55.0%
ACAGTTGCGGCGATTGAAGC+AGG + chr3_1:93691228-93691247 Msa0389080:CDS 55.0%
CAGTTGCGGCGATTGAAGCA+GGG + chr3_1:93691229-93691248 Msa0389080:CDS 55.0%
GTGCACCCTTTGGCAAACCT+TGG - chr3_1:93691465-93691484 None:intergenic 55.0%
!! CTGGTTCTGGAGGTGCTTTC+AGG + chr3_1:93691503-93691522 Msa0389080:CDS 55.0%
GGCTTCACTTGAGCTGGGGA+GGG - chr3_1:93686847-93686866 None:intergenic 60.0%
CCTAGGCATGGCAATGGGGT+GGG + chr3_1:93687609-93687628 Msa0389080:intron 60.0%
CTAGGCATGGCAATGGGGTG+GGG + chr3_1:93687610-93687629 Msa0389080:intron 60.0%
GTAGGAGATGGGGATGGGGA+AGG - chr3_1:93687651-93687670 None:intergenic 60.0%
GGGAGTAGGAGATGGGGATG+GGG - chr3_1:93687655-93687674 None:intergenic 60.0%
! ATCCCCGTCCCCAATGGGTT+CGG + chr3_1:93687729-93687748 Msa0389080:intron 60.0%
TACCCGAACCCATTGGGGAC+GGG - chr3_1:93687735-93687754 None:intergenic 60.0%
GCGGGAATACCCGAACCCAT+TGG - chr3_1:93687742-93687761 None:intergenic 60.0%
!! TTGGTTTGGGCGGGTACCCA+TGG + chr3_1:93688146-93688165 Msa0389080:intron 60.0%
! TGGTTTGGGCGGGTACCCAT+GGG + chr3_1:93688147-93688166 Msa0389080:intron 60.0%
GGCAACAAAACCCGTGCCCA+TGG - chr3_1:93688166-93688185 None:intergenic 60.0%
CACACTCACCACCACCAGCT+TGG + chr3_1:93688779-93688798 Msa0389080:CDS 60.0%
AGAGTTGTGGGGCTTGCAGC+TGG + chr3_1:93689887-93689906 Msa0389080:CDS 60.0%
GGTTGCTCGTCACCCTGATG+CGG + chr3_1:93690693-93690712 Msa0389080:intron 60.0%
AGGAGTGGCAACCGCATGTC+AGG - chr3_1:93692118-93692137 None:intergenic 60.0%
GGGCTTCACTTGAGCTGGGG+AGG - chr3_1:93686848-93686867 None:intergenic 65.0%
GCCTAGGCATGGCAATGGGG+TGG + chr3_1:93687608-93687627 Msa0389080:intron 65.0%
CCCACCCCATTGCCATGCCT+AGG - chr3_1:93687612-93687631 None:intergenic 65.0%
CATGGCAATGGGGTGGGGTG+CGG + chr3_1:93687615-93687634 Msa0389080:intron 65.0%
! TCCCCGTCCCCAATGGGTTC+GGG + chr3_1:93687730-93687749 Msa0389080:intron 65.0%
ACCCGAACCCATTGGGGACG+GGG - chr3_1:93687734-93687753 None:intergenic 65.0%
TTCACTGCGGGGACGGGGAT+GGG - chr3_1:93687765-93687784 None:intergenic 65.0%
ATTCACTGCGGGGACGGGGA+TGG - chr3_1:93687766-93687785 None:intergenic 65.0%
TCACCACCACCAGCTTGGCC+AGG + chr3_1:93688784-93688803 Msa0389080:CDS 65.0%
GTTCCTGGCCAAGCTGGTGG+TGG - chr3_1:93688790-93688809 None:intergenic 65.0%
GCTGTTCCTGGCCAAGCTGG+TGG - chr3_1:93688793-93688812 None:intergenic 65.0%
TGCTATGCTGCCGGACGTGC+TGG + chr3_1:93692471-93692490 Msa0389080:CDS 65.0%
TATGCTGCCGGACGTGCTGG+AGG + chr3_1:93692474-93692493 Msa0389080:CDS 65.0%
CATGGTGCCTCCAGCACGTC+CGG - chr3_1:93692484-93692503 None:intergenic 65.0%
!! CGTGCTGGAGGCACCATGAC+CGG + chr3_1:93692486-93692505 Msa0389080:CDS 65.0%
GCAATGGGGTGGGGTGCGGA+CGG + chr3_1:93687619-93687638 Msa0389080:intron 70.0%
CAATGGGGTGGGGTGCGGAC+GGG + chr3_1:93687620-93687639 Msa0389080:intron 70.0%
TCACTGCGGGGACGGGGATG+GGG - chr3_1:93687764-93687783 None:intergenic 70.0%
CGGGTACGGGACGGGTAACG+AGG - chr3_1:93688053-93688072 None:intergenic 70.0%
TGGGCGGGTACCCATGGGCA+CGG + chr3_1:93688152-93688171 Msa0389080:intron 70.0%
