AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1181370


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1181370 MtrunA17_Chr8g0339281 93.404 470 4 2 1 443 1 470 0.0 874
Msa1181370 MtrunA17_Chr4g0059081 69.639 471 112 5 1 442 1 469 0.0 657
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1181370 AT5G62790.1 68.936 470 110 6 1 438 2 467 0.0 627
Msa1181370 AT5G62790.2 65.988 491 110 6 1 438 1 487 0.0 619

Find 105 sgRNAs with CRISPR-Local

Find 363 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGGTTCTGGAGGTGCTTTC+AGG 0.116417 8_1:+15753755 Msa1181370:CDS
TCAGTACAATAGACTCTTTC+TGG 0.133082 8_1:-15754412 None:intergenic
TGCTCCTCAGGGATGATTTC+AGG 0.141827 8_1:-15752802 None:intergenic
GCAATATATATGTGTTAAAA+AGG 0.179844 8_1:+15755155 Msa1181370:three_prime_UTR
CCCACAACTCTAAATCTTTC+TGG 0.190443 8_1:-15752127 None:intergenic
CACCTCCAGAACCAGTTAAT+TGG 0.231332 8_1:-15753747 None:intergenic
AAAGCATCCCATTTGGAGTT+TGG 0.266732 8_1:+15753943 Msa1181370:CDS
AAAATCCAATTAACTGGTTC+TGG 0.278312 8_1:+15753742 Msa1181370:CDS
ATTGAAGCACATTACTTGTT+TGG 0.318541 8_1:+15754146 Msa1181370:CDS
GTAACTACTGTGGCCGCATC+AGG 0.322322 8_1:-15752958 None:intergenic
CCAAAACCCATTTCTGTCTT+AGG 0.325179 8_1:+15751658 Msa1181370:CDS
TGTTACTCTTCTTGCTGAAC+AGG 0.340001 8_1:+15752168 Msa1181370:CDS
CCTAAGACAGAAATGGGTTT+TGG 0.343835 8_1:-15751658 None:intergenic
CAAGTGCATGTTTAGATTGA+TGG 0.353556 8_1:+15755330 Msa1181370:three_prime_UTR
CTTTCTTCCCAAACTCCAAA+TGG 0.355261 8_1:-15753951 None:intergenic
AAGCATCCCATTTGGAGTTT+GGG 0.358662 8_1:+15753944 Msa1181370:CDS
TGCTATGCTGCCGGACGTGC+TGG 0.364387 8_1:+15754727 Msa1181370:CDS
TGATGAACTCAAAGAGGCTT+TGG 0.369480 8_1:+15752762 Msa1181370:CDS
ATTTCTGTCTTAGGCTCAAC+TGG 0.373291 8_1:+15751667 Msa1181370:CDS
GATGAAAGACATTAAGCTTA+AGG 0.385860 8_1:+15753913 Msa1181370:CDS
TTAGGCTCAACTGGTTCAAT+TGG 0.387627 8_1:+15751676 Msa1181370:CDS
AGAGTTGTGGGGCTTGCAGC+TGG 0.407476 8_1:+15752139 Msa1181370:CDS
TCTTCTGTTATTGCACAGTT+GGG 0.407522 8_1:+15754346 Msa1181370:CDS
GGCTGAGGAATAGCTGTTCC+TGG 0.408782 8_1:-15751610 None:intergenic
ACTAAGTTACCTTATTGAAA+AGG 0.410635 8_1:-15753994 None:intergenic
CCAGAAAGATTTAGAGTTGT+GGG 0.417586 8_1:+15752127 Msa1181370:CDS
TTCTTCTGTTATTGCACAGT+TGG 0.418400 8_1:+15754345 Msa1181370:CDS
CTGGCCATGACAAAGTATAA+AGG 0.421069 8_1:-15754393 None:intergenic
ATGCATTAAAGCATCCCATT+TGG 0.422759 8_1:+15753936 Msa1181370:CDS
TCAATGACTCCTTGCTCCTC+AGG 0.422868 8_1:-15752814 None:intergenic
TTTGTTTGTATATAATGTAA+AGG 0.425025 8_1:+15755129 Msa1181370:three_prime_UTR
AATGAGGGCTTCACTTGAGC+TGG 0.425141 8_1:-15748635 None:intergenic
AGTTGGTTGTGCAGGATTGA+AGG 0.426456 8_1:+15752987 Msa1181370:CDS
GATGCGGCCACAGTAGTTAC+AGG 0.427903 8_1:+15752961 Msa1181370:CDS
TTGTTTGTATATAATGTAAA+GGG 0.438252 8_1:+15755130 Msa1181370:three_prime_UTR
CTTGTTTGTTCAAATTCATC+CGG 0.440937 8_1:-15755311 None:intergenic
AAATTCTTCACTATGATCAA+TGG 0.443929 8_1:+15754996 Msa1181370:CDS
TTTGCAGACACTTAATATAG+TGG 0.444020 8_1:+15752096 Msa1181370:intron
AGTTGAGCCTAAGACAGAAA+TGG 0.444065 8_1:-15751665 None:intergenic
ACAGTTGCGGCGATTGAAGC+AGG 0.447063 8_1:+15753480 Msa1181370:CDS
CTAAGTTACCTTATTGAAAA+GGG 0.447449 8_1:-15753993 None:intergenic
TTTGGCTAATTCGCTGATCA+TGG 0.448411 8_1:+15748595 Msa1181370:exon
CATGGTGCCTCCAGCACGTC+CGG 0.450053 8_1:-15754737 None:intergenic
AGGAGTGGCAACCGCATGTC+AGG 0.450100 8_1:-15754373 None:intergenic
AACAAAGAGACAATGATTGC+TGG 0.450546 8_1:+15753522 Msa1181370:CDS
ACAGGAATAGTTGGTTGTGC+AGG 0.452774 8_1:+15752979 Msa1181370:CDS
GCTTCAATCGCCGCAACTGT+TGG 0.459796 8_1:-15753477 None:intergenic
AATTCTTCACTATGATCAAT+GGG 0.464591 8_1:+15754997 Msa1181370:CDS
GTTGAGCCTAAGACAGAAAT+GGG 0.465989 8_1:-15751664 None:intergenic
ACAGTAGTTACAGGAATAGT+TGG 0.466428 8_1:+15752970 Msa1181370:CDS
GGGCTTCACTTGAGCTGGGG+AGG 0.469449 8_1:-15748630 None:intergenic
TTCGACAGCTATCTCGTTTG+CGG 0.472921 8_1:-15754776 None:intergenic
AACTGGTTCAATTGGAACTC+AGG 0.475794 8_1:+15751684 Msa1181370:CDS
GTTCCTGGCCAAGCTGGTGG+TGG 0.483247 8_1:-15751595 None:intergenic
GGCTTCACTTGAGCTGGGGA+GGG 0.484400 8_1:-15748629 None:intergenic
TTTCTTCCCAAACTCCAAAT+GGG 0.484795 8_1:-15753950 None:intergenic
CGAGTGGAAGAACTACATAT+TGG 0.486387 8_1:-15755242 None:intergenic
GTGCACCCTTTGGCAAACCT+TGG 0.492039 8_1:-15753714 None:intergenic
TTCTCTTCACAGTGTATCCA+AGG 0.495462 8_1:+15753697 Msa1181370:intron
CACTCCTTTATACTTTGTCA+TGG 0.504667 8_1:+15754389 Msa1181370:CDS
TCACCACCACCAGCTTGGCC+AGG 0.507652 8_1:+15751592 Msa1181370:CDS
ATGAGGGCTTCACTTGAGCT+GGG 0.509509 8_1:-15748634 None:intergenic
CGTGCTGGAGGCACCATGAC+CGG 0.512996 8_1:+15754742 Msa1181370:CDS
CACACTCACCACCACCAGCT+TGG 0.516652 8_1:+15751587 Msa1181370:CDS
AATTATATGAAATTGTTGAC+CGG 0.523112 8_1:+15755292 Msa1181370:three_prime_UTR
TCCAGAAAGATTTAGAGTTG+TGG 0.529260 8_1:+15752126 Msa1181370:CDS
TGAAGAATTTCTTCAAGTGT+AGG 0.529338 8_1:-15754983 None:intergenic
CTTTGCATTGAAGAGAAAAG+AGG 0.531645 8_1:+15751522 Msa1181370:CDS
GTGAATCTTTGCTATGCTGC+CGG 0.539876 8_1:+15754718 Msa1181370:CDS
GAACTCAAAGAGGCTTTGGC+TGG 0.544181 8_1:+15752766 Msa1181370:CDS
TGTATCCAAGGTTTGCCAAA+GGG 0.545399 8_1:+15753709 Msa1181370:CDS
GCAGAATGTTCTGAATCAGC+AGG 0.549134 8_1:-15753594 None:intergenic
TAAAATTGATGAACTCAAAG+AGG 0.559890 8_1:+15752756 Msa1181370:CDS
ATAGCTGTTCCTGGCCAAGC+TGG 0.560525 8_1:-15751601 None:intergenic
CAATGACTCCTTGCTCCTCA+GGG 0.565227 8_1:-15752813 None:intergenic
GGCACTAAGAACTCCGGTCA+TGG 0.575421 8_1:-15754755 None:intergenic
TTTGCATTGAAGAGAAAAGA+GGG 0.583030 8_1:+15751523 Msa1181370:CDS
TATGCTGCCGGACGTGCTGG+AGG 0.583393 8_1:+15754730 Msa1181370:CDS
ATCCAATTAACTGGTTCTGG+AGG 0.587262 8_1:+15753745 Msa1181370:CDS
TCTCTAAGAGCTACTAACTC+AGG 0.587556 8_1:-15752727 None:intergenic
CATAAACAAAATATGCTAGT+GGG 0.587841 8_1:-15755097 None:intergenic
AATGAATGTATGATAGATTG+TGG 0.591032 8_1:-15754203 None:intergenic
GCATAGCAAAGATTCACTGA+TGG 0.591366 8_1:-15754712 None:intergenic
TGGGCAAGACAATATGCTGC+CGG 0.594132 8_1:+15755016 Msa1181370:CDS
ACATAAACAAAATATGCTAG+TGG 0.594310 8_1:-15755098 None:intergenic
GCTGTTCCTGGCCAAGCTGG+TGG 0.597035 8_1:-15751598 None:intergenic
CAGAAAGATTTAGAGTTGTG+GGG 0.597402 8_1:+15752128 Msa1181370:CDS
ACATTCATTAGTTGAAACAC+AGG 0.602985 8_1:+15754217 Msa1181370:CDS
TAACTACTGTGGCCGCATCA+GGG 0.604825 8_1:-15752957 None:intergenic
GTGTATCCAAGGTTTGCCAA+AGG 0.606096 8_1:+15753708 Msa1181370:intron
GAAATCATCCCTGAGGAGCA+AGG 0.612424 8_1:+15752805 Msa1181370:CDS
GGTTGCTCGTCACCCTGATG+CGG 0.616790 8_1:+15752945 Msa1181370:intron
TGTTGTCAGTGTTCATCGAG+TGG 0.629248 8_1:+15748532 None:intergenic
CAGTTGCGGCGATTGAAGCA+GGG 0.637242 8_1:+15753481 Msa1181370:CDS
GTAGCTGTGTGGTCAAGTGT+TGG 0.651107 8_1:+15755071 Msa1181370:three_prime_UTR
CATGACAAAGTATAAAGGAG+TGG 0.651485 8_1:-15754388 None:intergenic
AACTATTCCTGTAACTACTG+TGG 0.654183 8_1:-15752968 None:intergenic
TGAGGGCTTCACTTGAGCTG+GGG 0.662479 8_1:-15748633 None:intergenic
AAATTTATAACATCTTCGAG+TGG 0.674904 8_1:-15755258 None:intergenic
GTTTGCGGCACTAAGAACTC+CGG 0.676719 8_1:-15754761 None:intergenic
AAAGAGACAATGATTGCTGG+AGG 0.680798 8_1:+15753525 Msa1181370:CDS
TGAGGAGCAAGGAGTCATTG+AGG 0.682191 8_1:+15752816 Msa1181370:CDS
AGTTGGGATTACCTGACATG+CGG 0.683657 8_1:+15754362 Msa1181370:CDS
TTGAATCTCATGTAGCTGTG+TGG 0.713858 8_1:+15755060 Msa1181370:exon
CAAACCTGAAATCATCCCTG+AGG 0.768183 8_1:+15752798 Msa1181370:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTTAAATATTATATTTACTA+AGG - chr8_1:15750180-15750199 None:intergenic 10.0%
!! CATAATATATAGTTAAAATT+AGG + chr8_1:15750897-15750916 Msa1181370:intron 10.0%
!!! ATATTTTTTCTCAAATTTTA+AGG - chr8_1:15751335-15751354 None:intergenic 10.0%
!!! TATTTTAGTAAAAAAAATGT+TGG + chr8_1:15751783-15751802 Msa1181370:intron 10.0%
!! TTTATTTAAATATATTCTGA+TGG + chr8_1:15754641-15754660 Msa1181370:intron 10.0%
!!! ATATTTTTTTTTTTTTGGAG+AGG + chr8_1:15748755-15748774 Msa1181370:intron 15.0%
!!! TATTTTTTTTTTTTTTGGAG+AGG + chr8_1:15748797-15748816 Msa1181370:intron 15.0%
!! CATTATAAGTTATTATTATC+CGG + chr8_1:15748881-15748900 Msa1181370:intron 15.0%
!!! AATATTATCATTTTTATGAC+CGG - chr8_1:15748903-15748922 None:intergenic 15.0%
!! ATAATAATAACTTATAAGCA+AGG - chr8_1:15748973-15748992 None:intergenic 15.0%
!!! AATAAAATAATTTGTAACAC+AGG - chr8_1:15749006-15749025 None:intergenic 15.0%
!! ATTGGAAAAAAGAATAATAT+AGG - chr8_1:15749050-15749069 None:intergenic 15.0%
!! AAAATATTAATAACTAACGA+AGG + chr8_1:15749099-15749118 Msa1181370:intron 15.0%
!!! CTAATATTAATTTTGCTTAA+GGG - chr8_1:15749625-15749644 None:intergenic 15.0%
!!! ACTAATATTAATTTTGCTTA+AGG - chr8_1:15749626-15749645 None:intergenic 15.0%
!! ATAAAATTAAATGAAAAGGA+TGG - chr8_1:15749767-15749786 None:intergenic 15.0%
!! TTGGATAAAATTAAATGAAA+AGG - chr8_1:15749771-15749790 None:intergenic 15.0%
!!! AAGTATATATATCTTCTTTT+TGG - chr8_1:15750680-15750699 None:intergenic 15.0%
!!! TGATTTTATAGAGTATAAAA+AGG + chr8_1:15750873-15750892 Msa1181370:intron 15.0%
!!! GATTTTATAGAGTATAAAAA+GGG + chr8_1:15750874-15750893 Msa1181370:intron 15.0%
!!! TTAAAATTAGTCATCTTTTT+AGG - chr8_1:15751127-15751146 None:intergenic 15.0%
!! ACAGACAAAATTATAATAAT+AGG - chr8_1:15751452-15751471 None:intergenic 15.0%
!! TTGTAAAATAACATATAAAG+TGG - chr8_1:15751810-15751829 None:intergenic 15.0%
!! AAAATCTTTGATTATTCATA+TGG - chr8_1:15751945-15751964 None:intergenic 15.0%
!! TTTGTTTGTATATAATGTAA+AGG + chr8_1:15755129-15755148 Msa1181370:three_prime_UTR 15.0%
!! TTGTTTGTATATAATGTAAA+GGG + chr8_1:15755130-15755149 Msa1181370:three_prime_UTR 15.0%
!! CAATATATATGTGTTAAAAA+GGG + chr8_1:15755156-15755175 Msa1181370:three_prime_UTR 15.0%
!!! TGATCAAAGTTTTTTTCATT+TGG + chr8_1:15748577-15748596 Msa1181370:five_prime_UTR 20.0%
!! AAATATATGTTACAGAAAAG+AGG - chr8_1:15748940-15748959 None:intergenic 20.0%
!!! GTTATGATAATATTGATGAT+TGG - chr8_1:15749068-15749087 None:intergenic 20.0%
!! TCATAAATAAAAAATGGTAG+TGG - chr8_1:15749251-15749270 None:intergenic 20.0%
!!! GCAAGATTTTTATAAACTTA+TGG + chr8_1:15749380-15749399 Msa1181370:intron 20.0%