GGGCGGGTACCCATGGGCAC+GGG + chr3_1:93688153-93688172 Msa0389080:intron 75.0%
! TGCGGGGACGGGGATGGGGC+GGG - chr3_1:93687760-93687779 None:intergenic 80.0%
! CTGCGGGGACGGGGATGGGG+CGG - chr3_1:93687761-93687780 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 93686751 93693207 93686751 ID=Msa0389080;Name=Msa0389080
chr3_1 mRNA 93686751 93693207 93686751 ID=Msa0389080-mRNA-1;Parent=Msa0389080;Name=Msa0389080-mRNA-1;_AED=0.18;_eAED=0.18;_QI=78|1|1|1|1|1|12|400|470
chr3_1 exon 93686751 93686919 93686751 ID=Msa0389080-mRNA-1:exon:26556;Parent=Msa0389080-mRNA-1
chr3_1 exon 93688710 93688897 93688710 ID=Msa0389080-mRNA-1:exon:26557;Parent=Msa0389080-mRNA-1
chr3_1 exon 93689851 93689937 93689851 ID=Msa0389080-mRNA-1:exon:26558;Parent=Msa0389080-mRNA-1
chr3_1 exon 93690460 93690585 93690460 ID=Msa0389080-mRNA-1:exon:26559;Parent=Msa0389080-mRNA-1
chr3_1 exon 93690694 93690756 93690694 ID=Msa0389080-mRNA-1:exon:26560;Parent=Msa0389080-mRNA-1
chr3_1 exon 93691225 93691374 93691225 ID=Msa0389080-mRNA-1:exon:26561;Parent=Msa0389080-mRNA-1
chr3_1 exon 93691457 93691524 93691457 ID=Msa0389080-mRNA-1:exon:26562;Parent=Msa0389080-mRNA-1
chr3_1 exon 93691643 93691754 93691643 ID=Msa0389080-mRNA-1:exon:26563;Parent=Msa0389080-mRNA-1
chr3_1 exon 93691876 93691980 93691876 ID=Msa0389080-mRNA-1:exon:26564;Parent=Msa0389080-mRNA-1
chr3_1 exon 93692085 93692206 93692085 ID=Msa0389080-mRNA-1:exon:26565;Parent=Msa0389080-mRNA-1
chr3_1 exon 93692413 93692559 93692413 ID=Msa0389080-mRNA-1:exon:26566;Parent=Msa0389080-mRNA-1
chr3_1 exon 93692654 93693207 93692654 ID=Msa0389080-mRNA-1:exon:26567;Parent=Msa0389080-mRNA-1
chr3_1 five_prime_UTR 93686751 93686828 93686751 ID=Msa0389080-mRNA-1:five_prime_utr;Parent=Msa0389080-mRNA-1
chr3_1 CDS 93686829 93686919 93686829 ID=Msa0389080-mRNA-1:cds;Parent=Msa0389080-mRNA-1
chr3_1 CDS 93688710 93688897 93688710 ID=Msa0389080-mRNA-1:cds;Parent=Msa0389080-mRNA-1
chr3_1 CDS 93689851 93689937 93689851 ID=Msa0389080-mRNA-1:cds;Parent=Msa0389080-mRNA-1
chr3_1 CDS 93690460 93690585 93690460 ID=Msa0389080-mRNA-1:cds;Parent=Msa0389080-mRNA-1
chr3_1 CDS 93690694 93690756 93690694 ID=Msa0389080-mRNA-1:cds;Parent=Msa0389080-mRNA-1
chr3_1 CDS 93691225 93691374 93691225 ID=Msa0389080-mRNA-1:cds;Parent=Msa0389080-mRNA-1
chr3_1 CDS 93691457 93691524 93691457 ID=Msa0389080-mRNA-1:cds;Parent=Msa0389080-mRNA-1
chr3_1 CDS 93691643 93691754 93691643 ID=Msa0389080-mRNA-1:cds;Parent=Msa0389080-mRNA-1
chr3_1 CDS 93691876 93691980 93691876 ID=Msa0389080-mRNA-1:cds;Parent=Msa0389080-mRNA-1
chr3_1 CDS 93692085 93692206 93692085 ID=Msa0389080-mRNA-1:cds;Parent=Msa0389080-mRNA-1
chr3_1 CDS 93692413 93692559 93692413 ID=Msa0389080-mRNA-1:cds;Parent=Msa0389080-mRNA-1
chr3_1 CDS 93692654 93692807 93692654 ID=Msa0389080-mRNA-1:cds;Parent=Msa0389080-mRNA-1
chr3_1 three_prime_UTR 93692808 93693207 93692808 ID=Msa0389080-mRNA-1:three_prime_utr;Parent=Msa0389080-mRNA-1
Gene Sequence