!!! AATTTTATCCAACAACAAAT+TGG + chr8_1:15749779-15749798 Msa1181370:intron 20.0%
!! TAAATTTCACTCAAACAATT+TGG + chr8_1:15749815-15749834 Msa1181370:intron 20.0%
!!! ACGCTTTTTCATATATTTTT+TGG - chr8_1:15750202-15750221 None:intergenic 20.0%
!! TACAACAATCAAAATAGAAT+TGG + chr8_1:15750233-15750252 Msa1181370:intron 20.0%
!!! AAACACTCAAAAGTATATAT+AGG - chr8_1:15750392-15750411 None:intergenic 20.0%
!! ATTTATCATAAGAAAAATCC+AGG + chr8_1:15750540-15750559 Msa1181370:intron 20.0%
!!! AAAAGATGACTAATTTTAAG+TGG + chr8_1:15751128-15751147 Msa1181370:intron 20.0%
!!! AAAGATGACTAATTTTAAGT+GGG + chr8_1:15751129-15751148 Msa1181370:intron 20.0%
!!! CTATGAAAAACTTCTATTTT+TGG - chr8_1:15751875-15751894 None:intergenic 20.0%
!! ATTCTTTCATTTCAAACATT+TGG - chr8_1:15752042-15752061 None:intergenic 20.0%
!!! AATAAGTTGAAAATAGCTTA+TGG - chr8_1:15752288-15752307 None:intergenic 20.0%
!!! CAGTATTAATTTTTTCTTTC+AGG + chr8_1:15752924-15752943 Msa1181370:intron 20.0%
!! ACATATTTATATGATACAAG+AGG + chr8_1:15753375-15753394 Msa1181370:intron 20.0%
!! TAGAACTAAAAGAAGTTTAT+TGG + chr8_1:15753407-15753426 Msa1181370:intron 20.0%
!! CTGTAGAAAATAATAACAAT+AGG - chr8_1:15753457-15753476 None:intergenic 20.0%
!!! TTTTTATTTTTTCCTCTTCA+TGG + chr8_1:15754108-15754127 Msa1181370:intron 20.0%
!! AACACATTGTATTGTAAAAA+AGG - chr8_1:15754248-15754267 None:intergenic 20.0%
!!! TTTTTGTTATTGTTATTTGC+AGG + chr8_1:15754321-15754340 Msa1181370:intron 20.0%
!! GAGTAAAAAAATATGAAACA+AGG - chr8_1:15754482-15754501 None:intergenic 20.0%
!! TAATGAACATCAAAAAGAAT+TGG + chr8_1:15754952-15754971 Msa1181370:CDS 20.0%
!! GCAATATATATGTGTTAAAA+AGG + chr8_1:15755155-15755174 Msa1181370:three_prime_UTR 20.0%
!! AATTATATGAAATTGTTGAC+CGG + chr8_1:15755292-15755311 Msa1181370:three_prime_UTR 20.0%
! ATGATATCAGAGAAAAATGA+GGG - chr8_1:15748653-15748672 None:intergenic 25.0%
!!! TTTTTTTTTGGAGAGGTATA+TGG + chr8_1:15748762-15748781 Msa1181370:intron 25.0%
!!! TTTTTTTTTGGAGAGGTATA+TGG + chr8_1:15748762-15748781 Msa1181370:intron 25.0%
!! ATAATTTGTAACACAGGTTA+TGG - chr8_1:15749000-15749019 None:intergenic 25.0%
! CAATATTATCATAACATCAC+AGG + chr8_1:15749073-15749092 Msa1181370:intron 25.0%
!!! AAAAACAACCAATTTGTTGT+TGG - chr8_1:15749790-15749809 None:intergenic 25.0%
! GATTGAAAATAAAATTGCAG+TGG - chr8_1:15749887-15749906 None:intergenic 25.0%
! GAAAAATAGTTTAGATGAGT+CGG + chr8_1:15750706-15750725 Msa1181370:intron 25.0%
! GAAACTTAAAGGATTACTTT+GGG - chr8_1:15750961-15750980 None:intergenic 25.0%
! TGAAACTTAAAGGATTACTT+TGG - chr8_1:15750962-15750981 None:intergenic 25.0%
!! TGAAACTTAAAGACTTGTTT+GGG - chr8_1:15750990-15751009 None:intergenic 25.0%
!! TTGAAACTTAAAGACTTGTT+TGG - chr8_1:15750991-15751010 None:intergenic 25.0%
! GAAACGATTCAAAAACTAAA+AGG - chr8_1:15751231-15751250 None:intergenic 25.0%
!!! TTTCAAACAAGTCATTTTAG+AGG + chr8_1:15751045-15751064 Msa1181370:intron 25.0%
!!! ATTAGTCATCTTTTTAGGTA+TGG - chr8_1:15751122-15751141 None:intergenic 25.0%
! GAAACGATTCAAAAACTAAA+AGG + chr8_1:15751231-15751250 Msa1181370:intron 25.0%
!! AAAAACTAAAAGGACTTGTT+TGG + chr8_1:15751241-15751260 Msa1181370:intron 25.0%
!! AAAACTAAAAGGACTTGTTT+GGG + chr8_1:15751242-15751261 Msa1181370:intron 25.0%
! ATTACAAACTATGCACAAAT+TGG - chr8_1:15751398-15751417 None:intergenic 25.0%
!! AGTTTGATAATTGTTTGATC+AGG + chr8_1:15751496-15751515 Msa1181370:intron 25.0%
! GATAGAGAAATTGACATAAA+AGG - chr8_1:15751753-15751772 None:intergenic 25.0%
!! TGTTCATTTTCATAGAATTC+AGG - chr8_1:15751992-15752011 None:intergenic 25.0%
! TGTCTGCAAATTTAAGTAAA+AGG - chr8_1:15752086-15752105 None:intergenic 25.0%
!! TTTATTACATGTTTGGAGTA+AGG - chr8_1:15752211-15752230 None:intergenic 25.0%
! GATAAGGTTTATTACATGTT+TGG - chr8_1:15752218-15752237 None:intergenic 25.0%
!! GGAAATGTAATAAAAAGTGT+AGG - chr8_1:15752267-15752286 None:intergenic 25.0%
!!! CTTATTTCTATAAGCTCTTA+AGG + chr8_1:15752302-15752321 Msa1181370:intron 25.0%
! ATAATCTGTGAATCAATACT+AGG + chr8_1:15752391-15752410 Msa1181370:intron 25.0%
! ATCAATACTAGGATATGAAA+AGG + chr8_1:15752402-15752421 Msa1181370:intron 25.0%
! AAAAACCAAAGTTACCTTTA+TGG + chr8_1:15752439-15752458 Msa1181370:intron 25.0%
!! CAAGTATATCTCATTTTCAT+AGG + chr8_1:15752673-15752692 Msa1181370:intron 25.0%
! TAAAATTGATGAACTCAAAG+AGG + chr8_1:15752756-15752775 Msa1181370:CDS 25.0%
!!! ATACGTATATGATTAGCTTA+TGG + chr8_1:15752873-15752892 Msa1181370:intron 25.0%
! AAATTAATACTGCTCAGAAA+AGG - chr8_1:15752916-15752935 None:intergenic 25.0%
! TATTGTAAACTTAGCCATAT+TGG - chr8_1:15753055-15753074 None:intergenic 25.0%
! CTAAGAAAAATCCAATTAAC+TGG + chr8_1:15753736-15753755 Msa1181370:CDS 25.0%
! AAGTAGTTCAAAAACAGTAT+TGG + chr8_1:15753785-15753804 Msa1181370:intron 25.0%
! CTAAGTTACCTTATTGAAAA+GGG - chr8_1:15753996-15754015 None:intergenic 25.0%
! ACTAAGTTACCTTATTGAAA+AGG - chr8_1:15753997-15754016 None:intergenic 25.0%
! TTTCTTGCAAATCTACTTAA+TGG + chr8_1:15754062-15754081 Msa1181370:intron 25.0%
! AATGAATGTATGATAGATTG+TGG - chr8_1:15754206-15754225 None:intergenic 25.0%
! TCTATTGTACTGAAATTACA+TGG + chr8_1:15754422-15754441 Msa1181370:intron 25.0%
!!! TTTTTTTACTCTTTCGTAGA+TGG + chr8_1:15754491-15754510 Msa1181370:intron 25.0%
! TTAAATCACTGAGAAACAAA+AGG + chr8_1:15754515-15754534 Msa1181370:intron 25.0%
!! TAAATATATTCTGATGGATC+AGG + chr8_1:15754647-15754666 Msa1181370:intron 25.0%
!! TAAACTAATTTTCTCTCATC+AGG + chr8_1:15754888-15754907 Msa1181370:intron 25.0%
! AAATTCTTCACTATGATCAA+TGG + chr8_1:15754996-15755015 Msa1181370:CDS 25.0%
! AATTCTTCACTATGATCAAT+GGG + chr8_1:15754997-15755016 Msa1181370:CDS 25.0%
! CATAAACAAAATATGCTAGT+GGG - chr8_1:15755100-15755119 None:intergenic 25.0%
! ACATAAACAAAATATGCTAG+TGG - chr8_1:15755101-15755120 None:intergenic 25.0%
! AAATTTATAACATCTTCGAG+TGG - chr8_1:15755261-15755280 None:intergenic 25.0%
GATGATATCAGAGAAAAATG+AGG - chr8_1:15748654-15748673 None:intergenic 30.0%
!!! TAACGAAGGTATCCTTTTTT+AGG + chr8_1:15749113-15749132 Msa1181370:intron 30.0%
TCTCTATTTCCTCCTAAAAA+AGG - chr8_1:15749128-15749147 None:intergenic 30.0%
TTAGGAGGAAATAGAGAAAA+AGG + chr8_1:15749131-15749150 Msa1181370:intron 30.0%
GTGTATGTTAAAGTTATACG+AGG + chr8_1:15749414-15749433 Msa1181370:intron 30.0%
! ATACGAGGAAACATCTTTTA+TGG + chr8_1:15749429-15749448 Msa1181370:intron 30.0%
! AACATCTTTTATGGTGTGTT+TGG + chr8_1:15749438-15749457 Msa1181370:intron 30.0%
GAGAAATAGAGTAGATTTGA+TGG + chr8_1:15749524-15749543 Msa1181370:intron 30.0%
!! AGTAGATTTGATGGATTGTT+TGG + chr8_1:15749533-15749552 Msa1181370:intron 30.0%
TTAAATGAAAAGGATGGTCT+TGG - chr8_1:15749761-15749780 None:intergenic 30.0%
TGAAAATAAAATTGCAGTGG+TGG - chr8_1:15749884-15749903 None:intergenic 30.0%
AACCACAATTGTTGAAGATA+GGG + chr8_1:15749950-15749969 Msa1181370:intron 30.0%
!! ATATTTACTAAGGCCTTGTT+TGG - chr8_1:15750170-15750189 None:intergenic 30.0%
TAGGCATAAAATAAGCTAGA+AGG - chr8_1:15750373-15750392 None:intergenic 30.0%
GCATTATCTCTGTATTTCTT+TGG - chr8_1:15750448-15750467 None:intergenic 30.0%
ATACACATGCATGAGTTATT+TGG + chr8_1:15750483-15750502 Msa1181370:intron 30.0%
!!! ACAGAAAACACTTTTTCATG+CGG - chr8_1:15750519-15750538 None:intergenic 30.0%
TATCATAAGAAAAATCCAGG+AGG + chr8_1:15750543-15750562 Msa1181370:intron 30.0%
ATCATAAGAAAAATCCAGGA+GGG + chr8_1:15750544-15750563 Msa1181370:intron 30.0%
ATTAGGTCAAATGCATCTAA+AGG + chr8_1:15750914-15750933 Msa1181370:intron 30.0%
GGGAAAAACGAAAAACTTAA+AGG - chr8_1:15751291-15751310 None:intergenic 30.0%
!!! TTGGGACTTTTGAAACTTAA+AGG - chr8_1:15751260-15751279 None:intergenic 30.0%
!!! ATCTTTTTAGGTATGGCAAA+TGG - chr8_1:15751115-15751134 None:intergenic 30.0%
!! ACTAATTTTAAGTGGGTGTT+AGG + chr8_1:15751136-15751155 Msa1181370:intron 30.0%
!!! TTGGGACTTTTGAAACTTAA+AGG + chr8_1:15751260-15751279 Msa1181370:intron 30.0%
GGGAAAAACGAAAAACTTAA+AGG + chr8_1:15751291-15751310 Msa1181370:intron 30.0%
TTTGCATTGAAGAGAAAAGA+GGG + chr8_1:15751523-15751542 Msa1181370:CDS 30.0%
!!! AGCCTAGTGATTTTAAAACA+TGG + chr8_1:15751629-15751648 Msa1181370:CDS 30.0%
!!! GCCTAGTGATTTTAAAACAT+GGG + chr8_1:15751630-15751649 Msa1181370:CDS 30.0%
!!! TCCCATGTTTTAAAATCACT+AGG - chr8_1:15751634-15751653 None:intergenic 30.0%
!!! AGTGATTTTAAAACATGGGA+TGG + chr8_1:15751634-15751653 Msa1181370:CDS 30.0%
!!! TTCTATTTTTGGTTTCCTTC+GGG - chr8_1:15751864-15751883 None:intergenic 30.0%
!!! CTTCTATTTTTGGTTTCCTT+CGG - chr8_1:15751865-15751884 None:intergenic 30.0%
TTTGCAGACACTTAATATAG+TGG + chr8_1:15752096-15752115 Msa1181370:intron 30.0%
! ACATTCAGTCTTATGTGATA+AGG - chr8_1:15752234-15752253 None:intergenic 30.0%
TAAGCTCTTAAGGATAACTT+AGG + chr8_1:15752312-15752331 Msa1181370:intron 30.0%
AAGAAATGCAAAGTGAAAGA+TGG - chr8_1:15752370-15752389 None:intergenic 30.0%
ATCAACCATAAAGGTAACTT+TGG - chr8_1:15752447-15752466 None:intergenic 30.0%
TAGAGAGAAATCAACCATAA+AGG - chr8_1:15752456-15752475 None:intergenic 30.0%
! CCTCAGATTTAAGATATGTA+TGG - chr8_1:15752633-15752652 None:intergenic 30.0%
CCATACATATCTTAAATCTG+AGG + chr8_1:15752630-15752649 Msa1181370:intron 30.0%
! ATATCTTAAATCTGAGGTGT+TGG + chr8_1:15752636-15752655 Msa1181370:intron 30.0%
!! CATAGGTTTTAATATTGTGC+AGG + chr8_1:15752690-15752709 Msa1181370:intron 30.0%
!! GTTTTAATATTGTGCAGGTA+AGG + chr8_1:15752695-15752714 Msa1181370:intron 30.0%
ATCCTCATATGTAACCAATA+TGG + chr8_1:15753038-15753057 Msa1181370:intron 30.0%
CATGTGATATGTACTAATCA+AGG + chr8_1:15753312-15753331 Msa1181370:intron 30.0%
!!! ATGTTATTTTTGTGAGCAAG+AGG - chr8_1:15753564-15753583 None:intergenic 30.0%
! AGAACATTCTGCAATTTTTC+AGG + chr8_1:15753605-15753624 Msa1181370:CDS 30.0%
AGAGTTTATGCATATGATGA+TGG - chr8_1:15753641-15753660 None:intergenic 30.0%
TAATTGATCACTGATGCTTA+TGG + chr8_1:15753670-15753689 Msa1181370:intron 30.0%
! AAAATCCAATTAACTGGTTC+TGG + chr8_1:15753742-15753761 Msa1181370:CDS 30.0%
! CATTTGTCGATTGATAATTC+AGG - chr8_1:15753850-15753869 None:intergenic 30.0%
TCAATCGACAAATGCTAATA+TGG + chr8_1:15753856-15753875 Msa1181370:intron 30.0%
GATGAAAGACATTAAGCTTA+AGG + chr8_1:15753913-15753932 Msa1181370:CDS 30.0%
ATTGAAGCACATTACTTGTT+TGG + chr8_1:15754146-15754165 Msa1181370:CDS 30.0%