>Msa0389080

ATGGCTTTGAATTTGCCCTCCCCAGCTCAAGTGAAGCCCTCATTTTTCTCTGATATCATCAACCCAGTTATCACCCCCACAAAACTTCCAGGTAGCTTTGCATTGAAGAGAAAAGAGGGTGACACAAAAGTAGTAAAGAGAAGAGTTTATTGCTCTGCAGCACACTCACCACCACCAGCTTGGCCAGGAACAGCTATTCCTCAGCCTAGTGATTTTAAAACATGGGATGGACCAAAACCCATTTCTGTCTTAGGCTCAACTGGTTCAATTGGAACTCAGACACTTAATATAGTGGCAGAGTTTCCAGAAAGATTTAGAGTTGTGGGGCTTGCAGCTGGTTCAAATGTTACTCTTCTTGCTGAACAGGTAAGGATATTTAAGCCTGAGTTAGTAGCTCTTAGAGACGAGTCTAAAATTGATGAACTCAAAGAGGCTTTGGCTGGTATTGATCACAAACCTGAAATCATCCCTGGGGAGCAAGGAGTCATTGAGGTTGCTCGTCACCCTGATGCGGCCACAGTAGTTACAGGAATAGTTGGTTGTGCAGGATTGAAGCCAACAGTTGCGGCGATTGAAGCAGGGAAAGACATAGCATTAGCTAACAAAGAGACAATGATTGCTGGAGGCGCTTTTGTTCTTCCTCTTGCTCACAAGAATAACATCAAAATTCTTCCTGCTGATTCAGAACATTCTGCAATTTTTCAGTGTATCCAAGGTTTGCCAAAGGGTGCACTAAGAAAAATCCAATTAACTGGTTCTGGAGGTGCTTTCAGAGAATGGCCTGCTGAGAAGATGAAAGACATTAAGCTTAAGGATGCATTAAAGCATCCTATTTGGAGTTTAGGAAGAAAGATAACTATAGATTCTGCTACCCTTTTCAATAAGGGTTTAGAAGTAATTGAAGCACACTACTTGTTTGGAGCAGAATATGATGATATTGAGATTGTTATTCATCCACAATCTATCATACATTCATTAGTTGAAACACAGGATTCTTCTGTTATTGCACAGTTGGGATTACCTGACATGCGGTTGCCACTCCTTTATACTTTGTCATGGCCAGAAAGAGTCTATTGTTCTGAAATTACTTGGCCTCGCCTTGATCTTACCAAGTATGGTTCTCTAACATTTCAAGCTCCAGACACTAAGAAGTTTCCATCAGTGAATCTTTGCTATGCTGCCGGACGTGCTGGAGGCACCATGACCGGAGTTCTTAGTGCTGCAAACGAGATAGCTGTCGAACTGTTTGTTGCAGAAAAGATTAGCTATCTAGATATTTTCAAGATTGCAGAGCTAACATGTAATGAACATCAAAAAGAATTGGTAACATCTCCTACACTTGAAGAAATTCTTCACTATGATCAATGGGCAAGACAATATGCTGCTGGTTTGCAAAAAGCTTTAAGTGTTTGA

Protein sequence

>Msa0389080

MALNLPSPAQVKPSFFSDIINPVITPTKLPGSFALKRKEGDTKVVKRRVYCSAAHSPPPAWPGTAIPQPSDFKTWDGPKPISVLGSTGSIGTQTLNIVAEFPERFRVVGLAAGSNVTLLAEQVRIFKPELVALRDESKIDELKEALAGIDHKPEIIPGEQGVIEVARHPDAATVVTGIVGCAGLKPTVAAIEAGKDIALANKETMIAGGAFVLPLAHKNNIKILPADSEHSAIFQCIQGLPKGALRKIQLTGSGGAFREWPAEKMKDIKLKDALKHPIWSLGRKITIDSATLFNKGLEVIEAHYLFGAEYDDIEIVIHPQSIIHSLVETQDSSVIAQLGLPDMRLPLLYTLSWPERVYCSEITWPRLDLTKYGSLTFQAPDTKKFPSVNLCYAAGRAGGTMTGVLSAANEIAVELFVAEKISYLDIFKIAELTCNEHQKELVTSPTLEEILHYDQWARQYAAGLQKALSV*