ACATTCATTAGTTGAAACAC+AGG + chr8_1:15754217-15754236 Msa1181370:CDS 30.0%
TTCTCAAAGCATAATTGCTA+AGG - chr8_1:15754842-15754861 None:intergenic 30.0%
TGAAGAATTTCTTCAAGTGT+AGG - chr8_1:15754986-15755005 None:intergenic 30.0%
! ACTTAAAGCTTTTTGCAAAC+CGG - chr8_1:15755038-15755057 None:intergenic 30.0%
CTTGTTTGTTCAAATTCATC+CGG - chr8_1:15755314-15755333 None:intergenic 30.0%
TCATCATGCACGTACATATA+TGG + chr8_1:15748727-15748746 Msa1181370:intron 35.0%
GAGTTTGTGAAGAGAGAAAA+AGG + chr8_1:15749500-15749519 Msa1181370:intron 35.0%
ATCTCAAAACTGTGTTGTGT+TGG + chr8_1:15749904-15749923 Msa1181370:intron 35.0%
CAACCACAATTGTTGAAGAT+AGG + chr8_1:15749949-15749968 Msa1181370:intron 35.0%
ACCACAATTGTTGAAGATAG+GGG + chr8_1:15749951-15749970 Msa1181370:intron 35.0%
GAGAGAGACTAAATTTGTGT+GGG - chr8_1:15750056-15750075 None:intergenic 35.0%
AGAGAGAGACTAAATTTGTG+TGG - chr8_1:15750057-15750076 None:intergenic 35.0%
AACACACAATCTCTTCTGTT+TGG - chr8_1:15750097-15750116 None:intergenic 35.0%
TATTTCACCTCTACCAAACA+AGG + chr8_1:15750154-15750173 Msa1181370:intron 35.0%
!! ATATGAAAAAGCGTCGTTCA+TGG + chr8_1:15750208-15750227 Msa1181370:intron 35.0%
CATGTGTATTATAACCGAGA+CGG - chr8_1:15750472-15750491 None:intergenic 35.0%
TCATAAGAAAAATCCAGGAG+GGG + chr8_1:15750545-15750564 Msa1181370:intron 35.0%
! AGGGGTGACATTTATCATTT+TGG + chr8_1:15750563-15750582 Msa1181370:intron 35.0%
! GGGGTGACATTTATCATTTT+GGG + chr8_1:15750564-15750583 Msa1181370:intron 35.0%
TTTAGATGAGTCGGATTTCA+TGG + chr8_1:15750715-15750734 Msa1181370:intron 35.0%
TATTTACATACCCGCTAACA+AGG + chr8_1:15750787-15750806 Msa1181370:intron 35.0%
CAACTCTCATTGTTTGTGTT+AGG - chr8_1:15750814-15750833 None:intergenic 35.0%
!! CAAGTCATTTTAGAGGATGA+TGG + chr8_1:15751052-15751071 Msa1181370:intron 35.0%
!!! TTTTTAGGTATGGCAAATGG+TGG - chr8_1:15751112-15751131 None:intergenic 35.0%
CCTATTGTAGATAGCATAGT+TGG - chr8_1:15751203-15751222 None:intergenic 35.0%
CCAACTATGCTATCTACAAT+AGG + chr8_1:15751200-15751219 Msa1181370:intron 35.0%
TGAAACTTAAAGGACCACTT+TGG + chr8_1:15751270-15751289 Msa1181370:intron 35.0%
GAAACTTAAAGGACCACTTT+GGG + chr8_1:15751271-15751290 Msa1181370:intron 35.0%
!! GTTTTTCGTTTTTCCCAAAG+TGG - chr8_1:15750945-15750964 None:intergenic 35.0%
TTAAGGTCAAGTGCATCTAA+AGG - chr8_1:15751318-15751337 None:intergenic 35.0%
CTTTGCATTGAAGAGAAAAG+AGG + chr8_1:15751522-15751541 Msa1181370:CDS 35.0%
!!! GTTTTAAAATCACTAGGCTG+AGG - chr8_1:15751628-15751647 None:intergenic 35.0%
AATGAACACTCTAAGTTCTC+TGG + chr8_1:15752004-15752023 Msa1181370:intron 35.0%
! TCCAGAAAGATTTAGAGTTG+TGG + chr8_1:15752126-15752145 Msa1181370:CDS 35.0%
! CCAGAAAGATTTAGAGTTGT+GGG + chr8_1:15752127-15752146 Msa1181370:CDS 35.0%
! CAGAAAGATTTAGAGTTGTG+GGG + chr8_1:15752128-15752147 Msa1181370:CDS 35.0%
ATCAGTGTTTCATAGCTCAA+AGG - chr8_1:15752494-15752513 None:intergenic 35.0%
GTAATGTGTTAGTGTCATGT+CGG + chr8_1:15752587-15752606 Msa1181370:intron 35.0%
!! CGTATATGATTAGCTTATGG+AGG + chr8_1:15752876-15752895 Msa1181370:intron 35.0%
AACTATTCCTGTAACTACTG+TGG - chr8_1:15752971-15752990 None:intergenic 35.0%
ACAGTAGTTACAGGAATAGT+TGG + chr8_1:15752970-15752989 Msa1181370:CDS 35.0%
! AGCCATATTGGTTACATATG+AGG - chr8_1:15753043-15753062 None:intergenic 35.0%
TACGTTCAGCAGATGATTAA+TGG + chr8_1:15753133-15753152 Msa1181370:intron 35.0%
!! AGTTAATGAGTTTTGACGTC+TGG - chr8_1:15753164-15753183 None:intergenic 35.0%
AACAAAGAGACAATGATTGC+TGG + chr8_1:15753522-15753541 Msa1181370:CDS 35.0%
! ATTTTTCTTAGTGCACCCTT+TGG - chr8_1:15753727-15753746 None:intergenic 35.0%
TCGACAAATGCTAATATGGT+CGG + chr8_1:15753860-15753879 Msa1181370:intron 35.0%
! ATGTCTTTCATCTTTTCAGC+AGG - chr8_1:15753905-15753924 None:intergenic 35.0%
! ATGCATTAAAGCATCCCATT+TGG + chr8_1:15753936-15753955 Msa1181370:CDS 35.0%
TTTCTTCCCAAACTCCAAAT+GGG - chr8_1:15753953-15753972 None:intergenic 35.0%
! TTCTGCTACCCTTTTCAATA+AGG + chr8_1:15753985-15754004 Msa1181370:CDS 35.0%
!!! TATTTTTTCCTCTTCATGGC+AGG + chr8_1:15754112-15754131 Msa1181370:intron 35.0%
!!! ATTTTTTCCTCTTCATGGCA+GGG + chr8_1:15754113-15754132 Msa1181370:intron 35.0%
TTCTTCTGTTATTGCACAGT+TGG + chr8_1:15754345-15754364 Msa1181370:CDS 35.0%
TCTTCTGTTATTGCACAGTT+GGG + chr8_1:15754346-15754365 Msa1181370:CDS 35.0%
CATGACAAAGTATAAAGGAG+TGG - chr8_1:15754391-15754410 None:intergenic 35.0%
CACTCCTTTATACTTTGTCA+TGG + chr8_1:15754389-15754408 Msa1181370:CDS 35.0%
TCAGTACAATAGACTCTTTC+TGG - chr8_1:15754415-15754434 None:intergenic 35.0%
GATTGTACTTGGTAAGATCA+AGG - chr8_1:15754453-15754472 None:intergenic 35.0%
CAAGGAGAATTGATTGTACT+TGG - chr8_1:15754464-15754483 None:intergenic 35.0%
! ATATTCTGATGGATCAGGTA+TGG + chr8_1:15754652-15754671 Msa1181370:intron 35.0%
CAAGTGCATGTTTAGATTGA+TGG + chr8_1:15755330-15755349 Msa1181370:three_prime_UTR 35.0%
TTTGGCTAATTCGCTGATCA+TGG + chr8_1:15748595-15748614 Msa1181370:exon 40.0%
!! AAGAACCTGGAAGTTTTGTG+GGG - chr8_1:15748691-15748710 None:intergenic 40.0%
!! GAAGAACCTGGAAGTTTTGT+GGG - chr8_1:15748692-15748711 None:intergenic 40.0%
! AGAAGAACCTGGAAGTTTTG+TGG - chr8_1:15748693-15748712 None:intergenic 40.0%
!!! CGAAGGTATCCTTTTTTAGG+AGG + chr8_1:15749116-15749135 Msa1181370:intron 40.0%
ACTTCTTCCTATAAGCTGCA+TGG + chr8_1:15749323-15749342 Msa1181370:intron 40.0%
TCTCTATCCATGCAGCTTAT+AGG - chr8_1:15749333-15749352 None:intergenic 40.0%
AGAGATATGCTACCTGAGTA+CGG + chr8_1:15749348-15749367 Msa1181370:intron 40.0%
GAAGTTGTGAAGAGAGAAGT+AGG + chr8_1:15749470-15749489 Msa1181370:intron 40.0%
! AATGAAAAGGATGGTCTTGG+TGG - chr8_1:15749758-15749777 None:intergenic 40.0%
!! GCGAAGAGAGCATGAATTTT+TGG - chr8_1:15749991-15750010 None:intergenic 40.0%
GAAATAGAGACGAGAGAAAG+AGG - chr8_1:15750140-15750159 None:intergenic 40.0%
! GGCACGACATGTTCATTTTA+TGG + chr8_1:15750325-15750344 Msa1181370:intron 40.0%
!!! GAAAACACTTTTTCATGCGG+TGG - chr8_1:15750516-15750535 None:intergenic 40.0%
TGGCACACTAAAGACAAAGT+AGG + chr8_1:15750735-15750754 Msa1181370:intron 40.0%
GGCACACTAAAGACAAAGTA+GGG + chr8_1:15750736-15750755 Msa1181370:intron 40.0%
TTGTGTTAGGACCTTGTTAG+CGG - chr8_1:15750801-15750820 None:intergenic 40.0%
CTCATCTTTGGTACCAAATC+TGG - chr8_1:15751164-15751183 None:intergenic 40.0%
TGGTACCAAAGATGAGTTCA+AGG + chr8_1:15751168-15751187 Msa1181370:intron 40.0%
TGCTTCCTTGAACTCATCTT+TGG - chr8_1:15751176-15751195 None:intergenic 40.0%
!! CCTAAGACAGAAATGGGTTT+TGG - chr8_1:15751661-15751680 None:intergenic 40.0%
CCAAAACCCATTTCTGTCTT+AGG + chr8_1:15751658-15751677 Msa1181370:CDS 40.0%
GTTGAGCCTAAGACAGAAAT+GGG - chr8_1:15751667-15751686 None:intergenic 40.0%
AGTTGAGCCTAAGACAGAAA+TGG - chr8_1:15751668-15751687 None:intergenic 40.0%
ATTTCTGTCTTAGGCTCAAC+TGG + chr8_1:15751667-15751686 Msa1181370:CDS 40.0%
! TTAGGCTCAACTGGTTCAAT+TGG + chr8_1:15751676-15751695 Msa1181370:CDS 40.0%
! AACTGGTTCAATTGGAACTC+AGG + chr8_1:15751684-15751703 Msa1181370:CDS 40.0%
CCCACAACTCTAAATCTTTC+TGG - chr8_1:15752130-15752149 None:intergenic 40.0%
TGTTACTCTTCTTGCTGAAC+AGG + chr8_1:15752168-15752187 Msa1181370:CDS 40.0%
! TCTCTAAGAGCTACTAACTC+AGG - chr8_1:15752730-15752749 None:intergenic 40.0%
TGATGAACTCAAAGAGGCTT+TGG + chr8_1:15752762-15752781 Msa1181370:CDS 40.0%
GTTAACGCAGTTCAAAGAGA+AGG + chr8_1:15753096-15753115 Msa1181370:intron 40.0%
TGTTCATGACTACATGCTCA+TGG + chr8_1:15753341-15753360 Msa1181370:intron 40.0%
! TTTTCTACAGCCAACAGTTG+CGG + chr8_1:15753467-15753486 Msa1181370:intron 40.0%
AAAGAGACAATGATTGCTGG+AGG + chr8_1:15753525-15753544 Msa1181370:CDS 40.0%
TTCTCTTCACAGTGTATCCA+AGG + chr8_1:15753697-15753716 Msa1181370:intron 40.0%
TGTATCCAAGGTTTGCCAAA+GGG + chr8_1:15753709-15753728 Msa1181370:CDS 40.0%
!! ATCCAATTAACTGGTTCTGG+AGG + chr8_1:15753745-15753764 Msa1181370:CDS 40.0%
! AAAGCATCCCATTTGGAGTT+TGG + chr8_1:15753943-15753962 Msa1181370:CDS 40.0%
! AAGCATCCCATTTGGAGTTT+GGG + chr8_1:15753944-15753963 Msa1181370:CDS 40.0%
CTTTCTTCCCAAACTCCAAA+TGG - chr8_1:15753954-15753973 None:intergenic 40.0%
CTGGCCATGACAAAGTATAA+AGG - chr8_1:15754396-15754415 None:intergenic 40.0%
AGCACTTGTAAGACTGTTAG+TGG + chr8_1:15754584-15754603 Msa1181370:intron 40.0%
GATGGAAACTTCTTAGTGTC+TGG - chr8_1:15754697-15754716 None:intergenic 40.0%
GCATAGCAAAGATTCACTGA+TGG - chr8_1:15754715-15754734 None:intergenic 40.0%
TTGAATCTCATGTAGCTGTG+TGG + chr8_1:15755060-15755079 Msa1181370:exon 40.0%
CGAGTGGAAGAACTACATAT+TGG - chr8_1:15755245-15755264 None:intergenic 40.0%
! GTTTTGTGGGGGTGATAACT+GGG - chr8_1:15748679-15748698 None:intergenic 45.0%
!! AGTTTTGTGGGGGTGATAAC+TGG - chr8_1:15748680-15748699 None:intergenic 45.0%
!! AGAACCTGGAAGTTTTGTGG+GGG - chr8_1:15748690-15748709 None:intergenic 45.0%
AAAGACAGGAGAGAAGAACC+TGG - chr8_1:15748704-15748723 None:intergenic 45.0%
GTGCATGATGAGACAAAGAC+AGG - chr8_1:15748718-15748737 None:intergenic 45.0%
TGCATCTTGTATCCGTACTC+AGG - chr8_1:15749363-15749382 None:intergenic 45.0%
! AAAGGATGGTCTTGGTGGTA+GGG - chr8_1:15749753-15749772 None:intergenic 45.0%
! AAAAGGATGGTCTTGGTGGT+AGG - chr8_1:15749754-15749773 None:intergenic 45.0%
GCCCCTATCTTCAACAATTG+TGG - chr8_1:15749955-15749974 None:intergenic 45.0%
GTTGAAGATAGGGGCAAAGT+TGG + chr8_1:15749960-15749979 Msa1181370:intron 45.0%
! GCCACTTTCTTCGCATAGTT+GGG + chr8_1:15750009-15750028 Msa1181370:intron 45.0%
CCACTTTCTTCGCATAGTTG+GGG + chr8_1:15750010-15750029 Msa1181370:intron 45.0%
TGGGGAGACTCAAATTTGAG+TGG + chr8_1:15750028-15750047 Msa1181370:intron 45.0%
GGGGAGACTCAAATTTGAGT+GGG + chr8_1:15750029-15750048 Msa1181370:intron 45.0%
!! ACTAAGGCCTTGTTTGGTAG+AGG - chr8_1:15750164-15750183 None:intergenic 45.0%
! AGTGCTGCTATATAGCACGA+CGG + chr8_1:15750286-15750305 Msa1181370:intron 45.0%
! GACGGATTCAACACACGAAA+CGG + chr8_1:15750304-15750323 Msa1181370:intron 45.0%
ACAGAGATAATGCACCGTCT+CGG + chr8_1:15750455-15750474 Msa1181370:intron 45.0%
ATGATAAATGTCACCCCTCC+TGG - chr8_1:15750561-15750580 None:intergenic 45.0%
TGTGTTAGGACCTTGTTAGC+GGG - chr8_1:15750800-15750819 None:intergenic 45.0%
CAAACCTGAAATCATCCCTG+AGG + chr8_1:15752798-15752817 Msa1181370:CDS 45.0%
ACAGGAATAGTTGGTTGTGC+AGG + chr8_1:15752979-15752998 Msa1181370:CDS 45.0%
AGTTGGTTGTGCAGGATTGA+AGG + chr8_1:15752987-15753006 Msa1181370:CDS 45.0%
AGTGACTACGTACACGTTCT+TGG - chr8_1:15753199-15753218 None:intergenic 45.0%
! GCAGAATGTTCTGAATCAGC+AGG - chr8_1:15753597-15753616 None:intergenic 45.0%
GTGTATCCAAGGTTTGCCAA+AGG + chr8_1:15753708-15753727 Msa1181370:intron 45.0%
CACCTCCAGAACCAGTTAAT+TGG - chr8_1:15753750-15753769 None:intergenic 45.0%
TCGGTATCATTGACAGAGAG+TGG + chr8_1:15753879-15753898 Msa1181370:intron 45.0%
TTCTAAACCCTGCCATGAAG+AGG - chr8_1:15754123-15754142 None:intergenic 45.0%
AGTTGGGATTACCTGACATG+CGG + chr8_1:15754362-15754381 Msa1181370:CDS 45.0%
TACTTGGTAAGATCAAGGCG+AGG - chr8_1:15754448-15754467 None:intergenic 45.0%
! GTGAATCTTTGCTATGCTGC+CGG + chr8_1:15754718-15754737 Msa1181370:CDS 45.0%
TTCGACAGCTATCTCGTTTG+CGG - chr8_1:15754779-15754798 None:intergenic 45.0%
!!! TTGATATATTTTTTTTTTTT+TGG + chr8_1:15748750-15748769 Msa1181370:intron 5.0%
!!! ATGAATATTTTTTTTTTTTT+TGG + chr8_1:15748792-15748811 Msa1181370:intron 5.0%
!!! AATTATTTTATTGAATTAAA+TGG + chr8_1:15749014-15749033 Msa1181370:intron 5.0%
!! AATAAATCATAAATAAAAAA+TGG - chr8_1:15749257-15749276 None:intergenic 5.0%
!!! TATATTGTATATATTTTTAA+GGG - chr8_1:15751369-15751388 None:intergenic 5.0%
!!! TTATATTGTATATATTTTTA+AGG - chr8_1:15751370-15751389 None:intergenic 5.0%
ATGAGGGCTTCACTTGAGCT+GGG - chr8_1:15748637-15748656 None:intergenic 50.0%
AATGAGGGCTTCACTTGAGC+TGG - chr8_1:15748638-15748657 None:intergenic 50.0%
ATCACCCCCACAAAACTTCC+AGG + chr8_1:15748683-15748702 Msa1181370:CDS 50.0%
TTCACTGACGAGAGATGCAG+CGG - chr8_1:15749720-15749739 None:intergenic 50.0%
! CGCCACTTTCTTCGCATAGT+TGG + chr8_1:15750008-15750027 Msa1181370:intron 50.0%
CCCCAACTATGCGAAGAAAG+TGG - chr8_1:15750013-15750032 None:intergenic 50.0%
TGGGTGTTAGGAGCCAGATT+TGG + chr8_1:15751148-15751167 Msa1181370:intron 50.0%
!! TCTTACTGACTTGTGCCCGA+AGG + chr8_1:15751846-15751865 Msa1181370:intron 50.0%
TGTCGGACACTGACACATGT+TGG + chr8_1:15752604-15752623 Msa1181370:intron 50.0%
!! CTGAGGTGTTGGTACTACGT+CGG + chr8_1:15752647-15752666 Msa1181370:intron 50.0%
! GAACTCAAAGAGGCTTTGGC+TGG + chr8_1:15752766-15752785 Msa1181370:CDS 50.0%
TGCTCCTCAGGGATGATTTC+AGG - chr8_1:15752805-15752824 None:intergenic 50.0%
GAAATCATCCCTGAGGAGCA+AGG + chr8_1:15752805-15752824 Msa1181370:CDS 50.0%
CAATGACTCCTTGCTCCTCA+GGG - chr8_1:15752816-15752835 None:intergenic 50.0%
TCAATGACTCCTTGCTCCTC+AGG - chr8_1:15752817-15752836 None:intergenic 50.0%
TGAGGAGCAAGGAGTCATTG+AGG + chr8_1:15752816-15752835 Msa1181370:CDS 50.0%
TAACTACTGTGGCCGCATCA+GGG - chr8_1:15752960-15752979 None:intergenic 50.0%
!! TCTGGAGGTGCTTTCAGGTA+TGG + chr8_1:15753760-15753779 Msa1181370:intron 50.0%
GTTTGCGGCACTAAGAACTC+CGG - chr8_1:15754764-15754783 None:intergenic 50.0%
TGGGCAAGACAATATGCTGC+CGG + chr8_1:15755016-15755035 Msa1181370:CDS 50.0%
GTAGCTGTGTGGTCAAGTGT+TGG + chr8_1:15755071-15755090 Msa1181370:three_prime_UTR 50.0%
TGAGGGCTTCACTTGAGCTG+GGG - chr8_1:15748636-15748655 None:intergenic 55.0%
TCACTGACGAGAGATGCAGC+GGG - chr8_1:15749719-15749738 None:intergenic 55.0%
ATAGCTGTTCCTGGCCAAGC+TGG - chr8_1:15751604-15751623 None:intergenic 55.0%
GGCTGAGGAATAGCTGTTCC+TGG - chr8_1:15751613-15751632 None:intergenic 55.0%
GTAACTACTGTGGCCGCATC+AGG - chr8_1:15752961-15752980 None:intergenic 55.0%
GATGCGGCCACAGTAGTTAC+AGG + chr8_1:15752961-15752980 Msa1181370:CDS 55.0%
GCTTCAATCGCCGCAACTGT+TGG - chr8_1:15753480-15753499 None:intergenic 55.0%
ACAGTTGCGGCGATTGAAGC+AGG + chr8_1:15753480-15753499 Msa1181370:CDS 55.0%
CAGTTGCGGCGATTGAAGCA+GGG + chr8_1:15753481-15753500 Msa1181370:CDS 55.0%
GTGCACCCTTTGGCAAACCT+TGG - chr8_1:15753717-15753736 None:intergenic 55.0%
!! CTGGTTCTGGAGGTGCTTTC+AGG + chr8_1:15753755-15753774 Msa1181370:CDS 55.0%
GGCACTAAGAACTCCGGTCA+TGG - chr8_1:15754758-15754777 None:intergenic 55.0%
GGCTTCACTTGAGCTGGGGA+GGG - chr8_1:15748632-15748651 None:intergenic 60.0%
AGAGATGCAGCGGGAAGGTG+GGG - chr8_1:15749710-15749729 None:intergenic 60.0%
GAGAGATGCAGCGGGAAGGT+GGG - chr8_1:15749711-15749730 None:intergenic 60.0%
TGACGAGAGATGCAGCGGGA+AGG - chr8_1:15749715-15749734 None:intergenic 60.0%
! GGATGGTCTTGGTGGTAGGG+TGG - chr8_1:15749750-15749769 None:intergenic 60.0%
CACACTCACCACCACCAGCT+TGG + chr8_1:15751587-15751606 Msa1181370:CDS 60.0%
AGAGTTGTGGGGCTTGCAGC+TGG + chr8_1:15752139-15752158 Msa1181370:CDS 60.0%
GGTTGCTCGTCACCCTGATG+CGG + chr8_1:15752945-15752964 Msa1181370:intron 60.0%
AGGAGTGGCAACCGCATGTC+AGG - chr8_1:15754376-15754395 None:intergenic 60.0%
GGGCTTCACTTGAGCTGGGG+AGG - chr8_1:15748633-15748652 None:intergenic 65.0%
AGATGCAGCGGGAAGGTGGG+GGG - chr8_1:15749708-15749727 None:intergenic 65.0%
GAGATGCAGCGGGAAGGTGG+GGG - chr8_1:15749709-15749728 None:intergenic 65.0%
CGAGAGATGCAGCGGGAAGG+TGG - chr8_1:15749712-15749731 None:intergenic 65.0%
TCACCACCACCAGCTTGGCC+AGG + chr8_1:15751592-15751611 Msa1181370:CDS 65.0%
GTTCCTGGCCAAGCTGGTGG+TGG - chr8_1:15751598-15751617 None:intergenic 65.0%
GCTGTTCCTGGCCAAGCTGG+TGG - chr8_1:15751601-15751620 None:intergenic 65.0%
TGCTATGCTGCCGGACGTGC+TGG + chr8_1:15754727-15754746 Msa1181370:CDS 65.0%
TATGCTGCCGGACGTGCTGG+AGG + chr8_1:15754730-15754749 Msa1181370:CDS 65.0%
CATGGTGCCTCCAGCACGTC+CGG - chr8_1:15754740-15754759 None:intergenic 65.0%
!! CGTGCTGGAGGCACCATGAC+CGG + chr8_1:15754742-15754761 Msa1181370:CDS 65.0%
GCGGGAAGGTGGGGGGTGGT+TGG - chr8_1:15749701-15749720 None:intergenic 75.0%
TGCAGCGGGAAGGTGGGGGG+TGG - chr8_1:15749705-15749724 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 15748536 15755466 15748536 ID=Msa1181370;Name=Msa1181370
chr8_1 mRNA 15748536 15755466 15748536 ID=Msa1181370-mRNA-1;Parent=Msa1181370;Name=Msa1181370-mRNA-1;_AED=0.10;_eAED=0.10;_QI=78|0.81|0.75|1|1|1|12|403|443
chr8_1 exon 15748536 15748704 15748536 ID=Msa1181370-mRNA-1:exon:5895;Parent=Msa1181370-mRNA-1
chr8_1 exon 15751518 15751705 15751518 ID=Msa1181370-mRNA-1:exon:5896;Parent=Msa1181370-mRNA-1
chr8_1 exon 15752103 15752189 15752103 ID=Msa1181370-mRNA-1:exon:5897;Parent=Msa1181370-mRNA-1
chr8_1 exon 15752727 15752837 15752727 ID=Msa1181370-mRNA-1:exon:5898;Parent=Msa1181370-mRNA-1
chr8_1 exon 15752946 15753008 15752946 ID=Msa1181370-mRNA-1:exon:5899;Parent=Msa1181370-mRNA-1
chr8_1 exon 15753477 15753626 15753477 ID=Msa1181370-mRNA-1:exon:5900;Parent=Msa1181370-mRNA-1
chr8_1 exon 15753709 15753776 15753709 ID=Msa1181370-mRNA-1:exon:5901;Parent=Msa1181370-mRNA-1
chr8_1 exon 15753895 15754006 15753895 ID=Msa1181370-mRNA-1:exon:5902;Parent=Msa1181370-mRNA-1
chr8_1 exon 15754134 15754238 15754134 ID=Msa1181370-mRNA-1:exon:5903;Parent=Msa1181370-mRNA-1
chr8_1 exon 15754343 15754427 15754343 ID=Msa1181370-mRNA-1:exon:5904;Parent=Msa1181370-mRNA-1
chr8_1 exon 15754698 15754815 15754698 ID=Msa1181370-mRNA-1:exon:5905;Parent=Msa1181370-mRNA-1
chr8_1 exon 15754910 15755466 15754910 ID=Msa1181370-mRNA-1:exon:5906;Parent=Msa1181370-mRNA-1
chr8_1 five_prime_UTR 15748536 15748613 15748536 ID=Msa1181370-mRNA-1:five_prime_utr;Parent=Msa1181370-mRNA-1
chr8_1 CDS 15748614 15748704 15748614 ID=Msa1181370-mRNA-1:cds;Parent=Msa1181370-mRNA-1
chr8_1 CDS 15751518 15751705 15751518 ID=Msa1181370-mRNA-1:cds;Parent=Msa1181370-mRNA-1
chr8_1 CDS 15752103 15752189 15752103 ID=Msa1181370-mRNA-1:cds;Parent=Msa1181370-mRNA-1
chr8_1 CDS 15752727 15752837 15752727 ID=Msa1181370-mRNA-1:cds;Parent=Msa1181370-mRNA-1
chr8_1 CDS 15752946 15753008 15752946 ID=Msa1181370-mRNA-1:cds;Parent=Msa1181370-mRNA-1
chr8_1 CDS 15753477 15753626 15753477 ID=Msa1181370-mRNA-1:cds;Parent=Msa1181370-mRNA-1
chr8_1 CDS 15753709 15753776 15753709 ID=Msa1181370-mRNA-1:cds;Parent=Msa1181370-mRNA-1
chr8_1 CDS 15753895 15754006 15753895 ID=Msa1181370-mRNA-1:cds;Parent=Msa1181370-mRNA-1
chr8_1 CDS 15754134 15754238 15754134 ID=Msa1181370-mRNA-1:cds;Parent=Msa1181370-mRNA-1
chr8_1 CDS 15754343 15754427 15754343 ID=Msa1181370-mRNA-1:cds;Parent=Msa1181370-mRNA-1
chr8_1 CDS 15754698 15754815 15754698 ID=Msa1181370-mRNA-1:cds;Parent=Msa1181370-mRNA-1
chr8_1 CDS 15754910 15755063 15754910 ID=Msa1181370-mRNA-1:cds;Parent=Msa1181370-mRNA-1
chr8_1 three_prime_UTR 15755064 15755466 15755064 ID=Msa1181370-mRNA-1:three_prime_utr;Parent=Msa1181370-mRNA-1
Gene Sequence

>Msa1181370

ATGGCTTTGAATTTGCCCTCCCCAGCTCAAGTGAAGCCCTCATTTTTCTCTGATATCATCAACCCAGTTATCACCCCCACAAAACTTCCAGGTAGCTTTGCATTGAAGAGAAAAGAGGGTGACACAAAAGTAGTAAAGAGAAGAGTTTATTGCTCTGCAGCACACTCACCACCACCAGCTTGGCCAGGAACAGCTATTCCTCAGCCTAGTGATTTTAAAACATGGGATGGACCAAAACCCATTTCTGTCTTAGGCTCAACTGGTTCAATTGGAACTCAGACACTTAATATAGTGGCAGAGTTTCCAGAAAGATTTAGAGTTGTGGGGCTTGCAGCTGGTTCAAATGTTACTCTTCTTGCTGAACAGCCTGAGTTAGTAGCTCTTAGAGACGAGTCTAAAATTGATGAACTCAAAGAGGCTTTGGCTGGTATTGATCACAAACCTGAAATCATCCCTGAGGAGCAAGGAGTCATTGAGGTTGCTCGTCACCCTGATGCGGCCACAGTAGTTACAGGAATAGTTGGTTGTGCAGGATTGAAGCCAACAGTTGCGGCGATTGAAGCAGGGAAAGACATAGCATTAGCTAACAAAGAGACAATGATTGCTGGAGGCGCTTTTGTTCTTCCTCTTGCTCACAAAAATAACATCAAAATTCTTCCTGCTGATTCAGAACATTCTGCAATTTTTCAGTGTATCCAAGGTTTGCCAAAGGGTGCACTAAGAAAAATCCAATTAACTGGTTCTGGAGGTGCTTTCAGAGAGTGGCCTGCTGAAAAGATGAAAGACATTAAGCTTAAGGATGCATTAAAGCATCCCATTTGGAGTTTGGGAAGAAAGATAACTATAGATTCTGCTACCCTTTTCAATAAGGGTTTAGAAGTAATTGAAGCACATTACTTGTTTGGAGCAGAATATGATGATATTGAGATTGTTATTCATCCACAATCTATCATACATTCATTAGTTGAAACACAGGATTCTTCTGTTATTGCACAGTTGGGATTACCTGACATGCGGTTGCCACTCCTTTATACTTTGTCATGGCCAGAAAGAGTCTATTACACTAAGAAGTTTCCATCAGTGAATCTTTGCTATGCTGCCGGACGTGCTGGAGGCACCATGACCGGAGTTCTTAGTGCCGCAAACGAGATAGCTGTCGAACTGTTTGTTGCAGAAAAGATTAGCTATCTAGATATTTTCAAGATTGCAGAGCTAACATGTAATGAACATCAAAAAGAATTGGTAACATCTCCTACACTTGAAGAAATTCTTCACTATGATCAATGGGCAAGACAATATGCTGCCGGTTTGCAAAAAGCTTTAAGTGTTTGA

Protein sequence

>Msa1181370

MALNLPSPAQVKPSFFSDIINPVITPTKLPGSFALKRKEGDTKVVKRRVYCSAAHSPPPAWPGTAIPQPSDFKTWDGPKPISVLGSTGSIGTQTLNIVAEFPERFRVVGLAAGSNVTLLAEQPELVALRDESKIDELKEALAGIDHKPEIIPEEQGVIEVARHPDAATVVTGIVGCAGLKPTVAAIEAGKDIALANKETMIAGGAFVLPLAHKNNIKILPADSEHSAIFQCIQGLPKGALRKIQLTGSGGAFREWPAEKMKDIKLKDALKHPIWSLGRKITIDSATLFNKGLEVIEAHYLFGAEYDDIEIVIHPQSIIHSLVETQDSSVIAQLGLPDMRLPLLYTLSWPERVYYTKKFPSVNLCYAAGRAGGTMTGVLSAANEIAVELFVAEKISYLDIFKIAELTCNEHQKELVTSPTLEEILHYDQWARQYAAGLQKALSV*